Query psy5595
Match_columns 293
No_of_seqs 194 out of 1456
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:33:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vr4_D V-type sodium ATPase su 100.0 8E-70 2.8E-74 533.7 18.6 251 2-266 97-360 (465)
2 2c61_A A-type ATP synthase non 100.0 1.5E-69 5E-74 533.7 20.3 251 2-267 98-362 (469)
3 3gqb_B V-type ATP synthase bet 100.0 1.3E-69 4.6E-74 532.0 18.5 256 2-266 93-363 (464)
4 3oaa_A ATP synthase subunit al 100.0 2.5E-68 8.6E-73 527.1 18.7 245 2-266 108-379 (513)
5 2qe7_A ATP synthase subunit al 100.0 1.3E-67 4.6E-72 522.4 20.9 245 2-266 108-368 (502)
6 1fx0_A ATP synthase alpha chai 100.0 1.4E-67 4.7E-72 522.9 20.8 246 1-266 108-369 (507)
7 2r9v_A ATP synthase subunit al 100.0 1.3E-67 4.6E-72 523.0 18.8 245 2-266 121-381 (515)
8 1fx0_B ATP synthase beta chain 100.0 1.9E-67 6.4E-72 521.0 18.4 245 2-265 111-375 (498)
9 2ck3_A ATP synthase subunit al 100.0 2.9E-67 9.9E-72 520.8 18.2 253 2-266 108-376 (510)
10 2ck3_D ATP synthase subunit be 100.0 9.9E-67 3.4E-71 514.1 20.1 245 2-265 99-362 (482)
11 3vr4_A V-type sodium ATPase ca 100.0 2.9E-65 9.9E-70 511.2 17.8 237 12-266 177-446 (600)
12 3gqb_A V-type ATP synthase alp 100.0 2.3E-65 7.8E-70 510.2 14.4 216 33-266 194-433 (578)
13 3mfy_A V-type ATP synthase alp 100.0 4.5E-65 1.5E-69 508.3 10.5 215 34-266 202-441 (588)
14 3l0o_A Transcription terminati 100.0 6E-62 2E-66 469.9 12.5 231 13-266 118-373 (427)
15 1sky_E F1-ATPase, F1-ATP synth 100.0 4.4E-60 1.5E-64 467.0 17.3 245 2-265 96-354 (473)
16 3ice_A Transcription terminati 100.0 3.5E-60 1.2E-64 458.0 10.7 219 25-266 136-372 (422)
17 2obl_A ESCN; ATPase, hydrolase 100.0 3.2E-40 1.1E-44 314.5 16.8 241 2-266 16-270 (347)
18 2dpy_A FLII, flagellum-specifi 100.0 5.7E-35 2E-39 286.1 17.7 243 2-265 103-358 (438)
19 2zts_A Putative uncharacterize 98.0 2.5E-05 8.5E-10 67.7 10.5 65 39-117 8-74 (251)
20 1n0w_A DNA repair protein RAD5 98.0 2.4E-05 8.2E-10 67.8 8.6 43 41-85 4-48 (243)
21 2w0m_A SSO2452; RECA, SSPF, un 97.9 2.6E-05 8.8E-10 66.7 8.6 41 46-86 6-48 (235)
22 3io5_A Recombination and repai 97.9 1.5E-05 5.2E-10 75.3 6.7 108 46-180 8-124 (333)
23 3hr8_A Protein RECA; alpha and 97.9 2.2E-05 7.5E-10 74.8 7.9 109 41-180 40-152 (356)
24 2zr9_A Protein RECA, recombina 97.9 2.6E-05 8.9E-10 73.7 8.2 109 41-180 40-152 (349)
25 2cvh_A DNA repair and recombin 97.9 2.8E-05 9.7E-10 66.3 7.3 38 46-83 3-42 (220)
26 1u94_A RECA protein, recombina 97.8 3.6E-05 1.2E-09 73.1 8.4 110 40-180 41-154 (356)
27 4a74_A DNA repair and recombin 97.8 4.3E-05 1.5E-09 65.5 8.1 40 46-85 8-49 (231)
28 2z43_A DNA repair and recombin 97.8 6.8E-05 2.3E-09 69.5 9.5 127 40-182 86-218 (324)
29 3cmu_A Protein RECA, recombina 97.8 4E-05 1.4E-09 86.7 8.7 112 38-180 1403-1518(2050)
30 1xp8_A RECA protein, recombina 97.8 4.2E-05 1.4E-09 73.0 7.3 110 40-180 52-165 (366)
31 3cmu_A Protein RECA, recombina 97.7 9.7E-05 3.3E-09 83.6 10.2 109 40-179 1059-1171(2050)
32 3cmw_A Protein RECA, recombina 97.6 8E-05 2.7E-09 83.2 7.7 115 39-183 11-128 (1706)
33 1v5w_A DMC1, meiotic recombina 97.6 0.0003 1E-08 65.8 10.2 45 40-86 101-147 (343)
34 2i1q_A DNA repair and recombin 97.6 0.00021 7.3E-09 65.6 8.8 45 40-86 77-123 (322)
35 3ec2_A DNA replication protein 97.5 2.3E-05 7.9E-10 65.6 1.8 30 57-86 34-63 (180)
36 2ehv_A Hypothetical protein PH 97.5 8.2E-05 2.8E-09 64.5 5.0 39 46-84 13-53 (251)
37 2dr3_A UPF0273 protein PH0284; 97.4 0.00011 3.7E-09 63.6 5.0 41 46-86 6-48 (247)
38 1pzn_A RAD51, DNA repair and r 97.4 0.00034 1.2E-08 65.8 8.6 45 40-86 110-156 (349)
39 3bh0_A DNAB-like replicative h 97.4 0.00091 3.1E-08 61.7 11.1 45 41-87 49-94 (315)
40 2kjq_A DNAA-related protein; s 97.4 0.00013 4.3E-09 60.5 4.5 27 60-86 35-61 (149)
41 3lda_A DNA repair protein RAD5 97.4 0.00042 1.4E-08 66.8 8.3 45 40-86 157-203 (400)
42 1nlf_A Regulatory protein REPA 97.3 0.00011 3.9E-09 66.0 2.9 52 33-86 3-55 (279)
43 2v1u_A Cell division control p 97.2 0.00084 2.9E-08 61.5 8.0 101 59-182 42-145 (387)
44 3gqb_A V-type ATP synthase alp 97.2 7.7E-05 2.7E-09 74.9 1.0 62 229-290 319-391 (578)
45 1fnn_A CDC6P, cell division co 97.2 0.002 6.8E-08 59.2 10.2 28 59-86 40-69 (389)
46 3vr4_A V-type sodium ATPase ca 97.1 7.7E-05 2.6E-09 75.2 0.5 61 230-290 331-404 (600)
47 3cmw_A Protein RECA, recombina 97.1 0.00093 3.2E-08 74.7 8.5 110 40-180 361-474 (1706)
48 2qby_A CDC6 homolog 1, cell di 97.1 0.0012 4.2E-08 60.2 8.0 28 59-86 43-70 (386)
49 1w5s_A Origin recognition comp 97.0 0.0021 7.2E-08 59.7 9.4 101 60-180 49-151 (412)
50 3mfy_A V-type ATP synthase alp 97.0 0.0001 3.6E-09 74.1 0.3 61 230-290 326-399 (588)
51 2r6a_A DNAB helicase, replicat 97.0 0.0025 8.4E-08 61.7 9.4 41 46-86 187-228 (454)
52 1l8q_A Chromosomal replication 96.9 0.0008 2.7E-08 61.4 5.3 27 60-86 36-62 (324)
53 2c61_A A-type ATP synthase non 96.9 0.00024 8.3E-09 70.0 1.6 61 230-290 251-319 (469)
54 2q6t_A DNAB replication FORK h 96.9 0.0024 8.2E-08 61.6 8.4 41 46-86 184-225 (444)
55 1jbk_A CLPB protein; beta barr 96.9 0.0018 6.3E-08 52.5 6.5 28 59-86 41-68 (195)
56 1zp6_A Hypothetical protein AT 96.9 0.00054 1.8E-08 57.3 3.2 30 55-84 3-32 (191)
57 4a1f_A DNAB helicase, replicat 96.8 0.0077 2.6E-07 56.8 11.1 42 46-87 30-72 (338)
58 3h4m_A Proteasome-activating n 96.8 0.0041 1.4E-07 55.3 8.7 28 59-86 49-76 (285)
59 4eun_A Thermoresistant glucoki 96.7 0.00095 3.3E-08 56.9 3.8 41 46-86 14-54 (200)
60 3vr4_D V-type sodium ATPase su 96.7 0.00028 9.6E-09 69.4 0.5 61 230-290 250-318 (465)
61 1q57_A DNA primase/helicase; d 96.7 0.0043 1.5E-07 60.6 9.0 42 46-87 225-268 (503)
62 3gqb_B V-type ATP synthase bet 96.7 0.00036 1.2E-08 68.6 1.2 61 230-290 253-321 (464)
63 2qgz_A Helicase loader, putati 96.7 0.00035 1.2E-08 64.5 1.1 27 60-86 151-177 (308)
64 1cr0_A DNA primase/helicase; R 96.7 0.00073 2.5E-08 61.0 3.1 41 46-86 18-60 (296)
65 1d2n_A N-ethylmaleimide-sensit 96.7 0.0087 3E-07 53.1 10.1 27 60-86 63-89 (272)
66 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0026 9E-08 60.0 5.7 40 46-85 107-147 (331)
67 2w58_A DNAI, primosome compone 96.5 0.00077 2.6E-08 57.0 1.9 25 62-86 55-79 (202)
68 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0096 3.3E-07 51.8 8.5 27 60-86 38-64 (262)
69 1znw_A Guanylate kinase, GMP k 96.4 0.0017 5.7E-08 55.7 3.5 30 56-85 15-44 (207)
70 3tr0_A Guanylate kinase, GMP k 96.4 0.0018 6.3E-08 54.5 3.7 28 58-85 4-31 (205)
71 3syl_A Protein CBBX; photosynt 96.4 0.0047 1.6E-07 55.4 6.5 28 59-86 65-92 (309)
72 3bos_A Putative DNA replicatio 96.4 0.011 3.7E-07 50.2 8.5 36 51-86 42-77 (242)
73 2z4s_A Chromosomal replication 96.4 0.0025 8.6E-08 61.6 5.0 26 61-86 130-155 (440)
74 3pvs_A Replication-associated 96.4 0.0095 3.3E-07 57.9 9.0 31 56-86 45-75 (447)
75 1z6g_A Guanylate kinase; struc 96.4 0.0019 6.4E-08 56.3 3.3 30 56-85 18-47 (218)
76 3b9p_A CG5977-PA, isoform A; A 96.3 0.013 4.6E-07 52.2 8.8 27 60-86 53-79 (297)
77 1htw_A HI0065; nucleotide-bind 96.2 0.0027 9.2E-08 53.2 3.4 30 56-85 28-57 (158)
78 3vaa_A Shikimate kinase, SK; s 96.2 0.0032 1.1E-07 53.5 3.8 31 57-87 21-51 (199)
79 2j41_A Guanylate kinase; GMP, 96.2 0.0031 1.1E-07 53.0 3.7 29 57-85 2-30 (207)
80 3c8u_A Fructokinase; YP_612366 96.2 0.0029 1E-07 54.2 3.5 28 58-85 19-46 (208)
81 3tif_A Uncharacterized ABC tra 96.1 0.0026 8.8E-08 56.4 3.1 32 54-85 24-55 (235)
82 3te6_A Regulatory protein SIR3 96.1 0.02 6.8E-07 53.5 9.2 98 58-180 42-145 (318)
83 2pcj_A ABC transporter, lipopr 96.1 0.0028 9.4E-08 55.8 3.0 31 54-84 23-53 (224)
