Query psy5595
Match_columns 293
No_of_seqs 194 out of 1456
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 21:33:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01135 V_A-ATPase_B V/A-type 100.0 1.6E-72 3.4E-77 522.3 21.2 248 2-263 15-275 (276)
2 cd01133 F1-ATPase_beta F1 ATP 100.0 2.3E-70 4.9E-75 508.2 21.8 246 2-266 15-273 (274)
3 cd01132 F1_ATPase_alpha F1 ATP 100.0 1.1E-69 2.5E-74 503.1 22.0 242 2-263 15-272 (274)
4 TIGR01040 V-ATPase_V1_B V-type 100.0 1E-69 2.2E-74 531.8 21.9 260 2-266 87-359 (466)
5 TIGR01041 ATP_syn_B_arch ATP s 100.0 4.9E-69 1.1E-73 529.8 22.3 250 3-266 88-350 (458)
6 PRK04196 V-type ATP synthase s 100.0 7.1E-69 1.5E-73 529.4 21.6 250 2-266 89-352 (460)
7 cd01134 V_A-ATPase_A V/A-type 100.0 2E-68 4.3E-73 507.9 21.1 237 10-264 100-369 (369)
8 TIGR03324 alt_F1F0_F1_al alter 100.0 5.4E-68 1.2E-72 524.5 21.9 241 3-263 109-365 (497)
9 TIGR03305 alt_F1F0_F1_bet alte 100.0 8.1E-68 1.8E-72 519.1 21.6 245 2-265 84-341 (449)
10 CHL00059 atpA ATP synthase CF1 100.0 1.2E-67 2.5E-72 520.4 21.1 250 3-282 88-353 (485)
11 PTZ00185 ATPase alpha subunit; 100.0 1.3E-67 2.8E-72 520.6 20.7 261 3-282 129-409 (574)
12 PRK09281 F0F1 ATP synthase sub 100.0 2.4E-67 5.1E-72 522.8 22.4 244 3-266 109-368 (502)
13 TIGR01039 atpD ATP synthase, F 100.0 2E-67 4.3E-72 516.5 21.3 245 2-265 89-346 (461)
14 PRK12597 F0F1 ATP synthase sub 100.0 2.5E-67 5.4E-72 517.7 20.8 245 2-265 89-346 (461)
15 PRK09280 F0F1 ATP synthase sub 100.0 4.2E-67 9E-72 515.3 21.0 244 3-265 91-347 (463)
16 TIGR00962 atpA proton transloc 100.0 8.7E-67 1.9E-71 518.6 21.7 244 2-265 107-366 (501)
17 PRK07165 F0F1 ATP synthase sub 100.0 7.5E-67 1.6E-71 516.4 20.5 243 3-265 85-343 (507)
18 COG0056 AtpA F0F1-type ATP syn 100.0 1.2E-67 2.5E-72 509.0 13.8 263 3-285 109-377 (504)
19 TIGR01043 ATP_syn_A_arch ATP s 100.0 9.3E-67 2E-71 521.6 20.7 237 11-266 167-436 (578)
20 PRK13343 F0F1 ATP synthase sub 100.0 1.7E-66 3.7E-71 515.2 21.6 243 3-265 109-367 (502)
21 COG1157 FliI Flagellar biosynt 100.0 1.8E-66 4E-71 499.2 20.2 237 5-265 112-362 (441)
22 PRK02118 V-type ATP synthase s 100.0 3.8E-66 8.3E-71 504.9 21.1 234 1-257 86-319 (436)
23 CHL00060 atpB ATP synthase CF1 100.0 3.5E-66 7.5E-71 510.8 21.0 244 2-264 107-370 (494)
24 PRK04192 V-type ATP synthase s 100.0 4.8E-66 1E-70 517.2 21.2 238 11-267 170-440 (586)
25 TIGR01042 V-ATPase_V1_A V-type 100.0 3.8E-66 8.1E-71 515.9 19.9 238 11-266 170-442 (591)
26 PRK08927 fliI flagellum-specif 100.0 1.3E-64 2.9E-69 495.6 20.1 243 2-265 103-359 (442)
27 PRK06936 type III secretion sy 100.0 1.9E-64 4.1E-69 494.2 20.5 241 2-266 108-362 (439)
28 PRK08972 fliI flagellum-specif 100.0 2E-64 4.2E-69 493.5 20.3 243 2-265 108-363 (444)
29 PF00006 ATP-synt_ab: ATP synt 100.0 1.1E-63 2.4E-68 450.0 14.8 200 47-262 1-215 (215)
30 PRK05688 fliI flagellum-specif 100.0 3.8E-62 8.3E-67 479.2 20.1 243 2-265 114-369 (451)
31 TIGR03496 FliI_clade1 flagella 100.0 4.7E-62 1E-66 475.6 19.8 243 2-265 83-338 (411)
32 PRK06820 type III secretion sy 100.0 2.6E-61 5.7E-66 472.7 20.8 240 2-265 110-362 (440)
33 TIGR03498 FliI_clade3 flagella 100.0 3.5E-61 7.7E-66 470.0 20.0 243 3-265 86-341 (418)
34 PRK09099 type III secretion sy 100.0 4.6E-61 9.9E-66 471.4 20.0 240 3-265 110-362 (441)
35 PRK08149 ATP synthase SpaL; Va 100.0 1.6E-60 3.4E-65 465.9 20.8 245 2-266 93-351 (428)
36 PRK07960 fliI flagellum-specif 100.0 8.9E-61 1.9E-65 468.9 18.4 243 3-266 122-377 (455)
37 TIGR03497 FliI_clade2 flagella 100.0 1.8E-60 3.9E-65 464.7 19.6 240 2-265 83-336 (413)
38 cd01136 ATPase_flagellum-secre 100.0 2.3E-60 4.9E-65 451.4 19.4 241 2-265 15-268 (326)
39 PRK07594 type III secretion sy 100.0 2.3E-60 4.9E-65 465.3 19.8 240 2-265 102-354 (433)
40 PRK05922 type III secretion sy 100.0 1.6E-58 3.5E-63 452.1 20.9 239 2-265 103-354 (434)
41 PRK08472 fliI flagellum-specif 100.0 9.2E-59 2E-63 454.1 19.0 242 2-266 103-357 (434)
42 PRK06002 fliI flagellum-specif 100.0 8.1E-58 1.8E-62 448.3 19.2 243 3-266 111-366 (450)
43 TIGR01026 fliI_yscN ATPase Fli 100.0 2.6E-57 5.6E-62 445.6 20.9 243 2-266 108-363 (440)
44 TIGR02546 III_secr_ATP type II 100.0 9.2E-57 2E-61 440.1 19.2 243 2-265 89-344 (422)
45 PRK07196 fliI flagellum-specif 100.0 7.5E-57 1.6E-61 440.7 17.8 242 2-266 101-356 (434)
46 COG0055 AtpD F0F1-type ATP syn 100.0 1E-56 2.2E-61 426.2 15.6 246 1-265 90-350 (468)
47 KOG1351|consensus 100.0 1.7E-54 3.6E-59 401.5 16.3 260 2-266 109-381 (489)
48 PRK12678 transcription termina 100.0 1.6E-53 3.4E-58 424.5 19.4 224 14-265 360-613 (672)
49 PRK09376 rho transcription ter 100.0 3.9E-53 8.4E-58 408.4 19.3 229 14-265 112-366 (416)
50 PRK06793 fliI flagellum-specif 100.0 3.7E-53 8.1E-58 414.4 19.4 240 2-266 102-355 (432)
51 PRK07721 fliI flagellum-specif 100.0 8.6E-53 1.9E-57 413.4 19.2 241 2-266 104-358 (438)
52 COG1156 NtpB Archaeal/vacuolar 100.0 2.5E-53 5.4E-58 405.7 14.2 251 2-266 92-355 (463)
53 PRK14698 V-type ATP synthase s 100.0 1.3E-52 2.9E-57 443.4 19.5 165 101-266 681-870 (1017)
54 PRK12608 transcription termina 100.0 3.2E-52 6.9E-57 400.5 17.3 219 25-265 98-330 (380)
55 PRK06315 type III secretion sy 100.0 6E-51 1.3E-55 399.9 17.6 242 3-266 108-365 (442)
56 KOG1350|consensus 100.0 1.2E-51 2.7E-56 385.5 10.7 246 2-266 137-401 (521)
57 TIGR00767 rho transcription te 100.0 3.1E-47 6.7E-52 368.5 19.3 218 26-265 134-365 (415)
58 COG1155 NtpA Archaeal/vacuolar 100.0 3.9E-48 8.3E-53 379.0 12.2 237 11-266 168-438 (588)
59 KOG1352|consensus 100.0 5.5E-48 1.2E-52 368.0 12.2 238 11-267 189-462 (618)
60 cd01128 rho_factor Transcripti 100.0 8.3E-43 1.8E-47 320.6 17.1 196 48-264 3-212 (249)
61 COG1158 Rho Transcription term 100.0 1.5E-42 3.3E-47 325.7 12.0 218 26-265 137-370 (422)
62 KOG1353|consensus 99.8 1.2E-19 2.5E-24 166.1 3.2 148 33-288 121-280 (340)
63 cd01120 RecA-like_NTPases RecA 99.1 5.2E-09 1.1E-13 86.4 14.9 143 64-240 2-144 (165)
64 KOG1351|consensus 98.8 2.7E-09 5.8E-14 100.6 2.1 63 228-290 272-339 (489)
65 COG1156 NtpB Archaeal/vacuolar 98.7 5.8E-09 1.3E-13 101.5 1.8 206 50-290 97-313 (463)
66 PRK08181 transposase; Validate 98.3 7.3E-07 1.6E-11 83.4 5.3 29 58-86 103-131 (269)
67 cd01394 radB RadB. The archaea 98.3 7.3E-06 1.6E-10 72.9 10.3 115 46-183 2-119 (218)
68 COG1155 NtpA Archaeal/vacuolar 98.2 4.4E-07 9.6E-12 90.8 2.1 46 245-290 346-396 (588)
69 smart00382 AAA ATPases associa 98.2 2.4E-06 5.3E-11 67.2 5.7 99 60-188 1-99 (148)
70 COG1484 DnaC DNA replication p 98.2 2.5E-06 5.4E-11 79.0 6.4 96 60-214 104-200 (254)
71 COG0467 RAD55 RecA-superfamily 98.2 3.3E-05 7.2E-10 70.9 13.7 121 46-183 6-140 (260)
72 PRK09183 transposase/IS protei 98.2 1.9E-06 4.1E-11 79.9 5.3 35 51-85 92-126 (259)
73 PF06745 KaiC: KaiC; InterPro 98.2 1.6E-05 3.4E-10 71.3 10.5 150 46-234 2-162 (226)
74 KOG1352|consensus 98.2 5.5E-07 1.2E-11 87.8 1.1 46 245-290 369-419 (618)
75 PF01695 IstB_IS21: IstB-like 98.2 1.1E-06 2.4E-11 77.1 2.7 29 58-86 44-72 (178)
76 PRK04192 V-type ATP synthase s 98.1 1.1E-06 2.3E-11 89.9 1.9 95 171-290 292-397 (586)
77 TIGR02012 tigrfam_recA protein 98.0 2E-05 4.3E-10 75.6 8.7 111 40-181 33-147 (321)
78 cd01134 V_A-ATPase_A V/A-type 98.0 2.1E-06 4.6E-11 83.1 1.8 61 230-290 256-329 (369)
79 cd01393 recA_like RecA is a b 98.0 5.4E-05 1.2E-09 67.4 10.7 41 46-86 2-44 (226)
80 PRK06526 transposase; Provisio 98.0 5.2E-06 1.1E-10 77.0 4.0 28 59-86 96-123 (254)
81 cd01123 Rad51_DMC1_radA Rad51_ 98.0 6.9E-05 1.5E-09 67.1 11.1 122 46-181 2-129 (235)
82 PRK09354 recA recombinase A; P 98.0 2.3E-05 5E-10 75.9 8.5 112 39-181 37-152 (349)
83 PRK04328 hypothetical protein; 98.0 4.9E-05 1.1E-09 69.9 10.2 59 46-117 6-66 (249)
84 cd00983 recA RecA is a bacter 98.0 2E-05 4.3E-10 75.7 7.8 111 40-181 33-147 (325)
85 PRK09361 radB DNA repair and r 98.0 0.0001 2.3E-09 65.9 12.0 46 40-87 2-49 (225)
86 TIGR01043 ATP_syn_A_arch ATP s 97.9 3.7E-06 8E-11 85.8 2.0 95 171-290 287-394 (578)
87 TIGR03881 KaiC_arch_4 KaiC dom 97.9 8.6E-05 1.9E-09 66.5 10.4 58 46-116 3-62 (229)
88 TIGR03878 thermo_KaiC_2 KaiC d 97.9 0.00011 2.4E-09 67.9 11.1 117 46-179 5-143 (259)
89 TIGR02236 recomb_radA DNA repa 97.9 6.6E-05 1.4E-09 70.8 9.2 123 46-182 78-207 (310)
90 TIGR03877 thermo_KaiC_1 KaiC d 97.9 0.00012 2.6E-09 66.5 10.5 59 46-117 4-64 (237)
91 PRK06067 flagellar accessory p 97.8 0.00014 3.1E-09 65.6 9.7 61 41-116 5-67 (234)
92 PRK12377 putative replication 97.7 5.5E-05 1.2E-09 70.0 6.3 26 61-86 101-126 (248)
93 TIGR02237 recomb_radB DNA repa 97.7 0.0003 6.4E-09 62.0 10.6 103 58-182 9-112 (209)
94 TIGR01042 V-ATPase_V1_A V-type 97.7 1.5E-05 3.2E-10 81.4 2.2 61 230-290 327-400 (591)
95 PLN03187 meiotic recombination 97.7 0.00034 7.3E-09 67.8 11.0 126 40-182 105-236 (344)
96 cd01122 GP4d_helicase GP4d_hel 97.7 0.00082 1.8E-08 61.6 13.0 45 40-86 10-55 (271)
97 PRK09302 circadian clock prote 97.7 0.00029 6.3E-09 71.0 10.8 63 40-117 252-316 (509)
98 TIGR00416 sms DNA repair prote 97.6 0.00019 4.2E-09 71.8 8.0 41 46-86 77-119 (454)
99 PRK09519 recA DNA recombinatio 97.6 0.00026 5.6E-09 75.0 8.9 112 40-181 38-152 (790)
100 PRK04301 radA DNA repair and r 97.6 0.00037 8E-09 66.2 9.1 127 40-182 81-213 (317)
101 PRK06921 hypothetical protein; 97.5 0.00022 4.9E-09 66.4 7.1 27 60-86 116-142 (266)
102 TIGR02238 recomb_DMC1 meiotic 97.5 0.00042 9.1E-09 66.2 8.8 125 41-182 76-206 (313)
103 PTZ00035 Rad51 protein; Provis 97.5 0.00041 8.9E-09 66.9 8.8 126 40-182 97-228 (337)
104 PLN03186 DNA repair protein RA 97.5 0.00074 1.6E-08 65.4 10.1 122 46-182 106-233 (342)
105 PRK08084 DNA replication initi 97.5 0.00023 5.1E-09 64.8 6.0 29 58-86 42-70 (235)
106 PRK08939 primosomal protein Dn 97.5 0.00021 4.5E-09 68.0 5.9 27 60-86 155-181 (306)
107 cd01121 Sms Sms (bacterial rad 97.4 0.00093 2E-08 65.3 10.1 45 41-87 62-108 (372)
108 TIGR03880 KaiC_arch_3 KaiC dom 97.4 0.0017 3.7E-08 58.0 11.2 57 48-117 1-59 (224)
109 TIGR02655 circ_KaiC circadian 97.4 0.0013 2.8E-08 66.3 11.3 62 41-117 243-306 (484)
110 cd01124 KaiC KaiC is a circadi 97.4 0.0019 4.1E-08 55.3 10.8 41 64-117 2-42 (187)
111 PRK09302 circadian clock prote 97.4 0.0009 2E-08 67.5 10.0 64 41-118 11-76 (509)
112 PRK11823 DNA repair protein Ra 97.4 0.00092 2E-08 66.8 9.8 107 41-180 60-169 (446)
113 TIGR02655 circ_KaiC circadian 97.4 0.00081 1.7E-08 67.7 9.4 61 46-118 4-66 (484)
114 PRK06835 DNA replication prote 97.4 0.00032 7E-09 67.5 6.1 36 49-86 173-208 (329)
115 cd00009 AAA The AAA+ (ATPases 97.4 0.0016 3.5E-08 51.6 9.2 27 60-86 18-44 (151)
116 PRK02118 V-type ATP synthase s 97.3 8.6E-05 1.9E-09 73.9 1.9 61 229-290 232-300 (436)
117 PRK08727 hypothetical protein; 97.3 0.00052 1.1E-08 62.4 6.8 25 62-86 42-66 (233)
118 PF08423 Rad51: Rad51; InterP 97.3 0.0016 3.5E-08 60.4 9.9 123 46-183 21-149 (256)
119 PRK14698 V-type ATP synthase s 97.3 0.0001 2.2E-09 80.0 2.2 69 10-81 169-247 (1017)
120 TIGR02239 recomb_RAD51 DNA rep 97.3 0.0013 2.9E-08 62.8 9.6 121 46-181 79-205 (316)
121 PRK07952 DNA replication prote 97.3 0.00053 1.1E-08 63.4 6.3 25 62-86 100-124 (244)
122 COG2256 MGS1 ATPase related to 97.3 0.00091 2E-08 65.8 7.9 88 50-187 37-124 (436)
123 PF05496 RuvB_N: Holliday junc 97.2 0.00097 2.1E-08 61.2 7.1 24 63-86 52-75 (233)
124 PRK06893 DNA replication initi 97.2 0.0012 2.7E-08 59.7 7.3 24 63-86 41-64 (229)
125 PRK08116 hypothetical protein; 97.2 0.00082 1.8E-08 62.7 6.2 23 64-86 117-139 (268)
126 PRK08533 flagellar accessory p 97.1 0.0037 8.1E-08 56.9 10.3 58 47-117 8-67 (230)
127 PF13173 AAA_14: AAA domain 97.1 0.0024 5.3E-08 52.3 7.5 25 61-85 2-26 (128)
128 PRK14086 dnaA chromosomal repl 97.1 0.001 2.3E-08 68.8 6.5 23 64-86 317-339 (617)
129 COG0468 RecA RecA/RadA recombi 97.1 0.0018 4E-08 61.0 7.5 115 38-183 37-157 (279)
130 cd00544 CobU Adenosylcobinamid 97.1 0.0029 6.3E-08 55.2 8.2 88 64-184 2-90 (169)
131 PRK05642 DNA replication initi 97.0 0.0011 2.4E-08 60.4 5.8 24 63-86 47-70 (234)
132 PF13401 AAA_22: AAA domain; P 97.0 0.0027 5.9E-08 51.1 7.2 95 60-180 3-100 (131)
133 PF00308 Bac_DnaA: Bacterial d 97.0 0.0015 3.3E-08 59.0 6.3 25 62-86 35-59 (219)
134 TIGR01041 ATP_syn_B_arch ATP s 97.0 0.0003 6.4E-09 70.6 1.7 62 229-290 239-308 (458)
135 PRK05973 replicative DNA helic 97.0 0.0051 1.1E-07 56.7 9.7 47 57-116 60-106 (237)
136 PRK00149 dnaA chromosomal repl 97.0 0.0019 4.1E-08 64.2 7.0 25 62-86 149-173 (450)
137 PF00154 RecA: recA bacterial 96.9 0.0027 5.8E-08 61.1 7.6 109 40-179 31-143 (322)
138 PF00004 AAA: ATPase family as 96.9 0.0035 7.6E-08 50.1 7.1 23 64-86 1-23 (132)
139 PRK00411 cdc6 cell division co 96.9 0.0057 1.2E-07 59.0 9.8 96 59-180 53-151 (394)
140 PRK04196 V-type ATP synthase s 96.9 0.00035 7.6E-09 70.1 1.4 62 229-290 241-310 (460)
141 PF05729 NACHT: NACHT domain 96.9 0.0049 1.1E-07 51.0 7.9 25 63-87 2-26 (166)
142 TIGR02881 spore_V_K stage V sp 96.8 0.0028 6.1E-08 58.4 6.7 29 57-85 38-66 (261)
143 COG0563 Adk Adenylate kinase a 96.8 0.0044 9.6E-08 54.5 7.5 30 62-91 1-30 (178)
144 PF13481 AAA_25: AAA domain; P 96.8 0.0062 1.3E-07 52.6 8.4 28 59-86 30-57 (193)
145 PRK05800 cobU adenosylcobinami 96.8 0.0041 8.8E-08 54.3 7.1 88 63-183 3-92 (170)
146 PRK14087 dnaA chromosomal repl 96.8 0.0042 9.1E-08 62.1 8.0 24 63-86 143-166 (450)
147 PF00931 NB-ARC: NB-ARC domain 96.7 0.0042 9E-08 56.8 6.7 95 59-180 17-114 (287)
148 TIGR00635 ruvB Holliday juncti 96.7 0.0062 1.4E-07 56.7 7.9 27 60-86 29-55 (305)
149 PRK12422 chromosomal replicati 96.7 0.0034 7.5E-08 62.7 6.5 24 63-86 143-166 (445)
150 KOG1969|consensus 96.7 0.0032 6.9E-08 66.0 6.2 26 61-86 325-351 (877)
151 PRK08927 fliI flagellum-specif 96.7 0.00084 1.8E-08 67.1 1.9 61 230-290 250-318 (442)
152 COG1116 TauB ABC-type nitrate/ 96.7 0.0023 4.9E-08 59.4 4.5 30 55-84 23-52 (248)
153 TIGR00362 DnaA chromosomal rep 96.7 0.0039 8.5E-08 61.0 6.5 26 61-86 136-161 (405)
154 TIGR01040 V-ATPase_V1_B V-type 96.6 0.00085 1.8E-08 67.3 1.8 62 229-290 248-317 (466)
155 cd01125 repA Hexameric Replica 96.6 0.025 5.5E-07 51.2 11.2 50 61-114 1-53 (239)
156 cd03115 SRP The signal recogni 96.6 0.037 8E-07 47.3 11.4 48 64-124 3-51 (173)
157 CHL00181 cbbX CbbX; Provisiona 96.6 0.0052 1.1E-07 57.9 6.6 30 57-86 55-84 (287)
158 PRK14974 cell division protein 96.6 0.02 4.4E-07 55.4 10.7 96 59-179 138-234 (336)
159 PF01637 Arch_ATPase: Archaeal 96.6 0.0028 6E-08 55.3 4.3 27 59-85 18-44 (234)
160 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.0029 6.3E-08 56.0 4.4 37 50-86 27-63 (226)
161 PF00006 ATP-synt_ab: ATP synt 96.5 0.00079 1.7E-08 61.1 0.7 61 230-290 107-177 (215)
162 TIGR03015 pepcterm_ATPase puta 96.5 0.023 5E-07 51.6 10.4 60 27-86 6-68 (269)
163 PRK08118 topology modulation p 96.5 0.0024 5.2E-08 55.3 3.7 27 62-88 2-28 (167)
164 cd01132 F1_ATPase_alpha F1 ATP 96.5 0.0012 2.5E-08 62.2 1.8 61 230-290 163-233 (274)
165 COG1124 DppF ABC-type dipeptid 96.5 0.0021 4.6E-08 59.5 3.2 29 56-84 28-56 (252)
166 PRK08903 DnaA regulatory inact 96.5 0.0059 1.3E-07 54.6 6.1 28 59-86 40-67 (227)
167 TIGR02928 orc1/cdc6 family rep 96.5 0.016 3.5E-07 55.2 9.3 102 59-180 38-142 (365)
168 TIGR02688 conserved hypothetic 96.4 0.0073 1.6E-07 60.3 6.8 28 58-85 206-233 (449)
169 PF13207 AAA_17: AAA domain; P 96.4 0.0028 6E-08 50.6 3.2 24 63-86 1-24 (121)
170 cd03222 ABC_RNaseL_inhibitor T 96.4 0.0032 7E-08 55.3 3.6 36 50-85 14-49 (177)
171 PRK14088 dnaA chromosomal repl 96.4 0.0093 2E-07 59.5 7.2 25 62-86 131-155 (440)
172 PRK13342 recombination factor 96.3 0.019 4E-07 56.6 9.0 28 59-86 34-61 (413)
173 PF13671 AAA_33: AAA domain; P 96.3 0.034 7.4E-07 45.4 9.2 23 64-86 2-24 (143)
174 PF04665 Pox_A32: Poxvirus A32 96.3 0.014 3E-07 54.0 7.6 24 63-86 15-38 (241)
175 PRK10416 signal recognition pa 96.3 0.039 8.4E-07 52.9 10.8 28 59-86 112-139 (318)
176 TIGR01166 cbiO cobalt transpor 96.3 0.0034 7.5E-08 54.6 3.4 30 56-85 13-42 (190)
177 cd03254 ABCC_Glucan_exporter_l 96.3 0.0034 7.4E-08 56.1 3.4 30 56-85 24-53 (229)
178 cd03229 ABC_Class3 This class 96.3 0.0034 7.5E-08 54.3 3.3 30 56-85 21-50 (178)
179 PRK00080 ruvB Holliday junctio 96.3 0.014 3E-07 55.6 7.7 26 61-86 51-76 (328)
180 cd01133 F1-ATPase_beta F1 ATP 96.3 0.0016 3.6E-08 61.2 1.3 59 230-290 165-231 (274)
181 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.3 0.0038 8.1E-08 55.4 3.5 30 56-85 25-54 (218)
182 cd03269 ABC_putative_ATPase Th 96.3 0.0039 8.4E-08 55.0 3.5 31 55-85 20-50 (210)
183 COG1066 Sms Predicted ATP-depe 96.3 0.015 3.3E-07 57.7 7.9 42 46-87 76-119 (456)
184 COG4167 SapF ABC-type antimicr 96.3 0.0021 4.6E-08 57.9 1.8 74 13-99 2-75 (267)
185 PRK07261 topology modulation p 96.3 0.0041 9E-08 53.9 3.6 25 62-86 1-25 (171)
186 cd00820 PEPCK_HprK Phosphoenol 96.3 0.0038 8.3E-08 50.9 3.2 27 56-82 10-36 (107)
187 COG4619 ABC-type uncharacteriz 96.2 0.0037 8E-08 55.6 3.2 41 46-86 13-54 (223)
188 cd03292 ABC_FtsE_transporter F 96.2 0.0041 8.8E-08 54.9 3.5 30 56-85 22-51 (214)
189 TIGR02211 LolD_lipo_ex lipopro 96.2 0.004 8.7E-08 55.3 3.5 30 56-85 26-55 (221)
190 cd03260 ABC_PstB_phosphate_tra 96.2 0.0042 9E-08 55.5 3.6 30 56-85 21-50 (227)
191 TIGR03305 alt_F1F0_F1_bet alte 96.2 0.002 4.3E-08 64.5 1.6 60 229-290 233-300 (449)
192 PRK07960 fliI flagellum-specif 96.2 0.0022 4.9E-08 64.2 1.9 61 230-290 267-335 (455)
193 cd03225 ABC_cobalt_CbiO_domain 96.2 0.0041 8.9E-08 54.8 3.4 30 56-85 22-51 (211)
194 cd03262 ABC_HisP_GlnQ_permease 96.2 0.0041 8.9E-08 54.8 3.3 30 56-85 21-50 (213)
195 cd03224 ABC_TM1139_LivF_branch 96.2 0.0041 8.8E-08 55.2 3.3 29 56-84 21-49 (222)
196 cd03258 ABC_MetN_methionine_tr 96.2 0.0042 9.1E-08 55.7 3.3 30 56-85 26-55 (233)
197 TIGR02315 ABC_phnC phosphonate 96.2 0.0042 9.2E-08 56.0 3.3 30 56-85 23-52 (243)
198 TIGR00960 3a0501s02 Type II (G 96.2 0.0046 9.9E-08 54.8 3.4 30 56-85 24-53 (216)
199 TIGR03496 FliI_clade1 flagella 96.2 0.0018 3.9E-08 64.2 0.9 60 230-289 229-296 (411)
200 KOG2028|consensus 96.2 0.015 3.2E-07 57.3 7.0 24 63-86 164-187 (554)
201 TIGR03410 urea_trans_UrtE urea 96.2 0.0044 9.4E-08 55.5 3.3 31 55-85 20-50 (230)
202 TIGR03608 L_ocin_972_ABC putat 96.2 0.0045 9.7E-08 54.3 3.3 30 56-85 19-48 (206)
203 PRK11124 artP arginine transpo 96.1 0.0047 1E-07 55.8 3.5 29 56-84 23-51 (242)
204 PF00005 ABC_tran: ABC transpo 96.1 0.0042 9.1E-08 50.7 2.9 30 56-85 6-35 (137)
205 TIGR02880 cbbX_cfxQ probable R 96.1 0.015 3.3E-07 54.5 7.0 27 60-86 57-83 (284)
206 PRK13540 cytochrome c biogenes 96.1 0.005 1.1E-07 54.2 3.5 30 56-85 22-51 (200)
207 cd03219 ABC_Mj1267_LivG_branch 96.1 0.0041 8.9E-08 55.8 3.0 29 56-84 21-49 (236)
208 PF07088 GvpD: GvpD gas vesicl 96.1 0.025 5.4E-07 56.0 8.6 154 55-244 4-168 (484)
209 cd03256 ABC_PhnC_transporter A 96.1 0.0047 1E-07 55.5 3.3 30 56-85 22-51 (241)
210 cd03265 ABC_DrrA DrrA is the A 96.1 0.0049 1.1E-07 54.9 3.4 31 54-84 19-49 (220)
211 cd03296 ABC_CysA_sulfate_impor 96.1 0.0049 1.1E-07 55.6 3.5 30 56-85 23-52 (239)
212 cd03261 ABC_Org_Solvent_Resist 96.1 0.0052 1.1E-07 55.2 3.5 31 55-85 20-50 (235)
213 cd03298 ABC_ThiQ_thiamine_tran 96.1 0.0057 1.2E-07 54.0 3.7 33 53-85 16-48 (211)
214 cd03226 ABC_cobalt_CbiO_domain 96.1 0.0053 1.2E-07 54.0 3.4 30 56-85 21-50 (205)
215 cd03257 ABC_NikE_OppD_transpor 96.1 0.005 1.1E-07 54.8 3.2 30 56-85 26-55 (228)
216 cd01135 V_A-ATPase_B V/A-type 96.1 0.0026 5.6E-08 60.0 1.4 62 229-290 167-236 (276)
217 cd03266 ABC_NatA_sodium_export 96.1 0.0053 1.2E-07 54.4 3.4 30 56-85 26-55 (218)
218 TIGR03864 PQQ_ABC_ATP ABC tran 96.1 0.0055 1.2E-07 55.2 3.5 29 56-84 22-50 (236)
219 cd03247 ABCC_cytochrome_bd The 96.1 0.0059 1.3E-07 52.7 3.6 32 54-85 21-52 (178)
220 cd03259 ABC_Carb_Solutes_like 96.1 0.0054 1.2E-07 54.2 3.4 30 56-85 21-50 (213)
221 PRK13539 cytochrome c biogenes 96.0 0.0055 1.2E-07 54.3 3.4 30 56-85 23-52 (207)
222 PRK08972 fliI flagellum-specif 96.0 0.0025 5.5E-08 63.6 1.4 61 230-290 254-322 (444)
223 PRK14255 phosphate ABC transpo 96.0 0.0053 1.1E-07 55.8 3.3 28 56-83 26-53 (252)
224 PRK14247 phosphate ABC transpo 96.0 0.0054 1.2E-07 55.7 3.3 30 56-85 24-53 (250)
225 cd03301 ABC_MalK_N The N-termi 96.0 0.0057 1.2E-07 54.0 3.4 30 56-85 21-50 (213)
226 cd03218 ABC_YhbG The ABC trans 96.0 0.0054 1.2E-07 54.9 3.3 29 56-84 21-49 (232)
227 cd03251 ABCC_MsbA MsbA is an e 96.0 0.006 1.3E-07 54.7 3.5 31 55-85 22-52 (234)
228 TIGR01978 sufC FeS assembly AT 96.0 0.0055 1.2E-07 55.1 3.3 29 56-84 21-49 (243)
229 cd03216 ABC_Carb_Monos_I This 96.0 0.0064 1.4E-07 52.1 3.5 30 56-85 21-50 (163)
230 TIGR02673 FtsE cell division A 96.0 0.0059 1.3E-07 53.9 3.4 29 56-84 23-51 (214)
231 cd03245 ABCC_bacteriocin_expor 96.0 0.0059 1.3E-07 54.2 3.4 30 56-85 25-54 (220)
232 cd03238 ABC_UvrA The excision 96.0 0.0059 1.3E-07 53.6 3.3 31 56-86 16-46 (176)
233 PRK14274 phosphate ABC transpo 96.0 0.0061 1.3E-07 55.8 3.5 29 56-84 33-61 (259)
234 TIGR03600 phage_DnaB phage rep 96.0 0.024 5.3E-07 55.8 8.0 41 46-86 178-219 (421)
235 TIGR00665 DnaB replicative DNA 96.0 0.03 6.5E-07 55.2 8.6 41 46-86 179-220 (434)
236 PRK14267 phosphate ABC transpo 96.0 0.0058 1.3E-07 55.6 3.3 30 56-85 25-54 (253)
237 PRK13541 cytochrome c biogenes 96.0 0.0075 1.6E-07 52.8 3.9 33 53-85 18-50 (195)
238 cd03235 ABC_Metallic_Cations A 96.0 0.0055 1.2E-07 54.2 3.1 30 56-85 20-49 (213)
239 cd03250 ABCC_MRP_domain1 Domai 96.0 0.0061 1.3E-07 53.6 3.3 31 55-85 25-55 (204)
240 cd03293 ABC_NrtD_SsuB_transpor 96.0 0.0059 1.3E-07 54.3 3.3 30 56-85 25-54 (220)
241 PRK10584 putative ABC transpor 96.0 0.0061 1.3E-07 54.5 3.3 30 56-85 31-60 (228)
242 PRK14240 phosphate transporter 96.0 0.006 1.3E-07 55.4 3.3 31 53-83 21-51 (250)
243 PRK10895 lipopolysaccharide AB 96.0 0.0065 1.4E-07 54.8 3.5 30 56-85 24-53 (241)
244 PRK07165 F0F1 ATP synthase sub 96.0 0.0035 7.7E-08 63.5 1.9 61 229-290 234-302 (507)
245 COG3842 PotA ABC-type spermidi 96.0 0.0058 1.3E-07 59.5 3.3 35 49-83 18-53 (352)
246 PRK11701 phnK phosphonate C-P 95.9 0.0063 1.4E-07 55.6 3.4 31 55-85 26-56 (258)
247 cd03252 ABCC_Hemolysin The ABC 95.9 0.0063 1.4E-07 54.7 3.4 31 55-85 22-52 (237)
248 PRK11248 tauB taurine transpor 95.9 0.0065 1.4E-07 55.8 3.5 30 56-85 22-51 (255)
249 TIGR00064 ftsY signal recognit 95.9 0.079 1.7E-06 49.6 10.8 29 58-86 69-97 (272)
250 TIGR02770 nickel_nikD nickel i 95.9 0.0063 1.4E-07 54.7 3.3 31 55-85 6-36 (230)
251 COG2255 RuvB Holliday junction 95.9 0.014 3E-07 55.5 5.7 25 63-87 54-78 (332)
252 PRK13543 cytochrome c biogenes 95.9 0.0064 1.4E-07 54.1 3.3 29 56-84 32-60 (214)
253 PRK09493 glnQ glutamine ABC tr 95.9 0.0067 1.4E-07 54.7 3.5 29 56-84 22-50 (240)
254 PRK14250 phosphate ABC transpo 95.9 0.0067 1.5E-07 55.0 3.5 31 55-85 23-53 (241)
255 PRK11264 putative amino-acid A 95.9 0.0065 1.4E-07 55.1 3.4 29 56-84 24-52 (250)
256 cd03263 ABC_subfamily_A The AB 95.9 0.0068 1.5E-07 53.8 3.4 30 56-85 23-52 (220)
257 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.9 0.0066 1.4E-07 54.6 3.4 31 55-85 23-53 (238)
258 cd03290 ABCC_SUR1_N The SUR do 95.9 0.0066 1.4E-07 54.0 3.3 30 56-85 22-51 (218)
259 cd03230 ABC_DR_subfamily_A Thi 95.9 0.0074 1.6E-07 52.0 3.4 30 56-85 21-50 (173)
260 cd03295 ABC_OpuCA_Osmoprotecti 95.9 0.0073 1.6E-07 54.6 3.6 29 56-84 22-50 (242)
261 cd03223 ABCD_peroxisomal_ALDP 95.9 0.0071 1.5E-07 51.9 3.3 30 56-85 22-51 (166)
262 cd03215 ABC_Carb_Monos_II This 95.9 0.007 1.5E-07 52.5 3.3 30 56-85 21-50 (182)
263 PRK11629 lolD lipoprotein tran 95.9 0.0073 1.6E-07 54.3 3.5 30 56-85 30-59 (233)
264 cd03268 ABC_BcrA_bacitracin_re 95.9 0.0073 1.6E-07 53.2 3.4 30 56-85 21-50 (208)
265 cd03231 ABC_CcmA_heme_exporter 95.9 0.007 1.5E-07 53.4 3.3 31 55-85 20-50 (201)
266 cd03246 ABCC_Protease_Secretio 95.9 0.0081 1.8E-07 51.7 3.6 30 56-85 23-52 (173)
267 PRK10771 thiQ thiamine transpo 95.9 0.0072 1.6E-07 54.3 3.4 33 53-85 17-49 (232)
268 PRK10575 iron-hydroxamate tran 95.9 0.0067 1.5E-07 55.8 3.2 30 56-85 32-61 (265)
269 TIGR03005 ectoine_ehuA ectoine 95.9 0.0075 1.6E-07 54.9 3.5 30 56-85 21-50 (252)
270 PRK10247 putative ABC transpor 95.9 0.0073 1.6E-07 54.2 3.4 30 56-85 28-57 (225)
271 TIGR01039 atpD ATP synthase, F 95.9 0.0039 8.4E-08 62.6 1.7 59 230-290 239-305 (461)
272 PRK14242 phosphate transporter 95.9 0.0073 1.6E-07 54.9 3.4 29 56-84 27-55 (253)
273 PLN00020 ribulose bisphosphate 95.8 0.026 5.6E-07 55.6 7.3 24 64-87 151-174 (413)
274 COG4608 AppF ABC-type oligopep 95.8 0.016 3.4E-07 54.4 5.6 61 14-86 3-64 (268)
275 cd03214 ABC_Iron-Siderophores_ 95.8 0.0077 1.7E-07 52.2 3.3 30 56-85 20-49 (180)
276 PRK05688 fliI flagellum-specif 95.8 0.004 8.7E-08 62.4 1.7 61 230-290 260-328 (451)
277 PRK15177 Vi polysaccharide exp 95.8 0.0079 1.7E-07 53.8 3.4 31 55-85 7-37 (213)
278 PRK14722 flhF flagellar biosyn 95.8 0.022 4.7E-07 56.0 6.7 40 46-85 121-161 (374)
279 PRK15056 manganese/iron transp 95.8 0.0078 1.7E-07 55.7 3.5 33 53-85 25-57 (272)
280 PRK14527 adenylate kinase; Pro 95.8 0.033 7.2E-07 48.6 7.3 38 59-96 4-41 (191)
281 PRK14262 phosphate ABC transpo 95.8 0.0081 1.8E-07 54.5 3.5 29 56-84 24-52 (250)
282 TIGR03411 urea_trans_UrtD urea 95.8 0.008 1.7E-07 54.2 3.4 30 56-85 23-52 (242)
283 PRK11831 putative ABC transpor 95.8 0.008 1.7E-07 55.5 3.5 31 55-85 27-57 (269)
284 cd03236 ABC_RNaseL_inhibitor_d 95.8 0.0078 1.7E-07 55.6 3.4 30 57-86 22-51 (255)
285 TIGR02324 CP_lyasePhnL phospho 95.8 0.008 1.7E-07 53.6 3.3 30 56-85 29-58 (224)
286 TIGR01188 drrA daunorubicin re 95.8 0.008 1.7E-07 56.6 3.5 31 55-85 13-43 (302)
287 TIGR02323 CP_lyasePhnK phospho 95.8 0.0076 1.7E-07 54.8 3.2 30 56-85 24-53 (253)
288 TIGR03740 galliderm_ABC gallid 95.8 0.008 1.7E-07 53.6 3.3 30 56-85 21-50 (223)
289 PRK14241 phosphate transporter 95.8 0.0081 1.8E-07 54.9 3.4 30 56-85 25-54 (258)
290 PRK11247 ssuB aliphatic sulfon 95.8 0.0083 1.8E-07 55.4 3.5 30 56-85 33-62 (257)
291 cd03253 ABCC_ATM1_transporter 95.8 0.0084 1.8E-07 53.8 3.5 31 55-85 21-51 (236)
292 PRK10908 cell division protein 95.8 0.0086 1.9E-07 53.4 3.5 30 56-85 23-52 (222)
293 TIGR00968 3a0106s01 sulfate AB 95.8 0.0081 1.8E-07 54.3 3.3 29 56-84 21-49 (237)
294 PRK14239 phosphate transporter 95.8 0.0084 1.8E-07 54.4 3.4 29 56-84 26-54 (252)
295 PRK14531 adenylate kinase; Pro 95.8 0.0087 1.9E-07 52.1 3.4 26 62-87 3-28 (183)
296 PRK14273 phosphate ABC transpo 95.8 0.0083 1.8E-07 54.6 3.4 30 56-85 28-57 (254)
297 TIGR01184 ntrCD nitrate transp 95.8 0.0084 1.8E-07 54.0 3.4 30 56-85 6-35 (230)
298 PRK14266 phosphate ABC transpo 95.8 0.0089 1.9E-07 54.2 3.6 30 55-84 23-52 (250)
299 PRK14248 phosphate ABC transpo 95.8 0.0084 1.8E-07 55.2 3.4 29 56-84 42-70 (268)
300 PRK11144 modC molybdate transp 95.8 0.011 2.3E-07 57.2 4.2 33 52-84 15-47 (352)
301 PRK13648 cbiO cobalt transport 95.7 0.0089 1.9E-07 55.1 3.5 31 55-85 29-59 (269)
302 PRK09280 F0F1 ATP synthase sub 95.7 0.0041 9E-08 62.5 1.4 59 230-290 240-306 (463)
303 PHA00729 NTP-binding motif con 95.7 0.0042 9.1E-08 57.0 1.3 35 51-86 8-42 (226)
304 cd03248 ABCC_TAP TAP, the Tran 95.7 0.0089 1.9E-07 53.3 3.4 30 56-85 35-64 (226)
305 PRK13548 hmuV hemin importer A 95.7 0.0085 1.9E-07 55.0 3.4 30 56-85 23-52 (258)
306 PRK00279 adk adenylate kinase; 95.7 0.037 8E-07 49.3 7.4 31 62-92 1-31 (215)
307 PRK13649 cbiO cobalt transport 95.7 0.0086 1.9E-07 55.5 3.4 30 56-85 28-57 (280)
308 PRK06217 hypothetical protein; 95.7 0.009 1.9E-07 52.0 3.3 37 62-98 2-38 (183)
309 PRK13538 cytochrome c biogenes 95.7 0.0087 1.9E-07 52.8 3.3 31 55-85 21-51 (204)
310 PRK09544 znuC high-affinity zi 95.7 0.0092 2E-07 54.8 3.5 30 56-85 25-54 (251)
311 cd03213 ABCG_EPDR ABCG transpo 95.7 0.0086 1.9E-07 52.6 3.2 30 56-85 30-59 (194)
312 TIGR00972 3a0107s01c2 phosphat 95.7 0.009 2E-07 54.2 3.4 30 56-85 22-51 (247)
313 cd03228 ABCC_MRP_Like The MRP 95.7 0.0093 2E-07 51.2 3.3 30 56-85 23-52 (171)
314 cd03217 ABC_FeS_Assembly ABC-t 95.7 0.0088 1.9E-07 52.7 3.3 30 55-84 20-49 (200)
315 PRK14237 phosphate transporter 95.7 0.0095 2.1E-07 55.0 3.6 30 56-85 41-70 (267)
316 PRK10253 iron-enterobactin tra 95.7 0.0083 1.8E-07 55.2 3.2 30 56-85 28-57 (265)
317 PRK14245 phosphate ABC transpo 95.7 0.0093 2E-07 54.2 3.5 28 56-83 24-51 (250)
318 PRK14256 phosphate ABC transpo 95.7 0.0089 1.9E-07 54.4 3.3 29 56-84 25-53 (252)
319 TIGR03771 anch_rpt_ABC anchore 95.7 0.0091 2E-07 53.5 3.4 29 57-85 2-30 (223)
320 PRK13645 cbiO cobalt transport 95.7 0.0089 1.9E-07 55.8 3.4 30 56-85 32-61 (289)
321 TIGR01288 nodI ATP-binding ABC 95.7 0.0089 1.9E-07 56.3 3.4 30 56-85 25-54 (303)
322 TIGR01189 ccmA heme ABC export 95.7 0.01 2.2E-07 52.1 3.5 31 55-85 20-50 (198)
323 cd03267 ABC_NatA_like Similar 95.7 0.0092 2E-07 54.0 3.4 30 56-85 42-71 (236)
324 PRK13638 cbiO cobalt transport 95.7 0.0087 1.9E-07 55.3 3.2 30 56-85 22-51 (271)
325 PRK13632 cbiO cobalt transport 95.7 0.0096 2.1E-07 55.0 3.5 30 56-85 30-59 (271)
326 PRK10744 pstB phosphate transp 95.7 0.0093 2E-07 54.7 3.4 29 56-84 34-62 (260)
327 PRK09281 F0F1 ATP synthase sub 95.7 0.0052 1.1E-07 62.4 1.8 61 230-290 256-326 (502)
328 cd03233 ABC_PDR_domain1 The pl 95.7 0.0087 1.9E-07 52.9 3.1 30 56-85 28-57 (202)
329 PRK11300 livG leucine/isoleuci 95.7 0.0092 2E-07 54.2 3.3 30 56-85 26-55 (255)
330 PRK07196 fliI flagellum-specif 95.7 0.0045 9.8E-08 61.8 1.3 60 230-290 247-314 (434)
331 cd01136 ATPase_flagellum-secre 95.7 0.0043 9.4E-08 59.7 1.2 58 230-289 161-226 (326)
332 TIGR02769 nickel_nikE nickel i 95.7 0.0092 2E-07 54.9 3.3 32 54-85 30-61 (265)
333 cd03369 ABCC_NFT1 Domain 2 of 95.7 0.0098 2.1E-07 52.4 3.3 30 56-85 29-58 (207)
334 PRK14244 phosphate ABC transpo 95.7 0.01 2.2E-07 54.0 3.5 29 56-84 26-54 (251)
335 PRK10851 sulfate/thiosulfate t 95.7 0.0097 2.1E-07 57.6 3.5 32 54-85 21-52 (353)
336 PRK14253 phosphate ABC transpo 95.7 0.0097 2.1E-07 53.9 3.4 30 56-85 24-53 (249)
337 PRK11432 fbpC ferric transport 95.6 0.0097 2.1E-07 57.7 3.5 31 54-84 25-55 (351)
338 PRK13641 cbiO cobalt transport 95.6 0.0098 2.1E-07 55.5 3.4 30 56-85 28-57 (287)
339 PRK14268 phosphate ABC transpo 95.6 0.01 2.2E-07 54.3 3.5 29 56-84 33-61 (258)
340 PRK10419 nikE nickel transport 95.6 0.0096 2.1E-07 55.0 3.3 30 55-84 32-61 (268)
341 PRK14243 phosphate transporter 95.6 0.01 2.2E-07 54.7 3.4 29 56-84 31-59 (264)
342 PRK14238 phosphate transporter 95.6 0.011 2.3E-07 54.8 3.6 30 56-85 45-74 (271)
343 PRK14272 phosphate ABC transpo 95.6 0.01 2.2E-07 53.9 3.3 29 56-84 25-53 (252)
344 PRK10418 nikD nickel transport 95.6 0.01 2.2E-07 54.2 3.4 30 56-85 24-53 (254)
345 CHL00131 ycf16 sulfate ABC tra 95.6 0.009 2E-07 54.2 3.0 29 56-84 28-56 (252)
346 PRK15093 antimicrobial peptide 95.6 0.01 2.2E-07 56.7 3.5 35 51-85 22-57 (330)
347 COG0593 DnaA ATPase involved i 95.6 0.033 7.3E-07 55.2 7.2 27 61-87 113-139 (408)
348 TIGR02546 III_secr_ATP type II 95.6 0.0053 1.1E-07 61.1 1.6 56 233-290 240-303 (422)
349 PRK14251 phosphate ABC transpo 95.6 0.011 2.4E-07 53.7 3.5 30 56-85 25-54 (251)
350 TIGR03497 FliI_clade2 flagella 95.6 0.0055 1.2E-07 60.8 1.7 59 230-290 229-295 (413)
351 PRK14261 phosphate ABC transpo 95.6 0.011 2.3E-07 53.9 3.5 28 56-83 27-54 (253)
352 TIGR01277 thiQ thiamine ABC tr 95.6 0.011 2.4E-07 52.5 3.4 33 53-85 16-48 (213)
353 COG1120 FepC ABC-type cobalami 95.6 0.0095 2.1E-07 55.7 3.1 30 54-83 21-50 (258)
354 PRK06002 fliI flagellum-specif 95.6 0.0055 1.2E-07 61.4 1.6 61 230-290 256-324 (450)
355 PRK14269 phosphate ABC transpo 95.6 0.011 2.4E-07 53.6 3.5 29 56-84 23-51 (246)
356 PRK11614 livF leucine/isoleuci 95.6 0.01 2.2E-07 53.4 3.2 29 56-84 26-54 (237)
357 CHL00060 atpB ATP synthase CF1 95.6 0.0063 1.4E-07 61.6 2.0 59 230-290 264-330 (494)
358 cd03294 ABC_Pro_Gly_Bertaine T 95.6 0.011 2.4E-07 54.6 3.5 33 53-85 42-74 (269)
359 PRK11650 ugpC glycerol-3-phosp 95.6 0.01 2.3E-07 57.5 3.4 32 54-85 23-54 (356)
360 cd03264 ABC_drug_resistance_li 95.6 0.01 2.2E-07 52.3 3.1 28 56-84 21-48 (211)
361 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.012 2.7E-07 49.5 3.5 33 53-85 17-49 (157)
362 PRK14530 adenylate kinase; Pro 95.6 0.011 2.4E-07 52.7 3.3 28 60-87 2-29 (215)
363 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.6 0.012 2.5E-07 53.0 3.5 29 56-84 43-71 (224)
364 PRK14275 phosphate ABC transpo 95.6 0.011 2.5E-07 55.2 3.5 32 53-84 57-88 (286)
365 PRK08149 ATP synthase SpaL; Va 95.6 0.0062 1.4E-07 60.7 1.8 59 230-290 243-309 (428)
366 cd03237 ABC_RNaseL_inhibitor_d 95.5 0.011 2.4E-07 54.2 3.4 29 57-85 21-49 (246)
367 cd03234 ABCG_White The White s 95.5 0.011 2.3E-07 53.0 3.1 31 55-85 27-57 (226)
368 PRK13341 recombination factor 95.5 0.039 8.4E-07 58.5 7.8 29 58-86 49-77 (725)
369 PRK14270 phosphate ABC transpo 95.5 0.012 2.5E-07 53.6 3.4 29 56-84 25-53 (251)
370 PRK13643 cbiO cobalt transport 95.5 0.011 2.4E-07 55.3 3.3 32 53-84 24-55 (288)
371 PRK14235 phosphate transporter 95.5 0.012 2.7E-07 54.2 3.6 30 56-85 40-69 (267)
372 PRK13646 cbiO cobalt transport 95.5 0.011 2.5E-07 55.1 3.5 30 56-85 28-57 (286)
373 PRK12724 flagellar biosynthesi 95.5 0.048 1E-06 54.5 7.9 27 59-85 221-247 (432)
374 COG3839 MalK ABC-type sugar tr 95.5 0.011 2.3E-07 57.3 3.3 30 54-83 22-51 (338)
375 PRK14265 phosphate ABC transpo 95.5 0.012 2.6E-07 54.6 3.5 29 55-83 40-68 (274)
376 COG1474 CDC6 Cdc6-related prot 95.5 0.069 1.5E-06 52.2 8.9 94 62-183 43-139 (366)
377 PRK14271 phosphate ABC transpo 95.5 0.012 2.6E-07 54.7 3.5 33 53-85 39-71 (276)
378 TIGR03265 PhnT2 putative 2-ami 95.5 0.012 2.6E-07 57.1 3.5 32 54-85 23-54 (353)
379 PRK09984 phosphonate/organopho 95.5 0.011 2.5E-07 54.1 3.3 30 56-85 25-54 (262)
380 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.012 2.5E-07 49.5 3.1 30 56-85 21-50 (144)
381 PRK13547 hmuV hemin importer A 95.5 0.011 2.5E-07 54.9 3.3 29 56-84 22-50 (272)
382 PRK13546 teichoic acids export 95.5 0.012 2.6E-07 54.6 3.4 33 53-85 42-74 (264)
383 PRK06820 type III secretion sy 95.5 0.0064 1.4E-07 60.8 1.7 60 229-290 254-321 (440)
384 PRK06936 type III secretion sy 95.5 0.0061 1.3E-07 60.9 1.5 59 230-290 254-320 (439)
385 PRK15112 antimicrobial peptide 95.5 0.012 2.7E-07 54.2 3.4 31 55-85 33-63 (267)
386 cd03244 ABCC_MRP_domain2 Domai 95.5 0.013 2.8E-07 52.0 3.5 30 56-85 25-54 (221)
387 cd03232 ABC_PDR_domain2 The pl 95.5 0.012 2.6E-07 51.6 3.2 28 56-83 28-55 (192)
388 KOG0731|consensus 95.5 0.026 5.5E-07 59.9 6.1 92 64-166 347-444 (774)
389 PRK14259 phosphate ABC transpo 95.5 0.012 2.6E-07 54.4 3.4 29 56-84 34-62 (269)
390 PRK08472 fliI flagellum-specif 95.5 0.0066 1.4E-07 60.6 1.7 59 230-289 248-314 (434)
391 PRK11231 fecE iron-dicitrate t 95.5 0.013 2.8E-07 53.5 3.4 29 56-84 23-51 (255)
392 TIGR02982 heterocyst_DevA ABC 95.5 0.013 2.9E-07 52.1 3.5 29 56-84 26-54 (220)
393 COG1134 TagH ABC-type polysacc 95.5 0.012 2.6E-07 54.6 3.2 33 53-85 45-77 (249)
394 PRK11308 dppF dipeptide transp 95.5 0.013 2.7E-07 56.2 3.5 31 55-85 35-65 (327)
395 PRK13651 cobalt transporter AT 95.5 0.012 2.7E-07 55.7 3.4 31 54-84 26-56 (305)
396 PRK14249 phosphate ABC transpo 95.5 0.013 2.8E-07 53.3 3.4 30 56-85 25-54 (251)
397 PRK05748 replicative DNA helic 95.4 0.044 9.5E-07 54.5 7.5 41 46-86 187-228 (448)
398 cd03300 ABC_PotA_N PotA is an 95.4 0.013 2.8E-07 52.7 3.4 30 56-85 21-50 (232)
399 TIGR03498 FliI_clade3 flagella 95.4 0.0079 1.7E-07 59.8 2.1 61 230-290 232-300 (418)
400 KOG0727|consensus 95.4 0.033 7.1E-07 52.6 6.0 73 59-148 187-265 (408)
401 PRK13639 cbiO cobalt transport 95.4 0.013 2.8E-07 54.4 3.4 30 55-84 22-51 (275)
402 PRK14252 phosphate ABC transpo 95.4 0.013 2.9E-07 53.7 3.5 32 53-84 34-65 (265)
403 PRK14254 phosphate ABC transpo 95.4 0.013 2.9E-07 54.7 3.5 30 55-84 59-88 (285)
404 PRK13808 adenylate kinase; Pro 95.4 0.19 4.1E-06 48.7 11.5 32 63-94 2-33 (333)
405 COG1126 GlnQ ABC-type polar am 95.4 0.013 2.7E-07 53.9 3.2 28 56-83 23-50 (240)
406 cd01428 ADK Adenylate kinase ( 95.4 0.011 2.3E-07 51.1 2.6 24 63-86 1-24 (194)
407 PRK12727 flagellar biosynthesi 95.4 0.047 1E-06 56.1 7.6 31 56-86 345-375 (559)
408 PRK10619 histidine/lysine/argi 95.4 0.014 3E-07 53.3 3.5 30 56-85 26-55 (257)
409 PRK09087 hypothetical protein; 95.4 0.021 4.6E-07 51.9 4.6 26 61-86 44-69 (226)
410 cd00984 DnaB_C DnaB helicase C 95.4 0.021 4.6E-07 51.2 4.7 46 58-115 10-55 (242)
411 PRK06620 hypothetical protein; 95.4 0.04 8.7E-07 49.7 6.4 25 62-86 45-69 (214)
412 PRK13637 cbiO cobalt transport 95.4 0.013 2.9E-07 54.7 3.4 30 56-85 28-57 (287)
413 PRK14260 phosphate ABC transpo 95.4 0.014 2.9E-07 53.5 3.4 29 56-84 28-56 (259)
414 PRK02496 adk adenylate kinase; 95.4 0.24 5.3E-06 42.7 11.1 29 62-90 2-30 (184)
415 PF13238 AAA_18: AAA domain; P 95.4 0.014 3E-07 46.4 3.0 22 64-85 1-22 (129)
416 PRK05986 cob(I)alamin adenolsy 95.4 0.2 4.4E-06 44.8 10.7 104 60-181 21-129 (191)
417 PRK15079 oligopeptide ABC tran 95.4 0.014 3E-07 56.1 3.5 33 53-85 39-71 (331)
418 PRK13647 cbiO cobalt transport 95.4 0.014 3.1E-07 54.1 3.5 30 56-85 26-55 (274)
419 cd03291 ABCC_CFTR1 The CFTR su 95.4 0.014 3.1E-07 54.8 3.5 33 53-85 55-87 (282)
420 PF13479 AAA_24: AAA domain 95.4 0.098 2.1E-06 46.8 8.8 22 60-81 2-23 (213)
421 PRK09580 sufC cysteine desulfu 95.4 0.013 2.7E-07 53.0 3.0 29 56-84 22-50 (248)
422 PRK13644 cbiO cobalt transport 95.4 0.014 3.1E-07 54.1 3.4 31 55-85 22-52 (274)
423 TIGR03522 GldA_ABC_ATP gliding 95.3 0.014 3E-07 55.0 3.4 29 56-84 23-51 (301)
424 PRK09452 potA putrescine/sperm 95.3 0.014 3E-07 57.2 3.4 31 54-84 33-63 (375)