84 2cbz_A Multidrug resistance-as 96.1 0.003 1E-07 56.1 3.1 30 56-85 26-55 (237)
85 2v9p_A Replication protein E1; 96.1 0.0028 9.6E-08 59.0 3.0 33 53-85 118-150 (305)
86 2a5y_B CED-4; apoptosis; HET: 96.0 0.021 7E-07 56.3 9.2 42 61-114 152-196 (549)
87 1b0u_A Histidine permease; ABC 96.0 0.0035 1.2E-07 56.5 3.2 30 55-84 26-55 (262)
88 2zu0_C Probable ATP-dependent 96.0 0.0042 1.4E-07 56.2 3.7 30 55-84 40-69 (267)
89 2ff7_A Alpha-hemolysin translo 96.0 0.0033 1.1E-07 56.2 2.9 32 54-85 28-59 (247)
90 3bgw_A DNAB-like replicative h 96.0 0.0061 2.1E-07 59.2 5.0 42 46-87 181-223 (444)
91 1kgd_A CASK, peripheral plasma 96.0 0.0047 1.6E-07 51.8 3.7 26 60-85 4-29 (180)
92 4g1u_C Hemin import ATP-bindin 95.9 0.0035 1.2E-07 56.8 3.1 30 56-85 32-61 (266)
93 2d2e_A SUFC protein; ABC-ATPas 95.9 0.0041 1.4E-07 55.6 3.5 30 55-84 23-52 (250)
94 1lvg_A Guanylate kinase, GMP k 95.9 0.0038 1.3E-07 53.4 3.1 27 59-85 2-28 (198)
95 3eie_A Vacuolar protein sortin 95.9 0.014 4.7E-07 53.5 7.1 26 61-86 51-76 (322)
96 4gp7_A Metallophosphoesterase; 95.9 0.0038 1.3E-07 52.1 3.0 25 56-80 4-28 (171)
97 1knq_A Gluconate kinase; ALFA/ 95.9 0.0043 1.5E-07 51.1 3.3 29 59-87 6-34 (175)
98 3gfo_A Cobalt import ATP-bindi 95.9 0.0036 1.2E-07 57.2 3.0 31 55-85 28-58 (275)
99 1g6h_A High-affinity branched- 95.9 0.0037 1.2E-07 56.1 3.0 31 55-85 27-57 (257)
100 2pze_A Cystic fibrosis transme 95.9 0.0037 1.3E-07 55.1 3.0 31 55-85 28-58 (229)
101 1vpl_A ABC transporter, ATP-bi 95.9 0.0039 1.3E-07 56.2 3.2 31 55-85 35-65 (256)
102 2olj_A Amino acid ABC transpor 95.9 0.004 1.4E-07 56.5 3.2 32 54-85 43-74 (263)
103 1mv5_A LMRA, multidrug resista 95.9 0.0038 1.3E-07 55.5 3.0 31 55-85 22-52 (243)
104 1sgw_A Putative ABC transporte 95.9 0.0036 1.2E-07 55.0 2.8 29 56-84 30-58 (214)
105 1ji0_A ABC transporter; ATP bi 95.9 0.0038 1.3E-07 55.4 2.9 29 56-84 27-55 (240)
106 3vfd_A Spastin; ATPase, microt 95.9 0.027 9.2E-07 52.9 8.9 27 60-86 147-173 (389)
107 3d8b_A Fidgetin-like protein 1 95.9 0.022 7.6E-07 53.1 8.2 27 60-86 116-142 (357)
108 2ixe_A Antigen peptide transpo 95.8 0.0042 1.4E-07 56.4 3.1 31 55-85 39-69 (271)
109 2ghi_A Transport protein; mult 95.8 0.0042 1.5E-07 55.9 3.1 30 56-85 41-70 (260)
110 2qby_B CDC6 homolog 3, cell di 95.8 0.0093 3.2E-07 54.8 5.5 27 59-85 43-69 (384)
111 2ihy_A ABC transporter, ATP-bi 95.8 0.0041 1.4E-07 56.8 3.0 32 54-85 40-71 (279)
112 3fvq_A Fe(3+) IONS import ATP- 95.8 0.0048 1.6E-07 58.7 3.6 32 53-84 22-53 (359)
113 2qi9_C Vitamin B12 import ATP- 95.8 0.0043 1.5E-07 55.7 3.0 32 54-85 19-50 (249)
114 2yz2_A Putative ABC transporte 95.8 0.0045 1.5E-07 55.9 3.1 30 55-84 27-56 (266)
115 3lnc_A Guanylate kinase, GMP k 95.8 0.0034 1.2E-07 54.5 2.3 37 47-85 15-52 (231)
116 2jeo_A Uridine-cytidine kinase 95.8 0.005 1.7E-07 54.2 3.3 31 56-86 20-50 (245)
117 2nq2_C Hypothetical ABC transp 95.8 0.0044 1.5E-07 55.6 2.9 30 56-85 26-55 (253)
118 1y63_A LMAJ004144AAA protein; 95.8 0.0066 2.3E-07 50.9 3.9 30 57-86 6-36 (184)
119 1hqc_A RUVB; extended AAA-ATPa 95.8 0.013 4.5E-07 52.7 6.0 26 61-86 38-63 (324)
120 1kag_A SKI, shikimate kinase I 95.7 0.0067 2.3E-07 49.6 3.6 27 60-86 3-29 (173)
121 3asz_A Uridine kinase; cytidin 95.7 0.0056 1.9E-07 52.0 3.2 29 58-86 3-31 (211)
122 1fx0_B ATP synthase beta chain 95.7 0.0021 7.1E-08 63.8 0.5 60 229-290 267-334 (498)
123 1zu4_A FTSY; GTPase, signal re 95.7 0.086 2.9E-06 48.9 11.5 31 56-86 100-130 (320)
124 2b8t_A Thymidine kinase; deoxy 95.7 0.016 5.6E-07 51.3 6.2 127 59-218 10-147 (223)
125 1tf7_A KAIC; homohexamer, hexa 95.7 0.0049 1.7E-07 60.7 3.1 37 46-82 22-60 (525)
126 3rlf_A Maltose/maltodextrin im 95.7 0.0063 2.2E-07 58.3 3.7 32 54-85 22-53 (381)
127 2yyz_A Sugar ABC transporter, 95.7 0.0064 2.2E-07 57.7 3.6 32 53-84 21-52 (359)
128 1ixz_A ATP-dependent metallopr 95.6 0.006 2.1E-07 53.5 3.2 28 57-86 47-74 (254)
129 1z47_A CYSA, putative ABC-tran 95.6 0.0061 2.1E-07 57.8 3.5 32 53-84 33-64 (355)
130 1v43_A Sugar-binding transport 95.6 0.0065 2.2E-07 58.0 3.7 32 53-84 29-60 (372)
131 4b4t_J 26S protease regulatory 95.6 0.02 6.7E-07 55.4 7.1 25 63-87 184-208 (405)
132 2it1_A 362AA long hypothetical 95.6 0.0066 2.2E-07 57.7 3.7 32 53-84 21-52 (362)
133 2qt1_A Nicotinamide riboside k 95.6 0.0058 2E-07 51.9 3.0 31 55-85 15-45 (207)
134 3b85_A Phosphate starvation-in 95.6 0.0047 1.6E-07 53.9 2.4 27 58-84 19-45 (208)
135 2x8a_A Nuclear valosin-contain 95.6 0.0064 2.2E-07 55.0 3.3 28 57-86 42-69 (274)
136 4b4t_K 26S protease regulatory 95.6 0.018 6.2E-07 55.9 6.6 23 64-86 209-231 (428)
137 1g29_1 MALK, maltose transport 95.6 0.0068 2.3E-07 57.8 3.5 32 53-84 21-52 (372)
138 2i3b_A HCR-ntpase, human cance 95.6 0.0075 2.6E-07 51.8 3.4 25 61-85 1-25 (189)
139 4b4t_L 26S protease subunit RP 95.5 0.023 7.7E-07 55.4 7.2 26 62-87 216-241 (437)
140 3bs4_A Uncharacterized protein 95.5 0.027 9.3E-07 51.2 7.3 59 46-117 4-64 (260)
141 1pui_A ENGB, probable GTP-bind 95.5 0.0036 1.2E-07 52.6 1.2 28 56-83 21-48 (210)
142 3gd7_A Fusion complex of cysti 95.5 0.0074 2.5E-07 57.9 3.6 30 55-84 41-70 (390)
143 4b4t_M 26S protease regulatory 95.5 0.018 6E-07 56.1 6.2 26 62-87 216-241 (434)
144 2eyu_A Twitching motility prot 95.5 0.0061 2.1E-07 55.0 2.6 34 51-85 16-49 (261)
145 2bbs_A Cystic fibrosis transme 95.4 0.0071 2.4E-07 55.6 3.0 31 55-85 58-88 (290)
146 3d31_A Sulfate/molybdate ABC t 95.4 0.0056 1.9E-07 57.9 2.4 32 53-84 18-49 (348)
147 2qor_A Guanylate kinase; phosp 95.4 0.01 3.5E-07 50.5 3.7 28 58-85 9-36 (204)
148 2p65_A Hypothetical protein PF 95.4 0.0082 2.8E-07 48.7 3.0 28 59-86 41-68 (187)
149 3tui_C Methionine import ATP-b 95.4 0.0092 3.2E-07 56.9 3.7 35 50-84 42-77 (366)
150 2pjz_A Hypothetical protein ST 95.4 0.008 2.7E-07 54.4 3.1 28 56-84 26-53 (263)
151 1z6t_A APAF-1, apoptotic prote 95.4 0.045 1.6E-06 53.6 8.7 26 59-84 145-170 (591)
152 1g5t_A COB(I)alamin adenosyltr 95.3 0.049 1.7E-06 47.6 7.9 107 51-178 19-131 (196)
153 3uie_A Adenylyl-sulfate kinase 95.3 0.01 3.5E-07 50.4 3.4 27 59-85 23-49 (200)
154 1iy2_A ATP-dependent metallopr 95.3 0.009 3.1E-07 53.3 3.2 28 57-86 71-98 (278)
155 3ney_A 55 kDa erythrocyte memb 95.3 0.012 4.1E-07 51.3 3.9 30 56-85 14-43 (197)
156 1ye8_A Protein THEP1, hypothet 95.3 0.01 3.5E-07 50.4 3.3 25 62-86 1-25 (178)
157 3nh6_A ATP-binding cassette SU 95.3 0.005 1.7E-07 57.2 1.4 31 55-85 74-104 (306)
158 3cf0_A Transitional endoplasmi 95.3 0.05 1.7E-06 49.3 8.1 29 58-86 46-74 (301)
159 3cm0_A Adenylate kinase; ATP-b 95.3 0.0096 3.3E-07 49.3 3.0 27 60-86 3-29 (186)
160 2bbw_A Adenylate kinase 4, AK4 95.2 0.012 4.1E-07 51.6 3.7 27 60-86 26-52 (246)
161 3tau_A Guanylate kinase, GMP k 95.2 0.012 4.1E-07 50.5 3.6 27 59-85 6-32 (208)
162 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.055 1.9E-06 49.8 8.3 25 61-85 45-69 (322)
163 2yhs_A FTSY, cell division pro 95.2 0.069 2.4E-06 53.0 9.5 31 56-86 288-318 (503)
164 1s96_A Guanylate kinase, GMP k 95.2 0.012 4.1E-07 51.7 3.6 28 58-85 13-40 (219)
165 3a00_A Guanylate kinase, GMP k 95.2 0.011 3.6E-07 49.8 3.1 25 61-85 1-25 (186)
166 1oxx_K GLCV, glucose, ABC tran 95.2 0.0057 2E-07 57.8 1.6 31 54-84 24-54 (353)
167 3aez_A Pantothenate kinase; tr 95.2 0.012 4E-07 54.6 3.6 30 57-86 86-115 (312)
168 2qp9_X Vacuolar protein sortin 95.2 0.076 2.6E-06 49.5 9.2 26 61-86 84-109 (355)
169 3pfi_A Holliday junction ATP-d 95.2 0.052 1.8E-06 49.3 7.9 25 62-86 56-80 (338)
170 2bdt_A BH3686; alpha-beta prot 95.1 0.0094 3.2E-07 49.8 2.7 24 61-84 2-25 (189)
171 4b4t_I 26S protease regulatory 95.1 0.032 1.1E-06 54.5 6.7 25 63-87 218-242 (437)
172 3iij_A Coilin-interacting nucl 95.0 0.016 5.3E-07 48.0 3.7 29 59-87 9-37 (180)
173 1cke_A CK, MSSA, protein (cyti 95.0 0.015 5.1E-07 49.6 3.7 27 60-86 4-30 (227)
174 2ck3_D ATP synthase subunit be 95.0 0.0054 1.8E-07 60.6 0.9 59 230-290 255-321 (482)
175 3dm5_A SRP54, signal recogniti 95.0 0.11 3.8E-06 50.7 10.0 28 59-86 98-125 (443)
176 2onk_A Molybdate/tungstate ABC 95.0 0.015 5.2E-07 51.7 3.6 32 53-85 17-48 (240)
177 1kht_A Adenylate kinase; phosp 94.9 0.017 5.8E-07 47.6 3.7 27 60-86 2-28 (192)
178 1yqt_A RNAse L inhibitor; ATP- 94.9 0.017 5.7E-07 57.5 4.2 35 51-85 37-71 (538)
179 1zuh_A Shikimate kinase; alpha 94.9 0.018 6E-07 47.1 3.6 26 61-86 7-32 (168)
180 1c9k_A COBU, adenosylcobinamid 94.9 0.003 1E-07 54.5 -1.2 33 64-113 2-34 (180)
181 1sky_E F1-ATPase, F1-ATP synth 94.9 0.0065 2.2E-07 59.9 1.0 45 244-290 269-313 (473)
182 1lw7_A Transcriptional regulat 94.9 0.012 4E-07 55.1 2.7 29 58-86 165-195 (365)
183 4b4t_H 26S protease regulatory 94.8 0.047 1.6E-06 53.7 7.0 27 61-87 243-269 (467)
184 3e70_C DPA, signal recognition 94.8 0.2 6.9E-06 46.6 11.0 30 57-86 125-154 (328)
185 1t9h_A YLOQ, probable GTPase E 94.8 0.0057 1.9E-07 56.9 0.3 33 52-84 164-196 (307)
186 3b9q_A Chloroplast SRP recepto 94.8 0.019 6.4E-07 53.0 3.8 31 56-86 95-125 (302)
187 2qm8_A GTPase/ATPase; G protei 94.8 0.015 5.3E-07 54.2 3.3 31 55-85 49-79 (337)
188 2npi_A Protein CLP1; CLP1-PCF1 94.8 0.014 4.8E-07 57.1 3.1 32 54-85 131-162 (460)
189 1in4_A RUVB, holliday junction 94.8 0.05 1.7E-06 50.1 6.7 25 62-86 52-76 (334)
190 1qhx_A CPT, protein (chloramph 94.8 0.021 7.2E-07 46.8 3.7 26 61-86 3-28 (178)
191 3n70_A Transport activator; si 94.7 0.016 5.3E-07 46.9 2.8 27 59-85 22-48 (145)
192 1sq5_A Pantothenate kinase; P- 94.7 0.017 5.7E-07 52.9 3.4 29 57-85 76-104 (308)
193 2wwf_A Thymidilate kinase, put 94.7 0.021 7.1E-07 48.1 3.8 29 58-86 7-35 (212)
194 3t15_A Ribulose bisphosphate c 94.7 0.016 5.6E-07 52.6 3.3 24 63-86 38-61 (293)
195 1tf7_A KAIC; homohexamer, hexa 94.7 0.023 7.8E-07 55.9 4.5 41 46-86 264-306 (525)
196 1vt4_I APAF-1 related killer D 94.7 0.042 1.4E-06 59.4 6.8 24 61-84 150-173 (1221)
197 4e22_A Cytidylate kinase; P-lo 94.7 0.021 7.1E-07 50.7 3.8 28 59-86 25-52 (252)
198 2chg_A Replication factor C sm 94.7 0.021 7.2E-07 47.2 3.5 26 60-85 37-62 (226)
199 3kl4_A SRP54, signal recogniti 94.7 0.25 8.6E-06 47.9 11.7 28 59-86 95-122 (433)
200 3zvl_A Bifunctional polynucleo 94.7 0.22 7.5E-06 47.5 11.1 28 60-87 257-284 (416)
201 3oaa_A ATP synthase subunit al 94.6 0.0083 2.9E-07 59.6 1.2 60 230-289 256-336 (513)
202 2yv5_A YJEQ protein; hydrolase 94.6 0.012 4.1E-07 54.0 2.1 33 52-85 156-188 (302)
203 3trf_A Shikimate kinase, SK; a 94.6 0.022 7.5E-07 47.1 3.6 27 61-87 5-31 (185)
204 3kb2_A SPBC2 prophage-derived 94.6 0.021 7.1E-07 46.2 3.2 24 63-86 3-26 (173)
205 1fx0_A ATP synthase alpha chai 94.6 0.02 6.9E-07 56.8 3.7 61 229-289 256-326 (507)
206 1rz3_A Hypothetical protein rb 94.5 0.022 7.6E-07 48.4 3.4 29 57-85 18-46 (201)
207 3j16_B RLI1P; ribosome recycli 94.5 0.024 8.2E-07 57.3 4.2 35 51-85 93-127 (608)
208 2fna_A Conserved hypothetical 94.5 0.015 5.1E-07 52.3 2.3 55 28-86 1-55 (357)
209 1rj9_A FTSY, signal recognitio 94.5 0.023 7.7E-07 52.5 3.6 28 59-86 100-127 (304)
210 1vma_A Cell division protein F 94.5 0.2 6.8E-06 46.2 10.0 30 57-86 100-129 (306)
211 2plr_A DTMP kinase, probable t 94.5 0.024 8.3E-07 47.4 3.5 27 60-86 3-29 (213)
212 3sfz_A APAF-1, apoptotic pepti 94.4 0.027 9.1E-07 59.2 4.5 24 62-85 148-171 (1249)
213 1nn5_A Similar to deoxythymidy 94.4 0.027 9.1E-07 47.4 3.7 29 58-86 6-34 (215)
214 3uk6_A RUVB-like 2; hexameric 94.4 0.024 8E-07 52.0 3.6 26 61-86 70-95 (368)
215 3t61_A Gluconokinase; PSI-biol 94.4 0.026 8.9E-07 47.6 3.6 28 61-88 18-45 (202)
216 2gj8_A MNME, tRNA modification 94.4 0.022 7.4E-07 46.8 2.9 25 60-84 3-27 (172)
217 2pez_A Bifunctional 3'-phospho 94.4 0.027 9.2E-07 46.6 3.5 26 60-85 4-29 (179)
218 3fb4_A Adenylate kinase; psych 94.3 0.025 8.5E-07 48.1 3.3 24 63-86 2-25 (216)
219 3dl0_A Adenylate kinase; phosp 94.3 0.025 8.6E-07 48.1 3.3 24 63-86 2-25 (216)
220 1zd8_A GTP:AMP phosphotransfer 94.3 0.027 9.1E-07 48.6 3.5 29 58-86 4-32 (227)
221 2rhm_A Putative kinase; P-loop 94.3 0.028 9.6E-07 46.5 3.5 28 59-86 3-30 (193)
222 3bk7_A ABC transporter ATP-bin 94.3 0.024 8.3E-07 57.2 3.7 35 51-85 107-141 (607)
223 3u61_B DNA polymerase accessor 94.3 0.052 1.8E-06 49.1 5.5 27 60-86 46-73 (324)
224 3hu3_A Transitional endoplasmi 94.2 0.065 2.2E-06 52.6 6.5 28 59-86 236-263 (489)
225 2c95_A Adenylate kinase 1; tra 94.2 0.03 1E-06 46.4 3.6 28 59-86 7-34 (196)
226 3nwj_A ATSK2; P loop, shikimat 94.2 0.019 6.3E-07 51.7 2.4 32 56-87 40-74 (250)
227 2r9v_A ATP synthase subunit al 94.2 0.016 5.3E-07 57.7 1.9 62 229-290 268-339 (515)
228 1tev_A UMP-CMP kinase; ploop, 94.2 0.03 1E-06 46.1 3.4 26 61-86 3-28 (196)
229 2r62_A Cell division protease 94.1 0.023 7.8E-07 49.9 2.8 24 63-86 46-69 (268)
230 2og2_A Putative signal recogni 94.1 0.031 1E-06 53.0 3.8 30 57-86 153-182 (359)
231 1lv7_A FTSH; alpha/beta domain 94.1 0.028 9.5E-07 49.3 3.3 24 63-86 47-70 (257)
232 1u0l_A Probable GTPase ENGC; p 94.1 0.013 4.4E-07 53.6 1.1 34 52-85 160-193 (301)
233 1ofh_A ATP-dependent HSL prote 94.1 0.03 1E-06 49.6 3.5 27 60-86 49-75 (310)
234 1aky_A Adenylate kinase; ATP:A 94.1 0.034 1.2E-06 47.6 3.7 27 60-86 3-29 (220)
235 4b3f_X DNA-binding protein smu 94.1 0.061 2.1E-06 54.1 6.1 24 63-86 207-230 (646)
236 1j8m_F SRP54, signal recogniti 94.1 0.15 5E-06 46.8 8.1 28 59-86 96-123 (297)
237 2qe7_A ATP synthase subunit al 94.1 0.018 6.3E-07 57.0 2.2 62 229-290 255-326 (502)
238 2yvu_A Probable adenylyl-sulfa 94.1 0.037 1.3E-06 46.0 3.8 30 57-86 9-38 (186)
239 2gza_A Type IV secretion syste 94.0 0.018 6.2E-07 54.2 2.0 30 56-85 170-199 (361)
240 2v54_A DTMP kinase, thymidylat 94.0 0.033 1.1E-06 46.6 3.4 26 60-85 3-28 (204)
241 1njg_A DNA polymerase III subu 94.0 0.036 1.2E-06 46.2 3.7 24 63-86 47-70 (250)
242 2vli_A Antibiotic resistance p 94.0 0.03 1E-06 46.0 3.0 27 60-86 4-30 (183)
243 3b5x_A Lipid A export ATP-bind 94.0 0.026 9.1E-07 56.2 3.1 31 55-85 363-393 (582)
244 1sxj_E Activator 1 40 kDa subu 94.0 0.03 1E-06 51.0 3.3 29 57-85 32-60 (354)
245 2iyv_A Shikimate kinase, SK; t 94.0 0.035 1.2E-06 45.9 3.4 27 61-87 2-28 (184)
246 1yqt_A RNAse L inhibitor; ATP- 94.0 0.028 9.5E-07 55.9 3.2 29 57-85 308-336 (538)
247 2cdn_A Adenylate kinase; phosp 93.9 0.04 1.4E-06 46.4 3.7 28 59-86 18-45 (201)
248 1ly1_A Polynucleotide kinase; 93.9 0.032 1.1E-06 45.4 3.0 21 63-83 4-24 (181)
249 1via_A Shikimate kinase; struc 93.9 0.034 1.2E-06 45.8 3.2 24 63-86 6-29 (175)
250 3be4_A Adenylate kinase; malar 93.9 0.037 1.3E-06 47.5 3.6 27 60-86 4-30 (217)
251 2bwj_A Adenylate kinase 5; pho 93.9 0.032 1.1E-06 46.3 3.1 29 58-86 9-37 (199)
252 3b60_A Lipid A export ATP-bind 93.9 0.025 8.5E-07 56.4 2.7 32 54-85 362-393 (582)
253 2jaq_A Deoxyguanosine kinase; 93.9 0.038 1.3E-06 45.9 3.5 24 63-86 2-25 (205)
254 2yl4_A ATP-binding cassette SU 93.8 0.025 8.5E-07 56.6 2.6 33 53-85 362-394 (595)
255 1gvn_B Zeta; postsegregational 93.8 0.037 1.3E-06 50.3 3.6 29 57-85 29-57 (287)
256 2if2_A Dephospho-COA kinase; a 93.8 0.034 1.2E-06 46.8 3.1 21 63-83 3-23 (204)
257 1svm_A Large T antigen; AAA+ f 93.8 0.03 1E-06 53.4 3.0 30 56-85 164-193 (377)
258 1nks_A Adenylate kinase; therm 93.8 0.038 1.3E-06 45.4 3.3 24 63-86 3-26 (194)