425 PRK14236 phosphate transporter 95.3 0.015 3.3E-07 53.8 3.5 29 56-84 46-74 (272)
426 PRK14264 phosphate ABC transpo 95.3 0.015 3.2E-07 55.0 3.5 31 54-84 64-94 (305)
427 COG1136 SalX ABC-type antimicr 95.3 0.015 3.1E-07 53.4 3.3 31 53-83 23-53 (226)
428 PF03796 DnaB_C: DnaB-like hel 95.3 0.023 4.9E-07 52.1 4.7 42 46-87 3-45 (259)
429 PRK13640 cbiO cobalt transport 95.3 0.015 3.2E-07 54.2 3.5 30 56-85 28-57 (282)
430 PRK13650 cbiO cobalt transport 95.3 0.015 3.3E-07 54.1 3.5 33 53-85 25-57 (279)
431 PRK14246 phosphate ABC transpo 95.3 0.015 3.2E-07 53.5 3.3 30 56-85 31-60 (257)
432 PRK09099 type III secretion sy 95.3 0.0086 1.9E-07 59.9 1.9 60 229-290 254-321 (441)
433 PTZ00088 adenylate kinase 1; P 95.3 0.016 3.4E-07 53.1 3.4 29 59-87 4-32 (229)
434 PF08433 KTI12: Chromatin asso 95.3 0.094 2E-06 49.2 8.7 23 64-86 4-26 (270)
435 PF08477 Miro: Miro-like prote 95.3 0.015 3.2E-07 46.0 2.8 24 63-86 1-24 (119)
436 TIGR03873 F420-0_ABC_ATP propo 95.3 0.015 3.2E-07 53.1 3.3 30 56-85 22-51 (256)
437 PRK11000 maltose/maltodextrin 95.3 0.015 3.2E-07 56.6 3.4 30 55-84 23-52 (369)
438 PRK13634 cbiO cobalt transport 95.3 0.016 3.4E-07 54.3 3.4 30 56-85 28-57 (290)
439 PRK14263 phosphate ABC transpo 95.3 0.016 3.6E-07 53.3 3.5 29 56-84 29-57 (261)
440 TIGR02314 ABC_MetN D-methionin 95.3 0.015 3.3E-07 56.2 3.4 31 55-85 25-55 (343)
441 cd03297 ABC_ModC_molybdenum_tr 95.3 0.016 3.5E-07 51.3 3.4 32 53-85 16-47 (214)
442 TIGR02322 phosphon_PhnN phosph 95.3 0.017 3.7E-07 49.5 3.4 25 61-85 1-25 (179)
443 cd03281 ABC_MSH5_euk MutS5 hom 95.2 0.11 2.3E-06 46.8 8.6 34 51-84 19-52 (213)
444 cd03288 ABCC_SUR2 The SUR doma 95.2 0.017 3.8E-07 52.8 3.6 30 56-85 42-71 (257)
445 PRK11022 dppD dipeptide transp 95.2 0.016 3.5E-07 55.4 3.4 30 56-85 28-57 (326)
446 PRK13635 cbiO cobalt transport 95.2 0.017 3.7E-07 53.8 3.5 30 56-85 28-57 (279)
447 COG3854 SpoIIIAA ncharacterize 95.2 0.085 1.8E-06 49.2 7.9 49 60-118 135-184 (308)
448 KOG0733|consensus 95.2 0.04 8.6E-07 57.2 6.3 140 64-217 226-410 (802)
449 cd03299 ABC_ModC_like Archeal 95.2 0.018 3.8E-07 52.0 3.5 30 56-85 20-49 (235)
450 PRK07594 type III secretion sy 95.2 0.0076 1.7E-07 60.2 1.2 59 230-290 247-313 (433)
451 PRK11889 flhF flagellar biosyn 95.2 0.062 1.4E-06 53.5 7.5 28 59-86 239-266 (436)
452 PRK13536 nodulation factor exp 95.2 0.017 3.6E-07 55.7 3.5 36 50-85 55-91 (340)
453 PRK09473 oppD oligopeptide tra 95.2 0.016 3.4E-07 55.7 3.2 30 56-85 37-66 (330)
454 TIGR02142 modC_ABC molybdenum 95.2 0.022 4.8E-07 55.0 4.3 33 53-85 15-47 (354)
455 PRK14258 phosphate ABC transpo 95.2 0.018 3.8E-07 52.9 3.4 30 56-85 28-57 (261)
456 PRK13652 cbiO cobalt transport 95.2 0.018 3.9E-07 53.4 3.5 30 56-85 25-54 (277)
457 COG1223 Predicted ATPase (AAA+ 95.2 0.025 5.4E-07 53.5 4.4 25 62-86 152-176 (368)
458 PRK14532 adenylate kinase; Pro 95.2 0.016 3.5E-07 50.2 3.0 24 63-86 2-25 (188)
459 cd03289 ABCC_CFTR2 The CFTR su 95.2 0.018 3.8E-07 53.9 3.4 31 56-86 25-55 (275)
460 PRK13537 nodulation ABC transp 95.2 0.017 3.7E-07 54.7 3.3 30 56-85 28-57 (306)
461 TIGR02868 CydC thiol reductant 95.1 0.015 3.2E-07 58.6 3.0 32 55-86 355-386 (529)
462 PRK03695 vitamin B12-transport 95.1 0.017 3.6E-07 52.7 3.0 31 54-84 15-45 (248)
463 TIGR03499 FlhF flagellar biosy 95.1 0.077 1.7E-06 49.8 7.5 29 58-86 191-219 (282)
464 PRK11153 metN DL-methionine tr 95.1 0.019 4.1E-07 55.3 3.5 31 55-85 25-55 (343)
465 TIGR03258 PhnT 2-aminoethylpho 95.1 0.019 4.1E-07 55.9 3.5 31 54-84 24-54 (362)
466 PF13521 AAA_28: AAA domain; P 95.0 0.014 3.1E-07 49.4 2.3 22 63-84 1-22 (163)
467 PRK00300 gmk guanylate kinase; 95.0 0.022 4.8E-07 49.9 3.5 27 59-85 3-29 (205)
468 COG3638 ABC-type phosphate/pho 95.0 0.044 9.5E-07 50.9 5.5 38 47-86 18-55 (258)
469 PRK13642 cbiO cobalt transport 95.0 0.021 4.5E-07 53.0 3.5 30 56-85 28-57 (277)
470 TIGR00750 lao LAO/AO transport 95.0 0.15 3.2E-06 48.2 9.3 30 57-86 30-59 (300)
471 TIGR03263 guanyl_kin guanylate 95.0 0.019 4.1E-07 49.2 3.0 25 61-85 1-25 (180)
472 PRK11607 potG putrescine trans 95.0 0.02 4.4E-07 56.0 3.5 31 54-84 38-68 (377)
473 PRK10078 ribose 1,5-bisphospho 95.0 0.02 4.3E-07 49.9 3.1 26 60-85 1-26 (186)
474 PRK13631 cbiO cobalt transport 95.0 0.021 4.5E-07 54.5 3.5 30 56-85 47-76 (320)
475 PRK14257 phosphate ABC transpo 95.0 0.02 4.3E-07 55.0 3.3 32 54-85 101-132 (329)
476 cd03283 ABC_MutS-like MutS-lik 95.0 0.14 3.1E-06 45.5 8.6 26 59-84 23-48 (199)
477 cd03270 ABC_UvrA_I The excisio 95.0 0.022 4.7E-07 51.5 3.4 24 56-79 16-39 (226)
478 PRK03839 putative kinase; Prov 95.0 0.02 4.3E-07 49.4 3.0 34 63-96 2-35 (180)
479 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.019 4.2E-07 49.2 2.9 24 64-87 2-25 (183)
480 PRK13633 cobalt transporter AT 95.0 0.021 4.6E-07 53.1 3.4 30 56-85 31-60 (280)
481 TIGR00235 udk uridine kinase. 95.0 0.021 4.5E-07 50.6 3.2 28 59-86 4-31 (207)
482 PF07728 AAA_5: AAA domain (dy 95.0 0.052 1.1E-06 44.5 5.4 23 64-86 2-24 (139)
483 PRK10636 putative ABC transpor 95.0 0.019 4E-07 59.8 3.2 32 54-85 20-51 (638)
484 PRK08506 replicative DNA helic 95.0 0.12 2.6E-06 52.1 8.9 41 46-86 176-217 (472)
485 PRK08233 hypothetical protein; 94.9 0.024 5.2E-07 48.2 3.4 26 61-86 3-28 (182)
486 PLN03073 ABC transporter F fam 94.9 0.018 3.8E-07 61.0 3.0 31 53-83 195-225 (718)
487 PRK13636 cbiO cobalt transport 94.9 0.023 5E-07 53.0 3.5 30 56-85 27-56 (283)
488 TIGR03269 met_CoM_red_A2 methy 94.9 0.021 4.6E-07 57.6 3.4 31 54-84 19-49 (520)
489 PRK00131 aroK shikimate kinase 94.9 0.028 6.1E-07 47.2 3.7 28 60-87 3-30 (175)
490 PRK14956 DNA polymerase III su 94.9 0.14 2.9E-06 52.0 9.1 27 61-87 40-66 (484)
491 TIGR01186 proV glycine betaine 94.9 0.02 4.3E-07 55.8 3.1 34 53-86 11-44 (363)
492 cd00561 CobA_CobO_BtuR ATP:cor 94.9 0.47 1E-05 41.2 11.3 99 63-179 4-107 (159)
493 PRK04296 thymidine kinase; Pro 94.9 0.19 4.1E-06 44.2 9.0 26 61-86 2-27 (190)
494 TIGR01351 adk adenylate kinase 94.9 0.019 4.2E-07 51.0 2.7 25 63-87 1-25 (210)
495 PRK14528 adenylate kinase; Pro 94.9 0.025 5.3E-07 49.7 3.3 25 62-86 2-26 (186)
496 PRK09825 idnK D-gluconate kina 94.9 0.03 6.5E-07 48.9 3.8 33 60-92 2-34 (176)
497 COG4987 CydC ABC-type transpor 94.8 0.022 4.7E-07 58.1 3.2 30 55-84 358-387 (573)
498 TIGR01313 therm_gnt_kin carboh 94.8 0.023 4.9E-07 48.0 2.8 31 64-94 1-31 (163)
499 PRK11147 ABC transporter ATPas 94.8 0.021 4.5E-07 59.3 3.1 31 55-85 23-53 (635)
500 cd03287 ABC_MSH3_euk MutS3 hom 94.8 0.21 4.6E-06 45.4 9.3 37 49-85 19-55 (222)
No 1
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=1.6e-72 Score=522.31 Aligned_cols=248 Identities=62% Similarity=0.910 Sum_probs=228.0
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..||+.+....+...+ ....+..+.||..|.+++|+| +||||+||+|+|||||||++|||++|+|||+|+.+|
T Consensus 15 vd~lG~piD~~~~~~~~~---~~~i~~~ap~~~~R~~i~e~l--~TGIkaID~l~pig~GQR~gIfgg~GvGKt~L~~~i 89 (276)
T cd01135 15 FNGSGKPIDGGPEILAEE---YLDINGPPINPVARIYPEEMI--QTGISAIDGMNTLVRGQKIPIFSGSGLPHNELAAQI 89 (276)
T ss_pred ECCCCCCCCCCCCCCCCc---eeeccCCCcCchhcCCccccc--ccCcEeeecccccccCCEEEeecCCCCChhHHHHHH
Confidence 356799998776554333 234567888999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
++|+. +||+.++++|||++||||.+|+.+|++++.+.++++||++|++++|+||++|++++|+|+++||||
T Consensus 90 ~~~~~---------~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAEyf 160 (276)
T cd01135 90 ARQAG---------VVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAEYL 160 (276)
T ss_pred HHhhh---------ccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 99984 244456789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|+++|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||++++++||||+||+|++|+||++|||
T Consensus 161 rd~~g~~VLl~~D~ltr~A~A~rEisl~~gepP~~~gyp~~vf~~~~~l~ERag~~~~~~GSITa~~~V~~~~dD~~dpi 240 (276)
T cd01135 161 AYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPI 240 (276)
T ss_pred HhccCCeEEEEEcChhHHHHHHHHHHhccCCCCCccCcCccHHHHhhHHheecccCCCCCeeEEEEEEEEccCCCcCcch
Confidence 99779999999999999999999999999999999999999999999999999998645899999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccch
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATI 263 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~ 263 (293)
+++ +++.+.+|||||+..|-||
T Consensus 241 ~~~~~si~DG~ivLsr~la~~g~~PAID~l~S~SR 275 (276)
T cd01135 241 PDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSR 275 (276)
T ss_pred HHHHHhhcceEEEEcHHHHhCCCCCCcCCcccccC
Confidence 997 7889999999999998775
No 2
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=2.3e-70 Score=508.24 Aligned_cols=246 Identities=20% Similarity=0.292 Sum_probs=227.9
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+..+.+...+ +....+.+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+|+.+|
T Consensus 15 ~d~~G~piD~~~~~~~~~---~~~i~~~~p~~~~R~~~~e~L--~TGIr~ID~l~pig~GQr~~If~~~G~GKTtLa~~i 89 (274)
T cd01133 15 FNVLGEPIDERGPIKTKK---TWPIHREAPEFVEQSTKTEIL--ETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 89 (274)
T ss_pred ECCCCCccCCCCCCCccc---cccccCCCCCchhhcCcCccc--ccCceeeeccCCcccCCEEEEecCCCCChhHHHHHH
Confidence 467799998887764332 334567788999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
+++..+. .+++|||++||||.+|+.+|++++.+.++++||++|++++|+||.+|++++|+|+++||||
T Consensus 90 ~~~i~~~------------~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyf 157 (274)
T cd01133 90 INNIAKA------------HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYF 157 (274)
T ss_pred HHHHHhc------------CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 9998531 2568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|+++|+|||+++||+||||+|+||+++++||+|+++||||++|+.|++|||||++. ++||||+|++|++|+||++|||
T Consensus 158 r~~~g~~Vl~~~Dsltr~a~A~reis~~~ge~p~~~gyp~~~f~~~~~l~ERag~~--~~GSiT~~~~v~~~~dD~~dpi 235 (274)
T cd01133 158 RDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITST--KKGSITSVQAVYVPADDLTDPA 235 (274)
T ss_pred HHhcCCeEEEEEeChhHHHHHHHHHHHHcCCCCCCcCcCccHHHHHHHHHHHhcCC--CCcccceEEEEEecCCCCCCch
Confidence 99889999999999999999999999999999999999999999999999999983 6999999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
+|+ +|+.+++|||||+..|.||+++
T Consensus 236 ~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~ 273 (274)
T cd01133 236 PATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRILD 273 (274)
T ss_pred HHHHHHhcceEEEEcHHHHhCCCCCCcCCccchhcccC
Confidence 996 8899999999999999998764
No 3
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=1.1e-69 Score=503.05 Aligned_cols=242 Identities=22% Similarity=0.307 Sum_probs=223.0
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHH-HHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEI-AAQ 80 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L-~~~ 80 (293)
.+..|++.+....+...+ +......+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+| +.+
T Consensus 15 ld~~G~piD~~~~~~~~~---~~~i~~~~p~~~~R~~i~e~L--~TGI~~ID~l~pigrGQr~~Ifg~~g~GKt~L~l~~ 89 (274)
T cd01132 15 VDALGNPIDGKGPIETKE---RRPIESKAPGIIPRKSVNEPL--QTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDT 89 (274)
T ss_pred EccCCCCccCCCCcCcCc---eeeccCCCCChhhcCCccccc--ccCCEEeeccCCcccCCEEEeeCCCCCCccHHHHHH
Confidence 367899999887666433 223556778899999999999 99999999999999999999999999999999 578
Q ss_pred HHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 81 ICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 81 I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
|++|.. ++.+|||++||||.+|++++++++.+.++++|+++|++++|+||.+|++++|+|+++|||
T Consensus 90 i~~~~~--------------~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~ 155 (274)
T cd01132 90 IINQKG--------------KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEY 155 (274)
T ss_pred HHHhcC--------------CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHH
Confidence 888763 367889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCC--CCcceeeeeEEEecCCCcc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDDFK 238 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~--~~GSiT~i~~v~~~~~d~~ 238 (293)
||++ |+||||++|||||||+|+||+|+++||||+++||||++|+.+++|+||||+++. ++||||+|++|++|+||++
T Consensus 156 fr~~-G~~Vlvl~DslTr~A~A~rEisl~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~~~~GSIT~i~~V~~~~dD~~ 234 (274)
T cd01132 156 FMDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQAGDVS 234 (274)
T ss_pred HHHC-CCCEEEEEcChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHhHHHHHHhhhccCCCCCcceEEEEEEEcCCCCcC
Confidence 9998 999999999999999999999999999999999999999999999999999853 4899999999999999999
Q ss_pred cccccc-------------ccCCCCCCCCcccccccch
Q psy5595 239 VSAARE-------------EVPGRRGFPGYMYTNLATI 263 (293)
Q Consensus 239 dpi~~~-------------~la~~r~~Pai~~~~~~s~ 263 (293)
|||+|+ +|+.+++|||||+..|-||
T Consensus 235 ~pi~~~~~~i~dg~ivLsr~la~~g~yPaId~l~S~SR 272 (274)
T cd01132 235 AYIPTNVISITDGQIFLETDLFNKGIRPAINVGLSVSR 272 (274)
T ss_pred cchHHHHHhhcCeEEEEcHHHHhCCCCCCcCCcccccC
Confidence 999996 8899999999999988765
No 4
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=1e-69 Score=531.77 Aligned_cols=260 Identities=71% Similarity=1.006 Sum_probs=236.0
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+....+...+ +...++.+.||..|.+++++| +||||+||+|+|||+|||++|||++|+|||+|+.||
T Consensus 87 id~~G~piD~~~~~~~~~---~~~i~~~~~~~~~R~~i~e~l--~TGI~aID~l~~ig~GQRigIfagsGvGKs~L~~~i 161 (466)
T TIGR01040 87 FNGSGKPIDKGPPVLAED---YLDINGQPINPYARIYPEEMI--QTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 161 (466)
T ss_pred ECccccccCCCCCCCCCc---eeeccCCCCChhHcCCCCCee--ecCcEEEeccCccccCCeeeeecCCCCCHHHHHHHH
Confidence 356788888776554332 234567888999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
++|+.+.+.+...+++|+.++.+|||++||||+|+.+|++++|.+.|+++||++|++|+|+||++|++++|+|+++||||
T Consensus 162 ~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyf 241 (466)
T TIGR01040 162 CRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEYL 241 (466)
T ss_pred HHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHhhhHHHHHHH
Confidence 99997543333445667667789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|+.+|+||||++|||||||+|+||||+++||||+++||||++|+.|++||||||++++++||||+||+|++|+||++|||
T Consensus 242 r~~~G~~VLl~~DslTr~A~A~REisl~~gepP~~~GYP~svfs~l~~L~ERaG~~~~~~GSITai~tV~~~~dD~~~pI 321 (466)
T TIGR01040 242 AYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPI 321 (466)
T ss_pred HHhcCCcEEEeccChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHHHHHhhccccCCCCCcceEEEEEEECCCCCCCCcc
Confidence 95449999999999999999999999999999999999999999999999999998645899999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
+|+ +|+.+++|||||+..|-||...
T Consensus 322 ~d~~~sIlDGhIvLsr~La~~g~yPAIDvl~SvSRl~~ 359 (466)
T TIGR01040 322 PDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMK 359 (466)
T ss_pred hhhhhhhcceEEEECHHHHhCCCCCccCCccchhhccc
Confidence 997 7899999999999999998775
No 5
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=4.9e-69 Score=529.78 Aligned_cols=250 Identities=53% Similarity=0.822 Sum_probs=227.3
Q ss_pred cccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHH
Q psy5595 3 AVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIC 82 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~ 82 (293)
+..|++.+....+...+ ....++.+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+|+.+|+
T Consensus 88 D~~G~plD~~~~~~~~~---~~~i~~~~~~~~~R~~~~~~l--~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L~~~ia 162 (458)
T TIGR01041 88 NGSGEPIDGGPEIVPDE---RRDINGAPINPYAREYPEEFI--QTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIA 162 (458)
T ss_pred ccCCcccCCCCCCCccc---eeeccCCCCChhhcCCCCCcC--CCCeEEEEccCccccCCEEEeeCCCCCCHHHHHHHHH
Confidence 45688888766554322 234567888999999999999 9999999999999999999999999999999999999
Q ss_pred HHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHH
Q psy5595 83 RQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLA 162 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr 162 (293)
+|+... +..++.+|||++||||.+|+.+|.+++.+.++|+||++|++|+|+||++|++++|+|+++|||||
T Consensus 163 ~~~~ad---------~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr 233 (458)
T TIGR01041 163 RQATVR---------GEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAAEYLA 233 (458)
T ss_pred Hhhccc---------CCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 998421 11235799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccccc
Q psy5595 163 YQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSAA 242 (293)
Q Consensus 163 ~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~ 242 (293)
+.+|+||||++||+||||+|+||||+++||||+++||||++|+.|++||||||++++++||||+||+|++|+||++|||+
T Consensus 234 ~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~GYP~svfs~l~~LlERaG~~~~~~GSITai~tV~~~gdD~~dPI~ 313 (458)
T TIGR01041 234 FEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVKGKKGSITQMPILTMPGDDITHPIP 313 (458)
T ss_pred HccCCcEEEEEcChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccCCCCCcceEEEEEEEcCCCCCCCchH
Confidence 43399999999999999999999999999999999999999999999999999986568999999999999999999999
Q ss_pred cc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 243 RE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 243 ~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
|+ +|+.+++|||||+..|-||+..
T Consensus 314 d~~~sIlDGhivLsr~La~~G~yPAIDvl~SvSR~~~ 350 (458)
T TIGR01041 314 DLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMK 350 (458)
T ss_pred HhhhhhcceEEEEcHHHHhCCCCCccCCccchhhccc
Confidence 97 8899999999999999999865
No 6
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=7.1e-69 Score=529.45 Aligned_cols=250 Identities=52% Similarity=0.820 Sum_probs=228.0
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
++..|++.+....+...+ ....++.+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+|+.+|
T Consensus 89 vD~~G~PlD~~~~i~~~~---~~~i~~~ap~~l~R~~i~epl--~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L~~~i 163 (460)
T PRK04196 89 FDGLGRPIDGGPEIIPEK---RLDINGAPINPVAREYPEEFI--QTGISAIDGLNTLVRGQKLPIFSGSGLPHNELAAQI 163 (460)
T ss_pred ECccCCCccCCCCCCCCc---cCcccCCCCChhhcCCCCccc--cCCeEEEeccCcccCCCEEEeeCCCCCCccHHHHHH
Confidence 356688887776654332 223667888999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
++|+.. ++..++.+|||++||||.+|+.+|.+++.+.++|+||++|++|+|+||.+|++++|+|+++||||
T Consensus 164 a~~~~~---------d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyf 234 (460)
T PRK04196 164 ARQAKV---------LGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAEYL 234 (460)
T ss_pred HHhhhh---------ccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999842 11224579999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccc
Q psy5595 162 A-YQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVS 240 (293)
Q Consensus 162 r-~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dp 240 (293)
| ++ |+||||++||+||||+|+||||+++||||+++||||++|+.|++||||||++++++||||+||+|++|+||++||
T Consensus 235 r~d~-G~~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~~~~~~GSITai~~V~~~gdD~~dp 313 (460)
T PRK04196 235 AFEK-GMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIKGKKGSITQIPILTMPDDDITHP 313 (460)
T ss_pred HHhc-CCcEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhcCCCCCeeeEEEEEEEcCCCCCCCc
Confidence 9 56 999999999999999999999999999999999999999999999999999865689999999999999999999
Q ss_pred cccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 241 AARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 241 i~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
|+|+ +|+.+++|||||+..|-||+..
T Consensus 314 I~d~~~sI~DG~ivLsr~La~~g~~PAIDvl~SvSR~~~ 352 (460)
T PRK04196 314 IPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMK 352 (460)
T ss_pred hhhhhhhhcceEEEEcHHHHhCCCCCccCCccchhhhcc
Confidence 9997 8899999999999999999854
No 7
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=2e-68 Score=507.91 Aligned_cols=237 Identities=27% Similarity=0.439 Sum_probs=218.8
Q ss_pred CCCCceeEEEecceeecccccCC-C-------ccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 10 LTPDDLLYLEFLTKFEKNFVSQE-G-------ERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 10 ~~~~~~~~~e~~~~~~~~~~~~~-p-------~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
-.+|.++++|++++.++.++.+. | ..|..|+++| .||||+||+|+||+||||++|||++|+|||+|+++|
T Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~Pv~~~~P~~~r~~~~~pL--~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~I 177 (369)
T cd01134 100 TVDDVILEVEFDGKKEEITMVQKWPVRQPRPVKEKLPPNEPL--LTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSL 177 (369)
T ss_pred eEEEEEEEEEeCCeEeccccceeeecccCCCccccCCCCCch--hccchhhhccccccCCCEEEEECCCCCChHHHHHHH
Confidence 45788899999888777777774 1 3556667788 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhh-------hCCccccEEEEeeCCCCchhhhhchHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFE-------ENGSMENVCLFLNLANDPTIERIITPRLA 154 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~-------~~g~~~~tvvv~stsd~~~~~r~~a~~~a 154 (293)
++|+. .++|||++||||.+|+.++.+++. +.++|+||++|+||+|+|+.+|++++|+|
T Consensus 178 ak~~~---------------~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R~~s~yta 242 (369)
T cd01134 178 SKYSN---------------SDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIYTG 242 (369)
T ss_pred HhCCC---------------CCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHHHHHHHHHHH
Confidence 99973 568999999999999999988864 57789999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccC-----CCCcceeeeeE
Q psy5595 155 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIPI 229 (293)
Q Consensus 155 ~tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~-----~~~GSiT~i~~ 229 (293)
+++||||||+ |+|||+++||+||||+|+||||++++|+|+++|||+++|+.|++||||||+++ +++||||++++
T Consensus 243 ~tiAEYfrd~-G~dVll~~Ds~tR~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~~~~~~~GSIT~i~~ 321 (369)
T cd01134 243 ITIAEYFRDM-GYNVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIVGA 321 (369)
T ss_pred HHHHHHHHHc-CCCEEEEEcChhHHHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhcccccccCCCCCCccEEEEEE
Confidence 9999999998 99999999999999999999999999999999999999999999999999985 35799999999
Q ss_pred EEecCCCcccccccc-------------ccCCCCCCCCcccccccchh
Q psy5595 230 LTMPNDDFKVSAARE-------------EVPGRRGFPGYMYTNLATIY 264 (293)
Q Consensus 230 v~~~~~d~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~ 264 (293)
|++|+||++|||+++ +|+.+++|||||+..|.|+|
T Consensus 322 V~~~g~D~sdPV~~~t~~i~dg~i~Lsr~La~~g~yPAId~l~S~Sry 369 (369)
T cd01134 322 VSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISYSKY 369 (369)
T ss_pred EEccCCCcCcchHHhhHhhcceEEEECHHHHhCCCCCCcCCcccccCC
Confidence 999999999999986 88999999999999999987
No 8
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=5.4e-68 Score=524.48 Aligned_cols=241 Identities=21% Similarity=0.292 Sum_probs=219.4
Q ss_pred cccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHH-HHHH
Q psy5595 3 AVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEI-AAQI 81 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L-~~~I 81 (293)
+..|++.+....+...+ ....+..+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+| +.+|
T Consensus 109 d~lG~PiDg~~~~~~~~---~~~i~~~~p~~~~R~~v~epl--~TGI~aID~l~pigrGQR~~Ifg~~g~GKT~Lal~~I 183 (497)
T TIGR03324 109 DPLGRPLDGGGPLASSP---RLPIERPAPPIMDRAPVTVPL--QTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTI 183 (497)
T ss_pred CCCCCCcCCCCCCCCCc---eeehhccCcCccccCCCCchh--hcCCEEEeccCCcccCCEEEeecCCCCCHHHHHHHHH
Confidence 45688888776554333 223456677899999999999 99999999999999999999999999999999 5699
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
+||.. .+.+|||++||||.+|+.++.+++.+.++|+||++|++|+|+||.+|+++||+||++||||
T Consensus 184 ~~q~~--------------~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~aiAEyf 249 (497)
T TIGR03324 184 LNQKG--------------RNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHF 249 (497)
T ss_pred HHhcC--------------CCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99974 2457999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCC--CCcceeeeeEEEecCCCccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDDFKV 239 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~--~~GSiT~i~~v~~~~~d~~d 239 (293)
|++ |+|||+++|||||||+|+||+|+++||||+++||||++|+.|++|+||||++++ ++||||+||+|++++||++|
T Consensus 250 rd~-G~~VLlv~DdlTr~A~A~REisL~lgepPgr~gYPg~vF~~~srLlERag~~~~~~~~GSITal~~V~~~~dD~s~ 328 (497)
T TIGR03324 250 MEQ-GRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEAQNISA 328 (497)
T ss_pred HhC-CCCEEEEEcChhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHHHHhhhhccCCCCCcceeEEEEEEcCCCCCCC
Confidence 998 999999999999999999999999999999999999999999999999999864 58999999999999999999
Q ss_pred ccccc-------------ccCCCCCCCCcccccccch
Q psy5595 240 SAARE-------------EVPGRRGFPGYMYTNLATI 263 (293)
Q Consensus 240 pi~~~-------------~la~~r~~Pai~~~~~~s~ 263 (293)
|||++ +|+.+++|||||+..|-||
T Consensus 329 pI~d~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSR 365 (497)
T TIGR03324 329 YIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSR 365 (497)
T ss_pred cchHhheeccceEEEEcHHHHhCCCCCcCCCcccccc
Confidence 99997 7778889999998777655
No 9
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=8.1e-68 Score=519.05 Aligned_cols=245 Identities=21% Similarity=0.302 Sum_probs=226.8
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+....+... .+....+.+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+|+.+|
T Consensus 84 lD~~G~PiD~~~~~~~~---~~~~i~~~ap~~~~R~~i~e~L--~TGIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~ 158 (449)
T TIGR03305 84 FDVFGNTIDRREPPKDV---EWRSVHQAPPTLTRRSSKSEVF--ETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEM 158 (449)
T ss_pred EccCccccCCCCCCCCc---cccchhcCCCCchhcccCCccc--ccCceeeccccccccCCEEEeecCCCCChhHHHHHH
Confidence 45678998877665433 2334667888999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
++++.+. ++++|||++||||.+|+.++++++.+.++++|+++|++|+|+||++|++++|+|+++||||
T Consensus 159 ~~~~~~~------------~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyf 226 (449)
T TIGR03305 159 IHNMVGQ------------HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYF 226 (449)
T ss_pred HHHHHhc------------CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9997421 3579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|+++|+|||+++||+||||+|+||||+++||||+++||||++|+.|++||||||+. ++||||+||+|++|+||++|||
T Consensus 227 rd~~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~~--~~GSIT~i~~V~~~~dD~~dPi 304 (449)
T TIGR03305 227 RDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATT--SDGAITSIQAVYVPADDFTDPA 304 (449)
T ss_pred HHhcCCceEEEecChHHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcCC--CCcCeeEEEEEEccCCCCCCch
Confidence 99449999999999999999999999999999999999999999999999999984 5899999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
+|+ +|+.+++|||||+..|.||+.
T Consensus 305 ~d~~~silDG~IvLsr~La~~g~yPAIDvl~S~SR~~ 341 (449)
T TIGR03305 305 AVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMA 341 (449)
T ss_pred hHhhhhhcceEEEEcHHHHhCCCCCccCCCcchhhcC
Confidence 996 889999999999999999986
No 10
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=1.2e-67 Score=520.37 Aligned_cols=250 Identities=23% Similarity=0.318 Sum_probs=223.1
Q ss_pred cccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHH-HHHH
Q psy5595 3 AVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEI-AAQI 81 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L-~~~I 81 (293)
+..|++.+.+.++...+ ....+..+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+| +.+|
T Consensus 88 d~lG~piDg~~~~~~~~---~~~i~~~ap~~~~R~~v~epl--~TGI~aID~l~pigrGQR~~I~g~~g~GKt~Lal~~I 162 (485)
T CHL00059 88 NALAKPIDGKGEISASE---SRLIESPAPGIISRRSVYEPL--QTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTI 162 (485)
T ss_pred CCCCCeeCCCCCcCCCc---cccccCCCCCchhccCCCccc--ccCceeeccccccccCCEEEeecCCCCCHHHHHHHHH
Confidence 34688888776655432 234566778899999999999 99999999999999999999999999999999 6688
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
++|.. .+.+|||++||||.+|+.++++++.+.++|+||++|++++|+||.+|+++||+||++||||
T Consensus 163 ~~q~~--------------~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~aiAEyf 228 (485)
T CHL00059 163 LNQKG--------------QNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYF 228 (485)
T ss_pred Hhccc--------------CCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhHHHHH
Confidence 88864 3678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCC--CCcceeeeeEEEecCCCccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDDFKV 239 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~--~~GSiT~i~~v~~~~~d~~d 239 (293)
|++ |+|||+++|||||||+|+||+|+++||||+++||||++|+.|++|+||||+++. ++||||+||+|++++||++|
T Consensus 229 r~~-G~~VLlv~DdlTr~A~A~REisl~l~epPgr~gYP~~vF~~~srLlERag~~~~~~~~GSITal~~V~~~~dD~s~ 307 (485)
T CHL00059 229 MYR-GRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSA 307 (485)
T ss_pred HHc-CCCEEEEEcChhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhhcccCCCCCcceEEEEEEEccCCCCCC
Confidence 998 999999999999999999999999999999999999999999999999999853 48999999999999999999
Q ss_pred ccccc-------------ccCCCCCCCCcccccccchhhhccccccCCccccccce
Q psy5595 240 SAARE-------------EVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPI 282 (293)
Q Consensus 240 pi~~~-------------~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~ 282 (293)
|||++ +|+.+++|||||+.. ++||+|+-+|.+.
T Consensus 308 pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~----------SvSRvg~~aq~~~ 353 (485)
T CHL00059 308 YIPTNVISITDGQIFLSADLFNAGIRPAINVGI----------SVSRVGSAAQIKA 353 (485)
T ss_pred cchHhhhhhcceEEEEcHHHHhCCCCCCcCccc----------chhcCCchhhcHH
Confidence 99997 667777888888654 4566666665543
No 11
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=1.3e-67 Score=520.63 Aligned_cols=261 Identities=20% Similarity=0.247 Sum_probs=223.1
Q ss_pred cccCCCCCCCCce---eEEEec-ceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHH
Q psy5595 3 AVVGEEALTPDDL---LYLEFL-TKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIA 78 (293)
Q Consensus 3 ~~~~~~~~~~~~~---~~~e~~-~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~ 78 (293)
+..|++.+....+ -.++.. .....++.+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+|+
T Consensus 129 D~lG~PIDg~~~~~~~g~i~~~~~~~pIe~~ap~~~~R~~v~epL--~TGIkaID~LiPIGRGQR~lIfGd~GtGKTtLA 206 (574)
T PTZ00185 129 NPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNL--LTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIA 206 (574)
T ss_pred CCCCcccCCCCccccCCCCCcccccccccCCCcChhhcCCCCCcC--cCCceeeeccccccCCCEEEeecCCCCChHHHH
Confidence 5678888765321 011111 1224667888899999999999 999999999999999999999999999999995
Q ss_pred -HHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHH
Q psy5595 79 -AQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTT 157 (293)
Q Consensus 79 -~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~ti 157 (293)
.+|+||+... +.. ...++++|||++||||.+|+.+++++|.+.|+|+||++|++++|+||.+|+++||+||++
T Consensus 207 ld~IinQ~~~~----~~~--~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~a~ti 280 (574)
T PTZ00185 207 VSTIINQVRIN----QQI--LSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVTM 280 (574)
T ss_pred HHHHHhhhhhc----ccc--ccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 7999998421 000 012468999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCC--CCcceeeeeEEEecCC
Q psy5595 158 AEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPND 235 (293)
Q Consensus 158 AEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~--~~GSiT~i~~v~~~~~ 235 (293)
||||||+ |+|||+++|||||||+|+||||+++||||+|+||||++|+.|++|+||||++++ ++||||++|+|++++|
T Consensus 281 AEYFrd~-GkdVLiv~DDLTr~A~A~REISLllgrpPgRegYPgdVF~lhsrLlERAg~l~~~~G~GSITAlpiV~t~ad 359 (574)
T PTZ00185 281 GEYFMNR-GRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVETLSN 359 (574)
T ss_pred HHHHHHc-CCCEEEEEcCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccccCCCCCcceEEEEEEEccCC
Confidence 9999998 999999999999999999999999999999999999999999999999999864 3799999999999999
Q ss_pred Ccccccccc-------------ccCCCCCCCCcccccccchhhhccccccCCccccccce
Q psy5595 236 DFKVSAARE-------------EVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPI 282 (293)
Q Consensus 236 d~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~ 282 (293)
|++||||++ +|+.+++|||||+.. ++||+|+-+|.+.
T Consensus 360 Dis~pIptnviSItDGqIvLsr~Lf~~GiyPAIDVl~----------SvSRvg~~aq~~~ 409 (574)
T PTZ00185 360 DVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGL----------SVSRVGSSAQNVA 409 (574)
T ss_pred CCCCcchHhhhhhcCeEEEEcHHHHhCCCCCCcCCcc----------cccccCCccCCHH
Confidence 999999998 556666777777554 5566676666554
No 12
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=2.4e-67 Score=522.77 Aligned_cols=244 Identities=21% Similarity=0.292 Sum_probs=223.2
Q ss_pred cccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHH-HHHH
Q psy5595 3 AVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEI-AAQI 81 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L-~~~I 81 (293)
+..|++.+....+...+ +...+..+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+| +.+|
T Consensus 109 d~~G~pid~~~~~~~~~---~~~i~~~~p~~~~R~~~~~~l--~TGi~~ID~l~pigrGQr~~Ifg~~g~GKt~lal~~i 183 (502)
T PRK09281 109 NPLGQPIDGKGPIEATE---TRPVERKAPGVIDRKSVHEPL--QTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTI 183 (502)
T ss_pred ccCCCCcCCCCCCCCCc---eecccCCCcCccccCCcccee--ecCCeeeecccccccCcEEEeecCCCCCchHHHHHHH
Confidence 45688888766554433 223456778899999999999 99999999999999999999999999999999 6688
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
++|+. ++.+|||++||||.+|+.++.+++.+.++|+||++|++|+|+||.+|+++||+|+++||||
T Consensus 184 ~~~~~--------------~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyf 249 (502)
T PRK09281 184 INQKG--------------KDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYF 249 (502)
T ss_pred HHhcC--------------CCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 88874 3577899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCC--CCcceeeeeEEEecCCCccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDDFKV 239 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~--~~GSiT~i~~v~~~~~d~~d 239 (293)
|++ |+|||+++|||||||+|+||+|+++||||+++||||++|+.|++||||||++++ ++||||+||+|++|+||++|
T Consensus 250 rd~-G~~VLli~DdlTr~A~A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~~~~~~GSITal~~V~~~~dD~s~ 328 (502)
T PRK09281 250 MDN-GKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQAGDVSA 328 (502)
T ss_pred HHc-CCCEEEEecCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhccCCCCCccEEEEEEEECCCCCCCC
Confidence 999 999999999999999999999999999999999999999999999999999863 58999999999999999999
Q ss_pred ccccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 240 SAARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 240 pi~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
||||+ +|+.+++|||||+..|-||...
T Consensus 329 pI~d~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~ 368 (502)
T PRK09281 329 YIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGG 368 (502)
T ss_pred cchHhhhcccceEEEEcHHHHhCCCCCccCCcccccccCC
Confidence 99997 7888889999999999887654
No 13
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=2e-67 Score=516.52 Aligned_cols=245 Identities=21% Similarity=0.309 Sum_probs=225.3
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+....+...+ .....+.+.||..|.+++++| .||||+||+|+|||||||++|||++|+|||+|+.+|
T Consensus 89 iD~~G~pid~~~~~~~~~---~~pi~~~~p~~~~R~~~~e~l--~TGiraID~l~pig~GQr~~If~~~G~GKt~L~~~~ 163 (461)
T TIGR01039 89 FNVLGEPIDEKGPIPAKE---RWPIHRKAPSFEEQSTKVEIL--ETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQEL 163 (461)
T ss_pred EccCCcccCCCCCCCCCc---ccccccCCCChhHcCCccccc--ccCceeecccCCcccCCEEEeecCCCCChHHHHHHH
Confidence 356788888776655433 223456678899999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
+++..+. +..++||++||||.+|+.+|++++.+.++++|+++|++|+|+||.+|++++|+|+++||||
T Consensus 164 ~~~~~~~------------~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyf 231 (461)
T TIGR01039 164 INNIAKE------------HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEYF 231 (461)
T ss_pred HHHHHhc------------CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 9998542 2459999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|+++|+||||++||+||||+|+||||+++||||+++||||++|+.|++||||||+. ++||||+||+|++|+||++|||
T Consensus 232 rd~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~--~~GSITai~tVl~~gdD~~dPi 309 (461)
T TIGR01039 232 RDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITST--KTGSITSVQAVYVPADDLTDPA 309 (461)
T ss_pred HHhcCCeeEEEecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCC--CCCceeEEEEEEccCCCCCCcc
Confidence 99559999999999999999999999999999999999999999999999999984 5899999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
+|+ +|+.+++|||||+..|.||+.
T Consensus 310 ~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~ 346 (461)
T TIGR01039 310 PATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLL 346 (461)
T ss_pred HHHHHHhcceEEEECHHHHhCCCCCCcCCcccccccc
Confidence 996 889999999999999999986
No 14
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=2.5e-67 Score=517.74 Aligned_cols=245 Identities=22% Similarity=0.302 Sum_probs=225.3
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+....+...+ .....+.+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+|+.+|
T Consensus 89 id~~G~plD~~~~~~~~~---~~~i~~~~p~~~~R~~~~e~l--~TGir~ID~l~pigkGQR~gIfa~~G~GKt~Ll~~~ 163 (461)
T PRK12597 89 LDVLGEPLDGGPPLPAEE---RRPIHSTIPPLAEQDTSTEIL--ETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMEL 163 (461)
T ss_pred EeeccccccCCCCCCCcc---eeeccCCCcChhhcCCcCcce--ecCCeeecccCccccCCEEEeecCCCCChhHHHHHH
Confidence 356688887665543222 223456688999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
++++.+. +++++||++||||.+|+.+|++++.+.++++|+++|++|+|+||++|++++|+|+++||||
T Consensus 164 ~~~~~~~------------~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyf 231 (461)
T PRK12597 164 IFNISKQ------------HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEYL 231 (461)
T ss_pred HHHHHhh------------CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999642 3689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|+++|+||||++||+||||+|+||+|+++||||+++||||++|+.+++|+|||++. ++||||+|+||++|+||++|||
T Consensus 232 rd~~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~l~ERag~~--~~GSIT~i~tVl~~~dD~~dPI 309 (461)
T PRK12597 232 RDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIAST--KNGSITSIQAVYVPADDLTDPA 309 (461)
T ss_pred HHhcCCceEEEeccchHHHHHHHHHHHhcCCCCCcCCcCchhHHHHHHHHHhhcCC--CCccccEEEEEEecCCCCCCcc
Confidence 99879999999999999999999999999999999999999999999999999974 5899999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
+|+ +|+.+++|||||+.+|.||..
T Consensus 310 ~d~~~~ilDG~IvLsr~La~~g~yPAIDvl~S~SR~~ 346 (461)
T PRK12597 310 AVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLL 346 (461)
T ss_pred HHHHHhhcceEEEEcHHHHhCCCCCccCCcccccccc
Confidence 996 889999999999999999975
No 15
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=4.2e-67 Score=515.30 Aligned_cols=244 Identities=21% Similarity=0.309 Sum_probs=223.4
Q ss_pred cccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHH
Q psy5595 3 AVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIC 82 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~ 82 (293)
+..|++.+....+...+ +....+.+.||..|.+++++| .||||+||+|+|||||||++|||++|+|||+|+.+|+
T Consensus 91 D~~G~pld~~~~~~~~~---~~pi~~~~~~~~~R~~~~~~l--~TGiraID~l~pigkGQR~gIfa~~GvGKt~Ll~~i~ 165 (463)
T PRK09280 91 NVLGEPIDEKGPIGAEE---RWPIHRKAPSFEELSTKTEIL--ETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELI 165 (463)
T ss_pred eeeccccCCCCCcCccc---eecccCCCCChHHhCCcccee--ccCCeeecccCCcccCCEEEeecCCCCChhHHHHHHH
Confidence 45678777665544322 334556788899999999999 9999999999999999999999999999999999999
Q ss_pred HHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHH
Q psy5595 83 RQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLA 162 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr 162 (293)
++..+. +.++|||++||||.+|+.+|++++.+.++++||++|++|+|+||.+|++++|+|+++|||||
T Consensus 166 ~~~~~~------------~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfr 233 (463)
T PRK09280 166 NNIAKE------------HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFR 233 (463)
T ss_pred HHHHhc------------CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 998642 24589999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccccc
Q psy5595 163 YQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSAA 242 (293)
Q Consensus 163 ~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~ 242 (293)
+++|+||||++||+||||+|+|||++++||||+++||||++|+.|++||||||+. ++||||+|++|++|+||++|||+
T Consensus 234 d~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~--~~GSITai~tVl~~gdD~~dPI~ 311 (463)
T PRK09280 234 DVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST--KKGSITSVQAVYVPADDLTDPAP 311 (463)
T ss_pred HhcCCceEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHhcCC--CCCceeEEEEEECcCCCCCCcch
Confidence 9339999999999999999999999999999999999999999999999999984 58999999999999999999999
Q ss_pred cc-------------ccCCCCCCCCcccccccchhh
Q psy5595 243 RE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 243 ~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
|+ +|+.+++|||||+..|.||+.
T Consensus 312 d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~ 347 (463)
T PRK09280 312 ATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRIL 347 (463)
T ss_pred HhhhhhcceEEEEcHHHHhCCCCCccCCcccccccc
Confidence 96 889999999999999999987
No 16
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=8.7e-67 Score=518.61 Aligned_cols=244 Identities=22% Similarity=0.302 Sum_probs=222.1
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHH-HHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEI-AAQ 80 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L-~~~ 80 (293)
.+..|++.+....+...++. ..+..+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+| +.+
T Consensus 107 ~d~~G~pld~~~~~~~~~~~---~i~~~~p~~~~R~~i~~pl--~TGi~aID~l~pigrGQr~~I~g~~g~GKt~Lal~~ 181 (501)
T TIGR00962 107 VNALGQPIDGKGPIDSDEFR---PIEKIAPGVMERKSVHEPL--QTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDT 181 (501)
T ss_pred eCCCCCeeCCCCCcCCCCce---eeecCCCChhhcCCcCcee--ccCCceeeccCCcccCCEEEeecCCCCCccHHHHHH
Confidence 35678888877666543321 2345566899999999999 99999999999999999999999999999999 578
Q ss_pred HHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 81 ICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 81 I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
|++|+. ++.+|||++||||.+|+.++++++.+.++|+||++|++|+|+||.+|+++||+|+++|||
T Consensus 182 i~~~~~--------------~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~aiAEy 247 (501)
T TIGR00962 182 IINQKD--------------SDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCTMAEY 247 (501)
T ss_pred HHhhcC--------------CCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 999874 356789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCC--CCcceeeeeEEEecCCCcc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDDFK 238 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~--~~GSiT~i~~v~~~~~d~~ 238 (293)
|||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+++. ++||||++|+|++|+||++
T Consensus 248 frd~-G~~VLlv~Ddltr~A~A~REisl~lgepP~~~gYP~~vf~~~srLlERag~~~~~~g~GSITal~~V~~~~dD~s 326 (501)
T TIGR00962 248 FRDN-GKHALIIYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVS 326 (501)
T ss_pred HHHc-CCCEEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHHhhccCCCCCcceEEEEEEECCCCCCC
Confidence 9998 999999999999999999999999999999999999999999999999999853 3799999999999999999
Q ss_pred cccccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 239 VSAARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 239 dpi~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
||||++ +|+.+++|||||+..|-||..
T Consensus 327 ~pI~~~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~ 366 (501)
T TIGR00962 327 AYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVG 366 (501)
T ss_pred CcchHhhhhhcceEEEEcHhHHhCCCCCccCCccchhccC
Confidence 999997 788999999999998887754
No 17
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=7.5e-67 Score=516.40 Aligned_cols=243 Identities=19% Similarity=0.296 Sum_probs=218.3
Q ss_pred cccCCCCCCCCceeEE-E-ecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHH-HH
Q psy5595 3 AVVGEEALTPDDLLYL-E-FLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEI-AA 79 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~-e-~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L-~~ 79 (293)
+..|++.+....+... + +......+..+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+| +.
T Consensus 85 d~lG~piDg~g~i~~~~~~~~~~~~i~~~ap~~~~R~~v~epL--~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~lal~ 162 (507)
T PRK07165 85 DIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQL--YTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIALN 162 (507)
T ss_pred CCCCcccCCCCCCCcccccccccccccCCCCCchhhCCCCcee--ecCchhhhhcCCcccCCEEEeecCCCCCccHHHHH
Confidence 5578888877655431 1 122334556788999999999999 99999999999999999999999999999999 57
Q ss_pred HHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHH
Q psy5595 80 QICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE 159 (293)
Q Consensus 80 ~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAE 159 (293)
+|++|+. ++.+|||++||||.+|+.++.+++.++|+|+||++|++++| ||.+|+++||+||++||
T Consensus 163 ~I~~q~~--------------~dv~~V~~~IGer~~ev~~~~~~l~~~gal~~tvvV~atsd-~~~~r~~ap~~a~tiAE 227 (507)
T PRK07165 163 TIINQKN--------------TNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPST-SPYEQYLAPYVAMAHAE 227 (507)
T ss_pred HHHHhcC--------------CCeEEEEEEccCChHHHHHHHHHhhhcCceeeeEEEEeCCC-CHHHHHHHHHHHHHHHH
Confidence 8999874 36789999999999999999999999999999999999985 99999999999999999
Q ss_pred HHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccc
Q psy5595 160 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKV 239 (293)
Q Consensus 160 yfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~d 239 (293)
|||++ +|||+|+|||||||+|+||+|+++||||+|+||||++|+.|++||||||+++ ++||||++|+|++++||++|
T Consensus 228 yfrd~--~dVLlv~DdLTr~A~A~REisLllgepPgregYPg~vF~~~srLlERAg~~~-g~GSITalpiV~t~~dDis~ 304 (507)
T PRK07165 228 NISYN--DDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFK-NRKTITALPILQTVDNDITS 304 (507)
T ss_pred HHHhc--CceEEEEcChHHHHHHHHHHHhhccCCCCccCCCchHHHHhHHHHHhccCCC-CCCceEEEEEEECCCCCCCC
Confidence 99997 9999999999999999999999999999999999999999999999999986 47999999999999999999
Q ss_pred ccccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 240 SAARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 240 pi~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
||||+ +|+.+++|||||+..|-||..
T Consensus 305 pIpdnv~sItDGqIvLsr~L~~~G~~PAIDvl~SvSRv~ 343 (507)
T PRK07165 305 LISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTG 343 (507)
T ss_pred cchhhhccccCeEEEEcHHHHhCCCCCCcCCccchhhcc
Confidence 99997 667777888888777766643
No 18
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.2e-67 Score=508.96 Aligned_cols=263 Identities=22% Similarity=0.302 Sum_probs=239.7
Q ss_pred cccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHH
Q psy5595 3 AVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIC 82 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~ 82 (293)
+..|++++.+.++-.-++.. .+..+..-..|...+||+ +|||++||+|+|||||||.+|+|+..+|||
T Consensus 109 n~lG~pidgkg~i~~~~~~~---~e~~Apgv~~RksV~ePl--qTGikaIDamiPIGRGQRELIIGDRQTGKT------- 176 (504)
T COG0056 109 DALGNPIDGKGPIDATKTRP---VEKKAPGVMDRKSVNEPL--QTGIKAIDALIPIGRGQRELIIGDRQTGKT------- 176 (504)
T ss_pred cCCCCccCCCCCccccccCc---cccccCceecccccCchh--hhhhHHHhhhcccCCCceEEEeccCcCCcc-------
Confidence 45688888888554444433 334444458899999999 999999999999999999999999555554
Q ss_pred HHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHH
Q psy5595 83 RQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLA 162 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr 162 (293)
+|+.||+|||+..+.+||||+||++.+.+..+.+.|+++|+|+||+||++++++|+..||++||+||++|||||
T Consensus 177 ------aIAidtIiNQk~~~v~CIYVAIGQK~stva~vv~tL~e~gAmdyTiVV~AsASd~a~lqYLaPy~g~a~aE~f~ 250 (504)
T COG0056 177 ------AIAIDTIINQKGSGVKCIYVAIGQKRSTVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPYAGCAMAEYFR 250 (504)
T ss_pred ------hhhHHHHHhcccCCcEEEEEEcccchHHHHHHHHHHHHcCCccceEEEEecCCcchhhhhhhhhhhhHHHHHHH
Confidence 55678899999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCC--CCcceeeeeEEEecCCCcccc
Q psy5595 163 YQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDDFKVS 240 (293)
Q Consensus 163 ~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~--~~GSiT~i~~v~~~~~d~~dp 240 (293)
++ |+|||+|+||||+||.||||+|++++||||||+|||++|+.|+||+|||+++++ ++||||++|++.+.+||++.+
T Consensus 251 ~~-G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g~GSiTALPIIETqagDvSAy 329 (504)
T COG0056 251 DN-GKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQAGDVSAY 329 (504)
T ss_pred hc-CCeEEEEecCchHHHHHHHHHHHHhcCCCCccCCCCceeehhHHHHHHHHhhccccCCCceEeeeeEEeccCceeee
Confidence 99 999999999999999999999999999999999999999999999999999975 589999999999999999999
Q ss_pred ccccccCCCCCCCCcccccccchhhh----ccccccCCccccccceeec
Q psy5595 241 AAREEVPGRRGFPGYMYTNLATIYER----AGRVEGRNGSITQIPILTM 285 (293)
Q Consensus 241 i~~~~la~~r~~Pai~~~~~~s~~~r----~g~~~~~~Gs~~~~~~~~~ 285 (293)
||.|.|+.++++ .++.++++....| +|.++||+||.+|+++++.
T Consensus 330 IpTNVISITDGQ-Ifl~t~LFn~G~rPAInvGlSVSRvGssAQ~kamkk 377 (504)
T COG0056 330 IPTNVISITDGQ-IFLETDLFNAGIRPAINVGLSVSRVGSAAQIKAMKK 377 (504)
T ss_pred cccceEEecCCc-EEeehhhhhcCCCccccCCceeeccchHHHHHHHHH
Confidence 999999999998 9999999988887 8899999999999988753
No 19
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=9.3e-67 Score=521.65 Aligned_cols=237 Identities=27% Similarity=0.412 Sum_probs=217.3
Q ss_pred CCCceeEEEecceeecccc--------cCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHH
Q psy5595 11 TPDDLLYLEFLTKFEKNFV--------SQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIC 82 (293)
Q Consensus 11 ~~~~~~~~e~~~~~~~~~~--------~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~ 82 (293)
.+|.+..+|++++ .+..+ +.+|..|.+++++| .||+|+||+|+||+||||++|||++|+|||+|++||+
T Consensus 167 ~~~~v~~~~~~g~-~~~~~~~~wPvr~p~p~~~R~~~~~pL--~TGiRvID~l~Pi~kGqr~~I~gg~G~GKT~l~~~la 243 (578)
T TIGR01043 167 VEDTIAVVDTDGD-EEIKMYQKWPVRIPRPYKEKLPPEVPL--ITGQRILDTFFPIAKGGTAAIPGPFGSGKTVTQHQLA 243 (578)
T ss_pred eeeeEEEEecCCc-eeeeeeeecccccCCCchhcCCCCcch--hccchhhhccccccCCCEEEEecCCCCCHHHHHHHHH
Confidence 3678888888663 33333 44456688889999 9999999999999999999999999999999999999
Q ss_pred HHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhh-------hCCccccEEEEeeCCCCchhhhhchHHHHH
Q psy5595 83 RQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFE-------ENGSMENVCLFLNLANDPTIERIITPRLAL 155 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~-------~~g~~~~tvvv~stsd~~~~~r~~a~~~a~ 155 (293)
+++ ++++|||++||||.+|+.++.+++. ...+|+||++|+||||+|+++|++++|+|+
T Consensus 244 k~~---------------~adivVyvg~GERG~E~~e~le~f~~l~dp~~g~~~m~RTvlVanTSn~p~~aR~~s~ytg~ 308 (578)
T TIGR01043 244 KWS---------------DADIVVYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGI 308 (578)
T ss_pred hcC---------------CCCEEEEEEeccChHHHHHHHHHhHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHH
Confidence 987 3689999999999999999988884 467899999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccC-----CCCcceeeeeEE
Q psy5595 156 TTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIPIL 230 (293)
Q Consensus 156 tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~-----~~~GSiT~i~~v 230 (293)
|+||||||+ |+|||+++||+||||+|+||||+++||||+++|||+|+|+.|++||||||+++ +++||||+|++|
T Consensus 309 TiAEYfRD~-G~~Vllm~DS~sR~AeAlREIs~~lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~~~~~r~GSIT~i~aV 387 (578)
T TIGR01043 309 TIAEYFRDM-GYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVIGAV 387 (578)
T ss_pred HHHHHHHHC-CCCEEEEecChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhhccccccCCCCCCccEeEEEEE
Confidence 999999998 99999999999999999999999999999999999999999999999999985 247999999999
Q ss_pred EecCCCcccccccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 231 TMPNDDFKVSAARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 231 ~~~~~d~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
++|+||++|||+++ +||.++|||||||..|.|+|..
T Consensus 388 s~~ggD~sdPVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~ 436 (578)
T TIGR01043 388 SPPGGDFSEPVTQNTLRIVKVFWALDADLAQRRHFPAINWLQSYSLYVD 436 (578)
T ss_pred ECCCCCCCccHHHHHHHHhCcEEEeCHHHHhcCCCCCcCcccchhhhcc
Confidence 99999999999996 8999999999999999999975
No 20
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=1.7e-66 Score=515.20 Aligned_cols=243 Identities=19% Similarity=0.255 Sum_probs=220.9
Q ss_pred cccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHH-HHHH
Q psy5595 3 AVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEI-AAQI 81 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L-~~~I 81 (293)
+..|++.+....+...++ ...+..+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+| +.+|
T Consensus 109 d~lG~piDg~~~i~~~~~---~~i~~~ap~~~~R~~v~epl--~TGIkaID~l~pigrGQR~~I~g~~g~GKt~Lal~~i 183 (502)
T PRK13343 109 DPLGRPLDGGGPLQATAR---RPLERPAPAIIERDFVTEPL--QTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAIDAI 183 (502)
T ss_pred CCCCCcccCCCCCCCCce---ecccCCCcChhhcCCCCccc--ccCCceeccccccccCCEEEeeCCCCCCccHHHHHHH
Confidence 456888887766544332 23455778899999999999 99999999999999999999999999999999 6789
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
++|.. .+.+|||++||||.+|+.++.+++.+.++|+||++|++|+|+||.+|+++||+||++||||
T Consensus 184 ~~~~~--------------~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~aiAEyf 249 (502)
T PRK13343 184 INQKD--------------SDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAIAEYF 249 (502)
T ss_pred HhhcC--------------CCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHHHHHHH
Confidence 88864 3567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCC--CCcceeeeeEEEecCCCccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDDFKV 239 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~--~~GSiT~i~~v~~~~~d~~d 239 (293)
|++ |+|||+++|||||||+|+||+|+++||||+++||||++|+.|++|+||||+++. ++||||+||+|++++||++|
T Consensus 250 rd~-G~~VLlv~DdlTr~A~A~REisL~l~epPgr~gYP~~vf~~~srLlERAg~~~~~~~gGSITal~~V~~~~dD~s~ 328 (502)
T PRK13343 250 RDQ-GQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSPELGGGSLTALPIIETLAGELSA 328 (502)
T ss_pred HhC-CCCEEEEecchHHHHHHHHHHHHhcCCCCCcCCcCcchHhhhHHHHHhhccCCCCCCCcceEEEEEEEcCCCCCCC
Confidence 998 999999999999999999999999999999999999999999999999999852 48999999999999999999
Q ss_pred ccccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 240 SAARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 240 pi~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
|||++ +|+.+++|||||+..|-||..
T Consensus 329 pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~ 367 (502)
T PRK13343 329 YIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVG 367 (502)
T ss_pred cchhhhhcccceEEEECHHHHhCCCCCccCCccchhccC
Confidence 99997 778888999999888877643
No 21
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-66 Score=499.18 Aligned_cols=237 Identities=23% Similarity=0.336 Sum_probs=214.2
Q ss_pred cCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 5 VGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 5 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.|++.+....+-. .........|.||..|...+++| .||||+||+|+|||+|||+|||+++|+|||||+.||+++
T Consensus 112 ~G~plDg~~~~~~---~~~~~l~~~pp~pm~R~~I~~~l--~tGVRaIDgllT~G~GQRiGIFAgsGVGKStLLgMiar~ 186 (441)
T COG1157 112 LGRPLDGGGLPDG---TERRPLDAPPPNPLKRRPIEEPL--DTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARN 186 (441)
T ss_pred CCCcCcCCCCCCC---cccccccCCCCCchhcccccccc--cccceeeecccccccCceeEEEecCCCcHHHHHHHHhcc
Confidence 3566665333322 22233456788999999999999 999999999999999999999999999999999999999
Q ss_pred hcccccCCccccCCCCCceEEEEEecCccchhHHHH-HHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHH
Q psy5595 85 AGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFF-KQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAY 163 (293)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~-~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~ 163 (293)
+ +++++|+++||||.+|+.+| .+.|.+.| ++|+|+|++|+|+||.+|+.++++|+++||||||
T Consensus 187 t---------------~aDv~ViaLIGERGREVrEFIE~~Lg~eg-l~rsViVvATSD~s~l~R~~aa~~At~IAEyFRD 250 (441)
T COG1157 187 T---------------EADVNVIALIGERGREVREFIEKDLGEEG-LKRSVVVVATSDESALMRLKAAFTATTIAEYFRD 250 (441)
T ss_pred c---------------cCCEEEEEEeeccchhHHHHHHHhcchhh-ccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8 47899999999998777555 55677777 8999999999999999999999999999999999
Q ss_pred hcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccccc
Q psy5595 164 QCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSAAR 243 (293)
Q Consensus 164 ~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~~ 243 (293)
| ||+||+++||+||||+|+|||+++.||||.++|||+++|+.+++|+||||+. .+||||+|+||++++||++|||+|
T Consensus 251 q-G~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~--~~GsITafYTVLveGDD~~dPiaD 327 (441)
T COG1157 251 Q-GKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNG--DKGSITAFYTVLVEGDDMNDPIAD 327 (441)
T ss_pred C-CCeEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHhHHHHhhcCCC--CCCcEEEEEEEEeecCCCCCchhh
Confidence 9 9999999999999999999999999999999999999999999999999995 589999999999999999999999
Q ss_pred c-------------ccCCCCCCCCcccccccchhh
Q psy5595 244 E-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 244 ~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
+ +||...||||||..+|-||-+
T Consensus 328 ~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm 362 (441)
T COG1157 328 EVRSILDGHIVLSRALAEAGHYPAIDVLASISRVM 362 (441)
T ss_pred hhhhhccceEEeeHhHHhcCCCCCcchHHHHHHHh
Confidence 6 889999999999999999854
No 22
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=3.8e-66 Score=504.93 Aligned_cols=234 Identities=36% Similarity=0.569 Sum_probs=214.3
Q ss_pred CCcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHH
Q psy5595 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQ 80 (293)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~ 80 (293)
++++.|++.+..+.+.. +. ....+.+.||..|.+++++| +||||+||+|+||+||||++|||++|+|||+|+.+
T Consensus 86 V~d~~G~PiD~~~~~~~-~~---~~i~~~~~~p~~R~~~~e~l--~TGIkaID~l~pl~rGQkigIF~gaGvgk~~L~~~ 159 (436)
T PRK02118 86 RFNGSGKPIDGGPELEG-EP---IEIGGPSVNPVKRIVPREMI--RTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLAR 159 (436)
T ss_pred EEccCCcccCCCCCCCc-ce---eecCCCCCChHHcCCccccc--ccCcEEeecccccccCCEEEEEeCCCCCHHHHHHH
Confidence 36788999887665532 22 34577899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 81 ICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 81 I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
|++|+. .+++||++||||.+|+.+|++++.+.++++||++|++++|+||++|++++++|+|+|||
T Consensus 160 ia~~~~---------------~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAEy 224 (436)
T PRK02118 160 IALQAE---------------ADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEK 224 (436)
T ss_pred HHHhhC---------------CCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 999984 46899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVS 240 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dp 240 (293)
||+++|+|||+++|||||||+|+||||+++||||+++||||++|+.|++||||||+++ ++||||+||+|++|+||++||
T Consensus 225 frd~g~~~VLli~DdlTr~a~A~REIsl~~ge~P~r~GYpp~lfs~L~~l~ERag~~~-~~GSITai~~V~~p~DD~tdP 303 (436)
T PRK02118 225 FALEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFE-DGGSITIIAVTTMPGDDVTHP 303 (436)
T ss_pred HHhcCCCCEEEeccCchHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCC-CCeeEEEEEEEEcCCCCcCcc
Confidence 9999449999999999999999999999999999999999999999999999999975 489999999999999999999
Q ss_pred ccccccCCCCCCCCccc
Q psy5595 241 AAREEVPGRRGFPGYMY 257 (293)
Q Consensus 241 i~~~~la~~r~~Pai~~ 257 (293)
|||+-.+..+++ .++.
T Consensus 304 i~d~~~silDGq-IvLs 319 (436)
T PRK02118 304 VPDNTGYITEGQ-FYLR 319 (436)
T ss_pred HHHHHHHhcCcE-EEec
Confidence 999976666655 4443
No 23
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=3.5e-66 Score=510.83 Aligned_cols=244 Identities=20% Similarity=0.282 Sum_probs=220.6
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+....+...+ ....++.+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+|+.+|
T Consensus 107 id~~G~piDg~~~~~~~~---~~pi~~~~p~~~~R~~i~e~L--~TGIraID~l~pigkGQR~gIfgg~GvGKs~L~~~~ 181 (494)
T CHL00060 107 FNVLGEPVDNLGPVDTRT---TSPIHRSAPAFIQLDTKLSIF--ETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMEL 181 (494)
T ss_pred EeecCcccCCCCCCCCCc---cccccCCCcCchhccccccee--ecCceeeeccCCcccCCEEeeecCCCCChhHHHHHH
Confidence 356788888776554333 223456788899999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCcc-------ccEEEEeeCCCCchhhhhchHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSM-------ENVCLFLNLANDPTIERIITPRLA 154 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~-------~~tvvv~stsd~~~~~r~~a~~~a 154 (293)
+++..+. ++++|||++||||.+|+.++++++.+.+++ +|+++|++|+|+||++|++++|+|
T Consensus 182 ~~~~~~~------------~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~~A 249 (494)
T CHL00060 182 INNIAKA------------HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTA 249 (494)
T ss_pred HHHHHHh------------cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHHHHHH
Confidence 9984321 247999999999999999999998886654 488999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecC
Q psy5595 155 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPN 234 (293)
Q Consensus 155 ~tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~ 234 (293)
+++|||||+++++||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||+|++|+
T Consensus 250 ~tiAEyfrd~g~~~VLll~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~LlERaG~~--~~GSITai~tVl~~g 327 (494)
T CHL00060 250 LTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITST--KEGSITSIQAVYVPA 327 (494)
T ss_pred HHHHHHHHHcCCCCEEEEcccchHHHHHHHHHHHhcCCCCCCCCcCCCHHHHhHHHHHhccCC--CCCCeeEEEEEECCC
Confidence 999999999833599999999999999999999999999999999999999999999999996 479999999999999
Q ss_pred CCcccccccc-------------ccCCCCCCCCcccccccchh
Q psy5595 235 DDFKVSAARE-------------EVPGRRGFPGYMYTNLATIY 264 (293)
Q Consensus 235 ~d~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~ 264 (293)
||++|||+|+ +|+.+++|||||+..|-||+
T Consensus 328 dD~tdPI~d~~~silDGhIvLsr~La~~G~yPAIDvl~SvSR~ 370 (494)
T CHL00060 328 DDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTM 370 (494)
T ss_pred CCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCCccchhhh
Confidence 9999999996 88999999999999999997
No 24
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=4.8e-66 Score=517.20 Aligned_cols=238 Identities=29% Similarity=0.417 Sum_probs=219.8
Q ss_pred CCCceeEEEe-cceeecccccCCCcc---------ccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHH
Q psy5595 11 TPDDLLYLEF-LTKFEKNFVSQEGER---------SFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQ 80 (293)
Q Consensus 11 ~~~~~~~~e~-~~~~~~~~~~~~p~~---------r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~ 80 (293)
.+|.+++++. +++..+..|.+ .|+ |.+|+++| .||+|+||+|+||+||||++|+|++|+|||+|+++
T Consensus 170 v~~~i~~~~~~~G~~~~~~~~~-~wPvr~~~p~~~R~~~~~pL--~TGirvID~l~Pi~kGq~~~Ipg~~G~GKTvl~~~ 246 (586)
T PRK04192 170 VDDTIAVLEDEDGEGVELTMMQ-KWPVRRPRPYKEKLPPVEPL--ITGQRVIDTFFPVAKGGTAAIPGPFGSGKTVTQHQ 246 (586)
T ss_pred eeeEEEEEEccCCceeeecccc-ccccccCCcccccCCCCCcc--ccCchhhhcccccccCCeEEEecCCCCCHHHHHHH
Confidence 3688888886 55455666666 355 89999999 99999999999999999999999999999999999
Q ss_pred HHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhh-------CCccccEEEEeeCCCCchhhhhchHHH
Q psy5595 81 ICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEE-------NGSMENVCLFLNLANDPTIERIITPRL 153 (293)
Q Consensus 81 I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~-------~g~~~~tvvv~stsd~~~~~r~~a~~~ 153 (293)
|++++. .+++||++||||.+|+.++.+++.+ .++|+||++|+||||+|+++|++++|+
T Consensus 247 iak~a~---------------adivVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTSn~Pv~aR~~s~yt 311 (586)
T PRK04192 247 LAKWAD---------------ADIVIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTSNMPVAAREASIYT 311 (586)
T ss_pred HHhcCC---------------CCEEEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECCCCCHHHHHHHHHH
Confidence 999983 5899999999999999999988754 568999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccC---CCCcceeeeeEE
Q psy5595 154 ALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE---GRNGSITQIPIL 230 (293)
Q Consensus 154 a~tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~---~~~GSiT~i~~v 230 (293)
|+|+||||||+ |+|||+++||+||||+|+||||+++||+|+++|||+|||+.||+||||||+++ +++||||+|++|
T Consensus 312 giTiAEYfRd~-G~~Vllm~DStSR~AeAlREIS~~l~E~P~~eGYP~yL~S~La~~yERAG~v~~~~~~~GSIT~i~aV 390 (586)
T PRK04192 312 GITIAEYYRDM-GYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEEGSVTIIGAV 390 (586)
T ss_pred HHHHHHHHHHC-CCCEEEEecChHHHHHHHHHHHHhcCCCCccCCcCccHHHHHHHHHHhhcccccCCCCCcceEEEEEE
Confidence 99999999998 99999999999999999999999999999999999999999999999999985 247999999999
Q ss_pred EecCCCcccccccc-------------ccCCCCCCCCcccccccchhhhc
Q psy5595 231 TMPNDDFKVSAARE-------------EVPGRRGFPGYMYTNLATIYERA 267 (293)
Q Consensus 231 ~~~~~d~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~~r~ 267 (293)
++|+||++|||+++ +||.++|||||||..|.|+|...
T Consensus 391 s~pggD~sePVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~ 440 (586)
T PRK04192 391 SPPGGDFSEPVTQNTLRIVKVFWALDAELADRRHFPAINWLTSYSLYLDQ 440 (586)
T ss_pred ECCCCCCCcchHHHHHHHhCceEEEcHHHHhCCcCCccCCccchhhhhhc
Confidence 99999999999996 89999999999999999999763
No 25
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=3.8e-66 Score=515.92 Aligned_cols=238 Identities=27% Similarity=0.392 Sum_probs=217.9
Q ss_pred CCCceeEEEecceeecccccC--------CCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHH
Q psy5595 11 TPDDLLYLEFLTKFEKNFVSQ--------EGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIC 82 (293)
Q Consensus 11 ~~~~~~~~e~~~~~~~~~~~~--------~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~ 82 (293)
.+|.++.+|..++..+..|.+ ++..|..+++|| .||+|+||+|+|||||||++|||++|+|||+|+++|+
T Consensus 170 v~~~i~~~~~~g~~~~~~m~~~wPvr~p~p~~~R~~~~~PL--~TG~RvID~lfPi~kGqr~~I~gg~G~GKT~l~~~la 247 (591)
T TIGR01042 170 VDDTVLEVEFQGVKKKFSMLQTWPVRSPRPVTEKLPANTPL--LTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLS 247 (591)
T ss_pred eeeEEEEEeeCCceeeeccceeeecccCCChhhccCCCCcc--ccchhhhhhccchhcCCeEEEEcCCCcCHHHHHHHHH
Confidence 478899999877755555555 345566667788 9999999999999999999999999999999999999
Q ss_pred HHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhh---------hhCCccccEEEEeeCCCCchhhhhchHHH
Q psy5595 83 RQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDF---------EENGSMENVCLFLNLANDPTIERIITPRL 153 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l---------~~~g~~~~tvvv~stsd~~~~~r~~a~~~ 153 (293)
+++. ++++||++||||.+|++++.+++ .+..+|+||++|++|+|+|+++|++++|+
T Consensus 248 k~s~---------------aDviVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s~yt 312 (591)
T TIGR01042 248 KYSN---------------SDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYT 312 (591)
T ss_pred hccC---------------cCEEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHHHHH
Confidence 9873 57999999999999999888886 33577999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccC-----CCCcceeeee
Q psy5595 154 ALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIP 228 (293)
Q Consensus 154 a~tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~-----~~~GSiT~i~ 228 (293)
|+|+||||||+ |+|||+++||+||||+|+||||+++||||+++|||+|+|+.|++||||||+++ +++||||+|+
T Consensus 313 g~tiAEYfRD~-G~~Vll~~DS~tR~AeAlREIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~~~~~~~~~~GSIT~i~ 391 (591)
T TIGR01042 313 GITLAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVG 391 (591)
T ss_pred HHHHHHHHHhc-CCCEEEEecChHHHHHHHHHHHhccCCCCCCCCcCccHHHHHHHHHHhccCCccCCCCCCCccEEEEE
Confidence 99999999998 99999999999999999999999999999999999999999999999999985 3579999999
Q ss_pred EEEecCCCcccccccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 229 ILTMPNDDFKVSAARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
+|++|+||++|||+++ +||.++||||||+..|.|+|..
T Consensus 392 aVs~~ggD~sePVt~~t~~i~~~f~~Ldr~LA~~ghyPAId~l~S~Sr~~~ 442 (591)
T TIGR01042 392 AVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMR 442 (591)
T ss_pred EEECCCCCCCCchHHHHHHHhcceeeeCHHHHhCCCCCCcCCchhhhhhhh
Confidence 9999999999999986 8899999999999999999975
No 26
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.3e-64 Score=495.56 Aligned_cols=243 Identities=21% Similarity=0.315 Sum_probs=221.0
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+....+..-+ .+...++.+.||..|.+++++| +||||+||+|+||++|||++|||++|+|||+|+++|
T Consensus 103 id~~G~piDg~~~~~~~~--~~~~i~~~~p~~~~R~~~~~~l--~TGir~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I 178 (442)
T PRK08927 103 VNALGEPIDGKGPLPQGP--VPYPLRAPPPPAHSRARVGEPL--DLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSML 178 (442)
T ss_pred EccCCCCccCCCCCCCCc--ccccccCCCcChHHcCCccccc--ccceEEEeeeeEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 356788888776554321 1334678899999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHH-hhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQ-DFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~-~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
+++.. .+++||++||||.+|+.+|.+ .+.+.+ ++|+++|++|+|+||.+|++++|+|+++|||
T Consensus 179 ~~~~~---------------~d~~v~~~iGER~rEv~ef~~~~l~~~~-l~rsvvv~atsd~~~~~r~~a~~~a~tiAEy 242 (442)
T PRK08927 179 ARNAD---------------ADVSVIGLIGERGREVQEFLQDDLGPEG-LARSVVVVATSDEPALMRRQAAYLTLAIAEY 242 (442)
T ss_pred HhccC---------------CCEEEEEEEecCcHHHHHHHHHHhhccC-ceeEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 99873 467889999999999977765 556665 9999999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVS 240 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dp 240 (293)
||++ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++||||||+..+++||||+||+|++|+||++||
T Consensus 243 frd~-G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~~~~GSIT~i~tVlv~gdD~~dp 321 (442)
T PRK08927 243 FRDQ-GKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGPIGEGTITGLFTVLVDGDDHNEP 321 (442)
T ss_pred HHHC-CCcEEEEEeCcHHHHhhhhHHHHhcCCCCcccCCCcchHHHhhHHHHHhcCCCCCCeeeeeeeeeEccCCCCCCc
Confidence 9998 999999999999999999999999999999999999999999999999999754689999999999999999999
Q ss_pred cccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 241 AARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 241 i~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
|+|+ +|+.+++|||||+..|.||..
T Consensus 322 i~d~~~~i~Dg~ivLsr~La~~g~~PAIDvl~S~SR~~ 359 (442)
T PRK08927 322 VADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTM 359 (442)
T ss_pred hhhhhhccccEEEEEcHHHHhCCCCCccCCcccccccc
Confidence 9997 889999999999999999875
No 27
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1.9e-64 Score=494.15 Aligned_cols=241 Identities=25% Similarity=0.331 Sum_probs=219.8
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
++..|++.+....+...+ ....++.+.||+.|.+++++| .||+++||.++|+++|||++|||++|+|||+|+.+|
T Consensus 108 ~d~~G~plD~~~~~~~~~---~~pi~~~~p~p~~R~~i~~~l--~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~I 182 (439)
T PRK06936 108 LDGLGQPFDGGHPPEPAA---WYPVYADAPAPMSRRLIETPL--SLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASL 182 (439)
T ss_pred ECCCCCccCCCCCCCccc---eeeccCCCCChHHccccCCCC--cCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHH
Confidence 456788888776554333 223467788999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHh-hhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQD-FEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~-l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
+++.. .++|||++||||.+|+.+|.+. +.+.+ |+||++|++|+|+||.+|++++|+|+++|||
T Consensus 183 a~~~~---------------~dv~V~~liGERgrEv~ef~~~~l~~~~-l~rtvvv~atsd~p~~~R~~a~~~a~tiAEy 246 (439)
T PRK06936 183 IRSAE---------------VDVTVLALIGERGREVREFIESDLGEEG-LRKAVLVVATSDRPSMERAKAGFVATSIAEY 246 (439)
T ss_pred hcCCC---------------CCEEEEEEEccCcHHHHHHHHHHhcccc-cceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 99873 4689999999999999888755 55555 9999999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVS 240 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dp 240 (293)
||++ |||||+++||+||||+|+|||++++||||+++||||++|+.|++||||||+. ++||||+|+||++|+||++||
T Consensus 247 frd~-G~~Vll~~DslTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l~ERaG~~--~~GSIT~i~tVl~~gdD~~dp 323 (439)
T PRK06936 247 FRDQ-GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQS--DKGSITALYTVLVEGDDMTEP 323 (439)
T ss_pred HHHc-CCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC--CCcceeeeEEEEccCCCCCcc
Confidence 9998 9999999999999999999999999999999999999999999999999984 589999999999999999999
Q ss_pred cccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 241 AARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 241 i~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
|+|+ +|+.+++|||||+.+|.||...
T Consensus 324 I~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~ 362 (439)
T PRK06936 324 VADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMN 362 (439)
T ss_pred hHHHhhhhcceEEEECHHHHhCCCCCccCCcccccccch
Confidence 9997 8899999999999999999753
No 28
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2e-64 Score=493.46 Aligned_cols=243 Identities=20% Similarity=0.282 Sum_probs=220.8
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
++..|++.+....+..-+ .....+.+.||..|.+++++| +||+++||.++||++|||++|||++|+|||+|+.+|
T Consensus 108 id~~G~plD~~~~~~~~~---~~~i~~~~~~p~~R~~i~e~l--~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I 182 (444)
T PRK08972 108 IDGVGNPLDGLGPIYTDQ---RASRHSPPINPLSRRPITEPL--DVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMM 182 (444)
T ss_pred ECCCCCCcCCCCCCCCCc---cccccCCCCChhhcCCCCCcc--cccceeecceEEEcCCCEEEEECCCCCChhHHHHHh
Confidence 356788887765543222 223556778899999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
+++.. .+++|+++||||.+|+.+|.+++...+.++||++|++|+|+||.+|++++|+|+++||||
T Consensus 183 ~~~~~---------------~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyf 247 (444)
T PRK08972 183 TRGTT---------------ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEYF 247 (444)
T ss_pred ccCCC---------------CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 87652 468888999999999998888876677799999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|++ |+|||+++|||||||+|+||||+++||||+++||||++|+.|++||||||+..+++||||+|++|++|+||++|||
T Consensus 248 rd~-G~~VLl~~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~L~ERAg~~~~~~GSITai~tVl~~gdD~~dpI 326 (444)
T PRK08972 248 RDQ-GLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYTVLTEGDDLQDPI 326 (444)
T ss_pred HHc-CCCEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHHhcCCCCCCceeeeEEEEEEeCCCCCcch
Confidence 998 9999999999999999999999999999999999999999999999999997546899999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
+|+ +|+.+++|||||+..|.||..
T Consensus 327 ~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~ 363 (444)
T PRK08972 327 ADASRAILDGHIVLSRELADSGHYPAIDIEASISRVM 363 (444)
T ss_pred HHhhhhhcceEEEEcHHHHhCCCCCeeCCccccccCc
Confidence 997 889999999999999999875
No 29
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=1.1e-63 Score=449.98 Aligned_cols=200 Identities=33% Similarity=0.569 Sum_probs=188.3
Q ss_pred CCceeeeecccccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhh
Q psy5595 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEE 126 (293)
Q Consensus 47 TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~ 126 (293)
||||+||+|+|||||||++|||++|+|||+|+++|+++.. .+++||++||||.+|+.++++++.+
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~---------------~d~~V~~~iGer~~Ev~~~~~~~~~ 65 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD---------------ADVVVYALIGERGREVTEFIEELKG 65 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT---------------TTEEEEEEESECHHHHHHHHHHHHH
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhccc---------------ccceeeeeccccchhHHHHHHHHhh
Confidence 8999999999999999999999999999999999999984 4566999999999999999999999
Q ss_pred CCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhh
Q psy5595 127 NGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTN 206 (293)
Q Consensus 127 ~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~ 206 (293)
.++++|+++|++++|+|+.+|++++++||++|||||++ |||||+++||+||||+|+||+++++||+|+++|||+++|+.
T Consensus 66 ~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfrd~-G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~ 144 (215)
T PF00006_consen 66 EGALERTVVVAATSDEPPAARYRAPYTALTIAEYFRDQ-GKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSLFSD 144 (215)
T ss_dssp TTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHHHHHHT-TSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHH
T ss_pred cccccccccccccchhhHHHHhhhhccchhhhHHHhhc-CCceeehhhhhHHHHHHHHhhhcccccccccccccchhccc
Confidence 99999999999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccc--CCCCcceeeeeEEEecCCCcccccccc-------------ccCCCCCCCCcccccccc
Q psy5595 207 LATIYERAGRV--EGRNGSITQIPILTMPNDDFKVSAARE-------------EVPGRRGFPGYMYTNLAT 262 (293)
Q Consensus 207 la~l~ERag~~--~~~~GSiT~i~~v~~~~~d~~dpi~~~-------------~la~~r~~Pai~~~~~~s 262 (293)
+++||||||++ +.++||||++++|++|+||++|||+++ +|+.+++|||||+..|.|
T Consensus 145 l~~l~ERag~~~~~~~~GSIT~~~~v~~~~~d~~~pi~~~~~~~~dg~i~L~r~la~~~~~PAId~~~S~S 215 (215)
T PF00006_consen 145 LASLYERAGKVNSEEGGGSITAIPTVLVPGDDITDPIPDNTKSILDGHIVLSRKLAERGIFPAIDVLKSVS 215 (215)
T ss_dssp HHHHHTTSEEBSTTTTSEEEEEEEEEEESTTBTTSHHHHHHHTTSSEEEEB-HHHHHTT-SS-BETTTEEE
T ss_pred hhhHHHHhhccccccCCceeeeecccccccccccchHHHHHHhhcceEEEeCHHHHhCCCCCccCCccCCC
Confidence 99999999998 236999999999999999999999986 889999999999998864
No 30
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.8e-62 Score=479.24 Aligned_cols=243 Identities=19% Similarity=0.276 Sum_probs=222.8
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+....+..- .....++.+.||..|.++++++ +||+|+||.|+||++|||++|||++|+|||+|+.+|
T Consensus 114 ~d~~G~plD~~~~~~~~---~~~~i~~~~~~p~~R~~i~~~l--~TGi~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I 188 (451)
T PRK05688 114 LDGAGRALDGKGPMKAE---DWVPMDGPTINPLNRHPISEPL--DVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMM 188 (451)
T ss_pred EeccCceecCCCCCCcc---ceecccCCCCCHHHcccccCCc--ccceeeecceEEecCCcEEEEECCCCCCHHHHHHHH
Confidence 35678888776554322 2334567789999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
+++. +.+++|+++||+|.+++.++.+.+...+.++|+++|++|+|+||.+|++++++|+++||||
T Consensus 189 ~g~~---------------~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~aiAEyf 253 (451)
T PRK05688 189 TRFT---------------EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYF 253 (451)
T ss_pred hCCC---------------CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 8765 2467899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|++ |+||||++|||||||+|+||||+++||||+++||||++|+.|++||||||+.++++||||+||||++|+||++|||
T Consensus 254 rd~-G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~l~ERag~~~~~~GSITai~tVl~~gdD~~dpI 332 (451)
T PRK05688 254 RDK-GKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSITAFYTVLSEGDDQQDPI 332 (451)
T ss_pred HHC-CCCEEEEecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHHHHHHhcCCCCCCceeeEEEEEEecCCCCCCch
Confidence 998 9999999999999999999999999999999999999999999999999997545899999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
+|+ +|+.+++|||||+..|.||..