259 1oix_A RAS-related protein RAB 93.8 0.032 1.1E-06 46.6 2.8 23 63-85 31-53 (191)
260 2f9l_A RAB11B, member RAS onco 93.8 0.036 1.2E-06 46.3 3.1 23 63-85 7-29 (199)
261 2rcn_A Probable GTPase ENGC; Y 93.7 0.021 7.2E-07 54.2 1.9 34 52-85 206-239 (358)
262 3lw7_A Adenylate kinase relate 93.7 0.038 1.3E-06 44.2 3.2 22 63-85 3-24 (179)
263 2p5t_B PEZT; postsegregational 93.7 0.032 1.1E-06 49.3 2.9 30 57-86 28-57 (253)
264 1qvr_A CLPB protein; coiled co 93.7 0.13 4.6E-06 53.4 8.0 28 59-86 189-216 (854)
265 2ze6_A Isopentenyl transferase 93.6 0.041 1.4E-06 48.9 3.4 32 63-94 3-34 (253)
266 3qf4_B Uncharacterized ABC tra 93.6 0.029 9.8E-07 56.2 2.6 30 56-85 376-405 (598)
267 2ewv_A Twitching motility prot 93.6 0.039 1.3E-06 52.2 3.4 28 58-85 133-160 (372)
268 1m7g_A Adenylylsulfate kinase; 93.6 0.047 1.6E-06 46.5 3.6 28 58-85 22-49 (211)
269 1ak2_A Adenylate kinase isoenz 93.6 0.05 1.7E-06 47.2 3.8 27 60-86 15-41 (233)
270 3sr0_A Adenylate kinase; phosp 93.5 0.037 1.3E-06 48.1 3.0 24 63-86 2-25 (206)
271 2ck3_A ATP synthase subunit al 93.5 0.02 6.8E-07 56.9 1.3 62 229-290 263-334 (510)
272 1ukz_A Uridylate kinase; trans 93.5 0.051 1.7E-06 45.6 3.7 28 59-86 13-40 (203)
273 3bk7_A ABC transporter ATP-bin 93.5 0.037 1.3E-06 55.9 3.2 29 57-85 378-406 (607)
274 2r44_A Uncharacterized protein 93.5 0.028 9.7E-07 51.1 2.2 28 59-86 44-71 (331)
275 2qen_A Walker-type ATPase; unk 93.5 0.024 8.2E-07 50.9 1.7 25 61-85 31-55 (350)
276 3ozx_A RNAse L inhibitor; ATP 93.5 0.032 1.1E-06 55.5 2.7 30 56-85 289-318 (538)
277 3pxg_A Negative regulator of g 93.4 0.13 4.5E-06 49.8 6.9 28 59-86 199-226 (468)
278 1zak_A Adenylate kinase; ATP:A 93.4 0.047 1.6E-06 46.8 3.3 27 60-86 4-30 (222)
279 3kta_A Chromosome segregation 93.4 0.052 1.8E-06 44.8 3.4 31 54-85 20-50 (182)
280 2dyk_A GTP-binding protein; GT 93.3 0.044 1.5E-06 43.2 2.8 23 63-85 3-25 (161)
281 1kao_A RAP2A; GTP-binding prot 93.3 0.046 1.6E-06 43.1 2.9 23 63-85 5-27 (167)
282 1z2a_A RAS-related protein RAB 93.3 0.044 1.5E-06 43.4 2.8 23 63-85 7-29 (168)
283 1jjv_A Dephospho-COA kinase; P 93.2 0.046 1.6E-06 46.1 3.0 21 63-83 4-24 (206)
284 2zan_A Vacuolar protein sortin 93.2 0.21 7.1E-06 48.1 7.9 25 61-85 167-191 (444)
285 4a82_A Cystic fibrosis transme 93.2 0.023 7.9E-07 56.6 1.2 31 55-85 361-391 (578)
286 4eaq_A DTMP kinase, thymidylat 93.2 0.061 2.1E-06 47.1 3.8 30 57-86 22-51 (229)
287 2wji_A Ferrous iron transport 93.2 0.049 1.7E-06 44.1 3.0 23 62-84 4-26 (165)
288 3tlx_A Adenylate kinase 2; str 93.2 0.055 1.9E-06 47.6 3.5 28 59-86 27-54 (243)
289 3m6a_A ATP-dependent protease 93.2 0.05 1.7E-06 53.9 3.6 30 57-86 104-133 (543)
290 2pt7_A CAG-ALFA; ATPase, prote 93.1 0.022 7.4E-07 53.1 0.8 30 56-85 166-195 (330)
291 2iw3_A Elongation factor 3A; a 93.1 0.047 1.6E-06 58.3 3.5 30 54-83 454-483 (986)
292 1r8s_A ADP-ribosylation factor 93.1 0.058 2E-06 42.8 3.3 23 63-85 2-24 (164)
293 2ce2_X GTPase HRAS; signaling 93.1 0.048 1.6E-06 42.8 2.7 23 63-85 5-27 (166)
294 1ypw_A Transitional endoplasmi 93.1 0.14 4.9E-06 53.1 7.0 29 58-86 235-263 (806)
295 2vp4_A Deoxynucleoside kinase; 93.1 0.034 1.2E-06 48.4 1.9 28 57-84 16-43 (230)
296 2dhr_A FTSH; AAA+ protein, hex 93.1 0.046 1.6E-06 54.0 3.1 27 58-86 63-89 (499)
297 2qag_B Septin-6, protein NEDD5 93.1 0.049 1.7E-06 52.9 3.2 29 56-84 35-65 (427)
298 2bjv_A PSP operon transcriptio 93.1 0.088 3E-06 46.2 4.7 27 60-86 28-54 (265)
299 1q3t_A Cytidylate kinase; nucl 93.1 0.066 2.2E-06 46.5 3.8 28 59-86 14-41 (236)
300 2zej_A Dardarin, leucine-rich 93.0 0.045 1.5E-06 45.1 2.5 21 63-83 4-24 (184)
301 3hws_A ATP-dependent CLP prote 93.0 0.059 2E-06 49.9 3.6 27 60-86 50-76 (363)
302 2c9o_A RUVB-like 1; hexameric 93.0 0.062 2.1E-06 51.8 3.8 27 60-86 62-88 (456)
303 1ls1_A Signal recognition part 93.0 0.41 1.4E-05 43.6 9.1 27 60-86 97-123 (295)
304 1u8z_A RAS-related protein RAL 93.0 0.054 1.8E-06 42.7 2.8 23 63-85 6-28 (168)
305 2pt5_A Shikimate kinase, SK; a 93.0 0.065 2.2E-06 43.3 3.4 24 63-86 2-25 (168)
306 1e6c_A Shikimate kinase; phosp 93.0 0.062 2.1E-06 43.6 3.3 26 62-87 3-28 (173)
307 1ek0_A Protein (GTP-binding pr 92.9 0.054 1.8E-06 42.9 2.8 23 63-85 5-27 (170)
308 1odf_A YGR205W, hypothetical 3 92.9 0.06 2E-06 49.3 3.4 29 58-86 28-56 (290)
309 2ffh_A Protein (FFH); SRP54, s 92.9 0.39 1.3E-05 46.5 9.3 27 60-86 97-123 (425)
310 1z08_A RAS-related protein RAB 92.9 0.056 1.9E-06 43.1 2.9 23 63-85 8-30 (170)
311 3qf4_A ABC transporter, ATP-bi 92.9 0.032 1.1E-06 55.9 1.7 31 55-85 363-393 (587)
312 1tue_A Replication protein E1; 92.9 0.055 1.9E-06 47.9 3.0 28 58-85 55-82 (212)
313 2nzj_A GTP-binding protein REM 92.9 0.06 2.1E-06 43.1 3.0 22 63-84 6-27 (175)
314 1e4v_A Adenylate kinase; trans 92.9 0.061 2.1E-06 45.9 3.2 24 63-86 2-25 (214)
315 1c1y_A RAS-related protein RAP 92.7 0.06 2E-06 42.6 2.8 23 63-85 5-27 (167)
316 1g16_A RAS-related protein SEC 92.7 0.058 2E-06 42.9 2.7 23 63-85 5-27 (170)
317 2chq_A Replication factor C sm 92.7 0.081 2.8E-06 46.9 3.9 27 59-85 36-62 (319)
318 1wms_A RAB-9, RAB9, RAS-relate 92.7 0.062 2.1E-06 43.2 2.9 23 63-85 9-31 (177)
319 2wjg_A FEOB, ferrous iron tran 92.7 0.063 2.2E-06 43.8 3.0 23 62-84 8-30 (188)
320 1r2q_A RAS-related protein RAB 92.7 0.062 2.1E-06 42.5 2.8 23 63-85 8-30 (170)
321 1qf9_A UMP/CMP kinase, protein 92.7 0.073 2.5E-06 43.6 3.3 26 61-86 6-31 (194)
322 4fcw_A Chaperone protein CLPB; 92.7 0.064 2.2E-06 47.8 3.2 25 62-86 48-72 (311)
323 2pbr_A DTMP kinase, thymidylat 92.6 0.074 2.5E-06 43.7 3.4 23 63-85 2-24 (195)
324 1z0j_A RAB-22, RAS-related pro 92.6 0.065 2.2E-06 42.6 2.9 23 63-85 8-30 (170)
325 1um8_A ATP-dependent CLP prote 92.6 0.071 2.4E-06 49.5 3.6 26 61-86 72-97 (376)
326 3r20_A Cytidylate kinase; stru 92.6 0.073 2.5E-06 47.4 3.5 25 62-86 10-34 (233)
327 2ce7_A Cell division protein F 92.6 0.063 2.2E-06 52.7 3.3 24 64-87 52-75 (476)
328 3sop_A Neuronal-specific septi 92.6 0.064 2.2E-06 48.4 3.2 23 63-85 4-26 (270)
329 3jvv_A Twitching mobility prot 92.6 0.066 2.2E-06 50.5 3.3 29 58-86 120-148 (356)
330 3co5_A Putative two-component 92.6 0.021 7.2E-07 46.1 -0.1 26 60-85 26-51 (143)
331 1ky3_A GTP-binding protein YPT 92.5 0.067 2.3E-06 43.0 2.9 23 63-85 10-32 (182)
332 1uf9_A TT1252 protein; P-loop, 92.5 0.079 2.7E-06 44.1 3.4 25 60-84 7-31 (203)
333 3bc1_A RAS-related protein RAB 92.5 0.066 2.3E-06 43.4 2.8 23 63-85 13-35 (195)
334 3umf_A Adenylate kinase; rossm 92.5 0.074 2.5E-06 46.8 3.3 29 59-87 27-55 (217)
335 2fn4_A P23, RAS-related protei 92.5 0.066 2.3E-06 43.0 2.8 24 62-85 10-33 (181)
336 3cf2_A TER ATPase, transitiona 92.5 0.17 5.7E-06 53.0 6.4 24 63-86 240-263 (806)
337 2orw_A Thymidine kinase; TMTK, 92.5 0.086 2.9E-06 44.7 3.6 26 60-85 2-27 (184)
338 2ged_A SR-beta, signal recogni 92.5 0.068 2.3E-06 43.9 2.9 25 61-85 48-72 (193)
339 1ni3_A YCHF GTPase, YCHF GTP-b 92.5 0.08 2.7E-06 50.8 3.8 28 57-84 16-43 (392)
340 1g8p_A Magnesium-chelatase 38 92.5 0.048 1.6E-06 49.4 2.1 26 61-86 45-70 (350)
341 1sxj_D Activator 1 41 kDa subu 92.4 0.078 2.7E-06 47.9 3.5 25 62-86 59-83 (353)
342 2z0h_A DTMP kinase, thymidylat 92.4 0.074 2.5E-06 44.0 3.1 23 63-85 2-24 (197)
343 3q85_A GTP-binding protein REM 92.4 0.073 2.5E-06 42.4 3.0 21 63-83 4-24 (169)
344 2hxs_A RAB-26, RAS-related pro 92.4 0.068 2.3E-06 43.0 2.8 23 63-85 8-30 (178)
345 3ozx_A RNAse L inhibitor; ATP 92.4 0.06 2E-06 53.6 2.9 30 56-85 20-49 (538)
346 4dsu_A GTPase KRAS, isoform 2B 92.4 0.071 2.4E-06 43.2 2.9 23 63-85 6-28 (189)