T Consensus 333 ~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~ 369 (451)
T PRK05688 333 ADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVM 369 (451)
T ss_pred HHHHHhhccEEEEEcHHHHhCCCCCccCCccccCccc
Confidence 997 889999999999999998875
No 31
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=4.7e-62 Score=475.63 Aligned_cols=243 Identities=21% Similarity=0.292 Sum_probs=223.2
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+....+...+ +...++.+.||..|.++++++ .||+++||.++|+++||+++|||++|+|||+|+.+|
T Consensus 83 id~~G~pld~~~~~~~~~---~~~i~~~~~~~~~R~~~~~~~--~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I 157 (411)
T TIGR03496 83 IDGLGRPLDGKGPLDAGE---RVPLYAPPINPLKRAPIDEPL--DVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMM 157 (411)
T ss_pred ECCCCCCcCCCCCCCccc---ccccccCCCCHHhccCcceEe--eeeEEeecceEEEecCcEEEEECCCCCCHHHHHHHH
Confidence 356688887665443322 234566788999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
+++.. .++.|+++||||.+|+.++.+++.+.++|+||++|++|+|+||.+|++++|+|+++||||
T Consensus 158 ~~~~~---------------~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyf 222 (411)
T TIGR03496 158 ARYTE---------------ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYF 222 (411)
T ss_pred hcCCC---------------CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 88762 457889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|++ |+|||+++||+||||+|+|||++++||||+++||||++|+.|++||||||++++++||||+|++|++|+||++|||
T Consensus 223 r~~-G~~Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~GSIT~~~tv~~~~dd~~dpi 301 (411)
T TIGR03496 223 RDQ-GKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEEGKGSITAFYTVLVEGDDQQDPI 301 (411)
T ss_pred HHC-CCCEEEEEeChHHHHHHHHHHHHhcCCCCCccCcCHHHHHHhHHHHHHhcccCCCCcceeEEEEEEccCCCCCCcc
Confidence 998 9999999999999999999999999999999999999999999999999998556899999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
+|+ +|+.+++|||||+..|.||++
T Consensus 302 ~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~ 338 (411)
T TIGR03496 302 ADAARAILDGHIVLSRELAEQGHYPAIDILASISRVM 338 (411)
T ss_pred hhhhcccccEEEEEchhHHhCCCCCccCCCcccccch
Confidence 997 889999999999999999976
No 32
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=2.6e-61 Score=472.71 Aligned_cols=240 Identities=24% Similarity=0.339 Sum_probs=221.4
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+....+ ..+ ....++.+.||+.|.++++++ .||+|+||.|+|+++|||++|||++|+|||+|+.+|
T Consensus 110 ~d~~G~pld~~~~~-~~~---~~~i~~~~p~p~~R~~~~~~l--~TGi~aID~l~~i~~Gqri~I~G~sG~GKStLl~~I 183 (440)
T PRK06820 110 LDGLGAPIDGGPPL-TGQ---WRELDCPPPSPLTRQPIEQML--TTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGML 183 (440)
T ss_pred ECccCCccCCCCCC-Ccc---cccccCCCCChhhcCCchhhc--cCCCceecceEEecCCCEEEEECCCCCChHHHHHHH
Confidence 35678888776543 222 224567888999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
+++. +.+.+||++||||.+|+.++.+.+...+.+.++++|++++|+||.+|++++|+|+++||||
T Consensus 184 ~~~~---------------~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~a~tiAEyf 248 (440)
T PRK06820 184 CADS---------------AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAEYF 248 (440)
T ss_pred hccC---------------CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8876 3568899999999999999999888888999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|++ |+|||+++||+||||+|+|||++++||||+++||||++|+.|++|+||||+. ++||||+|+||++|+||++|||
T Consensus 249 rd~-G~~VLl~~Dsltr~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ERag~~--~~GSIT~i~tVl~~gdD~~dpI 325 (440)
T PRK06820 249 RDR-GKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNS--DRGSITAFYTVLVEGDDMNEPV 325 (440)
T ss_pred HHc-CCCEEEEccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC--CCcceeEEEEEEccCCCCCCcc
Confidence 998 9999999999999999999999999999999999999999999999999995 5899999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
+|+ +|+.+++|||||+..|.||.+
T Consensus 326 ~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~ 362 (440)
T PRK06820 326 ADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIM 362 (440)
T ss_pred hhhhccccceEEEECHHHHhCCCCCccCCcccccccc
Confidence 997 889999999999999999976
No 33
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=3.5e-61 Score=469.97 Aligned_cols=243 Identities=22% Similarity=0.321 Sum_probs=217.2
Q ss_pred cccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHH
Q psy5595 3 AVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIC 82 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~ 82 (293)
+..|++.+....+...+ .+..-++.+.||..|.++++++ .||+++||.++|+++|||++|||++|+|||+|+.+|+
T Consensus 86 D~lG~plD~~~~~~~~~--~~~~i~~~~p~~~~R~~i~~~l--~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~ 161 (418)
T TIGR03498 86 NALGEPIDGKGPLPQGE--RRYPLRASPPPAMSRARVGEPL--DTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLA 161 (418)
T ss_pred CCCCCccCCCCCCCCCc--ceechhhcCCChhhccCccccc--CCccEEEeeeccccCCcEEEEECCCCCChHHHHHHHh
Confidence 45688877665442221 1233456778899999999999 9999999999999999999999999999999999998
Q ss_pred HHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHH
Q psy5595 83 RQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLA 162 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr 162 (293)
++.. .+..+++++|||.+|+.++.+.....+.|+||++|++|+|+||.+|++++|+|+++|||||
T Consensus 162 ~~~~---------------~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyfr 226 (418)
T TIGR03498 162 RNTD---------------ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFR 226 (418)
T ss_pred CCCC---------------CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7762 4577899999999999988775444445999999999999999999999999999999999
Q ss_pred HhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccccc
Q psy5595 163 YQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSAA 242 (293)
Q Consensus 163 ~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~ 242 (293)
++ |+|||+++||+||||+|+||+|+++||||+++||||++|+.|++|+||||+..+++||||+||||++|+||++|||+
T Consensus 227 d~-G~~Vll~~DslTr~A~A~REisl~~gepP~~~gyp~~vf~~l~~L~ERag~~~~~~GSIT~~~tVl~~gdd~~dpi~ 305 (418)
T TIGR03498 227 DQ-GKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFTVLVDGDDHNEPVA 305 (418)
T ss_pred Hc-CCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCchhhhhhhHHHHHhccCCCCCcceeeeEEEeccCCCCCCcch
Confidence 98 99999999999999999999999999999999999999999999999999864468999999999999999999999
Q ss_pred cc-------------ccCCCCCCCCcccccccchhh
Q psy5595 243 RE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 243 ~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
|+ +|+.+++|||||+..|.||.+
T Consensus 306 d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~ 341 (418)
T TIGR03498 306 DAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLA 341 (418)
T ss_pred hhhheeeeeEEEECHHHHhCCCCCccCCcccccccc
Confidence 97 889999999999999999875
No 34
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=4.6e-61 Score=471.41 Aligned_cols=240 Identities=23% Similarity=0.295 Sum_probs=220.9
Q ss_pred cccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHH
Q psy5595 3 AVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIC 82 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~ 82 (293)
+..|++.+....+...+ .....+.+.||..|.+++++| .||+++||.++|+++||+++|||++|+|||+|+.+|+
T Consensus 110 d~~G~piD~~~~~~~~~---~~~i~~~~p~p~~R~~i~e~l--~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia 184 (441)
T PRK09099 110 DGLGEPIDGGGPLDCDE---LVPVIAAPPDPMSRRMVEAPL--PTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFA 184 (441)
T ss_pred cccCCccCCCCCCcccc---ccccccCCCChhhcCCccccc--CCCceeccceeeecCCCEEEEECCCCCCHHHHHHHHh
Confidence 45688887765544322 223466888999999999999 9999999999999999999999999999999999999
Q ss_pred HHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHH
Q psy5595 83 RQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLA 162 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr 162 (293)
++.. .+.+||++||||.+|+++|.+.+.+.+.++|+++|++|+|+||.+|++++|+|+++|||||
T Consensus 185 ~~~~---------------~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyfr 249 (441)
T PRK09099 185 RGTQ---------------CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFR 249 (441)
T ss_pred CCCC---------------CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8763 3578999999999999999999888888999999999999999999999999999999999
Q ss_pred HhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccccc
Q psy5595 163 YQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSAA 242 (293)
Q Consensus 163 ~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~ 242 (293)
++ |||||+++||+||||+|+|||++++||||+++||||++|+.|++||||||.. ++||||+||||++++||++|||+
T Consensus 250 d~-G~~VLl~~DslTr~A~A~REisl~~gepP~~~gyP~~vf~~l~~l~ERag~~--~~GSIT~i~tVl~~~dd~~dpI~ 326 (441)
T PRK09099 250 DR-GLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMG--ETGSITALYTVLAEDESGSDPIA 326 (441)
T ss_pred Hc-CCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHhHHHHHhhcCC--CCcchheeEEEEecCCCcCCcch
Confidence 98 9999999999999999999999999999999999999999999999999963 59999999999999999999999
Q ss_pred cc-------------ccCCCCCCCCcccccccchhh
Q psy5595 243 RE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 243 ~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
|+ +|+.+++|||||+..|.||++
T Consensus 327 d~~~~i~DG~ivLsr~La~~g~yPAIDvl~S~SR~~ 362 (441)
T PRK09099 327 EEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVM 362 (441)
T ss_pred hhhheecceEEEEcHHHHhCCCCCccCCccccCccc
Confidence 96 889999999999999999976
No 35
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=1.6e-60 Score=465.90 Aligned_cols=245 Identities=21% Similarity=0.291 Sum_probs=220.5
Q ss_pred CcccCCCCCCCC-ceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHH
Q psy5595 2 KAVVGEEALTPD-DLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQ 80 (293)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~ 80 (293)
.+..|++.+... .....+-..+...+..+.||..|.++++++ .||+++||.++|+++|||++|||++|+|||||+.+
T Consensus 93 ~d~~G~piD~~~~~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l--~tGi~aid~ll~i~~Gq~i~I~G~sG~GKTTLl~~ 170 (428)
T PRK08149 93 LDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPIREPL--ITGVRAIDGLLTCGVGQRMGIFASAGCGKTSLMNM 170 (428)
T ss_pred eCCCCCCcCCCCCCcccccccceeehhccCCcchhccCccccc--cCCcEEEeeeeeEecCCEEEEECCCCCChhHHHHH
Confidence 356688777654 111110012234556788899999999999 99999999999999999999999999999999999
Q ss_pred HHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 81 ICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 81 I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
|+++.. .+.+|+++||+|.+++.++.+++.+.+.++|+++|++++|+||.+|++++|+|+++|||
T Consensus 171 i~~~~~---------------~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~ 235 (428)
T PRK08149 171 LIEHSE---------------ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEY 235 (428)
T ss_pred HhcCCC---------------CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHHH
Confidence 998763 45778999999999999999999888889999999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVS 240 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dp 240 (293)
||++ ||||||++|||||||+|+|||++++||||+++||||++|+.|++||||||+.+ +||||+|++|++|+||++||
T Consensus 236 fr~~-G~~Vll~~DslTr~A~A~rEi~l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~~--~GSIT~~~tVl~~~dD~~dp 312 (428)
T PRK08149 236 FRDQ-GKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATL--AGSITAFYTVLLESEEEPDP 312 (428)
T ss_pred HHHc-CCCEEEEccchHHHHHHHHHhHhhcCCCCcccccCccHHHHHHHHHHhccCCC--CCCceEEEEEEecCCCCCCC
Confidence 9998 99999999999999999999999999999999999999999999999999974 79999999999999999999
Q ss_pred cccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 241 AARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 241 i~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
|+|+ +|+.+++|||||+..|.||.+.
T Consensus 313 i~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~ 351 (428)
T PRK08149 313 IGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFG 351 (428)
T ss_pred chhhhheeccEEEEEcHHHHhCCCCCcccCccccccchh
Confidence 9996 8899999999999999998753
No 36
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.9e-61 Score=468.93 Aligned_cols=243 Identities=20% Similarity=0.236 Sum_probs=223.3
Q ss_pred cccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHH
Q psy5595 3 AVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIC 82 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~ 82 (293)
+..|++.+....+...+ +....+.+.||..|.++++++ +||||+||+|+|+++||+++|||++|+|||+|+.+|+
T Consensus 122 d~~G~piDg~~~~~~~~---~~~i~~~~~~p~~R~~i~e~l--~TGiraID~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia 196 (455)
T PRK07960 122 DGSGKPLDGLPAPDTGE---TGALITPPFNPLQRTPIEHVL--DTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMA 196 (455)
T ss_pred CCCccccCCCCCCCCCc---cccccCCCcChHHhcccccch--hccceeeeecccccCCcEEEEECCCCCCccHHHHHHh
Confidence 45688888765544322 334667889999999999999 9999999999999999999999999999999999999
Q ss_pred HHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHH
Q psy5595 83 RQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLA 162 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr 162 (293)
++. +.+.+|+++||+|.+++.++++++.+.+.++++++|++++|+||.+|++++++|+++|||||
T Consensus 197 ~~~---------------~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~a~tiAEyfr 261 (455)
T PRK07960 197 RYT---------------QADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR 261 (455)
T ss_pred CCC---------------CCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 876 24678889999999999999988888888999999999999999999999999999999999
Q ss_pred HhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccccc
Q psy5595 163 YQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSAA 242 (293)
Q Consensus 163 ~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~ 242 (293)
++ |+|||+++||+||||+|+|||++++||||+++||||++|+.|++||||||+..+++||||+|++|++|+||++|||+
T Consensus 262 d~-G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gypp~~f~~l~~l~ERag~~~~~~GSIT~i~tVlv~~dD~~dpi~ 340 (455)
T PRK07960 262 DR-GQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIA 340 (455)
T ss_pred Hc-CCCeEEEecchhHHHHHHHHHHHhcCCCCccccCCcchhhhhhHHHHHHhcCCCCCeeeeeEEEEEEcCCCCCcchH
Confidence 98 99999999999999999999999999999999999999999999999999975468999999999999999999999
Q ss_pred cc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 243 RE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 243 ~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
|+ +|+.+++|||||+..|.||.+.
T Consensus 341 d~~~~i~dg~ivLsr~la~~g~yPAID~l~S~SR~~~ 377 (455)
T PRK07960 341 DSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMT 377 (455)
T ss_pred HHhhhhcceEEEECHHHHhCCCCCccCcCcccCcCcc
Confidence 97 8899999999999999999764
No 37
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.8e-60 Score=464.74 Aligned_cols=240 Identities=23% Similarity=0.344 Sum_probs=216.8
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+....+... .....++.+.||..|.++++++ .||+|+||.++|+++|||++|||++|+|||+|+.+|
T Consensus 83 id~~G~plD~~~~~~~~---~~~~i~~~~p~~~~R~~~~~~~--~tGi~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i 157 (413)
T TIGR03497 83 LDGLGRPLDGEGPIIGE---EPYPLDNPPPNPLKRPRIRDPL--ETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMI 157 (413)
T ss_pred EcCCCCcccCCCCCCCC---ccccccCCCcChHHccchhhhc--cccceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 46778988876554322 2224556788899999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHh-hhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQD-FEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~-l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
+++.. .+..|+++||||.+|+.++.++ +.+.+ ++|+++|++|+|+||.+|++++++|+++|||
T Consensus 158 ~~~~~---------------~~~gvi~~~Ger~~ev~e~~~~~l~~~~-~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEy 221 (413)
T TIGR03497 158 ARNAK---------------ADINVIALIGERGREVRDFIEKDLGEEG-LKRSVVVVATSDQPALMRLKAAFTATAIAEY 221 (413)
T ss_pred hCCCC---------------CCeEEEEEEccchHHHHHHHHHHhcccc-cceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 98763 4577899999999888766655 55555 8999999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVS 240 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dp 240 (293)
||++ |+||||++|||||||+|+||||+++||||+++||||++|+.|++|+||||+ +++||||+||+|++|+||++||
T Consensus 222 fr~~-G~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~--~~~GSIT~~~tVl~~gdD~~dp 298 (413)
T TIGR03497 222 FRDQ-GKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGN--SQKGSITGFYTVLVDGDDMNEP 298 (413)
T ss_pred HHHC-CCCEEEEEcCcHHHHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcC--CCCcceeEEEEEEccCCCCCCc
Confidence 9998 999999999999999999999999999999999999999999999999999 3699999999999999999999
Q ss_pred cccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 241 AARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 241 i~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
|+|+ +++.+++|||||+..|.||.+
T Consensus 299 i~~~~~si~dg~ivLsr~la~~g~~PAId~~~S~SR~~ 336 (413)
T TIGR03497 299 IADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVM 336 (413)
T ss_pred chhhccccccEEEEECHHHHhCCCCCccCCccccccCc
Confidence 9997 889999999999999999975
No 38
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=2.3e-60 Score=451.35 Aligned_cols=241 Identities=21% Similarity=0.310 Sum_probs=222.7
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..||+.+....+... .+...++.+.||..|.++++++ .||+++||.++|+++|||++|||++|+|||+|+.+|
T Consensus 15 ~d~~G~pid~~~~~~~~---~~~~i~~~~~~~~~R~~~~~~l--~tGi~aiD~l~~i~~Gqri~I~G~sG~GKTtLl~~I 89 (326)
T cd01136 15 LDAFGEPLDGKGPLGKE---VRYPLLRTPPNPLKRRPIDEVL--PTGVRAIDGLLTVGKGQRLGIFAGSGVGKSTLLGMI 89 (326)
T ss_pred ECCCCcccCCCCCCCCC---ccccccCCCcCHHHhccceeEc--CCCcEEEeeeeEEcCCcEEEEECCCCCChHHHHHHH
Confidence 46779999877664332 2334567888999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
+++.. .+.+++++||||.+++.++.+.....+.++|+++|++++|+||.+|++++++|+++||||
T Consensus 90 a~~~~---------------~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEyf 154 (326)
T cd01136 90 ARGTT---------------ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYF 154 (326)
T ss_pred hCCCC---------------CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 98763 457899999999999999998888888899999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|++ |||||+++||+||||+|+||+++++||||+++|||+++|+.|++||||||+.+ +||||+|++|++|+||++|||
T Consensus 155 r~~-g~~Vll~~Dsltr~a~A~rei~~~~ge~p~~~gyp~~~~~~~~~l~ERag~~~--~GSIT~i~tv~~~gdd~~dpi 231 (326)
T cd01136 155 RDQ-GKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSD--KGSITAFYTVLVEGDDLNEPI 231 (326)
T ss_pred HHc-CCCeEEEeccchHHHHHHHHHHHhcCCCCCcCCcChHHHHHhHHHHHHhcCCC--CCCeeeeeeeeecCCCCCcch
Confidence 998 99999999999999999999999999999999999999999999999999974 699999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
+++ +++.+++|||+|+..|.||.+
T Consensus 232 ~~~~~~~~dg~ivL~r~la~~g~~PAid~~~S~SR~~ 268 (326)
T cd01136 232 ADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLM 268 (326)
T ss_pred HHhhhhccceEEEEcCcHHHcCCCCCcccccccccCc
Confidence 996 889999999999999999975
No 39
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=2.3e-60 Score=465.32 Aligned_cols=240 Identities=22% Similarity=0.289 Sum_probs=218.6
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
++..|++.+....+ .. .....++.+.||+.|..+++++ .||+++||.|+||++|||++|||++|+|||+|+.+|
T Consensus 102 id~~G~pld~~~~~-~~---~~~~i~~~~p~~~~r~~v~~~l--~tGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I 175 (433)
T PRK07594 102 IDGFGRPLDGRELP-DV---CWKDYDAMPPPAMVRQPITQPL--MTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAML 175 (433)
T ss_pred EcccCCCcCCCCCC-cc---cccccccCCCCceeccCHhhee--CCCceeeeeeeecCCCCEEEEECCCCCCccHHHHHh
Confidence 34568888766542 11 2223567888999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
+++.. .+.+||++||||.+|+.++.+.+.+.+.++++++|++++|+|+.+|++++|+|+++||||
T Consensus 176 ~~~~~---------------~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEyf 240 (433)
T PRK07594 176 CNAPD---------------ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF 240 (433)
T ss_pred cCCCC---------------CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 88763 456899999999999988777777788899999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|++ |+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||. +++||||+||+|++|+||++|||
T Consensus 241 rd~-G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~--~~~GSIT~~~tVl~~gdD~~dpi 317 (433)
T PRK07594 241 RDN-GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM--GEKGSITAFYTVLVEGDDMNEPL 317 (433)
T ss_pred HHC-CCcEEEEEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHhhcC--CCCcchheeeeeeecCCCCCCch
Confidence 998 999999999999999999999999999999999999999999999999996 36999999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
+|+ +|+.+++|||||+..|.||..
T Consensus 318 ~d~~~~ilDG~IvLsr~la~~g~yPAIDvl~S~SR~~ 354 (433)
T PRK07594 318 ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVF 354 (433)
T ss_pred HHHhhhhcceEEEEcHHHHhCCCCCccCCcccccccc
Confidence 997 889999999999999999875
No 40
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=1.6e-58 Score=452.06 Aligned_cols=239 Identities=19% Similarity=0.238 Sum_probs=213.8
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
++..|++.+....+..-++ ....+.+.||..|.+++++| +||||+||+|+||++|||++|||++|+|||+|+.+|
T Consensus 103 ~d~~G~pld~~~~~~~~~~---~pi~~~~~~~~~R~~i~e~l--~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTLL~~I 177 (434)
T PRK05922 103 LDGFGNPLDGKEQLPKTHL---KPLFSSPPSPMSRQPIQEIF--PTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTI 177 (434)
T ss_pred eCCCCCccCCCCCCCccce---eecccCCCChhhcCCcceec--CCCceeecceEEEcCCcEEEEECCCCCChHHHHHHH
Confidence 3567888887766553222 23467888999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
+++. +.+.++|++||||.+++.++.+.+.+...+++|++|++|+|+||.+|++++++|+++||||
T Consensus 178 a~~~---------------~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyf 242 (434)
T PRK05922 178 AKGS---------------KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYF 242 (434)
T ss_pred hccC---------------CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 9886 3578999999999988877777776777789999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|++ |+|||+++||+||||+|+|||++++||||+++||||++|+.|++||||||+. ++||||+|++|++++| ..|||
T Consensus 243 rd~-G~~VLl~~DslTR~A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ERag~~--~~GSIT~~~tVl~~~~-~~dpi 318 (434)
T PRK05922 243 RDQ-GHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNN--DKGSITALYAILHYPN-HPDIF 318 (434)
T ss_pred HHc-CCCEEEeccchhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhcCC--CCcceeEEEEEEecCC-CCCcc
Confidence 998 9999999999999999999999999999999999999999999999999994 5899999999999998 67888
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
+|+ +++.. +|||||+..|-||-.
T Consensus 319 ~d~~rsilDGhIvLsr~la~~-~~PAIDvl~S~SR~~ 354 (434)
T PRK05922 319 TDYLKSLLDGHFFLTPQGKAL-ASPPIDILTSLSRSA 354 (434)
T ss_pred ccchhhhcCcEEEEcHHHHhC-CCCCcCCccccccCC
Confidence 776 46554 599999999998854
No 41
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=9.2e-59 Score=454.12 Aligned_cols=242 Identities=23% Similarity=0.281 Sum_probs=218.2
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+....+...+ .......+.||..|.++++++ .||+++||.++|+++||+++|||++|+|||+|+.+|
T Consensus 103 iD~~G~plD~~g~~~~~~---~~~i~~~~~~~~~R~~i~~~l--~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i 177 (434)
T PRK08472 103 VDPLGRPIDGKGAIDYER---YAPIMKAPIAAMKRGLIDEVF--SVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMI 177 (434)
T ss_pred ECCCCCcccCCCCCCccc---ccccccCCCCHHHcCCcceec--cchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHH
Confidence 356788888776654332 234567788999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
++++. .+++||++||||.++++++.+... .+.++++++|++|+|+||++|++++++|+++||||
T Consensus 178 ~~~~~---------------~~v~vi~~iGergrev~e~~~~~l-~~~l~~tvvV~atsddsp~~R~~~~~~a~~iAEyF 241 (434)
T PRK08472 178 VKGCL---------------APIKVVALIGERGREIPEFIEKNL-GGDLENTVIVVATSDDSPLMRKYGAFCAMSVAEYF 241 (434)
T ss_pred hhccC---------------CCEEEEEeeCccchhHHHHHHHHh-cCcccceEEEEECCCCCHHHhhHHHHHHHHHHHHH
Confidence 98873 468999999999988776655433 34489999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|++ |+||||++||+||||+|+|||++++||||+++||||++|+.|++||||||+.+ ++||||+|++|++|+||++|||
T Consensus 242 rd~-G~~Vll~~DslTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~-g~GSIT~~~tVlv~gdD~~dpi 319 (434)
T PRK08472 242 KNQ-GLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEE-GKGSITAFFTVLVEGDDMSDPI 319 (434)
T ss_pred HHc-CCCEEEecccchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhccCC-CCceeeEeEEEEecCCCCCCCc
Confidence 998 99999999999999999999999999999999999999999999999999975 4899999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
+|+ +|+.+++|||||+..|.||.+.
T Consensus 320 ~d~~~~i~Dg~ivLsr~la~~g~~PAIDvl~S~SR~~~ 357 (434)
T PRK08472 320 ADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMN 357 (434)
T ss_pred hHHhhhhcceEEEEcHHHHhCCCCCccCCccccCccch
Confidence 997 8899999999999999998753
No 42
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.1e-58 Score=448.26 Aligned_cols=243 Identities=23% Similarity=0.331 Sum_probs=216.5
Q ss_pred cccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHH
Q psy5595 3 AVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIC 82 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~ 82 (293)
+..|++.+....+...+ .+...++.+.||..|..+++++ .||+++||.|+||++|||++|||++|+|||+|+.+|+
T Consensus 111 d~~G~piDg~~~~~~~~--~~~~i~~~~p~~~~r~~v~~~l--~TGi~aID~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia 186 (450)
T PRK06002 111 NALGEPIDGLGPLAPGT--RPMSIDATAPPAMTRARVETGL--RTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLA 186 (450)
T ss_pred CCCCcCCCCCCCCCCCc--ceeeccCCCCCCeEeecceEEc--CCCcEEeeeeceecCCcEEEEECCCCCCHHHHHHHHh
Confidence 56788887665544322 1234667888999999999999 9999999999999999999999999999999999888
Q ss_pred HHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHH
Q psy5595 83 RQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLA 162 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr 162 (293)
+... .+.++|+++|||.+++.++.+..... .+++++.|++++|+||.+|++++++|+++|||||
T Consensus 187 ~l~~---------------pd~gvv~liGergrev~e~~~~~l~~-~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfr 250 (450)
T PRK06002 187 RADA---------------FDTVVIALVGERGREVREFLEDTLAD-NLKKAVAVVATSDESPMMRRLAPLTATAIAEYFR 250 (450)
T ss_pred CCCC---------------CCeeeeeecccCCccHHHHhHHHHHH-hhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7652 45789999999999988776543332 3778999999999999999999999999999999
Q ss_pred HhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccccc
Q psy5595 163 YQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSAA 242 (293)
Q Consensus 163 ~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~ 242 (293)
++ |+|||+++||+||||+|+|||++++||||+++||||++|+.|++|+||||+..+++||||+||||++|+||++|||+
T Consensus 251 d~-G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI~ 329 (450)
T PRK06002 251 DR-GENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVA 329 (450)
T ss_pred Hc-CCCEEEeccchHHHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCccH
Confidence 98 99999999999999999999999999999999999999999999999999964468999999999999999999999
Q ss_pred cc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 243 RE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 243 ~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
|+ +|+.+++|||||+..|.||.+.
T Consensus 330 d~~~~i~Dg~ivLsr~la~~g~~PAIDv~~S~SR~~~ 366 (450)
T PRK06002 330 DSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLAR 366 (450)
T ss_pred HHHHhhcceEEEEcHHHHhCCCCCccCCccccCcccc
Confidence 97 8899999999999999999764
No 43
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=2.6e-57 Score=445.64 Aligned_cols=243 Identities=21% Similarity=0.300 Sum_probs=219.9
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
++..|++.+.....+..+ ......+.+.||..|.++++++ .||+++||.++||++|||++|||++|+|||+|+.+|
T Consensus 108 id~~G~plD~~~~~~~~~--~~~~i~~~~~~p~~R~~~~e~l--~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I 183 (440)
T TIGR01026 108 LDGLGKPIDGKGKFLDNV--ETEGLITAPINPLKRAPIREIL--STGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMI 183 (440)
T ss_pred ecCCCcccCCCCCCCCCc--cccccccCCCChHHccCccccc--cceeeeeeeccccCCCcEEEEECCCCCCHHHHHHHH
Confidence 456789888766333222 1223456788999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
+++.. .+..++++||+|.+++.++.+++...+.++|+++|++++|+||.+|++++++|+++||||
T Consensus 184 ~~~~~---------------~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~f 248 (440)
T TIGR01026 184 ARNTE---------------ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAEYF 248 (440)
T ss_pred hCCCC---------------CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 98762 467899999999999998887777667799999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|++ |+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+|||+. +++||||+|+||++++||++|||
T Consensus 249 rd~-G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~--~~~GSIT~i~tVl~~~~d~~dpi 325 (440)
T TIGR01026 249 RDQ-GKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGA--SGKGSITAFYTVLVEGDDMNEPI 325 (440)
T ss_pred HHC-CCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhcc--CCCCeeeEEEEEEccCcCCCcch
Confidence 998 999999999999999999999999999999999999999999999999996 36899999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
+|+ +++.+++|||||+..|.||...
T Consensus 326 ~d~~~~i~dG~ivLsr~la~~~~~PAId~~~S~SR~~~ 363 (440)
T TIGR01026 326 ADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLMT 363 (440)
T ss_pred hhhhccccceEEEEecchhhCCccCccCCCcccccCcc
Confidence 996 8899999999999999999763
No 44
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=9.2e-57 Score=440.13 Aligned_cols=243 Identities=25% Similarity=0.344 Sum_probs=221.3
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+....+...+. ......+.+.||..|.++++++ .||+++||.++|+++||+++|+|++|+|||+|+.+|
T Consensus 89 iD~~G~plD~~~~~~~~~~-~~~pi~~~~~~~~~R~~i~~~l--~tG~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I 165 (422)
T TIGR02546 89 LDGFGRPLDGKGELPAGEI-ETRPLDADPPPPMSRQPIDQPL--PTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMI 165 (422)
T ss_pred eCCCCCcccCCCCCCCCCc-eeeeccCCCcCHHHccCccccc--CCCceeehhhccccCCCEEEEECCCCCChHHHHHHH
Confidence 3567888877665433210 1223557888999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
+++. +.+.++|++||+|.+++.++.+.....+.++++++|++++|+|+.+|++++++|+++||||
T Consensus 166 ~~~~---------------~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE~f 230 (422)
T TIGR02546 166 ARGA---------------SADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYF 230 (422)
T ss_pred hCCC---------------CCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHHHHHHHHHHH
Confidence 9876 2568999999999999998888888888899999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
|++ |+|||+++||+||||+|+||+++++||||+++||||++|+.|++||||||+ .++||||+|+||++|+||++|||
T Consensus 231 ~~~-g~~Vl~~~Dsltr~a~A~rei~l~~ge~P~~~gyp~~~f~~l~~l~ERag~--~~~GSIT~~~tv~~~~dd~~~pi 307 (422)
T TIGR02546 231 RDQ-GKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGN--GEKGSITALYTVLVEGDDMNDPI 307 (422)
T ss_pred HHC-CCcEEEEEeCchHHHHHHHHHHHhcCCCCcccccChhHHHHhHHHHHHhcC--CCCCceeEEEEEeccCCCCCCCc
Confidence 998 999999999999999999999999999999999999999999999999998 36999999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
+|+ +|+.+++|||||+..|.||+.
T Consensus 308 ~~~~~~i~dg~i~Lsr~la~~g~yPAId~~~S~SR~~ 344 (422)
T TIGR02546 308 ADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVM 344 (422)
T ss_pred hhhhhccccEEEEEcHHHHhCCCCCccCCccccccch
Confidence 986 889999999999999999975
No 45
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=7.5e-57 Score=440.66 Aligned_cols=242 Identities=18% Similarity=0.272 Sum_probs=217.1
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+....+..-+ .....+.+.||..|.+++++| +||+++||.++|+++||+++|||++|+|||||+.+|
T Consensus 101 ~d~~G~pld~~~~~~~~~---~~~~~~~~~~p~~R~~~~~~l--~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I 175 (434)
T PRK07196 101 INGLGEPLDGKGQLGGST---PLQQQLPQIHPLQRRAVDTPL--DVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMI 175 (434)
T ss_pred eCcCCCCcCCCCCCCCCc---eeeccCCCCChHHhccccccc--ccceeeccceEeEecceEEEEECCCCCCccHHHHHH
Confidence 355688887665543222 223556789999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHh-hhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQD-FEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~-l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
+++.. .+.+|+++||++.+++.++.++ +.+.+ +.|++++++++|.|+.+|+.+++.++++|||
T Consensus 176 ~g~~~---------------~dv~vig~IGerg~ev~ef~~~~l~~~g-l~rsvvv~~~~d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 176 TRYTQ---------------ADVVVVGLIGERGREVKEFIEHSLQAAG-MAKSVVVAAPADESPLMRIKATELCHAIATY 239 (434)
T ss_pred hcccC---------------CCeEEEEEEeeecHHHHHHHHHHhhhcc-cceEEEEEecCCCChhhhHHHHHHHHHHHHH
Confidence 88763 3567889999999888877754 65555 8899999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVS 240 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dp 240 (293)
|+++ |+|||+++||+||||+|+|||++++||||+++||||++|+.|++||||||+.+ ++||||+||+|++|+||++||
T Consensus 240 fr~~-g~~Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~-~~GSIT~~~tVl~~~dD~~dp 317 (434)
T PRK07196 240 YRDK-GHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSS-GNGTMTAIYTVLAEGDDQQDP 317 (434)
T ss_pred hhhc-cCCEEEeecchhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhhcCC-CCEEeeeeeEEEccCCCCCCc
Confidence 9998 99999999999999999999999999999999999999999999999999985 579999999999999999999
Q ss_pred cccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 241 AARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 241 i~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
|+|+ +|+.+++|||||+..|.||...
T Consensus 318 i~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~ 356 (434)
T PRK07196 318 IVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMS 356 (434)
T ss_pred hhHhhhhhcceEEEEcHHHHhCCCCCccCCccccCccch
Confidence 9997 8899999999999999998754
No 46
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1e-56 Score=426.19 Aligned_cols=246 Identities=21% Similarity=0.314 Sum_probs=219.7
Q ss_pred CCcccCCCCCCCCceeE--EEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHH
Q psy5595 1 MKAVVGEEALTPDDLLY--LEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIA 78 (293)
Q Consensus 1 ~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~ 78 (293)
|++|.||+.+....+-. .++...+.+. |- -.....-.|+| +||||+||+|+|+.||.|++|||++|+|||.|+
T Consensus 90 i~nvlG~~iD~~~~~~~~~~~~~~Ih~~~--p~-~~e~~~~~EIl--eTGIKVIDll~P~~kGgKiGLFGGAGVGKTVl~ 164 (468)
T COG0055 90 IFNVLGEPIDEKGPIKAEDFEKWPIHRKA--PS-FEELSTKTEIL--ETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLI 164 (468)
T ss_pred chhccCCcccccCCCCccccceeeccCCC--Cc-hhhcccchhhh--hhCceEEEEecccccCceeeeeccCCccceeeH
Confidence 68999999887555432 2443333221 11 12233445788 999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHH
Q psy5595 79 AQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158 (293)
Q Consensus 79 ~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiA 158 (293)
++++++.++. ++.++||+++|||.+|.++++++|++.|++++|++|++++|+||+.|++++.+++|+|
T Consensus 165 ~ELI~Nia~~------------h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~A 232 (468)
T COG0055 165 QELINNIAKE------------HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMA 232 (468)
T ss_pred HHHHHHHHHH------------cCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehhhhhhHH
Confidence 9999999762 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcc
Q psy5595 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFK 238 (293)
Q Consensus 159 Eyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~ 238 (293)
|||||++|+|||+++|+++||.+|.+|+|.++||+||..||+|.|-+++..|.||.... ++||||++++|++|+||++
T Consensus 233 EyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERItst--k~GSITSiQavyvPaDDlT 310 (468)
T COG0055 233 EYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST--KKGSITSVQAVYVPADDLT 310 (468)
T ss_pred HHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHhcC--CCCceEEEEEEEeccccCC
Confidence 99999999999999999999999999999999999999999999999999999999884 6899999999999999999
Q ss_pred cccccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 239 VSAARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 239 dpi~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
||.|.. .++...+|||+||..|.|+..
T Consensus 311 DPapattFaHLDat~vLsR~ia~~GIyPAvDPL~StSr~l 350 (468)
T COG0055 311 DPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRAL 350 (468)
T ss_pred CcchhhhhhhcccceeeeHhHHhcCCCcccCccccccccc
Confidence 999874 788999999999999999854
No 47
>KOG1351|consensus
Probab=100.00 E-value=1.7e-54 Score=401.45 Aligned_cols=260 Identities=71% Similarity=1.013 Sum_probs=244.8
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
|+=-|.+++.-..+|.-+|.. .+|-|+|||.|++|+|++ +|||.+||.|++|+||||++||+.+|.+++.++++|
T Consensus 109 fngsgkpid~gp~vl~edyld---i~gqpinp~~riypeemi--qtgis~idvmnsiargqkipifsaaglphneiaaqi 183 (489)
T KOG1351|consen 109 FNGSGKPIDKGPPVLAEDYLD---INGQPINPYARIYPEEMI--QTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 183 (489)
T ss_pred hcCCCCccCCCCCcChHHhhc---cCCCcCCcccccChHHHH--HhCchHHhhhhHHhccCccceeecCCCChhHHHHHH
Confidence 344466666666666655654 468999999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
|||++..+...|++...+.+++.+||+++|...|.++||++++.++|.|+++++|.+-+++|..+|...|+.|++.|||+
T Consensus 184 crqaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~dfeengsm~~v~lflnlandptieriitprlalt~aefl 263 (489)
T KOG1351|consen 184 CRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEFL 263 (489)
T ss_pred HHhcCccccCCcccccccccceeeeehhhcccHHHHHHHHhhHHhcCCccceEEEEecCCCCchhhhcchhhhHhHHHHH
Confidence 99999988889999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
+++++||||+|+.|++.||+|+||+|.+..|.|||+||||+||++++.+|||||++++++||||.+|++++|.||++|||
T Consensus 264 ayq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdlatiyeragrvegr~gsitqipiltmpnddithpi 343 (489)
T KOG1351|consen 264 AYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPI 343 (489)
T ss_pred HHhhcCeEEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhHHHHHHHhcccccCCCceeeeeeEecCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-------------cccCCCCCCCCcccccccchhhh
Q psy5595 242 AR-------------EEVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 242 ~~-------------~~la~~r~~Pai~~~~~~s~~~r 266 (293)
|| .++..+.+||-++...|-|+.++
T Consensus 344 pdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmk 381 (489)
T KOG1351|consen 344 PDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMK 381 (489)
T ss_pred CcccceeecceEEEehhhhcccCCCCcccchhHHHHHH
Confidence 98 28889999999999999998876
No 48
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.6e-53 Score=424.47 Aligned_cols=224 Identities=17% Similarity=0.181 Sum_probs=201.2
Q ss_pred ceeEEEecce----------eecccccCCCccccCCC-CccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHH
Q psy5595 14 DLLYLEFLTK----------FEKNFVSQEGERSFTPR-DLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIC 82 (293)
Q Consensus 14 ~~~~~e~~~~----------~~~~~~~~~p~~r~~p~-e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~ 82 (293)
.|+.|+..+. .+....|.+|..|...+ +++ .||+|+||+|+|||||||++||||+|+|||+|+++|+
T Consensus 360 ~l~~v~~vNg~~~e~~~~r~~F~~Ltp~~P~~R~~le~e~~--~~giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IA 437 (672)
T PRK12678 360 PLVRLDSVNGMSPEEAKKRPEFGKLTPLYPNERLRLETEPK--KLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIA 437 (672)
T ss_pred eeeeEeeeCCCChHHhccCCCcccCCCCChHHhcccccCcc--cccceeeeeecccccCCEeEEeCCCCCCHHHHHHHHH
Confidence 5666665433 34677889999999998 888 9999999999999999999999999999999999999
Q ss_pred HHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHH
Q psy5595 83 RQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLA 162 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr 162 (293)
++..+ |+ .+..|||++||||+||+++|.+.+ +..||++|+|+||..|++++|+++++||||+
T Consensus 438 n~i~~---------n~--~~~~~ivvLIgERpeEVtdm~rsV-------kgeVVasT~D~p~~~~~~~a~~ai~~Ae~fr 499 (672)
T PRK12678 438 NAITT---------NN--PECHLMVVLVDERPEEVTDMQRSV-------KGEVIASTFDRPPSDHTTVAELAIERAKRLV 499 (672)
T ss_pred HHHhh---------cC--CCeEEEEEEEeCchhhHHHHHHhc-------cceEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99854 23 357888999999999999986654 3359999999999999999999999999999
Q ss_pred HhcCCceEEEecchhHHHHHHHHHhhhcCC-----CCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCC-
Q psy5595 163 YQCEKHVLVILTDMSSYAEALREVSAAREE-----VPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDD- 236 (293)
Q Consensus 163 ~~~G~~VLli~Dsltr~a~A~reisl~~ge-----~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d- 236 (293)
++ |+|||||+|||||||+||||+++..|+ +|+..+|||++|+.+++++| ++||||+|+||++++||
T Consensus 500 e~-G~dVlillDSlTR~ArAyrev~~~sGr~lSGG~d~~a~ypP~~F~~~AR~iE-------~gGSLTii~TvLVETGS~ 571 (672)
T PRK12678 500 EL-GKDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIE-------NGGSLTIIATALVETGSK 571 (672)
T ss_pred Hc-CCCEEEEEeCchHHHHHHHHhhcCCCCccCCCCchhhccCccHHHHHHHhhc-------cCccceeeEEEEeccCCc
Confidence 98 999999999999999999999999999 68899999999999999988 38999999999999655
Q ss_pred cccccccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 237 FKVSAARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 237 ~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
+++||+++ +|+.+++|||||+.+|+|+.+
T Consensus 572 mDd~Ifeefkgtgn~elvLsR~LAerrifPAIDv~~S~SR~e 613 (672)
T PRK12678 572 MDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVNASGTRKE 613 (672)
T ss_pred cCcchHHHHhhccCceeeECHHHHhCCCCCccCCCcCccccc
Confidence 88999975 899999999999999999975
No 49
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=3.9e-53 Score=408.42 Aligned_cols=229 Identities=16% Similarity=0.209 Sum_probs=208.4
Q ss_pred ceeEEEecce----------eecccccCCCccccCCCC--ccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 14 DLLYLEFLTK----------FEKNFVSQEGERSFTPRD--LIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 14 ~~~~~e~~~~----------~~~~~~~~~p~~r~~p~e--~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
++++|+..+. .+++..|.||..|...++ ++ .||+|+||+|+|||||||++||||+|+|||+|+++|
T Consensus 112 ~l~~v~~vng~~~~~~~~r~~f~~l~p~~p~~R~~le~~~~~--~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~I 189 (416)
T PRK09376 112 ALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRLETGNPE--DLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNI 189 (416)
T ss_pred ceEEEeeeCCCCHHHhcCCCCcccCCCCChhhcccccCCCCc--ccceeeeeeecccccCceEEEeCCCCCChhHHHHHH
Confidence 5666765433 447888999999999988 67 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
+++... +| .+.+|++++||||++++.++.+.+. .+||++|+|+||..|+++++.+++.||||
T Consensus 190 an~I~~---------nh--FDv~~~VvLIgER~~EVtdiqrsIl-------g~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 190 ANSITT---------NH--PEVHLIVLLIDERPEEVTDMQRSVK-------GEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred HHHHHh---------hc--CCeEEEEEEeCCchhHHHHHHHHhc-------CcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 998853 11 3567899999999999999999884 27999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEec-CCCcccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMP-NDDFKVS 240 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~-~~d~~dp 240 (293)
+++ |+||||++||+|||++|+||+++++||+|+ .||+++.|+.+++|+|||++++ ++||||+|+|++++ +++|+||
T Consensus 252 ~e~-G~dVlL~iDsItR~arAqrev~~~sG~~~s-gG~~~~~~~~~~r~f~~Arn~e-~~GSlT~i~T~LvetGs~mdd~ 328 (416)
T PRK09376 252 VEH-GKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGAARNIE-EGGSLTIIATALIDTGSRMDEV 328 (416)
T ss_pred HHc-CCCEEEEEEChHHHHHHHHhhhhccCCCCC-CCCChhHhhhhHHHHHhhcCCC-CCcceEEEEEEEecCCCCCCcc
Confidence 987 999999999999999999999999999999 9999999999999999999986 59999999999999 5559999
Q ss_pred cccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 241 AARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 241 i~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
|+++ +||++|+|||||+.+|+||.+
T Consensus 329 I~ee~kg~~n~~ivLdR~lA~~r~fPAIDi~~S~sR~~ 366 (416)
T PRK09376 329 IFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKE 366 (416)
T ss_pred HHHHHhhhcCceEeECHHHHhcCCCCccCccccccccc
Confidence 9986 899999999999999999964
No 50
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.7e-53 Score=414.39 Aligned_cols=240 Identities=22% Similarity=0.331 Sum_probs=214.4
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+..|++.+....+...+ ....++.+.||..|..+++++ .||+|+||.++|+++|||++|||++|+|||+|+.+|
T Consensus 102 ~d~~G~piD~~~~~~~~~---~~~i~~~~~~~~~r~~i~~~l--~TGiraID~ll~I~~Gqri~I~G~sG~GKTtLl~~I 176 (432)
T PRK06793 102 LSANGEVLNEEAENIPLQ---KIKLDAPPIHAFEREEITDVF--ETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMI 176 (432)
T ss_pred ECcCCccCCCCCCCCCcc---cccccCCCCCchheechhhcc--CCCCEEEeccceecCCcEEEEECCCCCChHHHHHHH
Confidence 356788888765443322 223556788899999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHH-HHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFF-KQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~-~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
+++.. .+..+++++|||.++++++ .+.+.+.| ++|+++|++++|+|+++|++++++|+++|||
T Consensus 177 a~~~~---------------~~~gvI~~iGerg~ev~e~~~~~l~~~g-l~~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 177 AKNAK---------------ADINVISLVGERGREVKDFIRKELGEEG-MRKSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred hccCC---------------CCeEEEEeCCCCcccHHHHHHHHhhhcc-cceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 98763 3466888999998777655 55777777 9999999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVS 240 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dp 240 (293)
||++ |+|||+++||+||||+|+||++++++|||+. |||+++|+.+++|+|||++. ++||||++|+|++|+||++||
T Consensus 241 fr~~-G~~VLlilDslTr~a~A~reisl~~~e~p~~-G~~~~~~s~l~~L~ERag~~--~~GSiT~~~tvlv~~dD~~dp 316 (432)
T PRK06793 241 FRDQ-GNNVLLMMDSVTRFADARRSVDIAVKELPIG-GKTLLMESYMKKLLERSGKT--QKGSITGIYTVLVDGDDLNGP 316 (432)
T ss_pred HHHc-CCcEEEEecchHHHHHHHHHHHHHhcCCCCC-CeeeeeeccchhHHHHhccC--CCcceEEEEEEEecCCCCCCc
Confidence 9998 9999999999999999999999999999996 99999999999999999996 489999999999999999999
Q ss_pred cccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 241 AARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 241 i~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
|+|+ +|+.+++|||||+..|.||.+.
T Consensus 317 I~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~ 355 (432)
T PRK06793 317 VPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIME 355 (432)
T ss_pred chHHhhhhcceEEEEcHHHHhCCCCCccCCCcccCcCcc
Confidence 9997 8899999999999999998653
No 51
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.6e-53 Score=413.42 Aligned_cols=241 Identities=21% Similarity=0.307 Sum_probs=213.8
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
++..|++.+... +..-+ ......+.+.||..|.++++++ .||+++||.++|+++||+++|+|++|+|||+|+.+|
T Consensus 104 ~d~~G~plD~~~-~~~~~--~~~~i~~~~p~p~~R~~i~~~l--~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I 178 (438)
T PRK07721 104 LDALGEPLDGSA-LPKGL--APVSTDQDPPNPLKRPPIREPM--EVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMI 178 (438)
T ss_pred ECcCCCccCCCC-CCCcc--ccCCccCCCCChhhccCccccc--ccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHH
Confidence 356788887654 22211 1223566788899999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHh-hhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQD-FEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~-l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
+++.. .+..++.++|||.+++.++.++ +...+ ++++++|++++|+|+.+|++++|+|+++|||
T Consensus 179 ~~~~~---------------~~~gvI~~~Gerg~ev~e~~~~~l~~~~-l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEy 242 (438)
T PRK07721 179 ARNTS---------------ADLNVIALIGERGREVREFIERDLGPEG-LKRSIVVVATSDQPALMRIKGAYTATAIAEY 242 (438)
T ss_pred hcccC---------------CCeEEEEEEecCCccHHHHHHhhcChhh-hcCeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 88762 3567889999999888776655 55444 8899999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVS 240 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dp 240 (293)
||++ |+|||+++||+||||+|+||||+++||||+++|||+++|+.+++++||+++. ++||||+|+||+++++|++||
T Consensus 243 fr~~-g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~--~~GsIT~~~TVlv~~hdm~e~ 319 (438)
T PRK07721 243 FRDQ-GLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTN--ASGSITAFYTVLVDGDDMNEP 319 (438)
T ss_pred HHHC-CCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCC--CCCCeeeEEEEEEECCCCCch
Confidence 9998 9999999999999999999999999999999999999999999999999973 479999999999999999999
Q ss_pred cccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 241 AARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 241 i~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
++|+ .++.+++|||||+..|.||...
T Consensus 320 i~d~v~~i~dG~Ivls~~la~~g~~PAIdv~~S~SR~~~ 358 (438)
T PRK07721 320 IADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMN 358 (438)
T ss_pred hhhhEEEecCEEEEEeccHHHCCCCCccCCccccccccc
Confidence 9996 8899999999999999999753
No 52
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=2.5e-53 Score=405.73 Aligned_cols=251 Identities=52% Similarity=0.816 Sum_probs=232.6
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
|+=.|++++.-+.+..=++ ...+|.+.||..|.+|+++| +|||++||.|+++.||||++||+++|.+++.|+++|
T Consensus 92 fnG~G~PiDggp~i~~e~~---~dI~g~~~NP~aR~yP~efI--qTgIsaIDg~NtLvrgQKlPIFSgSGlphN~LaaqI 166 (463)
T COG1156 92 FNGSGKPIDGGPEIVPEDR---LDINGAPINPYARIYPEEFI--QTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQI 166 (463)
T ss_pred hcCCCCcCCCCCcCCCCcc---cccCCCCCCchhhhChhhHh--hcCccHHhhhhhhhcccccccccCCCCchHHHHHHH
Confidence 4556888888777764333 33679999999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
++|+.. ... .+++.+||+++|-..+++.||.+++.+.|+++|+++|.+.+|+|+++|..+|.+|++.||||
T Consensus 167 arQA~v--------~~~-~e~favVfaamGit~eea~fF~~~fe~tGal~r~vlflnlA~dp~vEri~tPr~aLt~AEyl 237 (463)
T COG1156 167 ARQATV--------DGE-EEEFAVVFAAMGITHEEALFFMDEFEETGALDRAVLFLNLADDPAVERIITPRMALTVAEYL 237 (463)
T ss_pred HHhccc--------CCC-ccceeEEEeecCccHHHHHHHHHHHHhhhhhhhhHhhhhccCCCceeEecchhHHHHHHHHH
Confidence 999953 222 26789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
+.++++|||+|+.|||+||+|+||||.+.+|.|+|+||||+||++|+.+|||||++++++||||.+|++++|+||+||||
T Consensus 238 A~e~~~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~g~~GSiTqipIlTMP~DDITHPI 317 (463)
T COG1156 238 AFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGRKGSITQIPILTMPGDDITHPI 317 (463)
T ss_pred hccCCceEEEEEcchhHHHHHHHHHHhhhccCCCcCCCcchHHHHHHHHHHhhceeccCCCceEEEEeeecCCCCcCCCC
Confidence 99989999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
||. ++..+++||-++...|-|+-..
T Consensus 318 PDlTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~ 355 (463)
T COG1156 318 PDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMK 355 (463)
T ss_pred CcccceeccceEEEEhhcccCCcCCCccccccHHHHhh
Confidence 995 6788999999999999888765
No 53
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=1.3e-52 Score=443.37 Aligned_cols=165 Identities=30% Similarity=0.491 Sum_probs=156.5
Q ss_pred CceEEEEEecCccchhHHHHHHhhhh-------CCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEe
Q psy5595 101 DNFAIVFAAMGVNMETARFFKQDFEE-------NGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVIL 173 (293)
Q Consensus 101 ~~~~~V~~~iGer~e~~~~~~~~l~~-------~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~ 173 (293)
+.++|||++||||.+|+.++.+++.+ .++|+||++|+||+|+|+++|++++|+|+|+||||||+ |+|||+++
T Consensus 681 ~adi~V~~~iGERg~Ev~e~l~~~~~l~~~~~g~~~m~rtvlv~~ts~~p~~~R~~s~y~a~tiAEyfrd~-G~~Vll~~ 759 (1017)
T PRK14698 681 DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMA 759 (1017)
T ss_pred CCCEEEEEeeccchHHHHHHHHHHHhhcccccCccccccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEe
Confidence 56899999999999999999988844 78899999999999999999999999999999999998 99999999
Q ss_pred cchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccC-----CCCcceeeeeEEEecCCCcccccccc----
Q psy5595 174 TDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIPILTMPNDDFKVSAARE---- 244 (293)
Q Consensus 174 Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~-----~~~GSiT~i~~v~~~~~d~~dpi~~~---- 244 (293)
||+||||+|+||||+++||||+++|||+|+|+.|++||||||++. +++||||++++|++|+||++|||+++
T Consensus 760 Ds~sR~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ERaG~~~~l~~~~~~GSIT~i~~V~~~g~D~s~Pv~~~~~~i 839 (1017)
T PRK14698 760 DSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRV 839 (1017)
T ss_pred ccchHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhccCCcccCCCCCCcceEEEEEEECCCCCCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999963 25799999999999999999999996
Q ss_pred ---------ccCCCCCCCCcccccccchhhh
Q psy5595 245 ---------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 245 ---------~la~~r~~Pai~~~~~~s~~~r 266 (293)
+|+.+++|||||+..|.|+|..
T Consensus 840 ~dg~i~L~~~La~~g~~PAId~l~S~Sr~~~ 870 (1017)
T PRK14698 840 VKVFWALDADLARRRHFPAINWLTSYSLYVD 870 (1017)
T ss_pred hCcEEecCHHHHhCCCCCCcCcccchhhhcc
Confidence 8899999999999999999964
No 54
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=3.2e-52 Score=400.52 Aligned_cols=219 Identities=17% Similarity=0.212 Sum_probs=200.5
Q ss_pred ecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceE
Q psy5595 25 EKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFA 104 (293)
Q Consensus 25 ~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~ 104 (293)
+.+..+.||..|...+... ..+|+|+||+|+|||||||++|+|++|+|||+|+.+|+++..+. + ++..
T Consensus 98 ~~~~~pi~p~~R~~ie~~~-~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~---------~--~dv~ 165 (380)
T PRK12608 98 FDDLTPLHPRERLRLETGS-DDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN---------H--PEVH 165 (380)
T ss_pred cCcCCCCCccccccccccC-cchhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc---------C--CCce
Confidence 5777888999998888663 36899999999999999999999999999999999999987531 1 2456
Q ss_pred EEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHHH
Q psy5595 105 IVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALR 184 (293)
Q Consensus 105 ~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~r 184 (293)
|++++||||.+++++|++.+.. +++++++|+|+..|.++.++++++||||+++ |+||+|++||+||||+|||
T Consensus 166 ~vv~lIgER~~EV~df~~~i~~-------~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~-GkdVVLvlDsltr~A~A~r 237 (380)
T PRK12608 166 LMVLLIDERPEEVTDMRRSVKG-------EVYASTFDRPPDEHIRVAELVLERAKRLVEQ-GKDVVILLDSLTRLARAYN 237 (380)
T ss_pred EEEEEecCCCCCHHHHHHHHhh-------hEEeecCCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeCcHHHHHHHH
Confidence 8999999999999999998843 7889999999999999999999999999998 9999999999999999999
Q ss_pred HHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEec-CCCcccccccc-------------ccCCCC
Q psy5595 185 EVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMP-NDDFKVSAARE-------------EVPGRR 250 (293)
Q Consensus 185 eisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~-~~d~~dpi~~~-------------~la~~r 250 (293)
|+++++||+|+ +|||+++|+.+++|+||||+++ ++||||+|+||+++ +++++|||+|+ +||+++
T Consensus 238 ei~~~~G~~~s-~G~~~s~~~~~~rl~~~A~~~~-~~GSiT~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~~ 315 (380)
T PRK12608 238 NEVESSGRTLS-GGVDARALQRPKRLFGAARNIE-EGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKR 315 (380)
T ss_pred hhhcccCCCCC-CCcChHHHhhhHHHHHhcCCCC-CCcchhheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhCC
Confidence 99999999999 8999999999999999999985 59999999999999 66699999997 899999
Q ss_pred CCCCcccccccchhh
Q psy5595 251 GFPGYMYTNLATIYE 265 (293)
Q Consensus 251 ~~Pai~~~~~~s~~~ 265 (293)
+|||||+.+|+||-+
T Consensus 316 ~fPAIDi~~S~sR~~ 330 (380)
T PRK12608 316 VFPAIDIAKSGTRRE 330 (380)
T ss_pred CCCccCcccccCcch
Confidence 999999999999954
No 55
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=6e-51 Score=399.86 Aligned_cols=242 Identities=25% Similarity=0.368 Sum_probs=213.2
Q ss_pred cccCCCCCC--CCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHH
Q psy5595 3 AVVGEEALT--PDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQ 80 (293)
Q Consensus 3 ~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~ 80 (293)
+..|++.+. ...+...+ ......+.+.||..|.++++++ .||+|+||.++||++|||++|||++|+|||+|+.+
T Consensus 108 d~~G~pld~~~~~~~~~~~--~~~~i~~~~~~~~~R~~~~e~l--~TGi~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~ 183 (442)
T PRK06315 108 NGLGEPIDTETKGPLENVD--ETYPIFRAPPDPLHRAKLRTIL--STGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGM 183 (442)
T ss_pred eccCcccccccCCCccccc--ceeeeecCCCChHHcccccccc--cceEEEEeccccccCCcEEEEECCCCCCcchHHHH
Confidence 456888776 43433221 1122456788899999999999 99999999999999999999999999999999999
Q ss_pred HHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHH-HhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHH
Q psy5595 81 ICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFK-QDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE 159 (293)
Q Consensus 81 I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~-~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAE 159 (293)
|+++... .+..|+++||||.+++.++. +.+.+.+ ++++++|++|++++|..++..+++++++||
T Consensus 184 I~~~~~~--------------~~~~vi~liGerg~ev~~~~~~~l~~~g-~~~svvvvats~q~p~~rlnp~~va~~IAE 248 (442)
T PRK06315 184 IARNAEE--------------ADVNVIALIGERGREVREFIEGDLGEEG-MKRSVIVVSTSDQSSQLRLNAAYVGTAIAE 248 (442)
T ss_pred hhccccc--------------CCceEEEEECCCchHHHHHHHHHHHhcC-CceEEEEEeCCCCCHHHHhhHHHHHHHHHH
Confidence 9987621 23468899999998886554 4466655 889999999999999999999999999999
Q ss_pred HHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccc
Q psy5595 160 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKV 239 (293)
Q Consensus 160 yfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~d 239 (293)
|||++ |++||+++|++|||++|+|||++++|+||++++|||++|+.|++||||||+. ++||||+||||++++||++|
T Consensus 249 ~~r~~-g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~l~~llERag~~--~~GSITai~tVl~~gdD~~d 325 (442)
T PRK06315 249 YFRDQ-GKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGAS--DKGTITAFYTVLVAGDDMNE 325 (442)
T ss_pred HHHHc-CCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhHhHHHHHHhcCC--CCcceeeeEEEEecCCCCCc
Confidence 99998 9999999999999999999999999999999999999999999999999985 58999999999999999999
Q ss_pred ccccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 240 SAARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 240 pi~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
||+|+ +++.+++|||||+..|.||...
T Consensus 326 pi~d~~~~i~dg~ivLsr~la~~g~~Paidv~~S~SR~~~ 365 (442)
T PRK06315 326 PVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLT 365 (442)
T ss_pred ccHHHhhhhcceEEEEeccHHHcCCCCCccchhhhcccch
Confidence 99997 8899999999999999998763
No 56
>KOG1350|consensus
Probab=100.00 E-value=1.2e-51 Score=385.46 Aligned_cols=246 Identities=20% Similarity=0.301 Sum_probs=219.8
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.||+||+++.--.+--.-|...+.+. |- -.+-..-.|++ +||||++|+|.|..||.|+++||++|+|||.|++++
T Consensus 137 ~NViGePiDerGpi~s~~~~~IHaea--P~-f~e~s~~~eIl--~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlImEL 211 (521)
T KOG1350|consen 137 MNVIGEPIDERGPIKSKKYSPIHAEA--PE-FVEMSVEQEIL--VTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 211 (521)
T ss_pred HHhcCCcccccCCcccccccccccCC--hh-HhhhcccHHHH--hhcceeeeeecccccCCeeeeeccCCccceeeHHHH
Confidence 58999999877766544444443221 11 02223345677 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCcc------ccEEEEeeCCCCchhhhhchHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSM------ENVCLFLNLANDPTIERIITPRLAL 155 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~------~~tvvv~stsd~~~~~r~~a~~~a~ 155 (293)
+|+.+|+ ++.++||+++|||.+|.+++++++.+.|++ +|..+|+.++++||+.|.+++.+++
T Consensus 212 INNiAKa------------HGGySVF~GvGERTREGNDLY~EM~E~gVI~l~~~~SKvaLV~GQMNePPGARaRV~LTgL 279 (521)
T KOG1350|consen 212 INNIAKA------------HGGYSVFAGVGERTREGNDLYHEMIESGVINLEGETSKVALVYGQMNEPPGARARVALTGL 279 (521)
T ss_pred HHHHHHh------------cCCeEEeeccccccccccHHHHHHHhcCeeeccCCcceEEEEeeccCCCCCceeeeeeecc
Confidence 9999885 578999999999999999999999999886 6888999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCC
Q psy5595 156 TTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPND 235 (293)
Q Consensus 156 tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~ 235 (293)
++||||||++|+|||+++|+++||.+|.+|+|.++||+|+..||+|.+-+++..+.||.... ++||||++++|++|+|
T Consensus 280 TvAEYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERITtT--kkGSiTSvQAvYVPAD 357 (521)
T KOG1350|consen 280 TVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAVYVPAD 357 (521)
T ss_pred cHHHHhhccccceEEEeehhhhhhhccchHHHHHhccCccccccCcccccchhhhhHhhhcc--ccCceeEEEEEEeehh
Confidence 99999999999999999999999999999999999999999999999999999999999884 6899999999999999
Q ss_pred Ccccccccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 236 DFKVSAARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 236 d~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
|++||.|.. .|++..+|||+|+.+|.|+.++
T Consensus 358 DLtDPaPattFaHLDAttVLSR~iaelgIYPAVDPLDStSrimd 401 (521)
T KOG1350|consen 358 DLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMD 401 (521)
T ss_pred ccCCCCccceeeccchhhhhhhhhHhcCCccccCCccccccccC
Confidence 999999985 6778889999999999999765
No 57
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=3.1e-47 Score=368.53 Aligned_cols=218 Identities=16% Similarity=0.229 Sum_probs=191.4
Q ss_pred cccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEE
Q psy5595 26 KNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAI 105 (293)
Q Consensus 26 ~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~ 105 (293)
++-.+..|..|...+.- .+..|+|+||+++|||+|||++|+|++|+|||+|+.+|++.... | ..+..|
T Consensus 134 e~LTf~YP~er~~Le~~-~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~---------n--hfdv~v 201 (415)
T TIGR00767 134 ENLTPLYPNERLRLETS-TEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR---------N--HPEVEL 201 (415)
T ss_pred EEeeecCCCccceeecC-ccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc---------c--CCceEE
Confidence 34444445555333210 12578999999999999999999999999999999999998743 1 134578
Q ss_pred EEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHHHH
Q psy5595 106 VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALRE 185 (293)
Q Consensus 106 V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~re 185 (293)
++++||||++++.++.+.+. ..+|++++|+|+..|..+++.+++.||||+++ |+||+|++||++|||+|+||
T Consensus 202 ~VlLIgER~~EVtDLqrsIl-------g~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~-GkdVVLlIDEitR~arAqre 273 (415)
T TIGR00767 202 IVLLIDERPEEVTDMQRSVK-------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEH-KKDVVILLDSITRLARAYNT 273 (415)
T ss_pred EEEEcCCCCccHHHHHHHhh-------ceEEEecCCCChHHHHHHHHHHHHHHHHHHHc-CCCeEEEEEChhHHHHHHHH
Confidence 99999999999999999873 48999999999999999999999999999988 99999999999999999999
Q ss_pred HhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEec-CCCcccccccc-------------ccCCCCC
Q psy5595 186 VSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMP-NDDFKVSAARE-------------EVPGRRG 251 (293)
Q Consensus 186 isl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~-~~d~~dpi~~~-------------~la~~r~ 251 (293)
+++++||||+ +|||+++|+.+++|+|||++++ ++||||+|+||+++ +++|+|||+++ +||++++
T Consensus 274 i~~~~G~~~s-~G~~~~~~~~~~~~~~~a~~~~-~~GSiT~~~TvLvetg~~mdd~i~~e~kg~~~~~ivL~r~la~~~~ 351 (415)
T TIGR00767 274 VTPASGKVLS-GGVDANALHRPKRFFGAARNIE-EGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRI 351 (415)
T ss_pred hHhhcCCCCC-CCcChhhhcccHHHHhhcCCCC-CCcchhheEEEEeccCCCCCcchHHHhccccCCeEEECHHHHhCCC
Confidence 9999999999 9999999999999999999986 59999999999999 55589999996 8899999
Q ss_pred CCCcccccccchhh
Q psy5595 252 FPGYMYTNLATIYE 265 (293)
Q Consensus 252 ~Pai~~~~~~s~~~ 265 (293)
|||||+.+|+||-+
T Consensus 352 fPAidi~~S~sR~~ 365 (415)
T TIGR00767 352 FPAIDIKKSGTRKE 365 (415)
T ss_pred CCCcCcccccccch
Confidence 99999999999854
No 58
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=3.9e-48 Score=378.97 Aligned_cols=237 Identities=26% Similarity=0.360 Sum_probs=217.4
Q ss_pred CCCceeEEEecceeecccccCCCccccCCC---------CccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 11 TPDDLLYLEFLTKFEKNFVSQEGERSFTPR---------DLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 11 ~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~---------e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+|.+.++|.+++..+..|.| -||.+.|+ +|| .||.|+||+|+|+.||....|.||+|+|||.+.+++
T Consensus 168 v~d~ia~v~~~~g~~~~~m~~-~WPVR~~rp~~eKl~p~~Pl--~TGqRviDt~FPvaKGGTaaiPGpFGsGKTV~qh~l 244 (588)
T COG1155 168 VEDVIATVSTEGGEVDVQMMT-TWPVRKARPVKRKLPPEIPL--VTGQRVIDTLFPVAKGGTAAVPGPFGSGKTVSQHTL 244 (588)
T ss_pred eeEEEEEEecCCCeEEEEEEE-eccccCCccccccCCCCCcc--cccceeehhhcccccCccccccCCCCCCcEehhhhh
Confidence 468899999988866667887 58876665 467 899999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhh-------hCCccccEEEEeeCCCCchhhhhchHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFE-------ENGSMENVCLFLNLANDPTIERIITPRLA 154 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~-------~~g~~~~tvvv~stsd~~~~~r~~a~~~a 154 (293)
++++. .+++||++||||..|.+++..++. ...+|+||++++||+++|...|+.+.|+|
T Consensus 245 aK~sd---------------adiVVyigCGERGNEmtevL~eFPeL~Dp~tg~~lm~RT~liaNTSnMPVAAREasIYtG 309 (588)
T COG1155 245 SKLAD---------------GDIVIYVGCGERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYTG 309 (588)
T ss_pred hhhcc---------------CCEEEEEecCCccchHHHHHHhCccccCCCCCCcccceeeEeecCccchHHHhhhhhhhh
Confidence 99984 689999999999988888877664 35568999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCC-----CCcceeeeeE
Q psy5595 155 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG-----RNGSITQIPI 229 (293)
Q Consensus 155 ~tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~-----~~GSiT~i~~ 229 (293)
.|+||||||+ |+||+++.||.+|||+|+||+|..++|+|+.+|||.+|-+.++++|||||++.. +-||+|++++
T Consensus 310 iTiaEY~RDm-Gy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~ga 388 (588)
T COG1155 310 ITIAEYYRDM-GYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGA 388 (588)
T ss_pred hhHHHHHHhh-hhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHhcCeeeecCCCcceEEEEEecC
Confidence 9999999999 999999999999999999999999999999999999999999999999999853 4599999999
Q ss_pred EEecCCCcccccccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 230 LTMPNDDFKVSAARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 230 v~~~~~d~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
|..++||+++|+..+ .+|.+||||+++|+.+.|.|..
T Consensus 389 VSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~ 438 (588)
T COG1155 389 VSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTE 438 (588)
T ss_pred CCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHHHHHHH
Confidence 999999999999985 8899999999999999999864
No 59
>KOG1352|consensus
Probab=100.00 E-value=5.5e-48 Score=367.95 Aligned_cols=238 Identities=27% Similarity=0.392 Sum_probs=218.8
Q ss_pred CCCceeEEEecceeecccccCCCccccCCCC---------ccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 11 TPDDLLYLEFLTKFEKNFVSQEGERSFTPRD---------LIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 11 ~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e---------~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+|.++|+||.+++.+..|-| -|+.+.|++ || .||.|++|+|+||..|....|.|..|||||.+-+.+
T Consensus 189 ~~d~vlE~Ef~g~k~~~tmlq-~WPVR~pRPv~ekl~an~PL--ltGQRvLDalfPcVqGGTtaIPGAFGCGKTVISQsL 265 (618)
T KOG1352|consen 189 LDDVVLELEFDGEKTKFTMLQ-TWPVRQPRPVTEKLPANHPL--LTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSL 265 (618)
T ss_pred cccEEEEEeecCceeeEEEEE-ecccCCCcchhhccCCCCcc--cccchHHHhhcchhcCCccccCcccccchHHHHHHH
Confidence 478899999999999999988 699999986 45 799999999999999999999999999999998887
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhh---------hCCccccEEEEeeCCCCchhhhhchHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFE---------ENGSMENVCLFLNLANDPTIERIITPR 152 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~---------~~g~~~~tvvv~stsd~~~~~r~~a~~ 152 (293)
.... ..+.+||++||||..|..++..++. ...+|+||.+|+||+++|...|.++.|
T Consensus 266 SKYS---------------NSD~iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPVAAREASIY 330 (618)
T KOG1352|consen 266 SKYS---------------NSDAIIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPVAAREASIY 330 (618)
T ss_pred hhcc---------------CCCeEEEEcccccchhHHHHHHhChhhEEecCCcchhhhhhhhhhhcCCCCchhhhhhhhh
Confidence 7655 3589999999999877776665554 345689999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccC-----CCCcceeee
Q psy5595 153 LALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQI 227 (293)
Q Consensus 153 ~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~-----~~~GSiT~i 227 (293)
++++++|||||+ |+||-.+.||.+|||+|+||||..+.|+|.-.|||.++-..|+++|||||+++ ++.||+|++
T Consensus 331 TGITlsEYfRDm-G~nVsMmADStSRWAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vkcLGsP~ReGsVsIV 409 (618)
T KOG1352|consen 331 TGITLSEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPDREGSVSIV 409 (618)
T ss_pred hcccHHHHHHhc-CcceeeeecchhHHHHHHHHhhhhhhcCcCcCCCcHHHHHHHHHHHHhcCceeecCCCCcCceeEEE
Confidence 999999999999 99999999999999999999999999999999999999999999999999985 479999999
Q ss_pred eEEEecCCCcccccccc-------------ccCCCCCCCCcccccccchhhhc
Q psy5595 228 PILTMPNDDFKVSAARE-------------EVPGRRGFPGYMYTNLATIYERA 267 (293)
Q Consensus 228 ~~v~~~~~d~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~~r~ 267 (293)
.+|..|+||++||+... +||+++|||.++|+-|.|.|.|+
T Consensus 410 gAVSPpGGDFsDPVTsATLgIvQVFWGLDKKLAQRKHFPSiNwliSYSkY~~a 462 (618)
T KOG1352|consen 410 GAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRA 462 (618)
T ss_pred EeecCCCCCcCCcchhhhhheeeehhcccHHHHhhccCCccchhhhHHHHHHH
Confidence 99999999999999874 89999999999999999999873
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=8.3e-43 Score=320.61 Aligned_cols=196 Identities=16% Similarity=0.222 Sum_probs=177.5
Q ss_pred CceeeeecccccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhC
Q psy5595 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEEN 127 (293)
Q Consensus 48 GiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~ 127 (293)
..|+||+|+||++|||++|||++|+|||+|+.+|+++... ...+.+++++++|+|+.++.++.+.+
T Consensus 3 ~~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~-----------~~fdv~~~v~vI~er~~ev~el~~~I--- 68 (249)
T cd01128 3 STRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITK-----------NHPEVYLIVLLIDERPEEVTDMQRSV--- 68 (249)
T ss_pred chhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhcccc-----------ccCCeEEEEEEccCCCccHHHHHHHh---
Confidence 3699999999999999999999999999999999998742 11134667778999999999998887
Q ss_pred CccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhH
Q psy5595 128 GSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNL 207 (293)
Q Consensus 128 g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~l 207 (293)
++++|++++|+|+..|+++++.+++.||||+++ |++|++++|+++||++|+||++...|++| ..|||+++|+.+
T Consensus 69 ----~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~-G~~vll~iDei~r~a~a~~ev~~~~G~~~-sgG~~~~~~~~~ 142 (249)
T cd01128 69 ----KGEVIASTFDEPPERHVQVAEMVLEKAKRLVEH-GKDVVILLDSITRLARAYNTVVPPSGKIL-SGGVDANALHKP 142 (249)
T ss_pred ----ccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECHHHhhhhhhhccccCCCCC-CCCcChhhhhhh
Confidence 679999999999999999999999999999987 99999999999999999999999999999 689999999999
Q ss_pred HHHhhhhcccCCCCcceeeeeEEEecC-CCcccccccc-------------ccCCCCCCCCcccccccchh
Q psy5595 208 ATIYERAGRVEGRNGSITQIPILTMPN-DDFKVSAARE-------------EVPGRRGFPGYMYTNLATIY 264 (293)
Q Consensus 208 a~l~ERag~~~~~~GSiT~i~~v~~~~-~d~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~ 264 (293)
++++||||.+. ++||||+++|+++++ ++++||+.++ +++..++||+|++.+++++-
T Consensus 143 ~q~~~~Ar~~~-~~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~ 212 (249)
T cd01128 143 KRFFGAARNIE-EGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRK 212 (249)
T ss_pred HHHHHHhcCCC-CCCceEEeeeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCcc
Confidence 99999999975 599999999999995 5577797664 78899999999999999984
No 61
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=1.5e-42 Score=325.69 Aligned_cols=218 Identities=17% Similarity=0.234 Sum_probs=191.2
Q ss_pred cccccCCCccccCCCCccc--cCCCceeeeecccccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCce
Q psy5595 26 KNFVSQEGERSFTPRDLIG--DSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNF 103 (293)
Q Consensus 26 ~~~~~~~p~~r~~p~e~l~--~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~ 103 (293)
++..|..|..|...+.... +.| -|+||++.|||||||.+|++||.+|||+|++.||+...+ || +..
T Consensus 137 ~~LTPlyP~erl~LE~~~~~~~ls-~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~---------N~--Pe~ 204 (422)
T COG1158 137 ENLTPLYPNERLKLERENGSTDLS-TRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITT---------NH--PEC 204 (422)
T ss_pred ccCCCCCCcceeeeecCCCcccch-hHHHhhhcccCCCceeeEecCCCCCchHHHHHHHHHHhc---------CC--Cce
Confidence 4445555555554442110 123 499999999999999999999999999999999999865 44 467
Q ss_pred EEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHH
Q psy5595 104 AIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEAL 183 (293)
Q Consensus 104 ~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~ 183 (293)
+.++++|+||+||++++++.+ +..||+||+|+||..|.+++++.+..|.++.++ ||||++++||+||+|+||
T Consensus 205 ~LiVLLIDERPEEVTdmqrsV-------~geViaSTFDepp~~HvqVAE~viEkAKRlVE~-~kDVVILLDSITRLaRAY 276 (422)
T COG1158 205 ELIVLLIDERPEEVTDMQRSV-------KGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEH-GKDVVILLDSITRLARAY 276 (422)
T ss_pred EEEEEEecCCchHHHHHHHhh-------cceEEeecCCCcchhhHHHHHHHHHHHHHHHHc-CCcEEEEehhHHHHHHHh
Confidence 889999999999999999988 458999999999999999999999999999999 999999999999999999
Q ss_pred HHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCC-cccccccc-------------ccCCC
Q psy5595 184 REVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDD-FKVSAARE-------------EVPGR 249 (293)
Q Consensus 184 reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d-~~dpi~~~-------------~la~~ 249 (293)
|-+....|+..+ .|--+..++...+++..|++++ +|||+|+++|+++++|+ |+|.|++| .|+++
T Consensus 277 N~v~P~SGkvLs-GGvD~nAL~~PKrFFGAARNIE-eGGSLTIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laer 354 (422)
T COG1158 277 NTVVPSSGKVLS-GGVDANALHRPKRFFGAARNIE-EGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAER 354 (422)
T ss_pred cccCCCCCCeec-CCcChhhhcCchhhhhhhhccc-cCcchhhhhhhhhhcCCccchhhhhhhcCCCceEEEEhhhhhhc
Confidence 999999999887 4666777888899999999997 59999999999999999 88999986 89999
Q ss_pred CCCCCcccccccchhh
Q psy5595 250 RGFPGYMYTNLATIYE 265 (293)
Q Consensus 250 r~~Pai~~~~~~s~~~ 265 (293)
|+|||||..+|++|-|
T Consensus 355 RifPAIdi~kSGTRKE 370 (422)
T COG1158 355 RIFPAIDINKSGTRKE 370 (422)
T ss_pred ccccceecccCCcchH
Confidence 9999999999999964
No 62
>KOG1353|consensus
Probab=99.77 E-value=1.2e-19 Score=166.05 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=122.5
Q ss_pred CccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCC--------CCceE
Q psy5595 33 GERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDS--------EDNFA 104 (293)
Q Consensus 33 p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~--------~~~~~ 104 (293)
..+|....||+ +||+|++|+++|||||||.+|+|+.-+|||.| +.+|++||+ .++.+
T Consensus 121 ii~r~Sv~epm--qtg~KAvdslVpigRgqrELiIgdRqTGkTsl-------------a~dTI~nqk~~N~~~~ekkKiy 185 (340)
T KOG1353|consen 121 IIPRASVDEPM--QTGLKAVDSLVPIGRGQRELIIGDRQTGKTSL-------------AIDTILNQKRGNECLDEKKKIY 185 (340)
T ss_pred cccceeeechh--hhhhhHhhceeeeccCceEEEeccccCCceee-------------eehhhhhhhhhcccccccceEE
Confidence 36778888899 99999999999999999999999966666554 455555554 24579
Q ss_pred EEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHHH
Q psy5595 105 IVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALR 184 (293)
Q Consensus 105 ~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~r 184 (293)
|||++||++++.+..+.+.|.++++|+|+++|++|++
T Consensus 186 CvyvaigqkrStvaqlv~~l~~~~a~~y~ivv~atas------------------------------------------- 222 (340)
T KOG1353|consen 186 CVYVAIGQKRSTVAQLVQRLEEADAMEYSIVVAATAS------------------------------------------- 222 (340)
T ss_pred EEEEecccchhHHHHHHHHHHhcCCceEEEEEEeecc-------------------------------------------
Confidence 9999999999999999999999999999999999988
Q ss_pred HHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccccccccCCCCCCCCcccccccchh
Q psy5595 185 EVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSAAREEVPGRRGFPGYMYTNLATIY 264 (293)
Q Consensus 185 eisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~~~~la~~r~~Pai~~~~~~s~~ 264 (293)
.++|++.+||.+.|+. +++ .++.+.++-..
T Consensus 223 ------------------------------------------------q~gdvsayiptnvisi-dgq-i~l~t~lfy~g 252 (340)
T KOG1353|consen 223 ------------------------------------------------QAGDVSAYIPTNVISI-DGQ-IFLETELFYKG 252 (340)
T ss_pred ------------------------------------------------cccceeeecccceeee-cch-hHHHHHHHHhc
Confidence 6778888888888777 544 66777776555
Q ss_pred hh----ccccccCCccccccceeecCCC
Q psy5595 265 ER----AGRVEGRNGSITQIPILTMPND 288 (293)
Q Consensus 265 ~r----~g~~~~~~Gs~~~~~~~~~~~~ 288 (293)
.| .|.+++|+||.+|..++....|
T Consensus 253 irpainvg~svsrvgsaaq~kamkqvag 280 (340)
T KOG1353|consen 253 IRPAINVGLSVSRVGSAAQTKAMKQVAG 280 (340)
T ss_pred cchhheeeeEeeeccchHHHHHHHHHhh
Confidence 55 6788999999999988765544
No 63
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.08 E-value=5.2e-09 Score=86.37 Aligned_cols=143 Identities=26% Similarity=0.420 Sum_probs=99.7
Q ss_pred eeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDP 143 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~ 143 (293)
++|+|++|+|||+++.+++.+..+ .+..++|....+......+....+...+..++..++....+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-------------~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-------------KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDP 68 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-------------cCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCC
Confidence 589999999999999999998853 2456778887776554433222333334445555555555554
Q ss_pred hhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcc
Q psy5595 144 TIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGS 223 (293)
Q Consensus 144 ~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GS 223 (293)
...... .++.++... .+..++|+|+++.+.+...+. ..+++..+...+.+|++++.+ ..
T Consensus 69 ~~~~~~------~~~~~~~~~-~~~~~lviDe~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~~~~-----~~ 127 (165)
T cd01120 69 AAARLL------SKAERLRER-GGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERARK-----GG 127 (165)
T ss_pred cHHHHH------HHHHHHHhC-CCCEEEEEEcHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHHhc-----CC
Confidence 333322 456667666 678899999999999876653 235677778888899888754 57
Q ss_pred eeeeeEEEecCCCcccc
Q psy5595 224 ITQIPILTMPNDDFKVS 240 (293)
Q Consensus 224 iT~i~~v~~~~~d~~dp 240 (293)
+|.+.+...+.++..++
T Consensus 128 ~~vv~~~~~~~~~~~~~ 144 (165)
T cd01120 128 VTVIFTLQVPSGDKGDP 144 (165)
T ss_pred ceEEEEEecCCccccCc
Confidence 89999999887765544
No 64
>KOG1351|consensus
Probab=98.76 E-value=2.7e-09 Score=100.56 Aligned_cols=63 Identities=73% Similarity=1.135 Sum_probs=52.2
Q ss_pred eEEEecCCCcccc-----ccccccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 228 PILTMPNDDFKVS-----AAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 228 ~~v~~~~~d~~dp-----i~~~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
-+++++..+..|- .+-|++|++|+||.|++++++++|||+|++..|.||+||+|.++||++|-
T Consensus 272 lviltdmssya~alrevsaareevpgrrg~pgymytdlatiyeragrvegr~gsitqipiltmpnddi 339 (489)
T KOG1351|consen 272 LVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDI 339 (489)
T ss_pred EEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhHHHHHHHhcccccCCCceeeeeeEecCCccc
Confidence 3455544443332 23369999999999999999999999999999999999999999999984
No 65
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=98.68 E-value=5.8e-09 Score=101.46 Aligned_cols=206 Identities=32% Similarity=0.435 Sum_probs=115.8
Q ss_pred eeeeecccccCCceeeEecCCCCChhHHHHHHHHHhcccccCC-cccc-CCCCCceEEEEEecCccc-hhHHHHHHhhhh
Q psy5595 50 RAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPG-KSVL-DDSEDNFAIVFAAMGVNM-ETARFFKQDFEE 126 (293)
Q Consensus 50 raID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~-~~~~-~~~~~~~~~V~~~iGer~-e~~~~~~~~l~~ 126 (293)
+-||..=.|-..++.-|.|.|.=+-..+.-.---|++...|.+ +|+. .|+ .-||-+-|+-. +-+..+.+.-.-
T Consensus 97 ~PiDggp~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQK----lPIFSgSGlphN~LaaqIarQA~v 172 (463)
T COG1156 97 KPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQK----LPIFSGSGLPHNELAAQIARQATV 172 (463)
T ss_pred CcCCCCCcCCCCcccccCCCCCCchhhhChhhHhhcCccHHhhhhhhhcccc----cccccCCCCchHHHHHHHHHhccc
Confidence 6677777777788888999888776666554444555544433 2222 222 45788888764 444444443221
Q ss_pred CCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhh
Q psy5595 127 NGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTN 206 (293)
Q Consensus 127 ~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~ 206 (293)
.+-.+.-.+|++.+-- -..-|.+|++. .. ...-+.++--=+ .+...|+..+=-.|.+--.
T Consensus 173 ~~~~e~favVfaamGi-----------t~eea~fF~~~-fe-------~tGal~r~vlfl-nlA~dp~vEri~tPr~aLt 232 (463)
T COG1156 173 DGEEEEFAVVFAAMGI-----------THEEALFFMDE-FE-------ETGALDRAVLFL-NLADDPAVERIITPRMALT 232 (463)
T ss_pred CCCccceeEEEeecCc-----------cHHHHHHHHHH-HH-------hhhhhhhhHhhh-hccCCCceeEecchhHHHH
Confidence 1111222333333222 01235556543 11 111111111111 1222333333333333222
Q ss_pred HHHHhhhhcccCCCCcceeeeeEEEecCCCccccc--------cccccCCCCCCCCcccccccchhhhccccccCCcccc
Q psy5595 207 LATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA--------AREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSIT 278 (293)
Q Consensus 207 la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi--------~~~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~ 278 (293)
.+.- -+ ++ ++ ..|++--.|||.+- +-+++|++|+||.|++++++++|||||+++.+-||+|
T Consensus 233 ~AEy---lA-~e--~~-----~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~g~~GSiT 301 (463)
T COG1156 233 VAEY---LA-FE--KD-----MHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGRKGSIT 301 (463)
T ss_pred HHHH---Hh-cc--CC-----ceEEEEEcchhHHHHHHHHHHhhhccCCCcCCCcchHHHHHHHHHHhhceeccCCCceE
Confidence 2211 11 22 22 24555556888763 3369999999999999999999999999999999999
Q ss_pred ccceeecCCCCC
Q psy5595 279 QIPILTMPNDVG 290 (293)
Q Consensus 279 ~~~~~~~~~~~~ 290 (293)
|+|+++||++|-
T Consensus 302 qipIlTMP~DDI 313 (463)
T COG1156 302 QIPILTMPGDDI 313 (463)
T ss_pred EEEeeecCCCCc
Confidence 999999999984
No 66
>PRK08181 transposase; Validated
Probab=98.31 E-value=7.3e-07 Score=83.37 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=26.4
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.+++++.|+|++|+|||+|+..|++++.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~ 131 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALI 131 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 34899999999999999999999999874
No 67
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.26 E-value=7.3e-06 Score=72.89 Aligned_cols=115 Identities=16% Similarity=0.185 Sum_probs=68.3
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccc-hhHHHHHH
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNM-ETARFFKQ 122 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~-e~~~~~~~ 122 (293)
.||+..+|-++. +.+|.=..|+|+||+|||+|+.+++.+..+ .+..++|+-..+.. +....+.+
T Consensus 2 ~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~-------------~g~~v~yi~~e~~~~~~~~~~~~ 68 (218)
T cd01394 2 PTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG-------------QGKKVAYIDTEGLSSERFRQIAG 68 (218)
T ss_pred CcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-------------cCCeEEEEECCCCCHHHHHHHHh
Confidence 699999999996 778999999999999999999999988753 23456666443222 22222222
Q ss_pred hhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHH
Q psy5595 123 DFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEAL 183 (293)
Q Consensus 123 ~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~ 183 (293)
... .....+ +++....+. .++. ..+...+.+... +.-++|+|+++.+.++.
T Consensus 69 ~~~-~~~~~~-~~~~~~~~~--~~~~----~~~~~~~~~~~~--~~~lvvIDsi~~l~~~~ 119 (218)
T cd01394 69 DRP-ERAASS-IIVFEPMDF--NEQG----RAIQETETFADE--KVDLVVVDSATALYRLE 119 (218)
T ss_pred HCh-HhhhcC-EEEEeCCCH--HHHH----HHHHHHHHHHhc--CCcEEEEechHHhhhHH
Confidence 110 111223 344443332 2221 112222233333 35689999999986543
No 68
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=98.23 E-value=4.4e-07 Score=90.79 Aligned_cols=46 Identities=48% Similarity=0.771 Sum_probs=42.8
Q ss_pred ccCCCCCCCCcccccccchhhhccccc-----cCCccccccceeecCCCCC
Q psy5595 245 EVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 245 ~la~~r~~Pai~~~~~~s~~~r~g~~~-----~~~Gs~~~~~~~~~~~~~~ 290 (293)
++|...+||||+.++++.||||+|+++ +|.||+|++++||||+||=
T Consensus 346 EmPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~gaVSPpGGdf 396 (588)
T COG1155 346 EMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAVSPPGGDF 396 (588)
T ss_pred cCCcccccchHHHHHHHHHHHhcCeeeecCCCcceEEEEEecCCCCCCCCc
Confidence 677778999999999999999999888 8899999999999999983
No 69
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.22 E-value=2.4e-06 Score=67.18 Aligned_cols=99 Identities=21% Similarity=0.200 Sum_probs=57.5
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeC
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNL 139 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~st 139 (293)
++++++|+||+|+|||+++..|+++..+. ...++++.+....+....... .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 55 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP-------------GGGVIYIDGEDILEEVLDQLL------------LIIVG 55 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC-------------CCCEEEECCEEccccCHHHHH------------hhhhh
Confidence 47899999999999999999999988531 112444444433222211111 00111
Q ss_pred CCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHHHHHhh
Q psy5595 140 ANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSA 188 (293)
Q Consensus 140 sd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl 188 (293)
.+.....+.......++.|++. +..++++|++.++.........
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~-----~~~viiiDei~~~~~~~~~~~~ 99 (148)
T smart00382 56 GKKASGSGELRLRLALALARKL-----KPDVLILDEITSLLDAEQEALL 99 (148)
T ss_pred ccCCCCCHHHHHHHHHHHHHhc-----CCCEEEEECCcccCCHHHHHHH
Confidence 1222233344444444444332 3589999999998877766544
No 70
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.21 E-value=2.5e-06 Score=79.03 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=66.5
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeC
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNL 139 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~st 139 (293)
+|-.+.+.|++|+|||+|+..|++.+.+ .| .+|+|+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~---------------------------------------~g---~sv~f~~~ 141 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK---------------------------------------AG---ISVLFITA 141 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH---------------------------------------cC---CeEEEEEH
Confidence 8999999999999999999999998842 12 44555555
Q ss_pred CCCchhhhhchHHHHHHHHHHHHH-hcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhh
Q psy5595 140 ANDPTIERIITPRLALTTAEFLAY-QCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERA 214 (293)
Q Consensus 140 sd~~~~~r~~a~~~a~tiAEyfr~-~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERa 214 (293)
.+. +.++..++-.-+..+.+-. . .+--|||+||+........+-+. +|..+.+.|||.
T Consensus 142 ~el--~~~Lk~~~~~~~~~~~l~~~l-~~~dlLIiDDlG~~~~~~~~~~~--------------~~q~I~~r~~~~ 200 (254)
T COG1484 142 PDL--LSKLKAAFDEGRLEEKLLREL-KKVDLLIIDDIGYEPFSQEEADL--------------LFQLISRRYESR 200 (254)
T ss_pred HHH--HHHHHHHHhcCchHHHHHHHh-hcCCEEEEecccCccCCHHHHHH--------------HHHHHHHHHhhc
Confidence 555 5555555544333333333 4 56668889999886666555554 788888888754
No 71
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=98.20 E-value=3.3e-05 Score=70.94 Aligned_cols=121 Identities=14% Similarity=0.147 Sum_probs=82.4
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHH-
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQ- 122 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~- 122 (293)
.|||.-+|-++- +-+|..++|.|+||+|||.++.+.+.+..+ .+.-|+|+...|.+++......
T Consensus 6 ~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~-------------~ge~vlyvs~~e~~~~l~~~~~~ 72 (260)
T COG0467 6 PTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAR-------------EGEPVLYVSTEESPEELLENARS 72 (260)
T ss_pred cCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHh-------------cCCcEEEEEecCCHHHHHHHHHH
Confidence 799999999999 889999999999999999999999988764 2457999999999877755443
Q ss_pred ------hhhhCCccccEEEEeeCCCCchh---h--hhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHH
Q psy5595 123 ------DFEENGSMENVCLFLNLANDPTI---E--RIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEAL 183 (293)
Q Consensus 123 ------~l~~~g~~~~tvvv~stsd~~~~---~--r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~ 183 (293)
.+.+.+.+ .++-..+...+.. . -.......-.+-+...+. + ...+++||++.+....
T Consensus 73 ~g~d~~~~~~~g~l--~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~-~-~~~~ViDsi~~~~~~~ 140 (260)
T COG0467 73 FGWDLEVYIEKGKL--AILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKE-G-ADRVVIDSITELTLYL 140 (260)
T ss_pred cCCCHHHHhhcCCE--EEEEccccccccccccccCCccHHHHHHHHHHHHHHh-C-CCEEEEeCCchHhhhc
Confidence 23344421 1221222222111 1 122344555666777765 4 6788899999755444
No 72
>PRK09183 transposase/IS protein; Provisional
Probab=98.19 E-value=1.9e-06 Score=79.86 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=29.1
Q ss_pred eeeecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 51 AIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 51 aID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.++.+.-+.+|+.++|+||+|+|||+|+..|++.+
T Consensus 92 ~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 92 SLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred HHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 33333338899999999999999999999998876
No 73
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.17 E-value=1.6e-05 Score=71.27 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=87.0
Q ss_pred CCCceeeeecc--cccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCC-ceEEEEEecCccchhHHHHHH
Q psy5595 46 SSGKRAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSED-NFAIVFAAMGVNMETARFFKQ 122 (293)
Q Consensus 46 ~TGiraID~l~--pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~-~~~~V~~~iGer~e~~~~~~~ 122 (293)
.|||.-+|-++ -+-+|.-++|.|+||+|||+|+.+++.+..+ . +..|+|+..-+..+++..-.+
T Consensus 2 ~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~-------------~~ge~vlyvs~ee~~~~l~~~~~ 68 (226)
T PF06745_consen 2 PTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLK-------------NFGEKVLYVSFEEPPEELIENMK 68 (226)
T ss_dssp --SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-------------HHT--EEEEESSS-HHHHHHHHH
T ss_pred CCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhh-------------hcCCcEEEEEecCCHHHHHHHHH
Confidence 59999999999 7889999999999999999999998876643 2 357899998887654433222
Q ss_pred hh-------hhCCccccEEEEeeCCCCchh-hhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCC
Q psy5595 123 DF-------EENGSMENVCLFLNLANDPTI-ERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVP 194 (293)
Q Consensus 123 ~l-------~~~g~~~~tvvv~stsd~~~~-~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p 194 (293)
.+ .+.| +- .+......... .....-...-.+.+.+.+. + ...+++||++-+ ..+..
T Consensus 69 s~g~d~~~~~~~g---~l-~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~-~-~~~vVIDsls~l-~~~~~--------- 132 (226)
T PF06745_consen 69 SFGWDLEEYEDSG---KL-KIIDAFPERIGWSPNDLEELLSKIREAIEEL-K-PDRVVIDSLSAL-LLYDD--------- 132 (226)
T ss_dssp TTTS-HHHHHHTT---SE-EEEESSGGGST-TSCCHHHHHHHHHHHHHHH-T-SSEEEEETHHHH-TTSSS---------
T ss_pred HcCCcHHHHhhcC---CE-EEEecccccccccccCHHHHHHHHHHHHHhc-C-CCEEEEECHHHH-hhcCC---------
Confidence 22 2222 22 33333222110 0112233344556666665 3 378899999987 22111
Q ss_pred CCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecC
Q psy5595 195 GRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPN 234 (293)
Q Consensus 195 ~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~ 234 (293)
|..+...+-.++....+ .| +|.+.+..++.
T Consensus 133 -----~~~~r~~l~~l~~~l~~----~~-~t~llt~~~~~ 162 (226)
T PF06745_consen 133 -----PEELRRFLRALIKFLKS----RG-VTTLLTSEMPS 162 (226)
T ss_dssp -----GGGHHHHHHHHHHHHHH----TT-EEEEEEEEESS
T ss_pred -----HHHHHHHHHHHHHHHHH----CC-CEEEEEEcccc
Confidence 11123344555555543 23 46677777643
No 74
>KOG1352|consensus
Probab=98.16 E-value=5.5e-07 Score=87.76 Aligned_cols=46 Identities=39% Similarity=0.741 Sum_probs=42.8
Q ss_pred ccCCCCCCCCcccccccchhhhccccc-----cCCccccccceeecCCCCC
Q psy5595 245 EVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 245 ~la~~r~~Pai~~~~~~s~~~r~g~~~-----~~~Gs~~~~~~~~~~~~~~ 290 (293)
++|..-+||||+-+++++||||||+++ .|.|||++.++||||+||-
T Consensus 369 EMPADsGyPAYLgArLAsFYERAG~vkcLGsP~ReGsVsIVgAVSPpGGDF 419 (618)
T KOG1352|consen 369 EMPADSGYPAYLGARLASFYERAGRVKCLGSPDREGSVSIVGAVSPPGGDF 419 (618)
T ss_pred cCcCcCCCcHHHHHHHHHHHHhcCceeecCCCCcCceeEEEEeecCCCCCc
Confidence 566677999999999999999999998 9999999999999999984
No 75
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.16 E-value=1.1e-06 Score=77.13 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=24.3
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.+|+.+.|+|++|+|||+|+..|++.+.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~ 72 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAI 72 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999874
No 76
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=98.11 E-value=1.1e-06 Score=89.90 Aligned_cols=95 Identities=37% Similarity=0.528 Sum_probs=68.1
Q ss_pred EEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccccc-------
Q psy5595 171 VILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSAAR------- 243 (293)
Q Consensus 171 li~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~~------- 243 (293)
+++=+.+...-+.||.|. |..+ .+-|-=+ +.| .-|++-.||++-..-.
T Consensus 292 vlVanTSn~Pv~aR~~s~---------------ytgi-TiAEYfR---d~G------~~Vllm~DStSR~AeAlREIS~~ 346 (586)
T PRK04192 292 VLIANTSNMPVAAREASI---------------YTGI-TIAEYYR---DMG------YDVLLMADSTSRWAEALREISGR 346 (586)
T ss_pred EEEEECCCCCHHHHHHHH---------------HHHH-HHHHHHH---HCC------CCEEEEecChHHHHHHHHHHHHh
Confidence 344477777778888775 3222 1222111 223 2355557777654332
Q ss_pred -cccCCCCCCCCcccccccchhhhccccc---cCCccccccceeecCCCCC
Q psy5595 244 -EEVPGRRGFPGYMYTNLATIYERAGRVE---GRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 244 -~~la~~r~~Pai~~~~~~s~~~r~g~~~---~~~Gs~~~~~~~~~~~~~~ 290 (293)
+++|.+++||+|++++++++|||||++. ++.||+|++++|+||+||=
T Consensus 347 l~E~P~~eGYP~yL~S~La~~yERAG~v~~~~~~~GSIT~i~aVs~pggD~ 397 (586)
T PRK04192 347 LEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEEGSVTIIGAVSPPGGDF 397 (586)
T ss_pred cCCCCccCCcCccHHHHHHHHHHhhcccccCCCCCcceEEEEEEECCCCCC
Confidence 4999999999999999999999999997 4699999999999999984
No 77
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.03 E-value=2e-05 Score=75.59 Aligned_cols=111 Identities=18% Similarity=0.275 Sum_probs=74.2
Q ss_pred CCccccCCCceeeeeccc---ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchh
Q psy5595 40 RDLIGDSSGKRAIDVMNS---IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMET 116 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~p---igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~ 116 (293)
-+.+ .||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.++.+ .+..|+|+-.-+..+.
T Consensus 33 ~~~i--~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~-------------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 33 VETI--STGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK-------------AGGTAAFIDAEHALDP 97 (321)
T ss_pred Ccee--cCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-------------cCCcEEEEcccchhHH
Confidence 3456 899999999998 779999999999999999999999888754 2346777744333322
Q ss_pred HHHHHHhhhhCCc-cccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHH
Q psy5595 117 ARFFKQDFEENGS-MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAE 181 (293)
Q Consensus 117 ~~~~~~~l~~~g~-~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~ 181 (293)
. . +..-|+ +++ .+ +...+. .++ ++.+.+.+... +.-.+||+||++-+..
T Consensus 98 -~-~---a~~lGvd~~~-l~-v~~p~~--~eq------~l~~~~~li~~-~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 98 -V-Y---ARKLGVDIDN-LL-VSQPDT--GEQ------ALEIAETLVRS-GAVDIIVVDSVAALVP 147 (321)
T ss_pred -H-H---HHHcCCCHHH-eE-EecCCC--HHH------HHHHHHHHhhc-cCCcEEEEcchhhhcc
Confidence 1 1 122232 222 22 333332 333 35566666655 6778999999998764
No 78
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=98.01 E-value=2.1e-06 Score=83.12 Aligned_cols=61 Identities=39% Similarity=0.671 Sum_probs=51.5
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccc-----cCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~-----~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++-.||++-..-. +++|.+++||++..++++++|||+|++. .+.||+|++++|++|+||-
T Consensus 256 Vll~~Ds~tR~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~~~~~~~GSIT~i~~V~~~g~D~ 329 (369)
T cd01134 256 VALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIVGAVSPPGGDF 329 (369)
T ss_pred EEEEEcChhHHHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhcccccccCCCCCCccEEEEEEEEccCCCc
Confidence 44446777654332 4999999999999999999999999987 6789999999999999984
No 79
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.01 E-value=5.4e-05 Score=67.37 Aligned_cols=41 Identities=27% Similarity=0.443 Sum_probs=37.7
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.||+..+|-++- +-+|+-..|.|++|+|||+|+.+++.++.