347 2px0_A Flagellar biosynthesis 92.4 0.08 2.7E-06 48.5 3.5 29 58-86 102-130 (296)
348 1upt_A ARL1, ADP-ribosylation 92.3 0.072 2.5E-06 42.4 2.8 26 60-85 6-31 (171)
349 1z0f_A RAB14, member RAS oncog 92.3 0.073 2.5E-06 42.6 2.8 23 63-85 17-39 (179)
350 2erx_A GTP-binding protein DI- 92.3 0.08 2.7E-06 42.0 3.0 23 62-84 4-26 (172)
351 3a4m_A L-seryl-tRNA(SEC) kinas 92.2 0.086 3E-06 46.7 3.5 26 59-84 2-27 (260)
352 3q72_A GTP-binding protein RAD 92.2 0.073 2.5E-06 42.3 2.7 20 63-82 4-23 (166)
353 3ihw_A Centg3; RAS, centaurin, 92.2 0.077 2.6E-06 43.9 2.9 23 63-85 22-44 (184)
354 2y8e_A RAB-protein 6, GH09086P 92.2 0.074 2.5E-06 42.6 2.7 23 63-85 16-38 (179)
355 1m2o_B GTP-binding protein SAR 92.2 0.075 2.6E-06 44.2 2.8 26 60-85 22-47 (190)
356 1sxj_C Activator 1 40 kDa subu 92.2 0.072 2.5E-06 48.8 3.0 55 32-86 13-71 (340)
357 3clv_A RAB5 protein, putative; 92.2 0.078 2.7E-06 43.1 2.9 23 63-85 9-31 (208)
358 1ex7_A Guanylate kinase; subst 92.2 0.084 2.9E-06 45.4 3.2 22 64-85 4-25 (186)
359 2fz4_A DNA repair protein RAD2 92.1 0.47 1.6E-05 41.4 8.1 28 58-85 105-132 (237)
360 2oap_1 GSPE-2, type II secreti 92.1 0.051 1.7E-06 53.8 1.9 30 56-85 255-284 (511)
361 3con_A GTPase NRAS; structural 92.1 0.079 2.7E-06 43.4 2.8 23 63-85 23-45 (190)
362 2efe_B Small GTP-binding prote 92.0 0.083 2.8E-06 42.6 2.9 23 63-85 14-36 (181)
363 2a9k_A RAS-related protein RAL 92.0 0.082 2.8E-06 42.6 2.8 23 63-85 20-42 (187)
364 2bme_A RAB4A, RAS-related prot 92.0 0.079 2.7E-06 43.0 2.7 23 63-85 12-34 (186)
365 3kkq_A RAS-related protein M-R 92.0 0.082 2.8E-06 42.9 2.8 23 63-85 20-42 (183)
366 1mh1_A RAC1; GTP-binding, GTPa 92.0 0.083 2.8E-06 42.7 2.8 23 63-85 7-29 (186)
367 2iwr_A Centaurin gamma 1; ANK 92.0 0.061 2.1E-06 43.5 2.0 23 63-85 9-31 (178)
368 1iqp_A RFCS; clamp loader, ext 92.0 0.11 3.6E-06 46.3 3.8 27 59-85 44-70 (327)
369 3dz8_A RAS-related protein RAB 92.0 0.094 3.2E-06 43.2 3.2 23 63-85 25-47 (191)
370 2oil_A CATX-8, RAS-related pro 92.0 0.083 2.8E-06 43.5 2.8 23 63-85 27-49 (193)
371 1m7b_A RND3/RHOE small GTP-bin 92.0 0.08 2.7E-06 43.4 2.7 23 63-85 9-31 (184)
372 4f4c_A Multidrug resistance pr 91.9 0.052 1.8E-06 59.4 2.0 32 54-85 1098-1129(1321)
373 3gmt_A Adenylate kinase; ssgci 91.9 0.072 2.5E-06 47.5 2.5 26 62-87 9-34 (230)
374 3bwd_D RAC-like GTP-binding pr 91.9 0.087 3E-06 42.5 2.8 24 62-85 9-32 (182)
375 2g6b_A RAS-related protein RAB 91.9 0.088 3E-06 42.4 2.8 23 63-85 12-34 (180)
376 1nrj_B SR-beta, signal recogni 91.9 0.084 2.9E-06 44.4 2.8 24 62-85 13-36 (218)
377 1tq4_A IIGP1, interferon-induc 91.8 0.061 2.1E-06 51.9 2.1 21 63-83 71-91 (413)
378 3c5c_A RAS-like protein 12; GD 91.8 0.09 3.1E-06 43.5 2.9 23 63-85 23-45 (187)
379 2xb4_A Adenylate kinase; ATP-b 91.8 0.1 3.6E-06 45.0 3.4 24 63-86 2-25 (223)
380 3ux8_A Excinuclease ABC, A sub 91.8 0.053 1.8E-06 54.9 1.7 28 55-82 342-369 (670)
381 3k1j_A LON protease, ATP-depen 91.7 0.08 2.7E-06 53.0 2.9 30 57-86 56-85 (604)
382 3tkl_A RAS-related protein RAB 91.7 0.092 3.2E-06 43.0 2.8 23 63-85 18-40 (196)
383 2gf9_A RAS-related protein RAB 91.7 0.093 3.2E-06 43.1 2.8 23 63-85 24-46 (189)
384 3ux8_A Excinuclease ABC, A sub 91.7 0.073 2.5E-06 53.9 2.6 24 55-78 38-61 (670)
385 2cxx_A Probable GTP-binding pr 91.6 0.09 3.1E-06 42.7 2.7 23 63-85 3-25 (190)
386 2p67_A LAO/AO transport system 91.6 0.1 3.5E-06 48.4 3.4 30 56-85 51-80 (341)
387 2cjw_A GTP-binding protein GEM 91.6 0.11 3.8E-06 43.3 3.3 22 63-84 8-29 (192)
388 3tw8_B RAS-related protein RAB 91.6 0.1 3.4E-06 41.9 2.9 22 63-84 11-32 (181)
389 3nbx_X ATPase RAVA; AAA+ ATPas 91.6 0.065 2.2E-06 52.9 2.1 29 58-86 38-66 (500)
390 2qmh_A HPR kinase/phosphorylas 91.6 0.088 3E-06 46.4 2.7 27 59-85 32-58 (205)
391 3t5g_A GTP-binding protein RHE 91.6 0.095 3.3E-06 42.4 2.7 23 63-85 8-30 (181)
392 2bov_A RAla, RAS-related prote 91.6 0.097 3.3E-06 43.2 2.8 23 63-85 16-38 (206)
393 3pqc_A Probable GTP-binding pr 91.5 0.073 2.5E-06 43.3 2.0 23 63-85 25-47 (195)
394 1vg8_A RAS-related protein RAB 91.5 0.1 3.5E-06 43.2 2.9 23 63-85 10-32 (207)
395 2r8r_A Sensor protein; KDPD, P 91.5 0.2 7E-06 44.7 5.0 27 60-86 4-31 (228)
396 1z06_A RAS-related protein RAB 91.4 0.1 3.6E-06 42.8 2.9 23 63-85 22-44 (189)
397 2lkc_A Translation initiation 91.4 0.12 4.2E-06 41.4 3.2 26 59-84 6-31 (178)
398 1zd9_A ADP-ribosylation factor 91.4 0.1 3.5E-06 42.9 2.8 23 63-85 24-46 (188)
399 3t1o_A Gliding protein MGLA; G 91.4 0.11 3.8E-06 42.2 3.0 22 63-84 16-37 (198)
400 3reg_A RHO-like small GTPase; 91.4 0.1 3.6E-06 42.9 2.8 23 63-85 25-47 (194)
401 2fg5_A RAB-22B, RAS-related pr 91.3 0.1 3.5E-06 43.1 2.7 23 63-85 25-47 (192)
402 1p9r_A General secretion pathw 91.3 0.11 3.7E-06 50.1 3.3 34 52-86 159-192 (418)
403 1svi_A GTP-binding protein YSX 91.3 0.077 2.6E-06 43.5 2.0 24 61-84 23-46 (195)
404 1x3s_A RAS-related protein RAB 91.3 0.11 3.7E-06 42.4 2.8 23 63-85 17-39 (195)
405 3euj_A Chromosome partition pr 91.3 0.12 4.2E-06 50.8 3.7 30 55-85 24-53 (483)
406 2a5j_A RAS-related protein RAB 91.3 0.11 3.7E-06 42.9 2.8 23 63-85 23-45 (191)
407 2atv_A RERG, RAS-like estrogen 91.3 0.11 3.7E-06 43.0 2.9 39 46-85 14-52 (196)
408 1uj2_A Uridine-cytidine kinase 91.3 0.13 4.3E-06 45.2 3.4 25 62-86 23-47 (252)
409 2hf9_A Probable hydrogenase ni 91.2 0.12 4.2E-06 43.7 3.2 26 61-86 38-63 (226)
410 2f1r_A Molybdopterin-guanine d 91.2 0.059 2E-06 45.5 1.1 25 62-86 3-27 (171)
411 2iw3_A Elongation factor 3A; a 91.2 0.06 2.1E-06 57.4 1.4 33 53-85 691-723 (986)
412 3ake_A Cytidylate kinase; CMP 91.2 0.14 4.7E-06 42.7 3.4 24 63-86 4-27 (208)
413 2fh5_B SR-beta, signal recogni 91.2 0.11 3.8E-06 43.5 2.8 24 62-85 8-31 (214)
414 1vht_A Dephospho-COA kinase; s 91.1 0.14 4.9E-06 43.5 3.5 24 60-83 3-26 (218)
415 1sxj_A Activator 1 95 kDa subu 91.0 0.15 5E-06 50.0 4.0 26 61-86 77-102 (516)
416 2p5s_A RAS and EF-hand domain 91.0 0.12 4E-06 43.0 2.8 24 62-85 29-52 (199)
417 2xxa_A Signal recognition part 91.0 0.66 2.3E-05 44.8 8.5 28 60-87 99-126 (433)
418 3oes_A GTPase rhebl1; small GT 91.0 0.12 4E-06 43.1 2.7 26 60-85 23-48 (201)
419 2ga8_A Hypothetical 39.9 kDa p 90.9 0.14 5E-06 48.6 3.6 29 58-86 19-49 (359)
420 3ice_A Transcription terminati 90.9 0.045 1.5E-06 53.1 0.1 58 230-289 263-329 (422)
421 1sxj_B Activator 1 37 kDa subu 90.9 0.15 5.1E-06 45.2 3.5 27 59-85 40-66 (323)
422 3j16_B RLI1P; ribosome recycli 90.8 0.13 4.3E-06 52.0 3.4 30 56-85 368-402 (608)
423 2gf0_A GTP-binding protein DI- 90.8 0.14 4.8E-06 41.9 3.1 25 61-85 8-32 (199)
424 2grj_A Dephospho-COA kinase; T 90.8 0.15 5E-06 43.7 3.3 25 62-86 13-37 (192)
425 2atx_A Small GTP binding prote 90.8 0.13 4.3E-06 42.4 2.8 23 63-85 20-42 (194)
426 2bcg_Y Protein YP2, GTP-bindin 90.8 0.12 4.1E-06 43.0 2.7 23 63-85 10-32 (206)
427 3tqc_A Pantothenate kinase; bi 90.8 0.12 4.3E-06 48.1 3.0 24 63-86 94-117 (321)
428 3cr8_A Sulfate adenylyltranfer 90.8 0.09 3.1E-06 52.6 2.1 30 57-86 365-394 (552)
429 2h17_A ADP-ribosylation factor 90.7 0.093 3.2E-06 42.9 1.9 23 62-84 22-44 (181)
430 2ew1_A RAS-related protein RAB 90.7 0.12 4.2E-06 43.6 2.7 23 63-85 28-50 (201)
431 3cf2_A TER ATPase, transitiona 90.7 0.52 1.8E-05 49.3 7.9 27 61-87 511-537 (806)
432 1fzq_A ADP-ribosylation factor 90.7 0.13 4.3E-06 42.3 2.7 24 61-84 16-39 (181)
433 2fu5_C RAS-related protein RAB 90.7 0.086 2.9E-06 42.8 1.7 22 63-84 10-31 (183)
434 1zj6_A ADP-ribosylation factor 90.7 0.11 3.8E-06 42.5 2.4 25 60-84 15-39 (187)
435 3p32_A Probable GTPase RV1496/ 90.7 0.78 2.7E-05 42.5 8.4 28 59-86 77-104 (355)
436 1gwn_A RHO-related GTP-binding 90.6 0.13 4.4E-06 43.5 2.7 23 63-85 30-52 (205)
437 1zbd_A Rabphilin-3A; G protein 90.6 0.14 4.9E-06 42.3 3.0 23 63-85 10-32 (203)
438 3g5u_A MCG1178, multidrug resi 90.5 0.1 3.5E-06 57.0 2.5 31 55-85 1053-1083(1284)
439 1ypw_A Transitional endoplasmi 90.5 0.12 4E-06 53.8 2.8 31 58-88 508-538 (806)
440 1ksh_A ARF-like protein 2; sma 90.5 0.094 3.2E-06 42.7 1.7 26 59-84 16-41 (186)
441 2o52_A RAS-related protein RAB 90.5 0.12 3.9E-06 43.3 2.3 22 63-84 27-48 (200)
442 4bas_A ADP-ribosylation factor 90.5 0.15 5E-06 41.8 2.9 24 62-85 18-41 (199)
443 1r6b_X CLPA protein; AAA+, N-t 90.4 0.32 1.1E-05 49.5 6.0 27 59-85 205-231 (758)
444 3lxx_A GTPase IMAP family memb 90.4 0.15 5.1E-06 44.1 3.0 23 63-85 31-53 (239)
445 2fv8_A H6, RHO-related GTP-bin 90.3 0.14 5E-06 42.8 2.8 23 63-85 27-49 (207)
446 1moz_A ARL1, ADP-ribosylation 90.3 0.1 3.5E-06 42.2 1.7 25 59-83 16-40 (183)
447 3cph_A RAS-related protein SEC 90.3 0.17 5.8E-06 42.0 3.1 24 62-85 21-44 (213)
448 2q3h_A RAS homolog gene family 90.3 0.13 4.4E-06 42.6 2.4 24 62-85 21-44 (201)
449 2j37_W Signal recognition part 90.2 1.4 4.7E-05 43.5 10.1 28 59-86 99-126 (504)
450 1g41_A Heat shock protein HSLU 90.2 0.18 6E-06 49.2 3.6 26 61-86 50-75 (444)
451 3g5u_A MCG1178, multidrug resi 90.2 0.11 3.6E-06 56.8 2.3 32 54-85 409-440 (1284)
452 2www_A Methylmalonic aciduria 90.2 0.18 6.1E-06 47.1 3.5 25 61-85 74-98 (349)
453 4gzl_A RAS-related C3 botulinu 90.2 0.15 5.1E-06 42.8 2.7 26 60-85 29-54 (204)
454 2j0v_A RAC-like GTP-binding pr 90.1 0.15 5.3E-06 42.5 2.7 24 62-85 10-33 (212)
455 2wsm_A Hydrogenase expression/ 90.1 0.19 6.4E-06 42.4 3.3 28 58-85 27-54 (221)
456 3q3j_B RHO-related GTP-binding 90.1 0.16 5.4E-06 43.1 2.8 23 63-85 29-51 (214)
457 2hup_A RAS-related protein RAB 90.0 0.16 5.4E-06 42.5 2.8 23 63-85 31-53 (201)
458 1gtv_A TMK, thymidylate kinase 90.0 0.073 2.5E-06 44.8 0.7 24 63-86 2-25 (214)
459 3upu_A ATP-dependent DNA helic 90.0 0.17 5.9E-06 48.6 3.4 24 63-86 47-70 (459)
460 1f6b_A SAR1; gtpases, N-termin 90.0 0.13 4.5E-06 43.0 2.2 23 61-83 25-47 (198)
461 2gco_A H9, RHO-related GTP-bin 90.0 0.16 5.4E-06 42.4 2.7 23 63-85 27-49 (201)
462 4dkx_A RAS-related protein RAB 90.0 0.16 5.5E-06 44.1 2.8 23 63-85 15-37 (216)
463 1ojl_A Transcriptional regulat 89.9 0.19 6.5E-06 45.8 3.4 26 60-85 24-49 (304)
464 2f7s_A C25KG, RAS-related prot 89.9 0.18 6.1E-06 42.3 3.0 22 63-84 27-48 (217)
465 3cbq_A GTP-binding protein REM 89.9 0.14 4.7E-06 42.9 2.3 21 63-83 25-45 (195)
466 1ega_A Protein (GTP-binding pr 89.9 0.13 4.4E-06 46.8 2.3 25 60-84 7-31 (301)
467 4dhe_A Probable GTP-binding pr 89.8 0.78 2.7E-05 38.3 7.0 25 61-85 29-53 (223)
468 1jr3_A DNA polymerase III subu 89.8 0.21 7.2E-06 45.4 3.6 25 62-86 39-63 (373)
469 2qnr_A Septin-2, protein NEDD5 89.7 0.14 4.9E-06 46.7 2.4 21 63-83 20-40 (301)
470 3k53_A Ferrous iron transport 89.6 0.18 6E-06 44.8 2.9 22 63-84 5-26 (271)
471 3crm_A TRNA delta(2)-isopenten 89.6 0.16 5.6E-06 47.4 2.8 32 62-93 6-37 (323)
472 2ohf_A Protein OLA1, GTP-bindi 89.5 0.16 5.5E-06 48.8 2.7 28 57-84 18-45 (396)
473 2il1_A RAB12; G-protein, GDP, 89.5 0.19 6.4E-06 41.6 2.8 22 63-84 28-49 (192)
474 2b6h_A ADP-ribosylation factor 89.5 0.18 6.2E-06 41.8 2.7 24 60-83 28-51 (192)
475 3d3q_A TRNA delta(2)-isopenten 89.4 0.18 6.1E-06 47.5 2.9 31 63-93 9-39 (340)
476 2h57_A ADP-ribosylation factor 89.4 0.16 5.4E-06 41.7 2.2 24 62-85 22-45 (190)
477 1np6_A Molybdopterin-guanine d 89.4 0.25 8.5E-06 41.8 3.5 24 62-85 7-30 (174)
478 4f4c_A Multidrug resistance pr 89.3 0.16 5.3E-06 55.7 2.7 31 56-86 439-469 (1321)
479 2h92_A Cytidylate kinase; ross 89.3 0.25 8.6E-06 41.8 3.5 26 61-86 3-28 (219)
480 2j1l_A RHO-related GTP-binding 89.3 0.2 7E-06 42.3 2.9 23 62-84 35-57 (214)
481 2g3y_A GTP-binding protein GEM 89.3 0.21 7.2E-06 43.1 3.0 21 63-83 39-59 (211)
482 3cpj_B GTP-binding protein YPT 89.1 0.2 7E-06 42.5 2.8 23 63-85 15-37 (223)
483 2j9r_A Thymidine kinase; TK1, 89.1 0.76 2.6E-05 40.5 6.6 126 58-218 25-159 (214)
484 3l0o_A Transcription terminati 89.1 0.16 5.4E-06 49.3 2.3 58 230-289 264-329 (427)
485 2qu8_A Putative nucleolar GTP- 89.1 0.15 5.1E-06 43.6 1.9 23 62-84 30-52 (228)
486 2ocp_A DGK, deoxyguanosine kin 89.0 0.25 8.6E-06 42.8 3.4 26 60-85 1-26 (241)
487 2yc2_C IFT27, small RAB-relate 89.0 0.1 3.4E-06 43.1 0.7 23 62-84 21-43 (208)
488 1u0j_A DNA replication protein 88.9 0.28 9.6E-06 44.7 3.7 23 63-85 106-128 (267)
489 3a8t_A Adenylate isopentenyltr 88.9 0.17 5.8E-06 47.7 2.3 37 59-95 38-74 (339)
490 1ltq_A Polynucleotide kinase; 88.8 0.23 7.8E-06 44.3 3.0 22 63-84 4-25 (301)
491 1xjc_A MOBB protein homolog; s 88.7 0.28 9.7E-06 41.5 3.4 23 63-85 6-28 (169)
492 3pxi_A Negative regulator of g 88.5 0.28 9.6E-06 50.1 3.8 27 59-85 199-225 (758)
493 2xtp_A GTPase IMAP family memb 88.4 0.25 8.5E-06 43.1 3.0 24 62-85 23-46 (260)
494 3llu_A RAS-related GTP-binding 88.4 0.25 8.6E-06 40.9 2.9 22 63-84 22-43 (196)
495 3tqf_A HPR(Ser) kinase; transf 88.4 0.26 8.9E-06 42.6 3.0 26 59-84 14-39 (181)
496 1udx_A The GTP-binding protein 88.4 0.19 6.5E-06 48.4 2.4 33 52-84 148-180 (416)
497 2gno_A DNA polymerase III, gam 88.4 2 6.7E-05 39.3 9.1 74 60-142 17-93 (305)
498 3thx_A DNA mismatch repair pro 88.3 0.26 8.9E-06 52.3 3.5 33 51-83 652-684 (934)
499 1wb9_A DNA mismatch repair pro 88.2 0.3 1E-05 50.9 3.8 26 59-84 605-630 (800)
500 3exa_A TRNA delta(2)-isopenten 88.2 0.26 9E-06 46.2 3.1 26 62-87 4-29 (322)
No 1
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=8e-70 Score=533.74 Aligned_cols=251 Identities=49% Similarity=0.774 Sum_probs=230.9
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
++..|++.+....+...++ ...++.+.||..|.++++++ +||||+||+|+|||||||++|||++|+|||+|+.+|
T Consensus 97 ~d~lG~PiD~~~~i~~~~~---~~i~~~~p~p~~R~~~~e~l--~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~~~I 171 (465)
T 3vr4_D 97 FDGLGRPKDNGPEILPEKY---LDINGEVINPIARDYPDEFI--QTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQI 171 (465)
T ss_dssp EETTSCBCSCCCCCCCSEE---EESSCCCBCTTTEECCCCBC--BCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHHHHH
T ss_pred eccCCcccCCCCCCcccce---eeccCcccCchhccCccccc--ccCceEEecccccccCCEEEEeCCCCcChHHHHHHH
Confidence 4678899888776644333 23567788999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
++|+.. ++..++++|||++||||.+|+++|.+++.+.|+|+||++|++|+|+||.+|++++|+|+++||||
T Consensus 172 a~~~~~---------~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~tiAEyf 242 (465)
T 3vr4_D 172 ARQATV---------LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTAAEYL 242 (465)
T ss_dssp HHHCBC---------SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh---------ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 999853 11135679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
||++|+|||+++||+||||+|+||+|+++||||+++||||++|+.|++||||||++++++||||+|++|++|+||++|||
T Consensus 243 rd~~G~~VLl~~DslTr~A~A~REisl~lge~P~~~GYp~~vf~~l~~l~ERAg~~~~~~GSIT~i~tv~~~~dD~~~pI 322 (465)
T 3vr4_D 243 AYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGLKGSVTQIPILTMPEDDKTHPI 322 (465)
T ss_dssp HHTTCCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHHHHHHHHTSCEEETTCSCEEEEEEEEECGGGCTTSHH
T ss_pred HHhcCCeEEEEEcChHHHHHHHHHHHhhcCCCCccccCCchHHHHhHHHHHhhhccCCCCCcEEEEEEEEecCCCcccch
Confidence 99559999999999999999999999999999999999999999999999999999767999999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
|++ +|+.+++|||||+..|.||.+.