T Consensus 2 ~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 2 STGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 699999999874 88999999999999999999999998874
No 80
>PRK06526 transposase; Provisional
Probab=97.99 E-value=5.2e-06 Score=76.95 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=25.7
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-+++++.|.||+|+|||+|+..|++++.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 4789999999999999999999999874
No 81
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.99 E-value=6.9e-05 Score=67.08 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=69.9
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCcc--chhHHHHH
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVN--METARFFK 121 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer--~e~~~~~~ 121 (293)
.||++.+|-++. +.+|....|.|++|+|||+|+.+++.+.... + . .......++|+...+. .+...++.
T Consensus 2 ~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~---~-~---~~g~~~~viyi~~e~~~~~~rl~~~~ 74 (235)
T cd01123 2 TTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLP---I-E---LGGLEGKAVYIDTEGTFRPERLVQIA 74 (235)
T ss_pred CCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCc---c-c---cCCCCccEEEEeCCCCcCHHHHHHHH
Confidence 699999999986 8899999999999999999999998765320 0 0 0001245777665443 23333322
Q ss_pred Hhh--hhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHH
Q psy5595 122 QDF--EENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAE 181 (293)
Q Consensus 122 ~~l--~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~ 181 (293)
+.+ ....++++..++ ...+. .++.... ..+-+.+... ++--+||+||++.+.+
T Consensus 75 ~~~~~~~~~~~~~i~~~-~~~~~---~~l~~~l--~~l~~~l~~~-~~~~liVIDSis~~~~ 129 (235)
T cd01123 75 ERFGLDPEEVLDNIYVA-RAYNS---DHQLQLL--EELEAILIES-SRIKLVIVDSVTALFR 129 (235)
T ss_pred HHhccChHhHhcCEEEE-ecCCH---HHHHHHH--HHHHHHHhhc-CCeeEEEEeCcHHHHH
Confidence 211 112234443333 22221 1211111 1222333332 3778999999998754
No 82
>PRK09354 recA recombinase A; Provisional
Probab=97.99 E-value=2.3e-05 Score=75.92 Aligned_cols=112 Identities=18% Similarity=0.298 Sum_probs=77.3
Q ss_pred CCCccccCCCceeeeeccc---ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccch
Q psy5595 39 PRDLIGDSSGKRAIDVMNS---IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNME 115 (293)
Q Consensus 39 p~e~l~~~TGiraID~l~p---igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e 115 (293)
..+.+ .||+..+|.++. +-+|.=..|+|++|+|||+|+.+++.++.+ .+..|+|+-.=+..+
T Consensus 37 ~~~~i--sTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-------------~G~~~~yId~E~s~~ 101 (349)
T PRK09354 37 DVEVI--STGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-------------AGGTAAFIDAEHALD 101 (349)
T ss_pred CCcee--cCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-------------cCCcEEEECCccchH
Confidence 34566 899999999998 667888999999999999999999988754 245778876655444
Q ss_pred hHHHHHHhhhhCCc-cccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHH
Q psy5595 116 TARFFKQDFEENGS-MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAE 181 (293)
Q Consensus 116 ~~~~~~~~l~~~g~-~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~ 181 (293)
. .++ ..-|+ +++ ++.++.+. .++ ++.+.+.+... +.-.+||+||++-+..
T Consensus 102 ~-~~a----~~lGvdld~--lli~qp~~--~Eq------~l~i~~~li~s-~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 102 P-VYA----KKLGVDIDN--LLVSQPDT--GEQ------ALEIADTLVRS-GAVDLIVVDSVAALVP 152 (349)
T ss_pred H-HHH----HHcCCCHHH--eEEecCCC--HHH------HHHHHHHHhhc-CCCCEEEEeChhhhcc
Confidence 3 221 22232 233 22333332 333 45667777666 7888999999998764
No 83
>PRK04328 hypothetical protein; Provisional
Probab=97.98 E-value=4.9e-05 Score=69.86 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=49.7
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhH
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETA 117 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~ 117 (293)
.|||.-+|-++. +-+|.-++|.|+||+|||+|+.+++.+..+ .+..|+|+...|.++..
T Consensus 6 ~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~-------------~ge~~lyis~ee~~~~i 66 (249)
T PRK04328 6 KTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-------------MGEPGVYVALEEHPVQV 66 (249)
T ss_pred cCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh-------------cCCcEEEEEeeCCHHHH
Confidence 799999999976 558999999999999999999998877543 24578999999887654
No 84
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.98 E-value=2e-05 Score=75.72 Aligned_cols=111 Identities=15% Similarity=0.264 Sum_probs=75.3
Q ss_pred CCccccCCCceeeeeccc---ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchh
Q psy5595 40 RDLIGDSSGKRAIDVMNS---IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMET 116 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~p---igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~ 116 (293)
.+.+ .||+..+|.++. +-+|.=..|+|++|+|||+|+.+++.++.+ .+..|+|+-.=+..+.
T Consensus 33 ~~~i--sTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~-------------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 33 VEVI--PTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK-------------LGGTVAFIDAEHALDP 97 (325)
T ss_pred Ccee--cCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-------------cCCCEEEECccccHHH
Confidence 3456 899999999998 668889999999999999999999988754 2346777765443332
Q ss_pred HHHHHHhhhhCCc-cccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHH
Q psy5595 117 ARFFKQDFEENGS-MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAE 181 (293)
Q Consensus 117 ~~~~~~~l~~~g~-~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~ 181 (293)
.+ +..-|+ +++ +++...+. . .-++.+++.+... +.-.+||+||++-+..
T Consensus 98 -~~----a~~lGvd~~~--l~v~~p~~--~------eq~l~i~~~li~s-~~~~lIVIDSvaal~~ 147 (325)
T cd00983 98 -VY----AKKLGVDLDN--LLISQPDT--G------EQALEIADSLVRS-GAVDLIVVDSVAALVP 147 (325)
T ss_pred -HH----HHHcCCCHHH--heecCCCC--H------HHHHHHHHHHHhc-cCCCEEEEcchHhhcc
Confidence 11 122232 223 22333332 2 2345666777666 7788999999998764
No 85
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.98 E-value=0.0001 Score=65.88 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=40.1
Q ss_pred CCccccCCCceeeeecc--cccCCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 40 RDLIGDSSGKRAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~--pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
++.+ .||+.-+|-++ -+-+|.-..|.|+||+|||+|+.+++.+..+
T Consensus 2 ~~~i--~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~ 49 (225)
T PRK09361 2 DERL--PTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAK 49 (225)
T ss_pred Cccc--cCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456 89999999999 5678999999999999999999999987753
No 86
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=97.93 E-value=3.7e-06 Score=85.84 Aligned_cols=95 Identities=33% Similarity=0.465 Sum_probs=67.7
Q ss_pred EEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccccc-------
Q psy5595 171 VILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSAAR------- 243 (293)
Q Consensus 171 li~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~~------- 243 (293)
+++=+.+...-+.|+.|.. .-..+|.-| .+.|- -|++-.||++-..-.
T Consensus 287 vlVanTSn~p~~aR~~s~y-------------tg~TiAEYf------RD~G~------~Vllm~DS~sR~AeAlREIs~~ 341 (578)
T TIGR01043 287 VLIANTSNMPVAAREASIY-------------TGITIAEYF------RDMGY------DVALMADSTSRWAEAMREISGR 341 (578)
T ss_pred EEEEECCCCCHHHHHHHHH-------------HHHHHHHHH------HHCCC------CEEEEecChhHHHHHHHHHHHh
Confidence 3444777778888887752 111222222 12232 345556777654322
Q ss_pred -cccCCCCCCCCcccccccchhhhccccc-----cCCccccccceeecCCCCC
Q psy5595 244 -EEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 244 -~~la~~r~~Pai~~~~~~s~~~r~g~~~-----~~~Gs~~~~~~~~~~~~~~ 290 (293)
+++|.+++||+|.++++.++|||||++. .|.||+|.+++|++|+||-
T Consensus 342 lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~~~~~r~GSIT~i~aVs~~ggD~ 394 (578)
T TIGR01043 342 LEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGDF 394 (578)
T ss_pred cCCCCCCCCcCccHHHHHHHHHHhhccccccCCCCCCccEeEEEEEECCCCCC
Confidence 4999999999999999999999999995 5689999999999999984
No 87
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.92 E-value=8.6e-05 Score=66.48 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=46.4
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchh
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMET 116 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~ 116 (293)
.|||.-+|-++. +-+|..++|.|+||+|||+|+.+++.+..+ .+..++|+...+..+.
T Consensus 3 ~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-------------~g~~~~~is~e~~~~~ 62 (229)
T TIGR03881 3 STGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-------------DGDPVIYVTTEESRES 62 (229)
T ss_pred CCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-------------cCCeEEEEEccCCHHH
Confidence 799999999875 679999999999999999999998876532 1335777777665543
No 88
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.90 E-value=0.00011 Score=67.91 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=67.7
Q ss_pred CCCceeeeecc----------------cccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEe
Q psy5595 46 SSGKRAIDVMN----------------SIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAA 109 (293)
Q Consensus 46 ~TGiraID~l~----------------pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 109 (293)
.|||.-+|-++ =+-+|.-.+|.|+||+|||+|+.+++.+..+ .+..++|+.
T Consensus 5 ~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~-------------~Ge~vlyis 71 (259)
T TIGR03878 5 PTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQAS-------------RGNPVLFVT 71 (259)
T ss_pred cCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHh-------------CCCcEEEEE
Confidence 79999999986 3569999999999999999999999887643 133567776
Q ss_pred cCccchhH-HHHHHhhhhCCc-----cccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHH
Q psy5595 110 MGVNMETA-RFFKQDFEENGS-----MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSY 179 (293)
Q Consensus 110 iGer~e~~-~~~~~~l~~~g~-----~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~ 179 (293)
.-+..+.. ..+.+.....|. .++ +++......... + ..+..-+....+...+ .+--++|+||++.+
T Consensus 72 ~Ee~~~~~~~~l~~~a~~~g~d~~~~~~~-l~~id~~~~~~~-~-~~~~~l~~~l~~~i~~-~~~~~vVIDSls~l 143 (259)
T TIGR03878 72 VESPANFVYTSLKERAKAMGVDFDKIEEN-IILIDAASSTEL-R-ENVPNLLATLAYAIKE-YKVKNTVIDSITGL 143 (259)
T ss_pred ecCCchHHHHHHHHHHHHcCCCHHHHhCC-EEEEECCCchhh-h-hhHHHHHHHHHHHHHh-hCCCEEEEcCchHh
Confidence 65433221 223222222221 223 444433322111 1 1222222333334444 34558899999854
No 89
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.87 E-value=6.6e-05 Score=70.77 Aligned_cols=123 Identities=14% Similarity=0.180 Sum_probs=74.3
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCcc--chhHHHHH
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVN--METARFFK 121 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer--~e~~~~~~ 121 (293)
.||++.+|.++- +-+|.-..|+|+||+|||+|+.+++.++.... .....+..+||+-.-+. ++...++.
T Consensus 78 ~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~-------~~g~~~~~~~yi~te~~f~~~rl~~~~ 150 (310)
T TIGR02236 78 TTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPE-------EKGGLGGKAVYIDTENTFRPERIMQMA 150 (310)
T ss_pred cCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCc-------ccCCCcceEEEEECCCCCCHHHHHHHH
Confidence 799999999987 77899999999999999999999998874210 00011347899988773 44444333
Q ss_pred Hhhh--hCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcC-CceEEEecchhHHHHH
Q psy5595 122 QDFE--ENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE-KHVLVILTDMSSYAEA 182 (293)
Q Consensus 122 ~~l~--~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G-~~VLli~Dsltr~a~A 182 (293)
+.+. ....+++..+ +...+.. .++ ...-.+.+.+.+. + ..-+||+||++-+-+.
T Consensus 151 ~~~gl~~~~~~~~i~i-~~~~~~~--~~~---~lld~l~~~i~~~-~~~~~lVVIDSisa~~r~ 207 (310)
T TIGR02236 151 EARGLDPDEVLKNIYV-ARAYNSN--HQM---LLVEKAEDLIKEL-NNPVKLLIVDSLTSHFRA 207 (310)
T ss_pred HHcCCCHHHHhhceEE-EecCCHH--HHH---HHHHHHHHHHHhc-CCCceEEEEecchHhhhH
Confidence 3221 0112334333 3322221 111 1122355666553 3 2449999999987543
No 90
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.87 E-value=0.00012 Score=66.51 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=49.1
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhH
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETA 117 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~ 117 (293)
.|||.-+|-++. +-+|.-++|.|+||+|||+|+.+++.+..+ .+..|+|+...|.+++.
T Consensus 4 ~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~-------------~ge~~lyvs~ee~~~~i 64 (237)
T TIGR03877 4 KTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-------------MGEPGIYVALEEHPVQV 64 (237)
T ss_pred ccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH-------------cCCcEEEEEeeCCHHHH
Confidence 799999999875 779999999999999999999998877533 24578999988876543
No 91
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.80 E-value=0.00014 Score=65.57 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=49.3
Q ss_pred CccccCCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchh
Q psy5595 41 DLIGDSSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMET 116 (293)
Q Consensus 41 e~l~~~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~ 116 (293)
+.+ .|||.-+|-++. +-+|.-++|.|++|+|||+|+.+++.+..+ .+..|+|+..-+..++
T Consensus 5 ~~~--~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-------------~g~~~~y~~~e~~~~~ 67 (234)
T PRK06067 5 EII--STGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-------------QGKKVYVITTENTSKS 67 (234)
T ss_pred eEE--ecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-------------CCCEEEEEEcCCCHHH
Confidence 346 899999999985 679999999999999999999999877543 2457888888766543
No 92
>PRK12377 putative replication protein; Provisional
Probab=97.75 E-value=5.5e-05 Score=70.04 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=23.3
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.+.|.|++|+|||+|+..|++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999874
No 93
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.74 E-value=0.0003 Score=62.04 Aligned_cols=103 Identities=16% Similarity=0.232 Sum_probs=59.6
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCc-cchhHHHHHHhhhhCCccccEEEE
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGV-NMETARFFKQDFEENGSMENVCLF 136 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGe-r~e~~~~~~~~l~~~g~~~~tvvv 136 (293)
+-+|+=..|.|+||+|||+|+.+++.+..+ .+..++|+-.-+ .++....+.+...+ ..+++ +++
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~-------------~g~~v~yi~~e~~~~~rl~~~~~~~~~-~~~~~-i~~ 73 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAAR-------------QGKKVVYIDTEGLSPERFKQIAEDRPE-RALSN-FIV 73 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh-------------CCCeEEEEECCCCCHHHHHHHHHhChH-HHhcC-EEE
Confidence 457999999999999999999999988753 234678887754 44433333222111 11234 333
Q ss_pred eeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHH
Q psy5595 137 LNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEA 182 (293)
Q Consensus 137 ~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A 182 (293)
+...+ +.+.. .....+.+.+.+ ++--+||+||++.+.++
T Consensus 74 ~~~~~--~~~~~---~~~~~l~~~~~~--~~~~lvVIDSis~l~~~ 112 (209)
T TIGR02237 74 FEVFD--FDEQG---VAIQKTSKFIDR--DSASLVVVDSFTALYRL 112 (209)
T ss_pred EECCC--HHHHH---HHHHHHHHHHhh--cCccEEEEeCcHHHhHH
Confidence 33322 12211 112223344433 34458899999988654
No 94
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=97.72 E-value=1.5e-05 Score=81.45 Aligned_cols=61 Identities=34% Similarity=0.570 Sum_probs=50.2
Q ss_pred EEecCCCcccccc--------ccccCCCCCCCCcccccccchhhhccccc-----cCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAA--------REEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~--------~~~la~~r~~Pai~~~~~~s~~~r~g~~~-----~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++-.||.+--.- -+++|.+++||++..+++..+|||+|++. .+.||+|.+++|++++||-
T Consensus 327 Vll~~DS~tR~AeAlREIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~~~~~~~~~~GSIT~i~aVs~~ggD~ 400 (591)
T TIGR01042 327 VSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGDF 400 (591)
T ss_pred EEEEecChHHHHHHHHHHHhccCCCCCCCCcCccHHHHHHHHHHhccCCccCCCCCCCccEEEEEEEECCCCCC
Confidence 4444566654322 14899999999999999999999999986 5689999999999999984
No 95
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.69 E-value=0.00034 Score=67.80 Aligned_cols=126 Identities=15% Similarity=0.157 Sum_probs=76.8
Q ss_pred CCccccCCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCc--cch
Q psy5595 40 RDLIGDSSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGV--NME 115 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGe--r~e 115 (293)
...+ .||++.+|-++- |-+|.=..|+|++|+|||+|+.+++-++..-. ++...+..++|+-.-+ +++
T Consensus 105 ~~~i--sTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~-------~~gg~~~~vvyIdTE~tF~pe 175 (344)
T PLN03187 105 VVRI--TTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPT-------EMGGGNGKVAYIDTEGTFRPD 175 (344)
T ss_pred Ccee--cCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcch-------hhCCCCceEEEEEcCCCCCHH
Confidence 3446 899999999987 66899999999999999999999987664200 0111235788887766 456
Q ss_pred hHHHHHHhhh--hCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHH
Q psy5595 116 TARFFKQDFE--ENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEA 182 (293)
Q Consensus 116 ~~~~~~~~l~--~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A 182 (293)
....+-+.+. ...++++ +.+. .... ..++... -..+.+.+.+ .+--|||+||++-+-++
T Consensus 176 Rl~~ia~~~g~d~~~~l~~-I~~~-~~~~-~e~~~~~---l~~l~~~i~~--~~~~LvVIDSital~r~ 236 (344)
T PLN03187 176 RIVPIAERFGMDADAVLDN-IIYA-RAYT-YEHQYNL---LLGLAAKMAE--EPFRLLIVDSVIALFRV 236 (344)
T ss_pred HHHHHHHHcCCChhhhcCe-EEEe-cCCC-HHHHHHH---HHHHHHHHHh--cCCCEEEEeCcHHhhhc
Confidence 6555544332 1223444 2222 2222 1222211 1223334443 45668999999987553
No 96
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.68 E-value=0.00082 Score=61.57 Aligned_cols=45 Identities=7% Similarity=0.112 Sum_probs=38.9
Q ss_pred CCccccCCCceeeeecc-cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 40 RDLIGDSSGKRAIDVMN-SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~-pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++-+ .||+..+|-++ -+.+|+-.+|.|++|+|||+++.+++.+..
T Consensus 10 ~~~~--~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~ 55 (271)
T cd01122 10 NEEV--WWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLI 55 (271)
T ss_pred ccCC--CCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3445 89999999975 477899999999999999999999998874
No 97
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.68 E-value=0.00029 Score=70.99 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=51.0
Q ss_pred CCccccCCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhH
Q psy5595 40 RDLIGDSSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETA 117 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~ 117 (293)
.+.+ .|||..+|-++. +-+|.-++|.|++|+|||+|+.+++.+..+ .+..++|+..-+..+..
T Consensus 252 ~~~~--~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~-------------~g~~~~yis~e~~~~~i 316 (509)
T PRK09302 252 NERI--SSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACR-------------RGERCLLFAFEESRAQL 316 (509)
T ss_pred cccc--cCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHh-------------CCCcEEEEEecCCHHHH
Confidence 3456 899999999986 889999999999999999999999987753 23467787776665543
No 98
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.59 E-value=0.00019 Score=71.79 Aligned_cols=41 Identities=27% Similarity=0.292 Sum_probs=38.3
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.||+.-+|-++. +-+|+-++|.|+||+|||+|+.+++.+..
T Consensus 77 ~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a 119 (454)
T TIGR00416 77 SSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA 119 (454)
T ss_pred ccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 899999999984 88999999999999999999999988875
No 99
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.57 E-value=0.00026 Score=75.03 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=74.0
Q ss_pred CCccccCCCceeeeeccc---ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchh
Q psy5595 40 RDLIGDSSGKRAIDVMNS---IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMET 116 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~p---igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~ 116 (293)
.+.+ .||+..+|.++. +-+|.-..|+|++|+|||+|+.+++.++.+ .+..|+|+---+..+.
T Consensus 38 v~~i--sTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~-------------~G~~v~yId~E~t~~~ 102 (790)
T PRK09519 38 ISVI--PTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-------------AGGVAAFIDAEHALDP 102 (790)
T ss_pred Ccee--cCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-------------cCCcEEEECCccchhH
Confidence 3456 899999999997 678999999999999999999988777643 2346777765554331
Q ss_pred HHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHH
Q psy5595 117 ARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAE 181 (293)
Q Consensus 117 ~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~ 181 (293)
+ ....-|+--..++ +...+. .++ .+.+++.+..+ ++--|||+||++-+..
T Consensus 103 -~----~A~~lGvDl~~ll-v~~~~~--~E~------~l~~i~~lv~~-~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 103 -D----YAKKLGVDTDSLL-VSQPDT--GEQ------ALEIADMLIRS-GALDIVVIDSVAALVP 152 (790)
T ss_pred -H----HHHHcCCChhHeE-EecCCC--HHH------HHHHHHHHhhc-CCCeEEEEcchhhhcc
Confidence 1 1222232111222 333332 233 44556666555 7888999999997763
No 100
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.56 E-value=0.00037 Score=66.17 Aligned_cols=127 Identities=16% Similarity=0.207 Sum_probs=74.8
Q ss_pred CCccccCCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCcc--ch
Q psy5595 40 RDLIGDSSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVN--ME 115 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer--~e 115 (293)
...+ .||+.-+|-++. +-+|.-..|+|++|+|||+|+.+++.++.... .+...+..++|+-.-+. ++
T Consensus 81 ~~~~--~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~-------~~gg~~~~~~yi~te~~f~~~ 151 (317)
T PRK04301 81 VGKI--TTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPE-------EKGGLEGKAVYIDTEGTFRPE 151 (317)
T ss_pred CCcc--CCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhcccc-------ccCCCCceEEEEeCCCCcCHH
Confidence 3445 799999999876 77899999999999999999999998874210 00012347888888773 44
Q ss_pred hHHHHHHhhh--hCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHH
Q psy5595 116 TARFFKQDFE--ENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEA 182 (293)
Q Consensus 116 ~~~~~~~~l~--~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A 182 (293)
...++.+.+. ...++++.. ++...+. .++.. ..-.+.+.+.+. .+--|||+||++-+-+.
T Consensus 152 rl~~~~~~~g~~~~~~l~~i~-~~~~~~~--~~~~~---~~~~l~~~i~~~-~~~~lvVIDSisa~~~~ 213 (317)
T PRK04301 152 RIEQMAEALGLDPDEVLDNIH-VARAYNS--DHQML---LAEKAEELIKEG-ENIKLVIVDSLTAHFRA 213 (317)
T ss_pred HHHHHHHHcCCChHhhhccEE-EEeCCCH--HHHHH---HHHHHHHHHhcc-CceeEEEEECchHHhhh
Confidence 4444433221 112234422 2322211 22211 112233333331 24459999999987544
No 101
>PRK06921 hypothetical protein; Provisional
Probab=97.53 E-value=0.00022 Score=66.43 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=24.7
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+..+.+.|++|+|||+|+..|++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 578899999999999999999999874
No 102
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.51 E-value=0.00042 Score=66.19 Aligned_cols=125 Identities=16% Similarity=0.211 Sum_probs=74.6
Q ss_pred CccccCCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCcc--chh
Q psy5595 41 DLIGDSSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVN--MET 116 (293)
Q Consensus 41 e~l~~~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer--~e~ 116 (293)
..+ .||++.+|-++- +-+|.=..|+|+||+|||+|+.+++-++.... ++...+..++|+-.-+. ++.
T Consensus 76 ~~i--sTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~-------~~gg~~~~vvYIdtE~~f~~eR 146 (313)
T TIGR02238 76 LKI--TTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPR-------EMGGGNGKVAYIDTEGTFRPDR 146 (313)
T ss_pred cee--CCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcch-------hhcCCCCeEEEEEcCCCCCHHH
Confidence 346 799999999976 77899999999999999999999887653200 00112346888876653 555
Q ss_pred HHHHHHhhh--hCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHH
Q psy5595 117 ARFFKQDFE--ENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEA 182 (293)
Q Consensus 117 ~~~~~~~l~--~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A 182 (293)
...+-+.+. ...++++ +.++.. .. .++... .-..+.+.+.+ ++--|||+||++-+-++
T Consensus 147 i~~~a~~~g~d~~~~l~~-i~~~~~-~~--~e~~~~--~l~~l~~~i~~--~~~~LvVIDSisal~r~ 206 (313)
T TIGR02238 147 IRAIAERFGVDPDAVLDN-ILYARA-YT--SEHQME--LLDYLAAKFSE--EPFRLLIVDSIMALFRV 206 (313)
T ss_pred HHHHHHHcCCChHHhcCc-EEEecC-CC--HHHHHH--HHHHHHHHhhc--cCCCEEEEEcchHhhhh
Confidence 555444332 1122344 333222 11 122111 11233444443 45668999999977543
No 103
>PTZ00035 Rad51 protein; Provisional
Probab=97.51 E-value=0.00041 Score=66.88 Aligned_cols=126 Identities=13% Similarity=0.230 Sum_probs=72.9
Q ss_pred CCccccCCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCc--cch
Q psy5595 40 RDLIGDSSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGV--NME 115 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGe--r~e 115 (293)
...+ .||++.+|-++- +-+|.-..|+|++|+|||+|+.+++..+... ..+...+..++|+-.-+ +++
T Consensus 97 ~~~i--sTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp-------~~~gg~~g~vvyIdtE~~f~~e 167 (337)
T PTZ00035 97 IIRI--TTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLP-------IEQGGGEGKVLYIDTEGTFRPE 167 (337)
T ss_pred Cccc--cCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccc-------cccCCCCceEEEEEccCCCCHH
Confidence 3456 899999999985 7789999999999999999999998765310 00111234566765433 245
Q ss_pred hHHHHHHhhh--hCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHH
Q psy5595 116 TARFFKQDFE--ENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEA 182 (293)
Q Consensus 116 ~~~~~~~~l~--~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A 182 (293)
...++.+.+. ...++++. .+....+. .++.... ..+.+.+. + ++--|||+||++-+-+.
T Consensus 168 ri~~ia~~~g~~~~~~l~nI-~~~~~~~~--e~~~~~l---~~~~~~l~-~-~~~~lvVIDSital~r~ 228 (337)
T PTZ00035 168 RIVQIAERFGLDPEDVLDNI-AYARAYNH--EHQMQLL---SQAAAKMA-E-ERFALLIVDSATALFRV 228 (337)
T ss_pred HHHHHHHHhCCChHhHhhce-EEEccCCH--HHHHHHH---HHHHHHhh-c-cCccEEEEECcHHhhhh
Confidence 4544443321 11233442 22222221 1111111 12233333 3 56779999999986543
No 104
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.48 E-value=0.00074 Score=65.37 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=74.8
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCc--cchhHHHHH
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGV--NMETARFFK 121 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGe--r~e~~~~~~ 121 (293)
.||++.+|-++. +-+|.=..|+|+||+|||+|+.+++.++.... .+...+..++|+-.-+ +++...++.
T Consensus 106 ~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~-------~~gg~~g~vlyIdtE~~f~~eRl~qia 178 (342)
T PLN03186 106 TTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPL-------DQGGGEGKAMYIDTEGTFRPQRLIQIA 178 (342)
T ss_pred CCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcch-------hhCCCCceEEEEECCCCccHHHHHHHH
Confidence 899999999766 66889999999999999999999998764210 1111234688887776 456555554
Q ss_pred Hhhh--hCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHH
Q psy5595 122 QDFE--ENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEA 182 (293)
Q Consensus 122 ~~l~--~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A 182 (293)
+.+. ...++++. .++...+ ..++.... ..+.+.+. . .+--|||+||++-+-+.
T Consensus 179 ~~~~~~~~~~l~~i-~~~~~~~--~e~~~~ll---~~~~~~~~-~-~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 179 ERFGLNGADVLENV-AYARAYN--TDHQSELL---LEAASMMA-E-TRFALMIVDSATALYRT 233 (342)
T ss_pred HHcCCChhhhccce-EEEecCC--HHHHHHHH---HHHHHHhh-c-cCCCEEEEeCcHHHHHH
Confidence 4332 12234443 3333222 12222111 12233343 3 46679999999987553
No 105
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.45 E-value=0.00023 Score=64.78 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=25.0
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
...+..+.|+||+|+|||||+..+++++.
T Consensus 42 ~~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 42 QEHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34457899999999999999999999874
No 106
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.45 E-value=0.00021 Score=68.05 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=24.4
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++.+.|.|++|+|||+|+..|++.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 466789999999999999999999985
No 107
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.42 E-value=0.00093 Score=65.34 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=40.1
Q ss_pred CccccCCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 41 DLIGDSSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 41 e~l~~~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
+.+ .||+.-+|-++- +-+|+-++|.|+||+|||+|+.+++.+..+
T Consensus 62 ~ri--~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~ 108 (372)
T cd01121 62 ERI--PTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK 108 (372)
T ss_pred Ccc--ccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 356 899999999985 889999999999999999999999988753
No 108
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.42 E-value=0.0017 Score=58.02 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=44.1
Q ss_pred Cceeeeecc--cccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhH
Q psy5595 48 GKRAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETA 117 (293)
Q Consensus 48 GiraID~l~--pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~ 117 (293)
||+-+|-++ -+-+|.-++|.|+||+|||+++.+++.+..+ .+..|+|+..-+..+..
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~-------------~g~~~~y~s~e~~~~~l 59 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLK-------------NGEKAMYISLEEREERI 59 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh-------------CCCeEEEEECCCCHHHH
Confidence 566777766 3458999999999999999999999987643 23478888887765543
No 109
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.41 E-value=0.0013 Score=66.25 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=51.6
Q ss_pred CccccCCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhH
Q psy5595 41 DLIGDSSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETA 117 (293)
Q Consensus 41 e~l~~~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~ 117 (293)
+.+ .|||.-+|-++- +-+|.-++|.|+||+|||+|+.+++.+..+ .+..|+|+.--|..+..
T Consensus 243 ~~~--~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-------------~ge~~~y~s~eEs~~~i 306 (484)
T TIGR02655 243 VRV--SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA-------------NKERAILFAYEESRAQL 306 (484)
T ss_pred ccc--CCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH-------------CCCeEEEEEeeCCHHHH
Confidence 356 899999999874 779999999999999999999999998864 23478999888776544
No 110
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.40 E-value=0.0019 Score=55.32 Aligned_cols=41 Identities=10% Similarity=0.009 Sum_probs=32.2
Q ss_pred eeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhH
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETA 117 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~ 117 (293)
++|.|+||+|||+|+.+++.+..+ .+..|+|+..-|..+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-------------~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-------------RGEPGLYVTLEESPEEL 42 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-------------CCCcEEEEECCCCHHHH
Confidence 579999999999999999998754 23457788777766554
No 111
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.39 E-value=0.0009 Score=67.46 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=51.8
Q ss_pred CccccCCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHH
Q psy5595 41 DLIGDSSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETAR 118 (293)
Q Consensus 41 e~l~~~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~ 118 (293)
+.+ .|||.-+|-++- +-+|+-++|.|+||+|||+|+.+++.+..+. .+..|+|+..-|..++..
T Consensus 11 ~ri--~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~------------~ge~~lyis~ee~~~~i~ 76 (509)
T PRK09302 11 EKL--PTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKR------------FDEPGVFVTFEESPEDII 76 (509)
T ss_pred ccc--cCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh------------cCCCEEEEEccCCHHHHH
Confidence 356 899999999974 7899999999999999999999998876431 134688998888766543
No 112
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.38 E-value=0.00092 Score=66.76 Aligned_cols=107 Identities=18% Similarity=0.242 Sum_probs=67.3
Q ss_pred CccccCCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHH
Q psy5595 41 DLIGDSSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETAR 118 (293)
Q Consensus 41 e~l~~~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~ 118 (293)
+.+ .||+.-+|-++. +-+|+-++|.|+||+|||+|+.+++.+..+ ....++|+.--|..+.
T Consensus 60 ~ri--~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~-------------~g~~vlYvs~Ees~~q-- 122 (446)
T PRK11823 60 PRI--STGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA-------------AGGKVLYVSGEESASQ-- 122 (446)
T ss_pred Ccc--cCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh-------------cCCeEEEEEccccHHH--
Confidence 346 899999999985 778999999999999999999999988753 1235677654333333
Q ss_pred HHHHhhhhCCc-cccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHH
Q psy5595 119 FFKQDFEENGS-MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYA 180 (293)
Q Consensus 119 ~~~~~l~~~g~-~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a 180 (293)
+.+....-|. .++ +.+....+ .+ .+-+.+. + .+..++|+||++.+.
T Consensus 123 -i~~ra~rlg~~~~~-l~~~~e~~---l~---------~i~~~i~-~-~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 123 -IKLRAERLGLPSDN-LYLLAETN---LE---------AILATIE-E-EKPDLVVIDSIQTMY 169 (446)
T ss_pred -HHHHHHHcCCChhc-EEEeCCCC---HH---------HHHHHHH-h-hCCCEEEEechhhhc
Confidence 3322222232 222 32322211 11 1222333 3 466789999998763
No 113
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.38 E-value=0.00081 Score=67.68 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=49.3
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHH
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETAR 118 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~ 118 (293)
.|||.-+|-++. +-+|.-.+|.|+||+|||+|+.+++.+..+ + .+..|+|+...|.+++..
T Consensus 4 ~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~---------~---~ge~~lyvs~eE~~~~l~ 66 (484)
T TIGR02655 4 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII---------H---FDEPGVFVTFEESPQDII 66 (484)
T ss_pred CCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH---------h---CCCCEEEEEEecCHHHHH
Confidence 799999999987 779999999999999999999998776432 0 134688988888765543
No 114
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.37 E-value=0.00032 Score=67.48 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=29.3
Q ss_pred ceeeeecccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 49 KRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 49 iraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.+|-|.. .++.++|+|++|+|||+|+..|++.+.
T Consensus 173 ~~f~~~f~~--~~~~Lll~G~~GtGKThLa~aIa~~l~ 208 (329)
T PRK06835 173 KNFIENFDK--NNENLLFYGNTGTGKTFLSNCIAKELL 208 (329)
T ss_pred HHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 446666654 348899999999999999999999873
No 115
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.35 E-value=0.0016 Score=51.63 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=24.4
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+..+.|.|++|+|||+|+..++++..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999999873
No 116
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=97.34 E-value=8.6e-05 Score=73.86 Aligned_cols=61 Identities=38% Similarity=0.611 Sum_probs=52.8
Q ss_pred EEEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 229 ILTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
=|++--||++-+.-. +++|.+++||.+.+++++++|||+|++.. .||+|++++|.+|+||=
T Consensus 232 ~VLli~DdlTr~a~A~REIsl~~ge~P~r~GYpp~lfs~L~~l~ERag~~~~-~GSITai~~V~~p~DD~ 300 (436)
T PRK02118 232 KVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFED-GGSITIIAVTTMPGDDV 300 (436)
T ss_pred CEEEeccCchHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCCC-CeeEEEEEEEEcCCCCc
Confidence 356667888876544 49999999999999999999999999865 89999999999999984
No 117
>PRK08727 hypothetical protein; Validated
Probab=97.33 E-value=0.00052 Score=62.40 Aligned_cols=25 Identities=20% Similarity=0.326 Sum_probs=22.4
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+-+.|.|++|+|||||++.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~ 66 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE 66 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999999874
No 118
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.32 E-value=0.0016 Score=60.35 Aligned_cols=123 Identities=14% Similarity=0.231 Sum_probs=74.4
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCcc--chhHHHHH
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVN--METARFFK 121 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer--~e~~~~~~ 121 (293)
.||++.+|.++- |-.|+=.=|+|+||+|||.|+.+++-++... .+....+..+||+-..-. .+...++.
T Consensus 21 ~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~-------~~~~g~~~~vvyidTe~~f~~~Rl~~i~ 93 (256)
T PF08423_consen 21 STGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLP-------EEIGGLGGKVVYIDTEGTFSPERLQQIA 93 (256)
T ss_dssp --SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSG-------GCTTSSSSEEEEEESSSSS-HHHHHHHH
T ss_pred CCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcc-------cccccCCCceEEEeCCCCCCHHHHHHHh
Confidence 799999999983 7788899999999999999999999887421 011123457888755442 34444444
Q ss_pred Hhh--hhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHH
Q psy5595 122 QDF--EENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEAL 183 (293)
Q Consensus 122 ~~l--~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~ 183 (293)
+.. ....++++..+ ....+. .++..... .+...+. + .+--|||+||++.+-+..
T Consensus 94 ~~~~~~~~~~l~~I~v-~~~~~~---~~l~~~L~--~l~~~l~-~-~~ikLIVIDSIaalfr~e 149 (256)
T PF08423_consen 94 ERFGLDPEEILDNIFV-IRVFDL---EELLELLE--QLPKLLS-E-SKIKLIVIDSIAALFRSE 149 (256)
T ss_dssp HHTTS-HHHHHHTEEE-EE-SSH---HHHHHHHH--HHHHHHH-H-SCEEEEEEETSSHHHHHH
T ss_pred hccccccchhhhceee-eecCCH---HHHHHHHH--HHHhhcc-c-cceEEEEecchHHHHHHH
Confidence 322 22234566444 333332 22221111 2334444 4 567899999999987653
No 119
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=97.31 E-value=0.0001 Score=80.05 Aligned_cols=69 Identities=14% Similarity=0.074 Sum_probs=59.0
Q ss_pred CCCCceeEEEe-cceeecccccCCCccccCCCC---------ccccCCCceeeeecccccCCceeeEecCCCCChhHHHH
Q psy5595 10 LTPDDLLYLEF-LTKFEKNFVSQEGERSFTPRD---------LIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAA 79 (293)
Q Consensus 10 ~~~~~~~~~e~-~~~~~~~~~~~~p~~r~~p~e---------~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~ 79 (293)
-.+|.++++|+ .++.++..|.| .||.+.|++ || .||+|+||+|+|+.||...+|+|++|+||+.+-.
T Consensus 169 ~~~~~~~~~~~~~g~~~~~~~~~-~wpvr~~r~~~~~~~~~~pl--~tgqrv~d~~fp~~~ggt~~~~G~~G~GKCV~~d 245 (1017)
T PRK14698 169 TIEEVIAKVKTPSGEIKELKMYQ-RWPVRVKRPYKEKLPPEVPL--ITGQRVIDTFFPQAKGGTAAIPGPFGSGKCVDGD 245 (1017)
T ss_pred ceeeEEEEEEcCCCCEEEeeeEe-cCCCCCCCcccccCCCCccc--ccccchHhhhhhhhcCceeEeccCCCcCcccCCc
Confidence 45789999998 67777888998 599888875 45 8999999999999999999999999999976544
Q ss_pred HH
Q psy5595 80 QI 81 (293)
Q Consensus 80 ~I 81 (293)
.+
T Consensus 246 t~ 247 (1017)
T PRK14698 246 TL 247 (1017)
T ss_pred ce
Confidence 33
No 120
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.31 E-value=0.0013 Score=62.80 Aligned_cols=121 Identities=13% Similarity=0.219 Sum_probs=69.1
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCc--cchhHHHHH
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGV--NMETARFFK 121 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGe--r~e~~~~~~ 121 (293)
.||++.+|-++. +-+|.=..|.|++|+|||+|+.+++.++.... .+...+..++|+-.-+ +++...++.
T Consensus 79 ~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~-------~~Gg~~~~vvyIdtE~~f~~~Rl~~ia 151 (316)
T TIGR02239 79 TTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPI-------DQGGGEGKALYIDTEGTFRPERLLAIA 151 (316)
T ss_pred CCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhh-------hcCCCCceEEEEECCCCCCHHHHHHHH
Confidence 899999999776 66799999999999999999999998653210 0111123567765544 234343333
Q ss_pred Hhhh--hCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHH
Q psy5595 122 QDFE--ENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAE 181 (293)
Q Consensus 122 ~~l~--~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~ 181 (293)
+.+. ...++++.. +....+ +.++.... -.+.+.+. . .+--|||+||++-+-+
T Consensus 152 ~~~~~~~~~~l~~i~-~~~~~~--~~~~~~~l---~~~~~~~~-~-~~~~LvVIDSI~al~r 205 (316)
T TIGR02239 152 ERYGLNPEDVLDNVA-YARAYN--TDHQLQLL---QQAAAMMS-E-SRFALLIVDSATALYR 205 (316)
T ss_pred HHcCCChHHhhccEE-EEecCC--hHHHHHHH---HHHHHhhc-c-CCccEEEEECcHHHhh
Confidence 3221 112233322 222222 12221111 12223333 3 4567999999998744
No 121
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.29 E-value=0.00053 Score=63.39 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.7
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+-+.+.|++|+|||+|+..|++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999874
No 122
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.00091 Score=65.85 Aligned_cols=88 Identities=9% Similarity=0.181 Sum_probs=60.1
Q ss_pred eeeeecccccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCc
Q psy5595 50 RAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGS 129 (293)
Q Consensus 50 raID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~ 129 (293)
+.|.-++-=++=..+.+.||||+|||||+.-|+..++. ++
T Consensus 37 ~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~--------------~f-------------------------- 76 (436)
T COG2256 37 KPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA--------------AF-------------------------- 76 (436)
T ss_pred chHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC--------------ce--------------------------
Confidence 44444444445557889999999999999999987742 10
Q ss_pred cccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHHHHHh
Q psy5595 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVS 187 (293)
Q Consensus 130 ~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~reis 187 (293)
.-+.++.+- ... ..-++.-|+.++.. |+.++|++|.+-||-.++.+.-
T Consensus 77 ----~~~sAv~~g--vkd---lr~i~e~a~~~~~~-gr~tiLflDEIHRfnK~QQD~l 124 (436)
T COG2256 77 ----EALSAVTSG--VKD---LREIIEEARKNRLL-GRRTILFLDEIHRFNKAQQDAL 124 (436)
T ss_pred ----EEecccccc--HHH---HHHHHHHHHHHHhc-CCceEEEEehhhhcChhhhhhh
Confidence 111222222 222 34455667778877 9999999999999999998764
No 123
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.21 E-value=0.00097 Score=61.23 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=22.1
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++++||||+|||||+.-|++..+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred eEEEECCCccchhHHHHHHHhccC
Confidence 479999999999999999999885
No 124
>PRK06893 DNA replication initiation factor; Validated
Probab=97.16 E-value=0.0012 Score=59.72 Aligned_cols=24 Identities=4% Similarity=0.008 Sum_probs=21.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.|+|++|+|||||+..|++++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999874
No 125
>PRK08116 hypothetical protein; Validated
Probab=97.16 E-value=0.00082 Score=62.70 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=21.4
Q ss_pred eeEecCCCCChhHHHHHHHHHhc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++|.|++|+|||+|+..|++...
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999874
No 126
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.15 E-value=0.0037 Score=56.86 Aligned_cols=58 Identities=7% Similarity=0.098 Sum_probs=41.3
Q ss_pred CCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhH
Q psy5595 47 SGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETA 117 (293)
Q Consensus 47 TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~ 117 (293)
+++.-+|-++. +-+|+.++|.|++|+|||+|+.+++.+..+ .+..++|+...+.+++.
T Consensus 8 ~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-------------~g~~~~yi~~e~~~~~~ 67 (230)
T PRK08533 8 LSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQ-------------NGYSVSYVSTQLTTTEF 67 (230)
T ss_pred EEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-------------CCCcEEEEeCCCCHHHH
Confidence 44555555544 677999999999999999998877776532 13457888877765543
No 127
>PF13173 AAA_14: AAA domain
Probab=97.07 E-value=0.0024 Score=52.33 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=21.9
Q ss_pred CceeeEecCCCCChhHHHHHHHHHh
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
++-+.|.|+.|+|||||+.+++++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999998775
No 128
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.06 E-value=0.001 Score=68.81 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=21.5
Q ss_pred eeEecCCCCChhHHHHHHHHHhc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.|.|++|+|||||+..|++.+.
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~ 339 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYAR 339 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88899999999999999999874
No 129
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.05 E-value=0.0018 Score=61.04 Aligned_cols=115 Identities=20% Similarity=0.247 Sum_probs=75.5
Q ss_pred CCCCccccCCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEE-ecC-cc
Q psy5595 38 TPRDLIGDSSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFA-AMG-VN 113 (293)
Q Consensus 38 ~p~e~l~~~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~-~iG-er 113 (293)
...+.+ .||.+.+|-++- +-+|.-.=|||++|+|||+|+.+++-++.+ ....++|+ .-| -+
T Consensus 37 ~~~~~i--~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~-------------~g~~a~fIDtE~~l~ 101 (279)
T COG0468 37 EDIEAI--STGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQK-------------PGGKAAFIDTEHALD 101 (279)
T ss_pred hccccc--cccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhc-------------CCCeEEEEeCCCCCC
Confidence 335556 799999999887 336777889999999999999999999865 23355554 444 34
Q ss_pred chhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCC--ceEEEecchhHHHHHH
Q psy5595 114 METARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK--HVLVILTDMSSYAEAL 183 (293)
Q Consensus 114 ~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~--~VLli~Dsltr~a~A~ 183 (293)
++....+-... ++ -++++..+. ..-++.+++.+... +. --|+|+||++-+-++.
T Consensus 102 p~r~~~l~~~~-----~d--~l~v~~~~~--------~e~q~~i~~~~~~~-~~~~i~LvVVDSvaa~~r~~ 157 (279)
T COG0468 102 PERAKQLGVDL-----LD--NLLVSQPDT--------GEQQLEIAEKLARS-GAEKIDLLVVDSVAALVRAE 157 (279)
T ss_pred HHHHHHHHHhh-----hc--ceeEecCCC--------HHHHHHHHHHHHHh-ccCCCCEEEEecCcccchhh
Confidence 55555554432 11 234444444 33344555555554 44 6799999998766654
No 130
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.05 E-value=0.0029 Score=55.21 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=54.2
Q ss_pred eeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccc-hhHHHHHHhhhhCCccccEEEEeeCCCC
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNM-ETARFFKQDFEENGSMENVCLFLNLAND 142 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~-e~~~~~~~~l~~~g~~~~tvvv~stsd~ 142 (293)
++|.|++|+|||+++.+++.+.+ ..++|++..+.. .+...-.+..++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~----------------~~~~y~at~~~~d~em~~rI~~H~~~R-------------- 51 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG----------------GPVTYIATAEAFDDEMAERIARHRKRR-------------- 51 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC----------------CCeEEEEccCcCCHHHHHHHHHHHHhC--------------
Confidence 58999999999999999986632 256777777653 33332222222111
Q ss_pred chhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHHH
Q psy5595 143 PTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALR 184 (293)
Q Consensus 143 ~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~r 184 (293)
..++........+.+.+.+. .++-++++|++|-|.....
T Consensus 52 --~~~w~t~E~~~~l~~~l~~~-~~~~~VLIDclt~~~~n~l 90 (169)
T cd00544 52 --PAHWRTIETPRDLVSALKEL-DPGDVVLIDCLTLWVTNLL 90 (169)
T ss_pred --CCCceEeecHHHHHHHHHhc-CCCCEEEEEcHhHHHHHhC
Confidence 11222333344566666554 2344799999999988764
No 131
>PRK05642 DNA replication initiation factor; Validated
Probab=97.05 E-value=0.0011 Score=60.37 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=21.0
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.|.|++|+|||||++.|+++..
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~ 70 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFE 70 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999988763
No 132
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.01 E-value=0.0027 Score=51.11 Aligned_cols=95 Identities=11% Similarity=0.113 Sum_probs=49.4
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccch---hHHHHHHhhhhCCccccEEEE
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNME---TARFFKQDFEENGSMENVCLF 136 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e---~~~~~~~~l~~~g~~~~tvvv 136 (293)
+++-+.|.|++|+|||+++..++++..... ... ....++++-+..... -...+.+.+.... ..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~--- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEA-------EIK-NHPDVIYVNCPSSRTPRDFAQEILEALGLPL---KS--- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHH-------HHC-CCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS---SS---
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhh-------hcc-CCCcEEEEEeCCCCCHHHHHHHHHHHhCccc---cc---
Confidence 355678999999999999999999863100 000 024566666665542 2233333332221 11
Q ss_pred eeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHH
Q psy5595 137 LNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYA 180 (293)
Q Consensus 137 ~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a 180 (293)
+.......-.+.+.+... +.++|++|+.-++.
T Consensus 69 ----------~~~~~~l~~~~~~~l~~~--~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 69 ----------RQTSDELRSLLIDALDRR--RVVLLVIDEADHLF 100 (131)
T ss_dssp ----------TS-HHHHHHHHHHHHHHC--TEEEEEEETTHHHH
T ss_pred ----------cCCHHHHHHHHHHHHHhc--CCeEEEEeChHhcC
Confidence 111122223344555543 44899999998875
No 133
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.00 E-value=0.0015 Score=58.98 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=22.6
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+-+-|+|++|+|||||++.|++...
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~ 59 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQ 59 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 134
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=96.99 E-value=0.0003 Score=70.58 Aligned_cols=62 Identities=63% Similarity=1.003 Sum_probs=53.2
Q ss_pred EEEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 229 ILTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
=|++--||+|-..-. ++.|.+++||...++.+...|||+|++..+.||+|.+++|.+++||-
T Consensus 239 ~VLli~DslTR~A~A~REIsl~~gepP~~~GYP~svfs~l~~LlERaG~~~~~~GSITai~tV~~~gdD~ 308 (458)
T TIGR01041 239 HVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVKGKKGSITQMPILTMPGDDI 308 (458)
T ss_pred cEEEEEcChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccCCCCCcceEEEEEEEcCCCCC
Confidence 355557788765433 49999999999999999999999999887799999999999999984
No 135
>PRK05973 replicative DNA helicase; Provisional
Probab=96.99 E-value=0.0051 Score=56.71 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=36.8
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchh
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMET 116 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~ 116 (293)
-+-+|+=++|.|+||+|||+++.+++.++.+ .+..++|...-|..++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-------------~Ge~vlyfSlEes~~~ 106 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMK-------------SGRTGVFFTLEYTEQD 106 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-------------cCCeEEEEEEeCCHHH
Confidence 4678999999999999999999999998754 1335777766665433
No 136
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.96 E-value=0.0019 Score=64.24 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=22.5
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..+.|.|++|+|||||+..|++.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~ 173 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYIL 173 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999875
No 137
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.94 E-value=0.0027 Score=61.07 Aligned_cols=109 Identities=19% Similarity=0.247 Sum_probs=67.8
Q ss_pred CCccccCCCceeeeeccc---ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchh
Q psy5595 40 RDLIGDSSGKRAIDVMNS---IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMET 116 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~p---igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~ 116 (293)
.+.+ .||...+|..++ +.+|.-+-|+|++++|||+|+...+.++.+ .+..|+|+-.- ..=.