T Consensus 323 ~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~ 360 (465)
T 3vr4_D 323 PDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKD 360 (465)
T ss_dssp HHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGG
T ss_pred hHHHhhhcCeEEEEcHHHHhCCCCCCCCccccchhcch
Confidence 996 8899999999999999999864
No 2
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=1.5e-69 Score=533.74 Aligned_cols=251 Identities=50% Similarity=0.791 Sum_probs=231.1
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
++..|++.+....+..-+ ....++.+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+|+.+|
T Consensus 98 ~d~lG~PiDg~~~i~~~~---~~~i~~~~p~p~~R~~~~e~l--~TGir~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~I 172 (469)
T 2c61_A 98 LSGSGEPRDGGPRIVPDQ---LLDINGAAMNPYARLPPKDFI--QTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQI 172 (469)
T ss_dssp EETTSCBSSSCCCCCCSE---EEESSSCSSCCBCSCCCCSBC--BCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHHHHH
T ss_pred EcccCCCCCCCCCCCccc---cccccCccCCccccccccccc--ceeeEeeeeeeccccCCEEEEECCCCCCHHHHHHHH
Confidence 567899887766553222 223456678899999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
++++.. ||+.++++|||++||||.+|+++|++++.+.++|+||++|++|+|+||.+|++++|+|+++||||
T Consensus 173 a~~~~~---------n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyf 243 (469)
T 2c61_A 173 ARQASV---------PGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYL 243 (469)
T ss_dssp HHHCBC---------TTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhh---------ccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 999853 55555689999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-hcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccc
Q psy5595 162 AY-QCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVS 240 (293)
Q Consensus 162 r~-~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dp 240 (293)
|| + |+|||+++||+||||+|+||+|+++||||+++||||++|+.|++||||||++++++||||+|++|++|+||++||
T Consensus 244 rdd~-G~dVLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~~l~~l~ERAg~~~~~~GSIT~i~~v~~~~dD~~dP 322 (469)
T 2c61_A 244 AYEH-GMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITHP 322 (469)
T ss_dssp HHHH-CCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHHHHTSCEEBTTSSCEEEEEEEEECCSCTTTSC
T ss_pred HHhc-CCeEEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCchhhhhhhhHHhhccccCCCCCceeeeeeeecCCCCcCcc
Confidence 95 6 999999999999999999999999999999999999999999999999999976789999999999999999999
Q ss_pred cccc-------------ccCCCCCCCCcccccccchhhhc
Q psy5595 241 AARE-------------EVPGRRGFPGYMYTNLATIYERA 267 (293)
Q Consensus 241 i~~~-------------~la~~r~~Pai~~~~~~s~~~r~ 267 (293)
||++ +|+.+++|||||+..|.||+...
T Consensus 323 I~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~~~~ 362 (469)
T 2c61_A 323 IPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNS 362 (469)
T ss_dssp CCCCGGGGTTEEEEBCHHHHHTTCSSCBCTTTCEETTGGG
T ss_pred hHHHHhhccCcEEEEcHHHHhCCCCCccCccccccccchh
Confidence 9997 78899999999999999998763
No 3
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=1.3e-69 Score=532.05 Aligned_cols=256 Identities=48% Similarity=0.743 Sum_probs=231.9
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
++..|++.+....+...++ ...++.+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+|+.+|
T Consensus 93 ~d~lG~PiD~~~~i~~~~~---~~i~~~~p~p~~R~~~~e~l--~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~~~I 167 (464)
T 3gqb_B 93 FNGIGKPIDGLPPITPEKR---LPITGLPLNPVARRKPEQFI--QTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQI 167 (464)
T ss_dssp EETTCCBCSSSCCCCCSEE---EETTCCCBCGGGBCCCCCBC--BCSCHHHHTTSCCBTTCBCCEEEETTSCHHHHHHHH
T ss_pred eccCCcccCCCccccCcce---eeccCCCCChhhccCccccc--cCcceeeecccccccCCEEEEecCCCCCchHHHHHH
Confidence 4678999888776654333 33567788999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCC--CCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDD--SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE 159 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAE 159 (293)
++|+... .++.++ ..++.+|||++||||.+|+++|++++.+.|+|+||++|++|+|+||.+|++++|+|+++||
T Consensus 168 a~~~~a~----~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAE 243 (464)
T 3gqb_B 168 ARQATVR----PDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTVAE 243 (464)
T ss_dssp HHHCBCC----HHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHhc----ccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 9998531 111122 1246799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccc
Q psy5595 160 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKV 239 (293)
Q Consensus 160 yfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~d 239 (293)
|||+++|+|||+++||+||||+|+||+|+++||||+++||||++|+.|++||||||++++++||||++|+|++|+||++|
T Consensus 244 yfrd~~G~~VLl~~DdlTr~A~A~REisl~lge~P~~~GYp~~~f~~l~~l~ERag~~~~~~GSIT~l~~v~~~~dD~~~ 323 (464)
T 3gqb_B 244 YLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSMPDDDRTH 323 (464)
T ss_dssp HHHHTTCCEEEEEEETHHHHHHHHHHHHHTTTCCBCGGGSBTTHHHHHHHHHTSCBCBTTCSCEEEEEEEEEETTSCTTS
T ss_pred HHHHhcCCeEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHhhcccCCCCCcEEEEEEEEccCCCccC
Confidence 99995599999999999999999999999999999999999999999999999999997679999999999999999999
Q ss_pred ccccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 240 SAARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 240 pi~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
|||++ +|+.+++|||||+..|.||.+.
T Consensus 324 pi~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~ 363 (464)
T 3gqb_B 324 PIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMN 363 (464)
T ss_dssp HHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGG
T ss_pred chhHHHhhhcCeEEEEcHHHHhCCCCCCcCcccchhhcch
Confidence 99996 8899999999999999998754
No 4
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=2.5e-68 Score=527.06 Aligned_cols=245 Identities=21% Similarity=0.297 Sum_probs=224.9
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHH-HH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIA-AQ 80 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~-~~ 80 (293)
++..|++.+.+..+...++ ...+..+.||..|.++++|| +||||+||+|+|||||||++|||++|+|||+|+ .+
T Consensus 108 ~d~lG~PiDg~g~i~~~~~---~pi~~~ap~~~~R~~v~epl--~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~ 182 (513)
T 3oaa_A 108 VNTLGAPIDGKGPLDHDGF---SAVEAIAPGVIERQSVDQPV--QTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDA 182 (513)
T ss_dssp EETTSCBTTCSCSCCCSCE---EESSCCCCCSSSCCCCCCBC--CCSCHHHHHHSCCBTTCBCEEEESSSSSHHHHHHHH
T ss_pred hhhcCcCccCCCCCCccce---eecccCCCCccccCCcCccc--ccceeeeccccccccCCEEEeecCCCCCcchHHHHH
Confidence 4677999888776543332 33556678899999999999 999999999999999999999999999999995 68
Q ss_pred HHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 81 ICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 81 I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
|++|.. ++.+|||++||||.+|+.+|.+++.++|+|+||++|++|+|+||.+|+++||+|+++|||
T Consensus 183 I~n~~~--------------~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEy 248 (513)
T 3oaa_A 183 IINQRD--------------SGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEY 248 (513)
T ss_dssp HHTTSS--------------SSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcc--------------CCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHHHHHH
Confidence 888753 467899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccC-------------CCCcceeee
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE-------------GRNGSITQI 227 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~-------------~~~GSiT~i 227 (293)
|||+ |+|||+++||+||||+|+||+|+++||||+++||||++|+.|++||||||+++ +++||||++
T Consensus 249 frd~-G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYP~~vf~~~srLlERAg~~~~~~~~~~~~~~~~g~~GSITal 327 (513)
T 3oaa_A 249 FRDR-GEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTAL 327 (513)
T ss_dssp HHHT-TCEEEEEEETHHHHHHHHHHHHHHTTCCBCTTSCBTTHHHHHHHHHTTCSEECHHHHHHHHTTSCCSCCEEEEEC
T ss_pred HHhc-CCCEEEEecChHHHHHHHHHHHHhcCCCCcccCCCchhhhhcchHHHHHhhcccccchhccccccCCCCcceEEE
Confidence 9998 99999999999999999999999999999999999999999999999999973 348999999
Q ss_pred eEEEecCCCcccccccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 228 PILTMPNDDFKVSAARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 228 ~~v~~~~~d~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
|+|++|+||++||||++ +|+.+++|||||+..|.||...
T Consensus 328 ~~V~~~~dD~s~pIp~~~~si~DGqIvLsr~La~~giyPAIdvl~SvSRv~~ 379 (513)
T 3oaa_A 328 PIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGG 379 (513)
T ss_dssp CEEECGGGCCSSHHHHHHHHHSSEEEEECHHHHTTSCCSCBCTTTCEESSGG
T ss_pred EEEEcCCCCccCcchHhhhccCCeEEEEehhHHhCCCCCccCccccccccCc
Confidence 99999999999999996 8899999999999999988753
No 5
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=1.3e-67 Score=522.42 Aligned_cols=245 Identities=20% Similarity=0.273 Sum_probs=226.0
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHH-HHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEI-AAQ 80 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L-~~~ 80 (293)
.+..|++.+....+...+ .......+.||..|.++++++ +||||+||+|+|||||||++|||++|+|||+| +.+
T Consensus 108 vd~lG~PiDg~g~i~~~~---~~pi~~~~p~~~~R~~v~epl--~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~ 182 (502)
T 2qe7_A 108 VNPLGQPLDGRGPIETAE---YRPIESPAPGVMDRKSVHEPL--QTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDT 182 (502)
T ss_dssp ECTTCCBSSCSCCCCCCC---EEESSCCCCCTTSBCCCCSBC--CCSCHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHH
T ss_pred EccCCCCCCCCCCCCCCc---eeeccCCCCCcccccCCCCcc--ccceeecccccccccCCEEEEECCCCCCchHHHHHH
Confidence 467899988877654332 334556777899999999999 99999999999999999999999999999999 559
Q ss_pred HHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 81 ICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 81 I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
|+||+. ++.+|||++||||.+|+++|++++.+.|+|+||++|++|+|+||.+|++++|+|+++|||
T Consensus 183 I~~~~~--------------~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEy 248 (502)
T 2qe7_A 183 IINQKG--------------QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMGEY 248 (502)
T ss_dssp HHGGGS--------------CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhc--------------CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 999874 356899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCC--CCcceeeeeEEEecCCCcc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDDFK 238 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~--~~GSiT~i~~v~~~~~d~~ 238 (293)
|||+ |+|||+++||+||||+|+||+|+++||||+++||||++|+.|++|+||||+++. ++||||++|+|++|+||++
T Consensus 249 frd~-G~dVLl~~Dsltr~A~A~REisl~lgepP~~~gYpg~vf~~~~rL~ERAg~~~~~~~~GSITal~~v~~~~dD~s 327 (502)
T 2qe7_A 249 FMYK-GKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEKGGGSLTALPFIETQAGDVS 327 (502)
T ss_dssp HHTT-TCEEEEEEECHHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHHHHTSCCBBCTTTTCCEEEEEEEEECSTTCCS
T ss_pred HHHc-CCcEEEEEecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHHHHHHHhhhcccccCCCcceeEEEEEEccCCCcc
Confidence 9998 999999999999999999999999999999999999999999999999999863 4799999999999999999
Q ss_pred cccccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 239 VSAARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 239 dpi~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
||||++ +|+.+++|||||+..|.||+..
T Consensus 328 ~pI~~~~~si~DgqI~Lsr~La~~g~~PAIdvl~S~SRv~~ 368 (502)
T 2qe7_A 328 AYIPTNVISITDGQIFLESDLFYSGVRPAVNVGISVSRVGG 368 (502)
T ss_dssp SHHHHHHHTTSSEEEEECHHHHTTTCSSCBCTTTCEESSGG
T ss_pred cchhHHHhhhcCcEEEEehhHhhCCCCceeCcccccccCCC
Confidence 999996 7899999999999999999754
No 6
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=1.4e-67 Score=522.86 Aligned_cols=246 Identities=22% Similarity=0.315 Sum_probs=226.7
Q ss_pred CCcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHH-HH
Q psy5595 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEI-AA 79 (293)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L-~~ 79 (293)
+++..|++.+.+..+...+ .......+.||..|.++++++ +||||+||+|+|||||||++|||++|+|||+| +.