T Consensus 31 ~~~i--~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~-------------~g~~~a~ID~e-~~ld 94 (322)
T PF00154_consen 31 IEVI--STGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-------------QGGICAFIDAE-HALD 94 (322)
T ss_dssp S-EE----S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-------------TT-EEEEEESS-S---
T ss_pred cceE--ecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhc-------------ccceeEEecCc-ccch
Confidence 3456 899999999998 457888899999999999999988887754 25677777552 2211
Q ss_pred HHHHHHhhhhCCc-cccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHH
Q psy5595 117 ARFFKQDFEENGS-MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSY 179 (293)
Q Consensus 117 ~~~~~~~l~~~g~-~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~ 179 (293)
..+ . ..-|+ +++ ++++ ..+. . .-++.++|.+... |.-.++|+||+..+
T Consensus 95 ~~~-a---~~lGvdl~r-llv~-~P~~--~------E~al~~~e~lirs-g~~~lVVvDSv~al 143 (322)
T PF00154_consen 95 PEY-A---ESLGVDLDR-LLVV-QPDT--G------EQALWIAEQLIRS-GAVDLVVVDSVAAL 143 (322)
T ss_dssp HHH-H---HHTT--GGG-EEEE-E-SS--H------HHHHHHHHHHHHT-TSESEEEEE-CTT-
T ss_pred hhH-H---HhcCccccc-eEEe-cCCc--H------HHHHHHHHHHhhc-ccccEEEEecCccc
Confidence 122 2 22233 344 3333 3332 2 3467888888776 77789999998766
No 138
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.92 E-value=0.0035 Score=50.09 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.3
Q ss_pred eeEecCCCCChhHHHHHHHHHhc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++|.|++|+|||+++..++++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 58999999999999999999974
No 139
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.92 E-value=0.0057 Score=58.96 Aligned_cols=96 Identities=11% Similarity=0.166 Sum_probs=55.7
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchh---HHHHHHhhhhCCccccEEE
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMET---ARFFKQDFEENGSMENVCL 135 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~---~~~~~~~l~~~g~~~~tvv 135 (293)
++++.+.|.|++|+|||+++..++++.... .....++|+-+-+.... ...+.+.+.....
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~-----------~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~------ 115 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEI-----------AVKVVYVYINCQIDRTRYAIFSEIARQLFGHPP------ 115 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHh-----------cCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCC------
Confidence 456789999999999999999999887421 12356777766554332 2333343322100
Q ss_pred EeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHH
Q psy5595 136 FLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYA 180 (293)
Q Consensus 136 v~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a 180 (293)
.....+ . ...--.+.+++... ++.++|++|++-.+.
T Consensus 116 --~~~~~~-~-----~~~~~~~~~~l~~~-~~~~viviDE~d~l~ 151 (394)
T PRK00411 116 --PSSGLS-F-----DELFDKIAEYLDER-DRVLIVALDDINYLF 151 (394)
T ss_pred --CCCCCC-H-----HHHHHHHHHHHHhc-CCEEEEEECCHhHhh
Confidence 000000 0 11111233455544 788999999998776
No 140
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=96.91 E-value=0.00035 Score=70.10 Aligned_cols=62 Identities=63% Similarity=1.019 Sum_probs=53.1
Q ss_pred EEEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 229 ILTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
=|++--||+|-..-. ++.|.+++||...++.+...|||+|++..+.||+|.+++|.+++||-
T Consensus 241 ~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~~~~~~GSITai~~V~~~gdD~ 310 (460)
T PRK04196 241 HVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIKGKKGSITQIPILTMPDDDI 310 (460)
T ss_pred cEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhcCCCCCeeeEEEEEEEcCCCCC
Confidence 355556788765333 48999999999999999999999999987899999999999999984
No 141
>PF05729 NACHT: NACHT domain
Probab=96.88 E-value=0.0049 Score=51.02 Aligned_cols=25 Identities=12% Similarity=0.120 Sum_probs=22.0
Q ss_pred eeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
-+.|.|++|+|||+++..++.+..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh
Confidence 3689999999999999999988754
No 142
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.84 E-value=0.0028 Score=58.36 Aligned_cols=29 Identities=7% Similarity=0.023 Sum_probs=25.2
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+...+..+++.||||+|||+++..|++..
T Consensus 38 ~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 38 TSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 44667789999999999999999999875
No 143
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0044 Score=54.55 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=25.8
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhcccccC
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAGLVKMP 91 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~~~~~~ 91 (293)
.|+.|+|+||+||||++..|+...+..|+.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 379999999999999999999997765543
No 144
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.82 E-value=0.0062 Score=52.58 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=25.5
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+|+-..|.|++|+|||+++.+|+....
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999998875
No 145
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.80 E-value=0.0041 Score=54.26 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=52.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccc-hh-HHHHHHhhhhCCccccEEEEeeCC
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNM-ET-ARFFKQDFEENGSMENVCLFLNLA 140 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~-e~-~~~~~~~l~~~g~~~~tvvv~sts 140 (293)
+++|.|++|+|||+++..++.+.++ -++|++.++-. ++ ...+.+...+.+ ..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~----------------~~~~iat~~~~~~e~~~ri~~h~~~R~---~~------- 56 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL----------------QVLYIATAQPFDDEMAARIAHHRQRRP---AH------- 56 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC----------------CcEeCcCCCCChHHHHHHHHHHHhcCC---CC-------
Confidence 6899999999999999999876531 25677777643 22 244444333332 11
Q ss_pred CCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHH
Q psy5595 141 NDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEAL 183 (293)
Q Consensus 141 d~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~ 183 (293)
+.....-..+++.+.+...+.-++++|+++.|....
T Consensus 57 -------w~t~E~~~~l~~~i~~~~~~~~~VlID~Lt~~~~n~ 92 (170)
T PRK05800 57 -------WQTVEEPLDLAELLRADAAPGRCVLVDCLTTWVTNL 92 (170)
T ss_pred -------CeEecccccHHHHHHhhcCCCCEEEehhHHHHHHHH
Confidence 111111222455554411223379999999998754
No 146
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.80 E-value=0.0042 Score=62.14 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=21.3
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.|.|++|+|||||++.|++...
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~ 166 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIE 166 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999998653
No 147
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.70 E-value=0.0042 Score=56.85 Aligned_cols=95 Identities=16% Similarity=0.255 Sum_probs=52.9
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccch---hHHHHHHhhhhCCccccEEE
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNME---TARFFKQDFEENGSMENVCL 135 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e---~~~~~~~~l~~~g~~~~tvv 135 (293)
...+.++|.|.+|+|||+|+.++++.... .+ .-+.++++-.+.... ....+.+.+.... ...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~---------~~--~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~- 81 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRI---------KN--RFDGVIWVSLSKNPSLEQLLEQILRQLGEPD---SSI- 81 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHH---------CC--CCTEEEEEEEES-SCCHHHHHHHHHHHTCC----STS-
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccc---------cc--ccccccccccccccccccccccccccccccc---ccc-
Confidence 45677899999999999999999977321 11 224566666665533 2344444443321 000
Q ss_pred EeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHH
Q psy5595 136 FLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYA 180 (293)
Q Consensus 136 v~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a 180 (293)
.+..-. ....-.+.+.++ +++.|+|+||+-...
T Consensus 82 ----~~~~~~-----~~~~~~l~~~L~---~~~~LlVlDdv~~~~ 114 (287)
T PF00931_consen 82 ----SDPKDI-----EELQDQLRELLK---DKRCLLVLDDVWDEE 114 (287)
T ss_dssp ----SCCSSH-----HHHHHHHHHHHC---CTSEEEEEEEE-SHH
T ss_pred ----cccccc-----ccccccchhhhc---cccceeeeeeecccc
Confidence 011111 112223344443 569999999987655
No 148
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.69 E-value=0.0062 Score=56.72 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.+.++|.||+|+|||+|+..|+++.+
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 345689999999999999999999874
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.68 E-value=0.0034 Score=62.72 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=21.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-+.|.|++|+|||||+..|++...
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~ 166 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALR 166 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999874
No 150
>KOG1969|consensus
Probab=96.67 E-value=0.0032 Score=66.03 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=22.2
Q ss_pred Ccee-eEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKI-PIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~-~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-||+ ++.||||.|||||+.-||+|+|
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG 351 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG 351 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC
Confidence 3554 5679999999999999999995
No 151
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.66 E-value=0.00084 Score=67.05 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=51.6
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||+|-..-. ++.|.+++||...++.+..+|||+|+...+.||+|.+++|.+++||-
T Consensus 250 Vll~~DslTr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~~~~GSIT~i~tVlv~gdD~ 318 (442)
T PRK08927 250 VLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGPIGEGTITGLFTVLVDGDDH 318 (442)
T ss_pred EEEEEeCcHHHHhhhhHHHHhcCCCCcccCCCcchHHHhhHHHHHhcCCCCCCeeeeeeeeeEccCCCC
Confidence 45556777765333 48899999999999999999999999877789999999999998873
No 152
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.0023 Score=59.39 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=27.1
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=+.+.+|+-+.|+||+|||||||+..|+--
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999999998863
No 153
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.65 E-value=0.0039 Score=60.95 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=22.8
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+..+.|.|++|+|||+|+..|++...
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~ 161 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL 161 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 34578999999999999999999874
No 154
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=96.65 E-value=0.00085 Score=67.26 Aligned_cols=62 Identities=74% Similarity=1.095 Sum_probs=53.1
Q ss_pred EEEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 229 ILTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
=|++--||+|-..-. ++.|.+++||...++.+...|||+|++.++.||+|.+++|.+++||-
T Consensus 248 ~VLl~~DslTr~A~A~REisl~~gepP~~~GYP~svfs~l~~L~ERaG~~~~~~GSITai~tV~~~~dD~ 317 (466)
T TIGR01040 248 HVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDI 317 (466)
T ss_pred cEEEeccChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHHHHHhhccccCCCCCcceEEEEEEECCCCCC
Confidence 355667788765433 48999999999999999999999999877789999999999999984
No 155
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.62 E-value=0.025 Score=51.18 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=33.4
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhcccccCCccccC--CC-CCceEEEEEecCccc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD--DS-EDNFAIVFAAMGVNM 114 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~--~~-~~~~~~V~~~iGer~ 114 (293)
|+=.+|.|++|+|||+|+.+++.++++ |..++. .. .....++|+..-+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~----G~~~~g~~~~~~~~~~Vlyi~~Ed~~ 53 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMAL----GKNLFGGGLKVTEPGRVVYLSAEDPR 53 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhc----CccccCCccccCCCceEEEEECCCCH
Confidence 455789999999999999999988753 555554 11 123456666544333
No 156
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.58 E-value=0.037 Score=47.28 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=32.6
Q ss_pred eeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccc-hhHHHHHHhh
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNM-ETARFFKQDF 124 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~-e~~~~~~~~l 124 (293)
+++.|++|+|||+++..++....+ .+..++++-++-++ +..+.+....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~-------------~g~~v~~i~~D~~~~~~~~~l~~~~ 51 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK-------------KGKKVLLVAADTYRPAAIEQLRVLG 51 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-------------CCCcEEEEEcCCCChHHHHHHHHhc
Confidence 678999999999999999887643 12356666667543 4444444433
No 157
>CHL00181 cbbX CbbX; Provisional
Probab=96.57 E-value=0.0052 Score=57.89 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=25.5
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+-.+|-.+++.|+||+|||+++..+++...
T Consensus 55 ~~~~~~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 55 SSNPGLHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678899999999999999999988763
No 158
>PRK14974 cell division protein FtsY; Provisional
Probab=96.57 E-value=0.02 Score=55.36 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=53.8
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCc-cchhHHHHHHhhhhCCccccEEEEe
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGV-NMETARFFKQDFEENGSMENVCLFL 137 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGe-r~e~~~~~~~~l~~~g~~~~tvvv~ 137 (293)
+++..+++.|++|+||||++..++.+... .+..++++.++- |..-.+++.......|+ -++-.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~-------------~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv---~v~~~ 201 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKK-------------NGFSVVIAAGDTFRAGAIEQLEEHAERLGV---KVIKH 201 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-------------cCCeEEEecCCcCcHHHHHHHHHHHHHcCC---ceecc
Confidence 45788999999999999999999987642 123455566653 44444455433333331 11111
Q ss_pred eCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHH
Q psy5595 138 NLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSY 179 (293)
Q Consensus 138 stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~ 179 (293)
....+|. ...+.+ .++.+.. ++| +||+|.-.|.
T Consensus 202 ~~g~dp~----~v~~~a---i~~~~~~-~~D-vVLIDTaGr~ 234 (336)
T PRK14974 202 KYGADPA----AVAYDA---IEHAKAR-GID-VVLIDTAGRM 234 (336)
T ss_pred cCCCCHH----HHHHHH---HHHHHhC-CCC-EEEEECCCcc
Confidence 1122211 112222 3344444 777 8888887775
No 159
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.56 E-value=0.0028 Score=55.29 Aligned_cols=27 Identities=11% Similarity=0.259 Sum_probs=23.6
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.++.+.|.||.|+|||+|+..+.+..
T Consensus 18 ~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 18 GPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp --SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred hcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 457899999999999999999999987
No 160
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.55 E-value=0.0029 Score=56.04 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=29.1
Q ss_pred eeeeecccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 50 RAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 50 raID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.+..++....+..++|.|++|+|||+|+..++++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444443356678899999999999999999999874
No 161
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.54 E-value=0.00079 Score=61.13 Aligned_cols=61 Identities=41% Similarity=0.684 Sum_probs=50.5
Q ss_pred EEecCCCcccccc--------ccccCCCCCCCCcccccccchhhhcccc--ccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAA--------REEVPGRRGFPGYMYTNLATIYERAGRV--EGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~--------~~~la~~r~~Pai~~~~~~s~~~r~g~~--~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++...- -++++.+++||+...+.++++|||+|++ ..+.||+|.++++.+++||-
T Consensus 107 Vlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~l~~l~ERag~~~~~~~~GSIT~~~~v~~~~~d~ 177 (215)
T PF00006_consen 107 VLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSLFSDLASLYERAGKVNSEEGGGSITAIPTVLVPGDDI 177 (215)
T ss_dssp EEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHHHHHHHTTSEEBSTTTTSEEEEEEEEEEESTTBT
T ss_pred eeehhhhhHHHHHHHHhhhcccccccccccccchhccchhhHHHHhhccccccCCceeeeecccccccccc
Confidence 3334567665432 2488999999999999999999999999 67899999999999999884
No 162
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.54 E-value=0.023 Score=51.60 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=36.2
Q ss_pred ccccCCCccccCCCCc-cccCCCceeeeec-ccccCCc-eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 27 NFVSQEGERSFTPRDL-IGDSSGKRAIDVM-NSIARGQ-KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 27 ~~~~~~p~~r~~p~e~-l~~~TGiraID~l-~pigrGQ-r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+|+.++||...+.... .....--+++..+ ..+-+++ .++|.|++|+|||+|+..+++...
T Consensus 6 ~~l~~~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 6 FGFTTKPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCCCCCCCCCCHHHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 5677778775444332 2000001233322 2233444 688999999999999999988763
No 163
>PRK08118 topology modulation protein; Reviewed
Probab=96.53 E-value=0.0024 Score=55.27 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=24.5
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhccc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAGLV 88 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~~~ 88 (293)
+|+.|+|++|+|||||+..|++..+..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 689999999999999999999987643
No 164
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.53 E-value=0.0012 Score=62.23 Aligned_cols=61 Identities=26% Similarity=0.466 Sum_probs=50.9
Q ss_pred EEecCCCcccccc--------ccccCCCCCCCCcccccccchhhhcccccc--CCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAA--------REEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~--------~~~la~~r~~Pai~~~~~~s~~~r~g~~~~--~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++...- -++.|.+++||...++.+...+||+|++.. ..||+|.+++|.+++||-
T Consensus 163 Vlvl~DslTr~A~A~rEisl~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~~~~GSIT~i~~V~~~~dD~ 233 (274)
T cd01132 163 ALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQAGDV 233 (274)
T ss_pred EEEEEcChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHhHHHHHHhhhccCCCCCcceEEEEEEEcCCCCc
Confidence 4555678887633 249999999999999999999999999863 479999999999999984
No 165
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.0021 Score=59.51 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=26.5
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.|.+|++.+|+|++|+|||||+..|+--
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 57999999999999999999999988753
No 166
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.49 E-value=0.0059 Score=54.62 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=24.4
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..+..+.|.|++|+|||+|+..|+++..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999999873
No 167
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.47 E-value=0.016 Score=55.18 Aligned_cols=102 Identities=8% Similarity=0.153 Sum_probs=55.0
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccc---hhHHHHHHhhhhCCccccEEE
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNM---ETARFFKQDFEENGSMENVCL 135 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~---e~~~~~~~~l~~~g~~~~tvv 135 (293)
++++.+.|.|++|+|||+++..+.++..... +........+|+-|-+-. +....+.+.+...|. .
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~-------~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~---~-- 105 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAA-------EDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGE---E-- 105 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHh-------hccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCC---C--
Confidence 4557899999999999999999988763210 000012456666654432 233344444421110 0
Q ss_pred EeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHH
Q psy5595 136 FLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYA 180 (293)
Q Consensus 136 v~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a 180 (293)
......+ ..+ .--.+-+++... ++.++|++|++-.+.
T Consensus 106 -~~~~~~~-~~~-----~~~~l~~~l~~~-~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 106 -VPTTGLS-TSE-----VFRRLYKELNER-GDSLIIVLDEIDYLV 142 (365)
T ss_pred -CCCCCCC-HHH-----HHHHHHHHHHhc-CCeEEEEECchhhhc
Confidence 0001111 111 111223444444 788999999998875
No 168
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.43 E-value=0.0073 Score=60.26 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=25.9
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.++.++.++||+|+|||+|+.+|+.++
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~~ 233 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPYV 233 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHHH
Confidence 4689999999999999999999999884
No 169
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.42 E-value=0.0028 Score=50.61 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=22.1
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+++|.|+||+||||++.+++.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 579999999999999999999875
No 170
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.38 E-value=0.0032 Score=55.28 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=30.3
Q ss_pred eeeeecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 50 RAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 50 raID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.+++-.+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 14 ~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344445689999999999999999999999988654
No 171
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.35 E-value=0.0093 Score=59.46 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.5
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..+.|.|++|+|||||+..|++...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~ 155 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 172
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.32 E-value=0.019 Score=56.61 Aligned_cols=28 Identities=14% Similarity=0.238 Sum_probs=24.0
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++...++|.|++|+|||+|+..|++...
T Consensus 34 ~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 34 GRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445789999999999999999998863
No 173
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.32 E-value=0.034 Score=45.39 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.5
Q ss_pred eeEecCCCCChhHHHHHHHHHhc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.+.|+||+||||++.++++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 57899999999999999998763
No 174
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.32 E-value=0.014 Score=54.02 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=21.5
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
|+.|+|++|+|||+|+..|.....
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc
Confidence 789999999999999999987653
No 175
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.31 E-value=0.039 Score=52.91 Aligned_cols=28 Identities=7% Similarity=0.145 Sum_probs=25.7
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+|+.++++|++|+||||++..++....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5799999999999999999999998764
No 176
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.31 E-value=0.0034 Score=54.59 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999987643
No 177
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.0034 Score=56.06 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=27.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+||.++|+|++|+|||||+..|+...
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 578899999999999999999999998654
No 178
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.0034 Score=54.26 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998543
No 179
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.30 E-value=0.014 Score=55.56 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=23.4
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
...++|.||+|+|||+|+..+++..+
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhC
Confidence 35789999999999999999999875
No 180
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.28 E-value=0.0016 Score=61.21 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=49.4
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++-..-. ++.|.+++||...++++..+|||+|+ .+.||+|+++++.+++||-
T Consensus 165 Vl~~~Dsltr~a~A~reis~~~ge~p~~~gyp~~~f~~~~~l~ERag~--~~~GSiT~~~~v~~~~dD~ 231 (274)
T cd01133 165 VLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITS--TKKGSITSVQAVYVPADDL 231 (274)
T ss_pred EEEEEeChhHHHHHHHHHHHHcCCCCCCcCcCccHHHHHHHHHHHhcC--CCCcccceEEEEEecCCCC
Confidence 44455777765433 48899999999999999999999997 4689999999999999884
No 181
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.27 E-value=0.0038 Score=55.36 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 568899999999999999999999998653
No 182
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0039 Score=55.04 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=27.5
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999999998653
No 183
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.015 Score=57.67 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=36.1
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
.||+.=+|=.+= +.+|+-++|=|+||.|||||+.|++.+.++
T Consensus 76 ~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~ 119 (456)
T COG1066 76 STGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK 119 (456)
T ss_pred cCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHh
Confidence 688887776653 478999999999999999999999998864
No 184
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.26 E-value=0.0021 Score=57.91 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=53.7
Q ss_pred CceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHHHHhcccccCC
Q psy5595 13 DDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPG 92 (293)
Q Consensus 13 ~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~ 92 (293)
.++|+||...|.+...++. |.|...+-. +- .-+++.+||.++|+|..|+|||||+.||+--..-+ +|
T Consensus 2 ~~LLeV~nLsKtF~~~~~l--f~r~~~~AV-------~~--vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT--sG 68 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGL--FRRQTVEAV-------KP--VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SG 68 (267)
T ss_pred cchhhhhhhhhhhhhhhhh--hhhhhhhcc-------cc--eEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC--Cc
Confidence 3688999888888887776 455433321 11 13679999999999999999999999998766543 35
Q ss_pred ccccCCC
Q psy5595 93 KSVLDDS 99 (293)
Q Consensus 93 ~~~~~~~ 99 (293)
...+|.+
T Consensus 69 ~il~n~~ 75 (267)
T COG4167 69 EILINDH 75 (267)
T ss_pred eEEECCc
Confidence 5555553
No 185
>PRK07261 topology modulation protein; Provisional
Probab=96.26 E-value=0.0041 Score=53.89 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.8
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+|++|+|++|+|||||+.+|++..+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988764
No 186
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.26 E-value=0.0038 Score=50.86 Aligned_cols=27 Identities=15% Similarity=0.227 Sum_probs=24.8
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQIC 82 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~ 82 (293)
+.+..|+.++|.|++|+|||||+..+.
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 467889999999999999999999886
No 187
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.24 E-value=0.0037 Score=55.63 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCCceeeee-cccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 46 SSGKRAIDV-MNSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 46 ~TGiraID~-l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++-+.+|- -+.+-+|.+++|.||+|+|||+|+.++|.-..
T Consensus 13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 345555543 35678999999999999999999999988653
No 188
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.24 E-value=0.0041 Score=54.89 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999998653
No 189
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.23 E-value=0.004 Score=55.30 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 668899999999999999999999998653
No 190
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.23 E-value=0.0042 Score=55.50 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=27.3
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 568899999999999999999999998754
No 191
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.22 E-value=0.002 Score=64.52 Aligned_cols=60 Identities=25% Similarity=0.306 Sum_probs=51.1
Q ss_pred EEEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 229 ILTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
=|++--||++-..-. ++.|.+++||...++.+...|||+|+. ..||+|.+++|.+++||-
T Consensus 233 ~VLl~~DslTR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~~--~~GSIT~i~~V~~~~dD~ 300 (449)
T TIGR03305 233 DVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATT--SDGAITSIQAVYVPADDF 300 (449)
T ss_pred ceEEEecChHHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcCC--CCcCeeEEEEEEccCCCC
Confidence 355567788866443 499999999999999999999999985 589999999999999984
No 192
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=96.21 E-value=0.0022 Score=64.20 Aligned_cols=61 Identities=26% Similarity=0.381 Sum_probs=50.6
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++-..-. ++.|.+++||...++.+...|||+|+...+.||+|.+++|.+++||-
T Consensus 267 Vll~~DslTr~A~A~rEisl~~ge~P~~~gypp~~f~~l~~l~ERag~~~~~~GSIT~i~tVlv~~dD~ 335 (455)
T PRK07960 267 VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQ 335 (455)
T ss_pred eEEEecchhHHHHHHHHHHHhcCCCCccccCCcchhhhhhHHHHHHhcCCCCCeeeeeEEEEEEcCCCC
Confidence 44445677654322 48999999999999999999999999876789999999999998873
No 193
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.20 E-value=0.0041 Score=54.84 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999998643
No 194
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.20 E-value=0.0041 Score=54.82 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999998643
No 195
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.19 E-value=0.0041 Score=55.20 Aligned_cols=29 Identities=10% Similarity=0.263 Sum_probs=26.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+..+|+|++|+|||||+..|+.-
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999988754
No 196
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0042 Score=55.70 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=27.3
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+..+|+|++|+|||||+..|+...
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 668899999999999999999999998654
No 197
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.17 E-value=0.0042 Score=55.95 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 23 LNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 568899999999999999999999997643
No 198
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.16 E-value=0.0046 Score=54.82 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 24 FHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998653
No 199
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.16 E-value=0.0018 Score=64.17 Aligned_cols=60 Identities=28% Similarity=0.429 Sum_probs=51.6
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDV 289 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~ 289 (293)
|++--||++-..-. ++.|.+++||+..++.+...|||+|++....||+|.+++|.+++||
T Consensus 229 Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~GSIT~~~tv~~~~dd 296 (411)
T TIGR03496 229 VLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEEGKGSITAFYTVLVEGDD 296 (411)
T ss_pred EEEEEeChHHHHHHHHHHHHhcCCCCCccCcCHHHHHHhHHHHHHhcccCCCCcceeEEEEEEccCCC
Confidence 55556787765332 4889999999999999999999999998789999999999999887
No 200
>KOG2028|consensus
Probab=96.15 E-value=0.015 Score=57.30 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=21.0
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-+.+.||||+|||+|+.-|+..+.
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk 187 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSK 187 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcC
Confidence 467899999999999999988774
No 201
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.15 E-value=0.0044 Score=55.49 Aligned_cols=31 Identities=6% Similarity=0.179 Sum_probs=27.4
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+..+|+|++|+|||||+..|+.-.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999999988643
No 202
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.15 E-value=0.0045 Score=54.32 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=26.7
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 19 LTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999999998643
No 203
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.0047 Score=55.78 Aligned_cols=29 Identities=7% Similarity=0.190 Sum_probs=26.6
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999999854
No 204
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.14 E-value=0.0042 Score=50.67 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEEccCCCccccceeeecccc
Confidence 457899999999999999999999887765
No 205
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.13 E-value=0.015 Score=54.54 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=23.3
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.|-.++|.|+||+|||+++..+++...
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999998888774
No 206
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.13 E-value=0.005 Score=54.16 Aligned_cols=30 Identities=10% Similarity=0.116 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|.|++|+|||||+..|+.-.
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999987654
No 207
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.13 E-value=0.0041 Score=55.79 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=26.5
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 56889999999999999999999999764
No 208
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=96.13 E-value=0.025 Score=56.04 Aligned_cols=154 Identities=12% Similarity=0.043 Sum_probs=82.3
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEE
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVC 134 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tv 134 (293)
|+....||..+|=|.||+|||+++.++.+...- ..-+.|+.-=--.+.+..+. ...++.++++-
T Consensus 4 FF~~~~G~TLLIKG~PGTGKTtfaLelL~~l~~--------------~~~v~YISTRVd~d~vy~~y--~~~~~~i~~~~ 67 (484)
T PF07088_consen 4 FFTQEPGQTLLIKGEPGTGKTTFALELLNSLKD--------------HGNVMYISTRVDQDTVYEMY--PWIEESIDPTN 67 (484)
T ss_pred hhcCCCCcEEEEecCCCCCceeeehhhHHHHhc--------------cCCeEEEEeccCHHHHHHhh--hhhccccChhh
Confidence 567789999999999999999999988877641 12234443322233333222 23334455555
Q ss_pred EEeeCCCCch-------hhhhchHHHHHHHHHHHHHhcCCceEEEecc----hhHHHHHHHHHhhhcCCCCCCCCCCCch
Q psy5595 135 LFLNLANDPT-------IERIITPRLALTTAEFLAYQCEKHVLVILTD----MSSYAEALREVSAAREEVPGRRGFPGYM 203 (293)
Q Consensus 135 vv~stsd~~~-------~~r~~a~~~a~tiAEyfr~~~G~~VLli~Ds----ltr~a~A~reisl~~ge~p~~~gyp~~l 203 (293)
++-.+.|.-- ..+...+......-+.+ +..+++.+|++|| +...|.- -+. |.++
T Consensus 68 vlDatQd~~~~~~~~~vp~~~l~~ds~~~f~~~i-~~~~k~~iI~~DSWdaiieyla~~-------~~~-------~ed~ 132 (484)
T PF07088_consen 68 VLDATQDPFELPLDKDVPFERLDIDSFRDFVDKI-NEAGKKPIIAFDSWDAIIEYLAEE-------HDE-------PEDI 132 (484)
T ss_pred hhhhccchhhccccccCcccccCHHHHHHHHHHh-hhcccCcEEEEecHHHHHHHhhhh-------hcC-------cHHH
Confidence 5544444211 11111222222222333 2238999999999 4444431 122 3444
Q ss_pred hhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccccccc
Q psy5595 204 YTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSAARE 244 (293)
Q Consensus 204 f~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~~~ 244 (293)
-+..-.|.|=|.. .-+=.+.+.+....+--|++.|+
T Consensus 133 e~l~~dLv~lard-----~g~~LIlVsEsa~~~~LdYivDG 168 (484)
T PF07088_consen 133 ETLTNDLVELARD-----MGINLILVSESAENEPLDYIVDG 168 (484)
T ss_pred HHHHHHHHHHHhh-----cCceEEEEEecCCCCcchheeee
Confidence 4444555554443 22334444444444455888886
No 209
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.0047 Score=55.53 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 568899999999999999999999998643
No 210
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.0049 Score=54.88 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=27.5
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.=+.+.+|+..+|+|++|+|||||+..|+..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3367889999999999999999999999864
No 211
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.0049 Score=55.64 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=27.3
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 23 LDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999998754
No 212
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.0052 Score=55.24 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=27.5
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999999998643
No 213
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.0057 Score=54.01 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=29.6
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.+.+|++.+|+|++|+|||||+..|+.-.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 666889999999999999999999999998654
No 214
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.08 E-value=0.0053 Score=54.03 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999999999998654
No 215
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.06 E-value=0.005 Score=54.78 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 26 FSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999999998654
No 216
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.06 E-value=0.0026 Score=59.95 Aligned_cols=62 Identities=73% Similarity=1.080 Sum_probs=52.5
Q ss_pred EEEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 229 ILTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
=|++--||++-..-. ++.|.+++||...++.+...+||+|++..+.||+|.+++|.+++||-
T Consensus 167 ~VLl~~D~ltr~A~A~rEisl~~gepP~~~gyp~~vf~~~~~l~ERag~~~~~~GSITa~~~V~~~~dD~ 236 (276)
T cd01135 167 HVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDI 236 (276)
T ss_pred eEEEEEcChhHHHHHHHHHHhccCCCCCccCcCccHHHHhhHHheecccCCCCCeeEEEEEEEEccCCCc
Confidence 355556788765433 48899999999999999999999999876689999999999999984
No 217
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.06 E-value=0.0053 Score=54.38 Aligned_cols=30 Identities=7% Similarity=0.121 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|.|++|+|||||+..|+.-.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 567899999999999999999999998643
No 218
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.06 E-value=0.0055 Score=55.22 Aligned_cols=29 Identities=10% Similarity=0.280 Sum_probs=26.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999999854
No 219
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.06 E-value=0.0059 Score=52.70 Aligned_cols=32 Identities=13% Similarity=0.294 Sum_probs=28.1
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.+.+|+..+|.|++|+|||||+..|+...
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 21 LSLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34567799999999999999999999998765
No 220
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.05 E-value=0.0054 Score=54.23 Aligned_cols=30 Identities=10% Similarity=0.237 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998643
No 221
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.05 E-value=0.0055 Score=54.27 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+..+|+|++|+|||||+..|+...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999998754
No 222
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.05 E-value=0.0025 Score=63.64 Aligned_cols=61 Identities=26% Similarity=0.368 Sum_probs=51.5
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||+|-..-. ++.|.+++||...++.+..+|||+|+...+.||+|.+++|.+++||-
T Consensus 254 VLl~~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~L~ERAg~~~~~~GSITai~tVl~~gdD~ 322 (444)
T PRK08972 254 VLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYTVLTEGDDL 322 (444)
T ss_pred EEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHHhcCCCCCCceeeeEEEEEEeCCCC
Confidence 55556787765332 48899999999999999999999999877789999999999998873
No 223
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0053 Score=55.80 Aligned_cols=28 Identities=7% Similarity=0.158 Sum_probs=25.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 26 LDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999999999999975
No 224
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.03 E-value=0.0054 Score=55.68 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 24 LEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 567899999999999999999999998653
No 225
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.03 E-value=0.0057 Score=54.01 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999999998754
No 226
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.03 E-value=0.0054 Score=54.86 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=26.6
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|++++|+|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999999864
No 227
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.006 Score=54.67 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=27.3
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3467899999999999999999999997654
No 228
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.01 E-value=0.0055 Score=55.12 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=26.6
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.|.+|+.++|+|++|+|||||+..|+..
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 21 LTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999999864
No 229
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.00 E-value=0.0064 Score=52.06 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999997654
No 230
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.00 E-value=0.0059 Score=53.94 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=26.3
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999988764
No 231
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.00 E-value=0.0059 Score=54.16 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 568899999999999999999999998653
No 232
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.00 E-value=0.0059 Score=53.60 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.+.+|++++|.|++|+|||||+..|....+
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il~~~G 46 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLYASG 46 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcCC
Confidence 5789999999999999999999998864333
No 233
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.00 E-value=0.0061 Score=55.77 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=26.5
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 33 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 33 LSIPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 55789999999999999999999999864
No 234
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.99 E-value=0.024 Score=55.76 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=38.0
Q ss_pred CCCceeeeecc-cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 46 SSGKRAIDVMN-SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 46 ~TGiraID~l~-pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.||+..+|-++ -+.+|+=+.|-|.||+|||+++.+|+.+++
T Consensus 178 ~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a 219 (421)
T TIGR03600 178 STGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVA 219 (421)
T ss_pred eCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999988 588999999999999999999999998774
No 235
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.99 E-value=0.03 Score=55.23 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=37.7
Q ss_pred CCCceeeeeccc-ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 46 SSGKRAIDVMNS-IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 46 ~TGiraID~l~p-igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.||+..+|-++- +.+|+=+.|-|.||+|||+++.+++.+.+
T Consensus 179 ~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a 220 (434)
T TIGR00665 179 PTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAA 220 (434)
T ss_pred cCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHH
Confidence 899999999874 88999999999999999999999998865
No 236
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.98 E-value=0.0058 Score=55.57 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 25 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 25 LKIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 668899999999999999999999988653
No 237
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.98 E-value=0.0075 Score=52.83 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=28.5
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.+.+|++++|.|++|+|||||+..|+...
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 333568899999999999999999999998754
No 238
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.98 E-value=0.0055 Score=54.19 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=26.8
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 468899999999999999999999987653
No 239
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.97 E-value=0.0061 Score=53.62 Aligned_cols=31 Identities=10% Similarity=0.254 Sum_probs=28.0
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 3678899999999999999999999998764
No 240
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.97 E-value=0.0059 Score=54.33 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998653
No 241
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.97 E-value=0.0061 Score=54.46 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 568899999999999999999999998754
No 242
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.006 Score=55.36 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=27.5
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3446688999999999999999999999985
No 243
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.96 E-value=0.0065 Score=54.85 Aligned_cols=30 Identities=7% Similarity=0.146 Sum_probs=27.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999999999999999999998754
No 244
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=95.96 E-value=0.0035 Score=63.54 Aligned_cols=61 Identities=28% Similarity=0.446 Sum_probs=51.1
Q ss_pred EEEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 229 ILTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
=|++--||+|...-. ++.|.+++||...++.+...+||+|++.. .||+|.+|+|.+++||-
T Consensus 234 dVLlv~DdLTr~A~A~REisLllgepPgregYPg~vF~~~srLlERAg~~~g-~GSITalpiV~t~~dDi 302 (507)
T PRK07165 234 DVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFKN-RKTITALPILQTVDNDI 302 (507)
T ss_pred ceEEEEcChHHHHHHHHHHHhhccCCCCccCCCchHHHHhHHHHHhccCCCC-CCceEEEEEEECCCCCC
Confidence 355556788865333 48899999999999999999999999965 59999999999999984
No 245
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.96 E-value=0.0058 Score=59.47 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=30.2
Q ss_pred ceeee-ecccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 49 KRAID-VMNSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 49 iraID-~l~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
..++| .=+.|.+|.-..++||+|||||||+.+||-
T Consensus 18 ~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45554 556899999999999999999999999986
No 246
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.95 E-value=0.0063 Score=55.62 Aligned_cols=31 Identities=10% Similarity=0.182 Sum_probs=27.6
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 26 SFDLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999999998754
No 247
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.95 E-value=0.0063 Score=54.70 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=27.5
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 22 SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3567899999999999999999999998654
No 248
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.95 E-value=0.0065 Score=55.78 Aligned_cols=30 Identities=10% Similarity=0.228 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 22 LTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998653
No 249
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.94 E-value=0.079 Score=49.60 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=25.6
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-.+++.+.++|++|+||||++..++....
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45678999999999999999999998774
No 250
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.94 E-value=0.0063 Score=54.70 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=27.7
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+..+|.|++|+|||||+..|+...
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999999999998754
No 251
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.94 E-value=0.014 Score=55.54 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.6
Q ss_pred eeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
-+++|||||+|||||+.-||+..+.
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgv 78 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGV 78 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcC
Confidence 4789999999999999999998864
No 252
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.93 E-value=0.0064 Score=54.10 Aligned_cols=29 Identities=7% Similarity=0.147 Sum_probs=26.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|++++|+|++|+|||||+..|+.-
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 55889999999999999999999999864
No 253
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.93 E-value=0.0067 Score=54.72 Aligned_cols=29 Identities=17% Similarity=0.278 Sum_probs=26.6
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 22 LNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999999864
No 254
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.93 E-value=0.0067 Score=54.96 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=27.5
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 23 SVKFEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3668899999999999999999999998653
No 255
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.92 E-value=0.0065 Score=55.05 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=26.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 24 LEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56889999999999999999999998864
No 256
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.92 E-value=0.0068 Score=53.79 Aligned_cols=30 Identities=7% Similarity=0.164 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998654
No 257
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.92 E-value=0.0066 Score=54.60 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=27.9
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 23 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 23 SLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3578899999999999999999999998764
No 258
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.92 E-value=0.0066 Score=53.97 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+..+|+|++|+|||||+..|+...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 568899999999999999999999998654
No 259
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0074 Score=51.95 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=26.8
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999999997654
No 260
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0073 Score=54.61 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=26.6
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+..+|+|++|+|||||+..|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 22 LEIAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56889999999999999999999999764
No 261
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.90 E-value=0.0071 Score=51.91 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=27.3
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|++.+|.|++|+|||||+..|+...
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999998764
No 262
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.89 E-value=0.007 Score=52.51 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998754
No 263
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.89 E-value=0.0073 Score=54.30 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 30 FSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999998643
No 264
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.88 E-value=0.0073 Score=53.19 Aligned_cols=30 Identities=10% Similarity=0.111 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 468899999999999999999999998643
No 265
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.88 E-value=0.007 Score=53.36 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=27.5
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+-+|++++|+|++|+|||||+..|+...
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 20 SFTLAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999999998754
No 266
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.87 E-value=0.0081 Score=51.68 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 567899999999999999999999998754
No 267
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.87 E-value=0.0072 Score=54.29 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=28.9
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455778999999999999999999999987653
No 268
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.86 E-value=0.0067 Score=55.81 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 32 LTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 567899999999999999999999998653
No 269
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.86 E-value=0.0075 Score=54.86 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 21 FSVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998643
No 270
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.86 E-value=0.0073 Score=54.16 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=26.8
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 567899999999999999999999988643
No 271
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.86 E-value=0.0039 Score=62.62 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=50.0
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++-..-. ++.|.+++||...++.+...|||+|+. ..||+|.+++|.+++||-
T Consensus 239 VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~--~~GSITai~tVl~~gdD~ 305 (461)
T TIGR01039 239 VLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITST--KTGSITSVQAVYVPADDL 305 (461)
T ss_pred eEEEecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCC--CCCceeEEEEEEccCCCC
Confidence 45556788765433 489999999999999999999999975 589999999999999984
No 272
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.85 E-value=0.0073 Score=54.90 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=26.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 27 LEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999999999999854
No 273
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.85 E-value=0.026 Score=55.65 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=21.9
Q ss_pred eeEecCCCCChhHHHHHHHHHhcc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
+||.||||||||.++..|++..+.
T Consensus 151 llL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCC
Confidence 688999999999999999999863
No 274
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.84 E-value=0.016 Score=54.43 Aligned_cols=61 Identities=20% Similarity=0.148 Sum_probs=43.8
Q ss_pred ceeEEEecceeecccccCCCccccCCCCccccCCCceeee-ecccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 14 DLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAID-VMNSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 14 ~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID-~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+++++-..+.+.-+-. +.+.. -++++| .=+.|.+|+..+|+|.+|+|||||...|.+-..
T Consensus 3 ~ll~v~~l~k~f~~~~~---~~~~~---------~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG---FGKKR---------YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred ceEEEeccEEEEecccc---cCccc---------ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 46777776666543221 11111 157776 568999999999999999999999999988654
No 275
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.84 E-value=0.0077 Score=52.18 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=26.7
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|.|++|+|||||+..|+...
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999999997654
No 276
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.84 E-value=0.004 Score=62.42 Aligned_cols=61 Identities=28% Similarity=0.415 Sum_probs=51.2
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++-..-. ++.|.+++||...++.+...|||+|+.....||+|.+++|.+++||-
T Consensus 260 VLl~~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~l~ERag~~~~~~GSITai~tVl~~gdD~ 328 (451)
T PRK05688 260 VLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSITAFYTVLSEGDDQ 328 (451)
T ss_pred EEEEecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHHHHHHhcCCCCCCceeeEEEEEEecCCCC
Confidence 45556787765333 48999999999999999999999998865689999999999998883
No 277
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.83 E-value=0.0079 Score=53.77 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=27.7
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+..+|.|++|+|||||+..|+...
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3678999999999999999999999998654
No 278
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.022 Score=55.95 Aligned_cols=40 Identities=13% Similarity=0.304 Sum_probs=32.1
Q ss_pred CCCceeeeec-ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 46 SSGKRAIDVM-NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 46 ~TGiraID~l-~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
..-+.+++.. ..+.+|+.++++||+|+||||++..|+...
T Consensus 121 ~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 121 AANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred HhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445556555 346789999999999999999999999875
No 279
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.82 E-value=0.0078 Score=55.68 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=28.4
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334578899999999999999999999998653
No 280
>PRK14527 adenylate kinase; Provisional
Probab=95.82 E-value=0.033 Score=48.62 Aligned_cols=38 Identities=16% Similarity=0.358 Sum_probs=31.0
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhcccccCCcccc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVL 96 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~ 96 (293)
-+|+.++|+|+||+||||++..|+..-+..++..+.++
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~ 41 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDIL 41 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHH
Confidence 47899999999999999999999988776665544444
No 281
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.81 E-value=0.0081 Score=54.49 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=26.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 24 MKIFKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred EeecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56789999999999999999999999853
No 282
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.81 E-value=0.008 Score=54.21 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 23 LYVDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999998643
No 283
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.80 E-value=0.008 Score=55.49 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=27.8
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 27 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999998654
No 284
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.80 E-value=0.0078 Score=55.60 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=26.9
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.+|++++|+|++|+|||||+..|+....
T Consensus 22 ~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 22 VPREGQVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 388999999999999999999999887653
No 285
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.80 E-value=0.008 Score=53.57 Aligned_cols=30 Identities=7% Similarity=0.204 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|.|++|+|||||+..|+.-.
T Consensus 29 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 29 LTVNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999999999999999999997653
No 286
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.80 E-value=0.008 Score=56.57 Aligned_cols=31 Identities=6% Similarity=0.090 Sum_probs=27.6
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+..+|+|++|+|||||+..|+.-.
T Consensus 13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999999998643
No 287
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.79 E-value=0.0076 Score=54.78 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|++++|+|++|+|||||+..|+...
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999988654
No 288
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.79 E-value=0.008 Score=53.60 Aligned_cols=30 Identities=7% Similarity=0.127 Sum_probs=26.8
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999999988643
No 289
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.79 E-value=0.0081 Score=54.92 Aligned_cols=30 Identities=10% Similarity=0.137 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 568899999999999999999999998643
No 290
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.79 E-value=0.0083 Score=55.40 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 33 l~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999998654
No 291
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.0084 Score=53.77 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=27.5
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4567899999999999999999999998654
No 292
>PRK10908 cell division protein FtsE; Provisional
Probab=95.78 E-value=0.0086 Score=53.36 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998654
No 293
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.77 E-value=0.0081 Score=54.30 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=26.5
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.|.+|++++|+|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999999999864
No 294
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.0084 Score=54.39 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=26.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 26 LDFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 55789999999999999999999999753
No 295
>PRK14531 adenylate kinase; Provisional
Probab=95.77 E-value=0.0087 Score=52.10 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=23.8
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
+|+.|+|+||+||||++..|+..-+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~ 28 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGL 28 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 68999999999999999999988754
No 296
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.0083 Score=54.63 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 28 IKILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 568899999999999999999999998653
No 297
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.76 E-value=0.0084 Score=54.01 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998654
No 298
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.76 E-value=0.0089 Score=54.24 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=26.9
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=+.|.+|+..+|+|++|+|||||+..|+..
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 23 NLDIPKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 356889999999999999999999999854
No 299
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.76 E-value=0.0084 Score=55.20 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=26.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 42 MDIEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 56789999999999999999999999863
No 300
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=95.75 E-value=0.011 Score=57.20 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=30.1
Q ss_pred eeecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 52 IDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 52 ID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+|.=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 477788999999999999999999999999864
No 301
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.75 E-value=0.0089 Score=55.14 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=27.6
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 29 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 29 SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999999999998753
No 302
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.75 E-value=0.0041 Score=62.50 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=49.6
Q ss_pred EEecCCCcccccc--------ccccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAA--------REEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~--------~~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||+|-..- -++.|.+++||...++.+...|||+|+. ..||+|.+++|.+++||-
T Consensus 240 VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~--~~GSITai~tVl~~gdD~ 306 (463)
T PRK09280 240 VLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST--KKGSITSVQAVYVPADDL 306 (463)
T ss_pred eEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHhcCC--CCCceeEEEEEECcCCCC
Confidence 4555678875532 3589999999999999999999999984 589999999999999984
No 303
>PHA00729 NTP-binding motif containing protein
Probab=95.74 E-value=0.0042 Score=56.95 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=27.2
Q ss_pred eeeecccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 51 AIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 51 aID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++.|...+. .+++|+|+||+|||||+..|++..+
T Consensus 8 ~~~~l~~~~f-~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 8 IVSAYNNNGF-VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHhcCCe-EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444444444 4899999999999999999999863
No 304
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.74 E-value=0.0089 Score=53.35 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+..+|+|++|+|||||+..|+...
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 567899999999999999999999998654
No 305
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.74 E-value=0.0085 Score=54.98 Aligned_cols=30 Identities=10% Similarity=0.275 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998754
No 306
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.74 E-value=0.037 Score=49.33 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=26.4
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhcccccCC
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAGLVKMPG 92 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~ 92 (293)
.|+.|+|+||+||||++..|+..-+..++..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 4799999999999999999999887655543
No 307
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.74 E-value=0.0086 Score=55.47 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999998653
No 308
>PRK06217 hypothetical protein; Validated
Probab=95.73 E-value=0.009 Score=51.95 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=29.6
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhcccccCCccccCC
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD 98 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~ 98 (293)
+||.|+|.+|+|||||+.+|+...+...+..|.+...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~ 38 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWL 38 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeec
Confidence 5799999999999999999999887655555554443
No 309
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.73 E-value=0.0087 Score=52.79 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=27.5
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+..+|.|++|+|||||+..|+...
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred eEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999999998754
No 310
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.73 E-value=0.0092 Score=54.79 Aligned_cols=30 Identities=7% Similarity=0.201 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998654
No 311
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.73 E-value=0.0086 Score=52.63 Aligned_cols=30 Identities=10% Similarity=0.237 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|++.+|.|++|+|||||+..|+.-.
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999997643
No 312
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.72 E-value=0.009 Score=54.18 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 22 LDIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 568899999999999999999999998643
No 313
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.0093 Score=51.22 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 568899999999999999999999998764
No 314
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.72 E-value=0.0088 Score=52.74 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=26.9
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999999998764
No 315
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.71 E-value=0.0095 Score=54.95 Aligned_cols=30 Identities=7% Similarity=0.149 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 41 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 41 MQFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 678899999999999999999999998653
No 316
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.71 E-value=0.0083 Score=55.20 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|++++|+|++|+|||||+..|+...
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 568899999999999999999999997653
No 317
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.71 E-value=0.0093 Score=54.20 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=26.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 24 MEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 5688999999999999999999999975
No 318
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.71 E-value=0.0089 Score=54.39 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=26.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.|.+|+.++|+|++|+|||||+..|+.-
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 25 MDFPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999999999999864
No 319
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.71 E-value=0.0091 Score=53.54 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=26.2
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.+.+|+.++|+|++|+|||||+..|+...
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999999998754
No 320
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.70 E-value=0.0089 Score=55.76 Aligned_cols=30 Identities=3% Similarity=0.029 Sum_probs=27.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 32 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 578899999999999999999999998754
No 321
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=95.70 E-value=0.0089 Score=56.28 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 25 l~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 25 FTIARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998643
No 322
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.70 E-value=0.01 Score=52.10 Aligned_cols=31 Identities=6% Similarity=0.197 Sum_probs=27.2
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999999987653
No 323
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.69 E-value=0.0092 Score=53.98 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 42 ~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 42 FTIEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 567899999999999999999999998654
No 324
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.68 E-value=0.0087 Score=55.27 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=26.8
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 568899999999999999999999987643
No 325
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.68 E-value=0.0096 Score=55.04 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999998754
No 326
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.68 E-value=0.0093 Score=54.66 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=26.5
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.|.+|+.++|+|++|+|||||+..|+..
T Consensus 34 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56889999999999999999999999854
No 327
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=95.68 E-value=0.0052 Score=62.43 Aligned_cols=61 Identities=26% Similarity=0.475 Sum_probs=51.5
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhcccccc--CCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~--~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++...-. ++.|.+++||...++.+...+||+|++.. .-||+|.+++|.+++||-
T Consensus 256 VLli~DdlTr~A~A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~~~~~~GSITal~~V~~~~dD~ 326 (502)
T PRK09281 256 ALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQAGDV 326 (502)
T ss_pred EEEEecCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhccCCCCCccEEEEEEEECCCCCC
Confidence 56667888866433 48999999999999999999999999864 479999999999999983
No 328
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.0087 Score=52.93 Aligned_cols=30 Identities=7% Similarity=0.259 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 567899999999999999999999988754
No 329
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.68 E-value=0.0092 Score=54.23 Aligned_cols=30 Identities=3% Similarity=0.067 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 26 LEVREQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred eEEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 568899999999999999999999998653
No 330
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.67 E-value=0.0045 Score=61.80 Aligned_cols=60 Identities=25% Similarity=0.408 Sum_probs=49.6
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++-..-. ++.|.+++||...++.+...|||+|+... .||+|.+++|.+++||-
T Consensus 247 Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~-~GSIT~~~tVl~~~dD~ 314 (434)
T PRK07196 247 VLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSG-NGTMTAIYTVLAEGDDQ 314 (434)
T ss_pred EEEeecchhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhhcCCC-CEEeeeeeEEEccCCCC
Confidence 44446777755333 48899999999999999999999999843 59999999999999983
No 331
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.67 E-value=0.0043 Score=59.74 Aligned_cols=58 Identities=28% Similarity=0.436 Sum_probs=48.2
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDV 289 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~ 289 (293)
|++--||++-..-. ++.|.+++||...++.+..+|||+|+.. .||+|.++++.++++|
T Consensus 161 Vll~~Dsltr~a~A~rei~~~~ge~p~~~gyp~~~~~~~~~l~ERag~~~--~GSIT~i~tv~~~gdd 226 (326)
T cd01136 161 VLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSD--KGSITAFYTVLVEGDD 226 (326)
T ss_pred eEEEeccchHHHHHHHHHHHhcCCCCCcCCcChHHHHHhHHHHHHhcCCC--CCCeeeeeeeeecCCC
Confidence 45556777754322 4889999999999999999999999975 4999999999999877
No 332
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=95.66 E-value=0.0092 Score=54.92 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=28.0
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 30 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 30 VSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33678999999999999999999999998753
No 333
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.66 E-value=0.0098 Score=52.44 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 567899999999999999999999998653
No 334
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.66 E-value=0.01 Score=53.99 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=26.7
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+..+|+|++|+|||||+..|+..
T Consensus 26 ~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 26 LDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 56889999999999999999999999865
No 335
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.65 E-value=0.0097 Score=57.65 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=28.5
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 21 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 52 (353)
T PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE 52 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44678899999999999999999999999854
No 336
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.65 E-value=0.0097 Score=53.95 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+..+|+|++|+|||||+..|+...
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 24 LPIPARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 568899999999999999999999998653
No 337
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.65 E-value=0.0097 Score=57.66 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=27.5
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.=+.+.+|+..+|+|++|+|||||+..|+.-
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 3466889999999999999999999999864
No 338
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.65 E-value=0.0098 Score=55.55 Aligned_cols=30 Identities=7% Similarity=0.152 Sum_probs=27.3
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 28 l~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 28 FELEEGSFVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999998654
No 339
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.64 E-value=0.01 Score=54.32 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=26.6
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.|.+|+.++|+|++|+|||||+..|+..
T Consensus 33 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 33 MQIPKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56889999999999999999999999853
No 340
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.64 E-value=0.0096 Score=55.00 Aligned_cols=30 Identities=13% Similarity=0.286 Sum_probs=27.0
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 32 SLSLKSGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 367889999999999999999999999764
No 341
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.63 E-value=0.01 Score=54.71 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=26.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 31 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 31 LDIPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 56789999999999999999999999853
No 342
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.62 E-value=0.011 Score=54.81 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 45 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 45 LDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 567899999999999999999999998753
No 343
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.62 E-value=0.01 Score=53.88 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=26.5
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 25 LDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45889999999999999999999999875
No 344
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.62 E-value=0.01 Score=54.22 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 24 LTLQRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998654
No 345
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.62 E-value=0.009 Score=54.19 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=26.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 28 LSINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 45789999999999999999999998763
No 346
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.62 E-value=0.01 Score=56.74 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=29.4
Q ss_pred eeeec-ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 51 AIDVM-NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 51 aID~l-~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
++|-+ +.|.+|+..+|+|++|+|||||+..|+...
T Consensus 22 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 44433 478999999999999999999999998753
No 347
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.61 E-value=0.033 Score=55.22 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=24.0
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
..-+.|.|+.|+|||||++.+++.+.+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~ 139 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALA 139 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHh
Confidence 556889999999999999999999853
No 348
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.61 E-value=0.0053 Score=61.06 Aligned_cols=56 Identities=32% Similarity=0.498 Sum_probs=46.8
Q ss_pred cCCCcccccc--------ccccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 233 PNDDFKVSAA--------REEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 233 ~~~d~~dpi~--------~~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
--||++-..- -++.|.+++||...++.+...|||+|+ ...||+|.+++|.+++||-
T Consensus 240 ~~Dsltr~a~A~rei~l~~ge~P~~~gyp~~~f~~l~~l~ERag~--~~~GSIT~~~tv~~~~dd~ 303 (422)
T TIGR02546 240 MMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGN--GEKGSITALYTVLVEGDDM 303 (422)
T ss_pred EEeCchHHHHHHHHHHHhcCCCCcccccChhHHHHhHHHHHHhcC--CCCCceeEEEEEeccCCCC
Confidence 3567764422 258899999999999999999999998 4689999999999998874
No 349
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.61 E-value=0.011 Score=53.69 Aligned_cols=30 Identities=7% Similarity=0.100 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 25 LDFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 567899999999999999999999998653
No 350
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.61 E-value=0.0055 Score=60.81 Aligned_cols=59 Identities=25% Similarity=0.362 Sum_probs=49.7
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++-..-. ++.|.+++||...++.+...|||+|+ ...||+|.+++|.+++||-
T Consensus 229 Vll~~Dsltr~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~--~~~GSIT~~~tVl~~gdD~ 295 (413)
T TIGR03497 229 VLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGN--SQKGSITGFYTVLVDGDDM 295 (413)
T ss_pred EEEEEcCcHHHHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcC--CCCcceeEEEEEEccCCCC
Confidence 55556788765433 48899999999999999999999998 4689999999999998873
No 351
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.61 E-value=0.011 Score=53.89 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=26.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
+.+.+|+..+|+|++|+|||||+..|+.
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 27 ISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999999999985
No 352
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.60 E-value=0.011 Score=52.45 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=29.2
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 455778999999999999999999999998654
No 353
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.60 E-value=0.0095 Score=55.68 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=27.4
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
.=+.+.+|+-.+|+||.|+|||||+..|++
T Consensus 21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 21 LSFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 346788999999999999999999999998
No 354
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.60 E-value=0.0055 Score=61.44 Aligned_cols=61 Identities=30% Similarity=0.372 Sum_probs=51.3
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++-..-. ++.|.+++||...++.+...+||+|+...+.||+|.++++.+++||-
T Consensus 256 Vll~~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~ 324 (450)
T PRK06002 256 VLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDH 324 (450)
T ss_pred EEEeccchHHHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCC
Confidence 45556777755332 48899999999999999999999999877799999999999999884
No 355
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.60 E-value=0.011 Score=53.64 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=26.7
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 23 MQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 66789999999999999999999999864
No 356
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.58 E-value=0.01 Score=53.42 Aligned_cols=29 Identities=17% Similarity=0.447 Sum_probs=26.5
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.|.+|+.++|+|++|+|||||+..|+..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 56889999999999999999999998754
No 357
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.57 E-value=0.0063 Score=61.61 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=50.0
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++-..-. ++.|.+++||...++.+...+||+|+.. .||+|.+++|.+++||-
T Consensus 264 VLll~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~LlERaG~~~--~GSITai~tVl~~gdD~ 330 (494)
T CHL00060 264 VLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTK--EGSITSIQAVYVPADDL 330 (494)
T ss_pred EEEEcccchHHHHHHHHHHHhcCCCCCCCCcCCCHHHHhHHHHHhccCCC--CCCeeEEEEEECCCCCC
Confidence 45556788766433 4899999999999999999999999864 69999999999999983
No 358
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.011 Score=54.60 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=28.4
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 42 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334678899999999999999999999998653
No 359
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.57 E-value=0.01 Score=57.50 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=28.2
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.+.+|+..+|+|++|+|||||+..|+.-.
T Consensus 23 vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 44678899999999999999999999998743
No 360
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.01 Score=52.35 Aligned_cols=28 Identities=7% Similarity=0.179 Sum_probs=24.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+| +++|+|++|+|||||+..|+.-
T Consensus 21 ~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 21 LTLGPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred EEEcCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 457789 9999999999999999999864
No 361
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.012 Score=49.50 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=28.1
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.-+.+.+|+..+|.|++|+|||+|+..|+...
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334568899999999999999999999997654
No 362
>PRK14530 adenylate kinase; Provisional
Probab=95.56 E-value=0.011 Score=52.71 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=24.7
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
.|-++.|+|+||+||||++..|++.-+.
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3669999999999999999999988754
No 363
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.56 E-value=0.012 Score=52.98 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=26.8
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 43 FEVPRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999999864
No 364
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.011 Score=55.18 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=28.3
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|.=+.|.+|+.++|+|++|+|||||+..|+..
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34468899999999999999999999999863
No 365
>PRK08149 ATP synthase SpaL; Validated
Probab=95.55 E-value=0.0062 Score=60.70 Aligned_cols=59 Identities=27% Similarity=0.477 Sum_probs=49.6
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||+|...-. ++.|.+++||...++.+...|||+|+.. -||+|.+++|.+++||-
T Consensus 243 Vll~~DslTr~A~A~rEi~l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~~--~GSIT~~~tVl~~~dD~ 309 (428)
T PRK08149 243 VVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATL--AGSITAFYTVLLESEEE 309 (428)
T ss_pred EEEEccchHHHHHHHHHhHhhcCCCCcccccCccHHHHHHHHHHhccCCC--CCCceEEEEEEecCCCC
Confidence 45556777765433 4889999999999999999999999985 59999999999999983
No 366
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.54 E-value=0.011 Score=54.16 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=26.0
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.+.+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999999998754
No 367
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.54 E-value=0.011 Score=53.01 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=27.6
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
-+.+.+|+..+|.|++|+|||||+..|+...
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4568899999999999999999999998654
No 368
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.54 E-value=0.039 Score=58.51 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=24.9
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-++-..++|.||+|+|||||+..|++...
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 35556899999999999999999998763
No 369
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.54 E-value=0.012 Score=53.59 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=26.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 25 LPIYENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999999999999864
No 370
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.54 E-value=0.011 Score=55.32 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=28.2
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|.=+.|.+|++++|+|++|+|||||+..|+.-
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 44567889999999999999999999999864
No 371
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.53 E-value=0.012 Score=54.21 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|-+|+.++|+|++|+|||||+..|+...
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 40 LDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 567899999999999999999999998753
No 372
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.53 E-value=0.011 Score=55.08 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=27.3
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999998754
No 373
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.53 E-value=0.048 Score=54.47 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=23.2
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.++..++++|++|+||||++..++...
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356679999999999999999999754
No 374
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.52 E-value=0.011 Score=57.32 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=27.1
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
.=+.|..|.-+.|+||+|||||||+.+||-
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 445789999999999999999999999985
No 375
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.52 E-value=0.012 Score=54.61 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=26.3
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 40 s~~i~~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 40 HLKIPAKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999999999999984
No 376
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.069 Score=52.23 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=61.7
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCcc---chhHHHHHHhhhhCCccccEEEEee
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVN---METARFFKQDFEENGSMENVCLFLN 138 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer---~e~~~~~~~~l~~~g~~~~tvvv~s 138 (293)
.++.|.|++|+|||.++..++++.... .+...++|+=|=+- ......+.+.+.
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~-----------~~~~~~~yINc~~~~t~~~i~~~i~~~~~------------- 98 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEES-----------SANVEVVYINCLELRTPYQVLSKILNKLG------------- 98 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhh-----------hccCceEEEeeeeCCCHHHHHHHHHHHcC-------------
Confidence 358999999999999999999987532 12222677655443 345555555442
Q ss_pred CCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHH
Q psy5595 139 LANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEAL 183 (293)
Q Consensus 139 tsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~ 183 (293)
..|.........=..+-+++..+ ++.++|++|++-.+....
T Consensus 99 ---~~p~~g~~~~~~~~~l~~~~~~~-~~~~IvvLDEid~L~~~~ 139 (366)
T COG1474 99 ---KVPLTGDSSLEILKRLYDNLSKK-GKTVIVILDEVDALVDKD 139 (366)
T ss_pred ---CCCCCCCchHHHHHHHHHHHHhc-CCeEEEEEcchhhhcccc
Confidence 33443444444444556777776 899999999987765443
No 377
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.51 E-value=0.012 Score=54.72 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=28.2
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 334568899999999999999999999998643
No 378
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.51 E-value=0.012 Score=57.06 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=28.0
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.+..|+..+|+|++|+|||||+..|+--.
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44567899999999999999999999998753
No 379
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.51 E-value=0.011 Score=54.08 Aligned_cols=30 Identities=10% Similarity=0.275 Sum_probs=26.6
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 457899999999999999999999998654
No 380
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.51 E-value=0.012 Score=49.54 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=26.7
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+-+|+..+|+|++|+|||||+..|+...
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 357799999999999999999999997654
No 381
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.50 E-value=0.011 Score=54.94 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=26.5
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.|.+|+..+|+|++|+|||||+..|+..
T Consensus 22 l~i~~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 22 LRIEPGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999999764
No 382
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.50 E-value=0.012 Score=54.60 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=29.0
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.|.+|++++|+|++|+|||||+..|+...
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 455678899999999999999999999998754
No 383
>PRK06820 type III secretion system ATPase; Validated
Probab=95.50 E-value=0.0064 Score=60.84 Aligned_cols=60 Identities=27% Similarity=0.377 Sum_probs=50.2
Q ss_pred EEEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 229 ILTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
=|++--||++-..-. ++.|.+++||...++.+...+||+|+. ..||+|.+++|.+++||-
T Consensus 254 ~VLl~~Dsltr~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ERag~~--~~GSIT~i~tVl~~gdD~ 321 (440)
T PRK06820 254 KVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNS--DRGSITAFYTVLVEGDDM 321 (440)
T ss_pred CEEEEccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC--CCcceeEEEEEEccCCCC
Confidence 455566787755333 488999999999999999999999995 589999999999998873
No 384
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.49 E-value=0.0061 Score=60.93 Aligned_cols=59 Identities=31% Similarity=0.452 Sum_probs=49.3
Q ss_pred EEecCCCcccccc--------ccccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAA--------REEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~--------~~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||+|-..- -++.|.+++||...++.+...|||+|+. ..||+|.+++|.+++||-
T Consensus 254 Vll~~DslTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l~ERaG~~--~~GSIT~i~tVl~~gdD~ 320 (439)
T PRK06936 254 VLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQS--DKGSITALYTVLVEGDDM 320 (439)
T ss_pred EEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC--CCcceeeeEEEEccCCCC
Confidence 4555677775532 2589999999999999999999999974 589999999999998873
No 385
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=95.49 E-value=0.012 Score=54.22 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=27.7
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 33 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999999998754
No 386
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.48 E-value=0.013 Score=52.04 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 568899999999999999999999998653
No 387
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.012 Score=51.58 Aligned_cols=28 Identities=7% Similarity=0.208 Sum_probs=25.8
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999999999985
No 388
>KOG0731|consensus
Probab=95.48 E-value=0.026 Score=59.86 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=65.4
Q ss_pred eeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDP 143 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~ 143 (293)
++|+||||||||-|+..+|-.++ -.+++.+.+.++=+|++.| ...++++...-+. ..-+++|..--|..
T Consensus 347 vLL~GPPGTGKTLLAKAiAGEAg------VPF~svSGSEFvE~~~g~~--asrvr~lf~~ar~---~aP~iifideida~ 415 (774)
T KOG0731|consen 347 VLLVGPPGTGKTLLAKAIAGEAG------VPFFSVSGSEFVEMFVGVG--ASRVRDLFPLARK---NAPSIIFIDEIDAV 415 (774)
T ss_pred eEEECCCCCcHHHHHHHHhcccC------CceeeechHHHHHHhcccc--hHHHHHHHHHhhc---cCCeEEEecccccc
Confidence 78999999999999999998875 3455555555556666666 5555555544333 33678888888887
Q ss_pred hhhhh------chHHHHHHHHHHHHHhcC
Q psy5595 144 TIERI------ITPRLALTTAEFLAYQCE 166 (293)
Q Consensus 144 ~~~r~------~a~~~a~tiAEyfr~~~G 166 (293)
...|- --.....++..++.++-|
T Consensus 416 ~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 416 GRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred cccccccccCCCChHHHHHHHHHHHHhcC
Confidence 77772 345677889999987644
No 389
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.47 E-value=0.012 Score=54.37 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=26.6
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.|-+|+..+|+|++|+|||||+..|+.-
T Consensus 34 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 34 CDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 67889999999999999999999999864
No 390
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.47 E-value=0.0066 Score=60.64 Aligned_cols=59 Identities=29% Similarity=0.390 Sum_probs=50.1
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDV 289 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~ 289 (293)
|++--||++-..-. ++.|.+++||...++.+...|||+|+.. .-||+|.+++|.+++||
T Consensus 248 Vll~~DslTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~-g~GSIT~~~tVlv~gdD 314 (434)
T PRK08472 248 VLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEE-GKGSITAFFTVLVEGDD 314 (434)
T ss_pred EEEecccchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhccCC-CCceeeEeEEEEecCCC
Confidence 55667888765433 4889999999999999999999999974 38999999999999887
No 391
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.47 E-value=0.013 Score=53.52 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=26.5
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+..+|+|++|+|||||+..|+.-
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999999764
No 392
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=95.46 E-value=0.013 Score=52.13 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=26.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+..+|.|++|+|||||+..|+..
T Consensus 26 ~~i~~G~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 26 LEINPGEIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999999754
No 393
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.46 E-value=0.012 Score=54.62 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=29.2
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.+-+|+++||+|.+|+|||||+..|+.-.
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 445789999999999999999999999998754
No 394
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.46 E-value=0.013 Score=56.22 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=27.6
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 35 sl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 35 SFTLERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 4568899999999999999999999998753
No 395
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=95.46 E-value=0.012 Score=55.70 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=27.5
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.=+.|.+|+.++|+|++|+|||||+..|+--
T Consensus 26 vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 26 VSVEINQGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3467899999999999999999999999854
No 396
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.46 E-value=0.013 Score=53.30 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=26.8
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+..+|+|++|+|||||+..|+...
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 25 MDFPERQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999999998753
No 397
>PRK05748 replicative DNA helicase; Provisional
Probab=95.45 E-value=0.044 Score=54.53 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=37.7
Q ss_pred CCCceeeeeccc-ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 46 SSGKRAIDVMNS-IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 46 ~TGiraID~l~p-igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.||+..+|-++- +.+|+=+.|-|.||+|||+++.+|+.+++
T Consensus 187 ~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a 228 (448)
T PRK05748 187 PTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVA 228 (448)
T ss_pred cCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHH
Confidence 899999999874 78899999999999999999999999874
No 398
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.013 Score=52.72 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=27.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|.|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999998764
No 399
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.44 E-value=0.0079 Score=59.81 Aligned_cols=61 Identities=28% Similarity=0.342 Sum_probs=50.4
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||+|-..-. ++.|.+++||...++.+...+||+|+.....||+|.+++|.+++||-
T Consensus 232 Vll~~DslTr~A~A~REisl~~gepP~~~gyp~~vf~~l~~L~ERag~~~~~~GSIT~~~tVl~~gdd~ 300 (418)
T TIGR03498 232 VLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFTVLVDGDDH 300 (418)
T ss_pred EEEeccchhHHHHHHHHHHHhcCCCCccccCCchhhhhhhHHHHHhccCCCCCcceeeeEEEeccCCCC
Confidence 34456777755332 48899999999999999999999998766689999999999998873
No 400
>KOG0727|consensus
Probab=95.44 E-value=0.033 Score=52.59 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=50.2
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEE------ecCccchhHHHHHHhhhhCCcccc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFA------AMGVNMETARFFKQDFEENGSMEN 132 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~------~iGer~e~~~~~~~~l~~~g~~~~ 132 (293)
-.-+-++++||||+|||.|+...++++.. .++-|.. -.||.++.++++.+--+++. -
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a--------------~firvvgsefvqkylgegprmvrdvfrlakena---p 249 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTA--------------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA---P 249 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccch--------------heeeeccHHHHHHHhccCcHHHHHHHHHHhccC---C
Confidence 34566899999999999999999998853 2333322 35777888888776655544 5
Q ss_pred EEEEeeCCCCchhhhh
Q psy5595 133 VCLFLNLANDPTIERI 148 (293)
Q Consensus 133 tvvv~stsd~~~~~r~ 148 (293)
+++|..--|.-+..|+
T Consensus 250 siifideidaiatkrf 265 (408)
T KOG0727|consen 250 SIIFIDEIDAIATKRF 265 (408)
T ss_pred cEEEeehhhhHhhhhc
Confidence 6777766555444444
No 401
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.44 E-value=0.013 Score=54.37 Aligned_cols=30 Identities=7% Similarity=0.160 Sum_probs=27.2
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=+.|.+|+.++|+|++|+|||||+..|+..
T Consensus 22 sl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 51 (275)
T PRK13639 22 NFKAEKGEMVALLGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 367889999999999999999999999864
No 402
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.44 E-value=0.013 Score=53.75 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=27.7
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|.=+.+.+|++++|+|++|+|||||+..|+..
T Consensus 34 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 34 NINMMVHEKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 34456889999999999999999999999754
No 403
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.43 E-value=0.013 Score=54.72 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=27.2
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=+.|.+|+.++|+|++|+|||||+..|+..
T Consensus 59 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 59 SMDIPENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357899999999999999999999999854
No 404
>PRK13808 adenylate kinase; Provisional
Probab=95.43 E-value=0.19 Score=48.71 Aligned_cols=32 Identities=16% Similarity=0.374 Sum_probs=27.6
Q ss_pred eeeEecCCCCChhHHHHHHHHHhcccccCCcc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAGLVKMPGKS 94 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~ 94 (293)
|++|+|+||+||||++..|+..-+..++....
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gd 33 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGD 33 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccH
Confidence 79999999999999999999988877776433
No 405
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.42 E-value=0.013 Score=53.85 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=25.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
+.+.+|+.+.|+||+|+|||||+..|..
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999999997743
No 406
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.42 E-value=0.011 Score=51.06 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
|++|+|+||+||||++..|+..-+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998764
No 407
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.047 Score=56.06 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=27.5
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-++.+|+.++|+|+.|+||||++..|+....
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999987653
No 408
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.41 E-value=0.014 Score=53.31 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 26 LQANAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999999998754
No 409
>PRK09087 hypothetical protein; Validated
Probab=95.41 E-value=0.021 Score=51.92 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=22.4
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+..+.|.|++|+|||||++.++++.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~ 69 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD 69 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC
Confidence 33589999999999999999987764
No 410
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.41 E-value=0.021 Score=51.17 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=35.3
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccch
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNME 115 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e 115 (293)
+.+|+-.+|.|+||+|||+++.+++.+..+. .+..++|...-+..+
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~------------~g~~vly~s~E~~~~ 55 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKK------------QGKPVLFFSLEMSKE 55 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh------------CCCceEEEeCCCCHH
Confidence 6789999999999999999999999887531 123566666666544
No 411
>PRK06620 hypothetical protein; Validated
Probab=95.41 E-value=0.04 Score=49.67 Aligned_cols=25 Identities=4% Similarity=-0.094 Sum_probs=22.0
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..+.|.||+|+|||||++.+++...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 4589999999999999999888764
No 412
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.40 E-value=0.013 Score=54.70 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 28 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~ 57 (287)
T PRK13637 28 IEIEDGEFVGLIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 678899999999999999999999998653
No 413
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.40 E-value=0.014 Score=53.54 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=26.8
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 28 MDIYRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 56889999999999999999999999875
No 414
>PRK02496 adk adenylate kinase; Provisional
Probab=95.39 E-value=0.24 Score=42.68 Aligned_cols=29 Identities=7% Similarity=0.198 Sum_probs=24.0
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhccccc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAGLVKM 90 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~~~~~ 90 (293)
.|+.|+|+||+||||++..|+..-+..++
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i 30 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHI 30 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 37899999999999999999987654444
No 415
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.39 E-value=0.014 Score=46.40 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.1
Q ss_pred eeEecCCCCChhHHHHHHHHHh
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|+|.|.+|+|||||+..+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998874
No 416
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.38 E-value=0.2 Score=44.84 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=66.0
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCc-cchhHHHHHHh----hhhCCccccEE
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGV-NMETARFFKQD----FEENGSMENVC 134 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGe-r~e~~~~~~~~----l~~~g~~~~tv 134 (293)
....+.|++++|.||||++..++..+.- .+..+.+|--+=|. ...|...+.+- +...| +..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g-----------~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g---~~~ 86 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG-----------HGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMG---TGF 86 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH-----------CCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECC---CCC
Confidence 4568999999999999999988777642 11234444445555 34555555431 11111 111
Q ss_pred EEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHH
Q psy5595 135 LFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAE 181 (293)
Q Consensus 135 vv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~ 181 (293)
.+. + +...+....+..++..|...... |+.-|||+|.+..-..
T Consensus 87 ~~~-~--~~~~e~~~~~~~~~~~a~~~l~~-~~ydlvVLDEi~~Al~ 129 (191)
T PRK05986 87 TWE-T--QDRERDIAAAREGWEEAKRMLAD-ESYDLVVLDELTYALK 129 (191)
T ss_pred ccc-C--CCcHHHHHHHHHHHHHHHHHHhC-CCCCEEEEehhhHHHH
Confidence 222 1 23446777888889888777776 8888999999986544
No 417
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=95.38 E-value=0.014 Score=56.07 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=29.0
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.|.+|+.++|+|++|+|||||+..|+.-.
T Consensus 39 ~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 445679999999999999999999999998643
No 418
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.38 E-value=0.014 Score=54.13 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=27.3
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 578899999999999999999999998653
No 419
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.37 E-value=0.014 Score=54.78 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=28.5
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.+.+|++++|+|++|+|||||+..|+...
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578899999999999999999999998754
No 420
>PF13479 AAA_24: AAA domain
Probab=95.37 E-value=0.098 Score=46.83 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.7
Q ss_pred CCceeeEecCCCCChhHHHHHH
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I 81 (293)
++.|++|.|+||+|||+++..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 4679999999999999998865
No 421
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.35 E-value=0.013 Score=53.01 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=26.5
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45789999999999999999999998875
No 422
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.35 E-value=0.014 Score=54.08 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=27.8
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.|.+|+.++|.|++|+|||||+..|+...
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 22 NLVIKKGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3678899999999999999999999998754
No 423
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.35 E-value=0.014 Score=54.97 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=26.7
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+..+|+|++|+|||||+..|+.-
T Consensus 23 ~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 23 FEAQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999999864
No 424
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.35 E-value=0.014 Score=57.17 Aligned_cols=31 Identities=13% Similarity=0.226 Sum_probs=27.9
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.=+.+.+|+..+|+|++|+|||||+..|+--
T Consensus 33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl 63 (375)
T PRK09452 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGF 63 (375)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4477899999999999999999999999863
No 425
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=95.35 E-value=0.015 Score=53.75 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=26.6
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+..+|+|++|+|||||+..|+..
T Consensus 46 ~~i~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 46 MRIPKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 56789999999999999999999999865
No 426
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.34 E-value=0.015 Score=54.96 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=27.6
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.=+.|.+|+.++|+|++|+|||||+..|+..
T Consensus 64 is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 64 VSMDIPEKSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3467899999999999999999999999854
No 427
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.34 E-value=0.015 Score=53.45 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=27.1
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
|.=+.|.+|.-+.|.||+|+|||||+..|+-
T Consensus 23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4446799999999999999999999998764
No 428
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.34 E-value=0.023 Score=52.07 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=35.9
Q ss_pred CCCceeeeecc-cccCCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 46 SSGKRAIDVMN-SIARGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 46 ~TGiraID~l~-pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
.||++.+|-++ -+.+|+=..|-|.||+|||+++.+|+.++..
T Consensus 3 ~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~ 45 (259)
T PF03796_consen 3 PTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAAL 45 (259)
T ss_dssp -SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHH
Confidence 69999999886 6888999999999999999999999999864
No 429
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.33 E-value=0.015 Score=54.19 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 28 l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 28 FSIPRGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 457799999999999999999999998754
No 430
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.32 E-value=0.015 Score=54.09 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=28.7
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334678899999999999999999999998754
No 431
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.015 Score=53.54 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~ 60 (257)
T PRK14246 31 IKIPNNSIFGIMGPSGSGKSTLLKVLNRLI 60 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999998653
No 432
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.31 E-value=0.0086 Score=59.94 Aligned_cols=60 Identities=32% Similarity=0.493 Sum_probs=49.1
Q ss_pred EEEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 229 ILTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
=|++--||+|-..-. ++.|.+++||...++.+..+|||+|+. ..||+|.+++|.+++||-
T Consensus 254 ~VLl~~DslTr~A~A~REisl~~gepP~~~gyP~~vf~~l~~l~ERag~~--~~GSIT~i~tVl~~~dd~ 321 (441)
T PRK09099 254 RVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMG--ETGSITALYTVLAEDESG 321 (441)
T ss_pred CEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHhHHHHHhhcCC--CCcchheeEEEEecCCCc
Confidence 355556787755332 488999999999999999999999964 589999999998888874
No 433
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.30 E-value=0.016 Score=53.07 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=25.2
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
....|+.|+|+||+||||++..|+..-+.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~ 32 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENL 32 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34578999999999999999999988753
No 434
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.30 E-value=0.094 Score=49.17 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=18.4
Q ss_pred eeEecCCCCChhHHHHHHHHHhc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.|.|-||+|||+++.+|.....
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999988753
No 435
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.29 E-value=0.015 Score=45.99 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.1
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
|+.|+|++|+|||+|+..++....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 789999999999999999987653
No 436
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=95.28 E-value=0.015 Score=53.09 Aligned_cols=30 Identities=7% Similarity=0.116 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 567899999999999999999999998654
No 437
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.28 E-value=0.015 Score=56.62 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=27.0
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=+.+.+|+..+|+|++|+|||||+..|+.-
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 356889999999999999999999999864
No 438
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.27 E-value=0.016 Score=54.33 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=27.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLL 57 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 678899999999999999999999998654
No 439
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.27 E-value=0.016 Score=53.31 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=26.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 29 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 29 VPIRKNEITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 56889999999999999999999988754
No 440
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.26 E-value=0.015 Score=56.17 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=27.5
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+..+|+|++|+|||||+..|+.-.
T Consensus 25 sl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~ 55 (343)
T TIGR02314 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999999999997643
No 441
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.016 Score=51.29 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=29.1
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.+.+ +..+|+|++|+|||||+..|+...
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 77789999 999999999999999999987653
No 442
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.26 E-value=0.017 Score=49.53 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=22.6
Q ss_pred CceeeEecCCCCChhHHHHHHHHHh
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|+.+.|.|++|+|||||+..|+...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5788999999999999999998875
No 443
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.24 E-value=0.11 Score=46.76 Aligned_cols=34 Identities=9% Similarity=-0.111 Sum_probs=25.4
Q ss_pred eeeecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 51 AIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 51 aID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
..|..+.=+.+.++.|.|+.|+|||||+..|+..
T Consensus 19 pnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 19 PNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred cceEEecCCCceEEEEECCCCCChHHHHHHHHHH
Confidence 4444443222478999999999999999998854
No 444
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.24 E-value=0.017 Score=52.83 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 42 AYIKPGQKVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 568899999999999999999999998753
No 445
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.23 E-value=0.016 Score=55.44 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=27.7
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+.-.
T Consensus 28 l~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 28 YSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 789999999999999999999999998754
No 446
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.23 E-value=0.017 Score=53.82 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=27.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+..+|+|++|+|||||+..|+...
T Consensus 28 l~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~ 57 (279)
T PRK13635 28 FSVYEGEWVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 678899999999999999999999998654
No 447
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.22 E-value=0.085 Score=49.20 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=33.3
Q ss_pred CCce-eeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHH
Q psy5595 60 RGQK-IPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETAR 118 (293)
Q Consensus 60 rGQr-~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~ 118 (293)
.|.- .+|+|||++|||||+..|+|..+. + +||-.+.-+ +-|+||.|-+.
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~----g---~~~~l~kkv---~IiDersEIag 184 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSD----G---INQFLPKKV---GIIDERSEIAG 184 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhc----c---ccccCCceE---EEEeccchhhc
Confidence 4544 899999999999999999998753 1 223222223 33577776654
No 448
>KOG0733|consensus
Probab=95.22 E-value=0.04 Score=57.23 Aligned_cols=140 Identities=21% Similarity=0.262 Sum_probs=82.3
Q ss_pred eeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDP 143 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~ 143 (293)
+++-||||||||.|+..|+++.+.. ++.- .+.-+|-..-||.-+..+++.++-... .-+++|.---|.=
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vP------f~~i--sApeivSGvSGESEkkiRelF~~A~~~---aPcivFiDeIDAI 294 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELGVP------FLSI--SAPEIVSGVSGESEKKIRELFDQAKSN---APCIVFIDEIDAI 294 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcCCc------eEee--cchhhhcccCcccHHHHHHHHHHHhcc---CCeEEEeeccccc
Confidence 7889999999999999999998642 2221 233456666777766666666544332 3567777554433
Q ss_pred h---------hhhhchHHHHHHHHHHHHH-hcCCceEEEe-----cc----hhHHHHHHHHHhhhcCCCCCC--------
Q psy5595 144 T---------IERIITPRLALTTAEFLAY-QCEKHVLVIL-----TD----MSSYAEALREVSAAREEVPGR-------- 196 (293)
Q Consensus 144 ~---------~~r~~a~~~a~tiAEyfr~-~~G~~VLli~-----Ds----ltr~a~A~reisl~~ge~p~~-------- 196 (293)
. ++|-.++..-..+-|--+. ..|+.||||- |+ |-|-.+--|||.+ -.|+.
T Consensus 295 ~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l---~vP~e~aR~~IL~ 371 (802)
T KOG0733|consen 295 TPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICL---GVPSETAREEILR 371 (802)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeee---cCCchHHHHHHHH
Confidence 2 2333333333333332222 1277888884 33 3444444556544 12221
Q ss_pred ------------------CCCCCchhhhHHHHhhhhccc
Q psy5595 197 ------------------RGFPGYMYTNLATIYERAGRV 217 (293)
Q Consensus 197 ------------------~gyp~~lf~~la~l~ERag~~ 217 (293)
+--||++-.+|..|.-+|+.+
T Consensus 372 ~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~v 410 (802)
T KOG0733|consen 372 IICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFV 410 (802)
T ss_pred HHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 234888888888887777753
No 449
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.018 Score=52.01 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|++.+|.|++|+|||||+..|+...
T Consensus 20 ~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~ 49 (235)
T cd03299 20 LEVERGDYFVILGPTGSGKSVLLETIAGFI 49 (235)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 678899999999999999999999987753
No 450
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.21 E-value=0.0076 Score=60.16 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=49.4
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++-..-. ++.|.+++||...++.+...+||+|.. ..||+|.+++|.+++||-
T Consensus 247 VLl~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~--~~GSIT~~~tVl~~gdD~ 313 (433)
T PRK07594 247 VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDM 313 (433)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHhhcCC--CCcchheeeeeeecCCCC
Confidence 45556788765332 599999999999999999999999964 689999999999998873
No 451
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.062 Score=53.49 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=24.6
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++.+++|+|+.|+||||++..|+.+..
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4568999999999999999999998763
No 452
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.20 E-value=0.017 Score=55.74 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=30.1
Q ss_pred eeeee-cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 50 RAIDV-MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 50 raID~-l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.++|- =+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34533 3689999999999999999999999998754
No 453
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.20 E-value=0.016 Score=55.66 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=27.3
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+.-.
T Consensus 37 l~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 37 FSLRAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 578899999999999999999999998654
No 454
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=95.19 E-value=0.022 Score=55.01 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=29.8
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.+.+|+..+|+|++|+|||||+..|+...
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~ 47 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT 47 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 666889999999999999999999999998754
No 455
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.018 Score=52.93 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 28 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 28 MEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 568899999999999999999999998654
No 456
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.17 E-value=0.018 Score=53.43 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=27.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 25 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 25 FIAPRNSRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 678899999999999999999999998754
No 457
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.17 E-value=0.025 Score=53.50 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=22.5
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-+++.+||+|+|||+++..+++.+.
T Consensus 152 knVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred ceeEEECCCCccHHHHHHHHhcccC
Confidence 3789999999999999999998874
No 458
>PRK14532 adenylate kinase; Provisional
Probab=95.16 E-value=0.016 Score=50.19 Aligned_cols=24 Identities=13% Similarity=0.320 Sum_probs=21.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++.|+|+||+||||++..|+..-+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998764
No 459
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.16 E-value=0.018 Score=53.93 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=28.3
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.|.+|++++|+|++|+|||||+..|++-..
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 5789999999999999999999999987753
No 460
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.15 E-value=0.017 Score=54.69 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+..+|+|++|+|||||+..|+.-.
T Consensus 28 l~i~~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 28 FHVQRGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999998754
No 461
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.15 E-value=0.015 Score=58.61 Aligned_cols=32 Identities=9% Similarity=0.238 Sum_probs=28.1
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
=+.|-+|++++|+|++|+|||||+..|.+-..
T Consensus 355 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 355 SLDLPPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35689999999999999999999999987543
No 462
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=95.11 E-value=0.017 Score=52.74 Aligned_cols=31 Identities=10% Similarity=0.265 Sum_probs=27.2
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.=+.+.+|+..+|.|++|+|||||+..|+..
T Consensus 15 vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3357889999999999999999999988754
No 463
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.10 E-value=0.077 Score=49.80 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=25.6
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.+|+.++|+||.|+||||++..++....
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999998764
No 464
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.019 Score=55.30 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=27.5
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 25 sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 25 SLHIPAGEIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578899999999999999999999998653
No 465
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=95.08 E-value=0.019 Score=55.87 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=27.3
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.=+.|.+|+..+|+|++|+|||||+..|+--
T Consensus 24 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 54 (362)
T TIGR03258 24 LSLEIEAGELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3356789999999999999999999999864
No 466
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.04 E-value=0.014 Score=49.40 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=18.1
Q ss_pred eeeEecCCCCChhHHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|+.|.|++++|||||+..++..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7899999999999999999987
No 467
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.03 E-value=0.022 Score=49.86 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=24.6
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.+|+-++|.|++|+|||+|+..|++.-
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999998864
No 468
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.03 E-value=0.044 Score=50.89 Aligned_cols=38 Identities=11% Similarity=0.272 Sum_probs=30.7
Q ss_pred CCceeeeecccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 47 TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++++-|+ +.|-+|+.+.|+|++|+|||||+..|.....
T Consensus 18 ~aL~~Vn--l~I~~GE~VaiIG~SGaGKSTLLR~lngl~d 55 (258)
T COG3638 18 QALKDVN--LEINQGEMVAIIGPSGAGKSTLLRSLNGLVD 55 (258)
T ss_pred eeeeeEe--EEeCCCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 3344444 4678999999999999999999999988654
No 469
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.03 E-value=0.021 Score=53.05 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 28 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 28 FSITKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999999999998654
No 470
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.03 E-value=0.15 Score=48.16 Aligned_cols=30 Identities=7% Similarity=0.141 Sum_probs=26.9
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..+++..++|.|++|+|||||+..++....
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999988764
No 471
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.02 E-value=0.019 Score=49.16 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.8
Q ss_pred CceeeEecCCCCChhHHHHHHHHHh
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|+.+.|.|++|+|||||+..|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 6789999999999999999998854
No 472
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.02 E-value=0.02 Score=56.01 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=27.6
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 68 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3467889999999999999999999999864
No 473
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.02 E-value=0.02 Score=49.90 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.3
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.|+.+.|.|++|+|||||+..|+...
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999999997764
No 474
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.01 E-value=0.021 Score=54.52 Aligned_cols=30 Identities=7% Similarity=0.114 Sum_probs=27.3
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 47 YTFEKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999999999999999999998753
No 475
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.01 E-value=0.02 Score=54.97 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=28.3
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.|.+|++++|+|++|+|||+|+..|++..
T Consensus 101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 33678899999999999999999999998764
No 476
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.01 E-value=0.14 Score=45.53 Aligned_cols=26 Identities=12% Similarity=0.003 Sum_probs=22.4
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
..|.-++|.||+|+|||||+.+|+..
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH
Confidence 34788899999999999999998753
No 477
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.99 E-value=0.022 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=22.3
Q ss_pred ccccCCceeeEecCCCCChhHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAA 79 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~ 79 (293)
+.+.+|+.++|+|++|+|||||+.
T Consensus 16 l~i~~Ge~~~l~G~sGsGKSTL~~ 39 (226)
T cd03270 16 VDIPRNKLVVITGVSGSGKSSLAF 39 (226)
T ss_pred eecCCCcEEEEEcCCCCCHHHHHH
Confidence 678999999999999999999974
No 478
>PRK03839 putative kinase; Provisional
Probab=94.99 E-value=0.02 Score=49.38 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=27.4
Q ss_pred eeeEecCCCCChhHHHHHHHHHhcccccCCcccc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVL 96 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~ 96 (293)
++.|+|+||+||||++..+++..+-..+..+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~ 35 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFA 35 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhh
Confidence 6899999999999999999998865555444444
No 479
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.98 E-value=0.019 Score=49.24 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.4
Q ss_pred eeEecCCCCChhHHHHHHHHHhcc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
+.|+|+||+||||++..|+..-+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~ 25 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF 25 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 689999999999999999987753
No 480
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.98 E-value=0.021 Score=53.06 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 31 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 60 (280)
T PRK13633 31 LEVKKGEFLVILGRNGSGKSTIAKHMNALL 60 (280)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999999998654
No 481
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.98 E-value=0.021 Score=50.64 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=24.5
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-+|..++|.|++|+|||||+..|+....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999987653
No 482
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.98 E-value=0.052 Score=44.49 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=21.3
Q ss_pred eeEecCCCCChhHHHHHHHHHhc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++|.|++|+|||+|+..+++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 68999999999999999999884
No 483
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=94.95 E-value=0.019 Score=59.82 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=28.1
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.|.+|++++|+|++|+|||||+..|+...
T Consensus 20 vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 20 ATATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33578999999999999999999999998753
No 484
>PRK08506 replicative DNA helicase; Provisional
Probab=94.95 E-value=0.12 Score=52.08 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=37.5
Q ss_pred CCCceeeeecc-cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 46 SSGKRAIDVMN-SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 46 ~TGiraID~l~-pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.||+.-+|-++ -+.+|+=+.|-|.||.|||+++.+|+.++.
T Consensus 176 ~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~ 217 (472)
T PRK08506 176 DTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKAL 217 (472)
T ss_pred cCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHH
Confidence 89999999986 477899999999999999999999999874
No 485
>PRK08233 hypothetical protein; Provisional
Probab=94.94 E-value=0.024 Score=48.24 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=22.8
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.-++|.|++|+|||||+..|+..-.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46689999999999999999998764
No 486
>PLN03073 ABC transporter F family; Provisional
Probab=94.93 E-value=0.018 Score=60.99 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=28.2
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
|.=+.|..|+|++|+|++|+|||||+..|+.
T Consensus 195 ~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 195 DASVTLAFGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4567899999999999999999999999975
No 487
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.93 E-value=0.023 Score=52.96 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=27.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 27 ~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~ 56 (283)
T PRK13636 27 INIKKGEVTAILGGNGAGKSTLFQNLNGIL 56 (283)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567899999999999999999999998764
No 488
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=94.92 E-value=0.021 Score=57.57 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=27.9
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.=+.+.+|++++|+|++|+|||||+..|+..
T Consensus 19 is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 19 ISFTIEEGEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3457889999999999999999999999876
No 489
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.92 E-value=0.028 Score=47.23 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=25.4
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
++..+.|+|++|+|||+++..++...+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999999998754
No 490
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.14 Score=52.04 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.1
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
++-+++.||+|+|||+++..+++...+
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 345799999999999999999998753
No 491
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.89 E-value=0.02 Score=55.84 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=29.6
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
|.=+.+.+|+..+|+|++|+|||||+.+|+.-..
T Consensus 11 ~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~ 44 (363)
T TIGR01186 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE 44 (363)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 3446789999999999999999999999987653
No 492
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.89 E-value=0.47 Score=41.23 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=60.3
Q ss_pred eeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCc-cchhHHHHHHhhhhCCc----cccEEEEe
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGV-NMETARFFKQDFEENGS----MENVCLFL 137 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGe-r~e~~~~~~~~l~~~g~----~~~tvvv~ 137 (293)
-+-|+.++|.|||+++..++..+.. | +....+|--+=|. ...|...+.+ +. ++ +.+...+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~----------~-g~~v~~vQFlKg~~~~gE~~~l~~-l~--~v~~~~~g~~~~~~ 69 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALG----------H-GYRVGVVQFLKGGWKYGELKALER-LP--NIEIHRMGRGFFWT 69 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH----------C-CCeEEEEEEeCCCCccCHHHHHHh-CC--CcEEEECCCCCccC
Confidence 5678899999999999988887742 1 1223333334442 3344444433 21 10 00111111
Q ss_pred eCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHH
Q psy5595 138 NLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSY 179 (293)
Q Consensus 138 stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~ 179 (293)
. +.+.+....+..+...|...... |+.-|||+|++..-
T Consensus 70 ~---~~~~~~~~~a~~~~~~a~~~~~~-~~~dLlVLDEi~~a 107 (159)
T cd00561 70 T---ENDEEDIAAAAEGWAFAKEAIAS-GEYDLVILDEINYA 107 (159)
T ss_pred C---CChHHHHHHHHHHHHHHHHHHhc-CCCCEEEEechHhH
Confidence 1 23457777888888888777776 88889999999764
No 493
>PRK04296 thymidine kinase; Provisional
Probab=94.88 E-value=0.19 Score=44.24 Aligned_cols=26 Identities=12% Similarity=-0.070 Sum_probs=22.4
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
|+=.+|.|++|+|||+++..++.+..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~ 27 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE 27 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56678999999999999998888764
No 494
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.87 E-value=0.019 Score=50.97 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.4
Q ss_pred eeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
|+.|+|+||+||||++..|+..-+.
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~ 25 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGL 25 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCC
Confidence 6899999999999999999987654
No 495
>PRK14528 adenylate kinase; Provisional
Probab=94.87 E-value=0.025 Score=49.65 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=22.5
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+++.|+|+||+||||++..|+..-+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987764
No 496
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.85 E-value=0.03 Score=48.88 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=26.8
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhcccccCC
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPG 92 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~ 92 (293)
.|+.+.|+|++|+|||||+..|+.......+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~g 34 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDG 34 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECC
Confidence 488999999999999999999998765433333
No 497
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.022 Score=58.14 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=27.4
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
-+.+.+|+|+.|+|.+|+|||||++-|++.
T Consensus 358 ~l~l~~GEkvAIlG~SGsGKSTllqLl~~~ 387 (573)
T COG4987 358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGA 387 (573)
T ss_pred ceeecCCCeEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999999999999973
No 498
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.81 E-value=0.023 Score=48.04 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=24.0
Q ss_pred eeEecCCCCChhHHHHHHHHHhcccccCCcc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAGLVKMPGKS 94 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~ 94 (293)
+.|.|++|+||||++..+++..+...+.+|.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~ 31 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDD 31 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCcc
Confidence 4689999999999999999987543333333
No 499
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.80 E-value=0.021 Score=59.32 Aligned_cols=31 Identities=6% Similarity=0.137 Sum_probs=27.6
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.|.+|++++|+|++|+|||||+..|+...
T Consensus 23 s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3568899999999999999999999998754
No 500
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.79 E-value=0.21 Score=45.44 Aligned_cols=37 Identities=14% Similarity=-0.098 Sum_probs=31.3
Q ss_pred ceeeeecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 49 KRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 49 iraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
...-|.-+.+..|++.+|.|++|.|||+++..|+...
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~ 55 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALIT 55 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456777778899999999999999999999888743
Done!