T Consensus 108 Vvd~lG~PiDg~g~i~~~~---~~pi~~~~p~~~~R~~v~epl--~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~ 182 (507)
T 1fx0_A 108 VINALAKPIDGRGEITASE---SRLIESPAPGIMSRRSVYEPL--QTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATD 182 (507)
T ss_dssp CCCSSSCCSSSSCCCCCSE---EEESSCCCCCSSSBCCCCSBC--CCSCTTTTTTSCCBTTCBCBEEESSSSSHHHHHHH
T ss_pred EEccCCcCCCCCCCCCCCc---eeeccCCCCCcccccccCCcc--cccceecccccccccCCEEEEecCCCCCccHHHHH
Confidence 3577899998877654333 233556777899999999999 99999999999999999999999999999999 55
Q ss_pred HHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHH
Q psy5595 80 QICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE 159 (293)
Q Consensus 80 ~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAE 159 (293)
+|+||+. ++.+|||++||||.+|+++|++++.+.|+|+||++|++|+|+||.+|+++||+|+++||
T Consensus 183 ~I~~~~~--------------~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAE 248 (507)
T 1fx0_A 183 TILNQQG--------------QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAE 248 (507)
T ss_dssp HHHTCCT--------------TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHHH
T ss_pred HHHHhhc--------------CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 8888873 35689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCC--CCcceeeeeEEEecCCCc
Q psy5595 160 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDDF 237 (293)
Q Consensus 160 yfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~--~~GSiT~i~~v~~~~~d~ 237 (293)
||||+ |+|||+++||+||||+|+||+|+++||||+++||||++|+.|++|+||||+++. ++||||++|+|++|+||+
T Consensus 249 yfrd~-G~dVLli~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~~srLlERAg~~~~~~~~GSITal~~v~~~~~D~ 327 (507)
T 1fx0_A 249 YFMYR-ERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDV 327 (507)
T ss_dssp HHHHT-TCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTTGGGCCBBCTTTTSCEEEECCEEECSTTCT
T ss_pred HHHHc-CCcEEEEEecHHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHHHHhhhhccccCCCcceeeeeeeeccCCCc
Confidence 99998 999999999999999999999999999999999999999999999999999863 479999999999999999
Q ss_pred ccccccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 238 KVSAARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 238 ~dpi~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
+||||++ +|+.+++|||||+..|.||+..
T Consensus 328 s~pI~~~~~si~DgqIvLsr~La~~g~yPAIdvl~S~SR~~~ 369 (507)
T 1fx0_A 328 SAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGS 369 (507)
T ss_dssp TSHHHHHHHTTSSCBCCCCSSSSSSSCSSCCCTTTCCCTTGG
T ss_pred ccchHHHHHhhcCcEEEEehhHhhCCCCCccchhhhhccccc
Confidence 9999986 8999999999999999999764
No 7
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1.3e-67 Score=522.95 Aligned_cols=245 Identities=22% Similarity=0.276 Sum_probs=225.3
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHH-HHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEI-AAQ 80 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L-~~~ 80 (293)
.+..|++.+.+..+...+ .......+.||..|.++++++ +||||+||+|+|||||||++|||++|+|||+| +.+
T Consensus 121 vd~lG~PiDg~g~i~~~~---~~pi~~~~P~~~~R~~v~epl--~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~ 195 (515)
T 2r9v_A 121 VNPLGEPLDGKGPINAKN---FRPIEIKAPGVIYRKPVDTPL--QTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDT 195 (515)
T ss_dssp ECTTSCBCSSSCCCCCSE---EEESCCCCCCGGGBCCCCSEE--CCSCHHHHHHSCEETTCBEEEEEETTSSHHHHHHHH
T ss_pred EcCCCCCcCCCCCCCccc---eeecccCCCCcccccCCCcch--hcCccccccccccccCCEEEEEcCCCCCccHHHHHH
Confidence 467899988776654333 233456677899999999999 99999999999999999999999999999999 559
Q ss_pred HHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 81 ICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 81 I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
|+||+. ++.+|||++||||.+|+++|++++.+.|+|+||++|++|+|+||.+|+++||+|+++|||
T Consensus 196 I~~~~~--------------~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAEy 261 (515)
T 2r9v_A 196 IINQKG--------------QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAMGEY 261 (515)
T ss_dssp HHTTTT--------------TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhc--------------CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 998874 356899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCC--CCcceeeeeEEEecCCCcc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDDFK 238 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~--~~GSiT~i~~v~~~~~d~~ 238 (293)
|||+ |+|||+++||+||||+|+||+|+++||||+++||||++|+.|++|+||||+++. ++||||+||+|++|+||++
T Consensus 262 frd~-G~dVLli~DslTr~A~A~REisl~lgepP~r~gYp~~vf~~~~rLlERAg~~~~~~~~GSITal~~v~~~~~D~s 340 (515)
T 2r9v_A 262 FAYS-GRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVRLNDKLGGGSLTALPIVETQANDIS 340 (515)
T ss_dssp HHTT-TCEEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHHHTTCEEBCTTTTSCEEEEEEEEEESTTCTT
T ss_pred HHHc-CCcEEEEeccHHHHHHHHHHHhhhcCCCCCcccCChhHHHHhHHHHHHHhhccccCCCcceEEeeeeeccCCCcc
Confidence 9998 999999999999999999999999999999999999999999999999999863 4799999999999999999
Q ss_pred cccccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 239 VSAARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 239 dpi~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
||||++ +|+.+++|||||+..|.||+..
T Consensus 341 ~pI~~~~~si~DGqI~Lsr~La~~g~yPAIdvl~SvSRv~~ 381 (515)
T 2r9v_A 341 AYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSRVGG 381 (515)
T ss_dssp SHHHHHHHHTSSEEEEBCHHHHHHTCSSCBCTTTCEEGGGT
T ss_pred ccchhhhccccceEEEEchHHHhCCCCCeeccccccccCCc
Confidence 999996 7889999999999999999764
No 8
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=1.9e-67 Score=520.96 Aligned_cols=245 Identities=20% Similarity=0.280 Sum_probs=225.6
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
+++.|++.+....+...+ .......+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+|+++|
T Consensus 111 ~d~lG~PiD~~~~i~~~~---~~pi~~~~p~~~~r~~~~e~l--~TGirvID~l~pigkGqr~gIfgg~GvGKT~L~~~l 185 (498)
T 1fx0_B 111 FNVLGEPVDNLRPVDTRT---TSPIHRSAPAFTQLDTKLSIF--ETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMEL 185 (498)
T ss_dssp ECTTSCBCSSSSCCCCSE---EEESCCCCCCGGGCCCCCCCC--CCSCTTHHHHSCCCTTCCEEEEECSSSSHHHHHHHH
T ss_pred EcccccCCCCcCCcCCCc---eeccccCCCchhhhccccccc--ccceeEeeeecccccCCeEEeecCCCCCchHHHHHH
Confidence 578899998876653222 333556777899999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccc-------cEEEEeeCCCCchhhhhchHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSME-------NVCLFLNLANDPTIERIITPRLA 154 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~-------~tvvv~stsd~~~~~r~~a~~~a 154 (293)
+++..+. ++++|||++||||.+|+++|++++.+.++++ |+++|++|+|+||.+|++++++|
T Consensus 186 ~~~~a~~------------~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~~a 253 (498)
T 1fx0_B 186 INNIAKA------------HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTA 253 (498)
T ss_dssp HHHTTTT------------CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHHHHH
T ss_pred HHHHHhh------------CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHHHHHHH
Confidence 9987542 3579999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecC
Q psy5595 155 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPN 234 (293)
Q Consensus 155 ~tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~ 234 (293)
+++||||||++|+|||+++||+||||+|+||||+++||+|+++||||++|+.|++|||||++ +++||||+|++|++|+
T Consensus 254 ltiAEyfrd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~~~l~~L~ERag~--~~~GSIT~i~tV~v~~ 331 (498)
T 1fx0_B 254 LTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITS--TKEGSITSIQAVYVPA 331 (498)
T ss_dssp HHTHHHHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHTSSSSSC--CTTCEECCEEEEECGG
T ss_pred HHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHhccC--CCCCceeeeEEEEccC
Confidence 99999999944999999999999999999999999999999999999999999999999998 4689999999999999
Q ss_pred CCcccccccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 235 DDFKVSAARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 235 ~d~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
||++|||||+ +|+.+++|||||+..|.||+.
T Consensus 332 dD~tdPi~d~~~~ilDG~ivLsR~La~~giyPAID~l~S~SR~~ 375 (498)
T 1fx0_B 332 DDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTML 375 (498)
T ss_dssp GCSSSHHHHHHHTTCSEEEEBCSTTTTTTCSSCBCSSSCCBTTC
T ss_pred CCcCCcchHHHHHhhCceEEehhhHHhCCCCceeccccccccCC
Confidence 9999999985 899999999999999999985
No 9
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=2.9e-67 Score=520.84 Aligned_cols=253 Identities=18% Similarity=0.256 Sum_probs=227.4
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHH-HHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEI-AAQ 80 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L-~~~ 80 (293)
.+..|++.+....+...+ .......+.||..|.++++++ +||||+||+|+|||||||++|||++|+|||+| +.+
T Consensus 108 vd~lG~PiDg~g~i~~~~---~~pi~~~~p~~~~R~~v~epl--~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~ 182 (510)
T 2ck3_A 108 VDALGNAIDGKGPIGSKA---RRRVGLKAPGIIPRISVREPM--QTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDT 182 (510)
T ss_dssp ECTTSCBCSSSCCCCCSE---EEESSCCCCCSTTBCCCCSBC--CCSCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHH
T ss_pred EccCCcCcCCCCCCCccc---eeecccCCCCcccccccCccc--cccceeeccccccccCCEEEEecCCCCCchHHHHHH
Confidence 467899988877654333 233556777899999999999 99999999999999999999999999999999 569
Q ss_pred HHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 81 ICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 81 I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
|+||+.++.- ++ |+ ++++|||++||||.+|+++|++++.+.|+|+||++|++|+|+||.+|+++||+|+++|||
T Consensus 183 I~~q~~~~~~-~~---~~--~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEy 256 (510)
T 2ck3_A 183 IINQKRFNDG-TD---EK--KKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEY 256 (510)
T ss_dssp HHHTHHHHTS-CC---TT--TCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccc-cc---cC--CCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 9999863100 00 11 346899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCC--CCcceeeeeEEEecCCCcc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDDFK 238 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~--~~GSiT~i~~v~~~~~d~~ 238 (293)
|||+ |+|||+++|||||||+|+||+|+++||||+++||||++|+.|++|+||||+++. ++||||++|+|++|+||++
T Consensus 257 frd~-G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYpg~vf~~~~rLlERAg~~~~~~~~GSITal~~v~~~~dD~s 335 (510)
T 2ck3_A 257 FRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVS 335 (510)
T ss_dssp HHTT-TCEEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHHHHTTCEEBCGGGTSCEEEEEEEEECSTTCTT
T ss_pred HHHc-CCcEEEEEcCHHHHHHHHHHHHHhcCCCCccCCcCchHHHhhHHHHHhhhcccccCCCcceeEeeeeccCCCCcc
Confidence 9998 999999999999999999999999999999999999999999999999999863 4799999999999999999
Q ss_pred cccccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 239 VSAARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 239 dpi~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
||||++ +|+.+++|||||+..|.||+..
T Consensus 336 ~pI~~~~~si~DgqI~Lsr~La~~gi~PAIdvl~SvSRv~~ 376 (510)
T 2ck3_A 336 AYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGS 376 (510)
T ss_dssp SHHHHHHHHHSSEEEEBCHHHHHHTCSSCBCTTTCEESSGG
T ss_pred ccchHhhhcccceEEEEehhHhhCCCCCcccchhccccccc
Confidence 999996 7889999999999999999754
No 10
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=9.9e-67 Score=514.11 Aligned_cols=245 Identities=21% Similarity=0.290 Sum_probs=224.1
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
++..|++.+....+.. .........+.||..|.+++++| +||||+||+|+|||||||++|||++|+|||+|+++|
T Consensus 99 ~d~lG~PiDg~~~~~~---~~~~pi~~~~P~~~~r~~~~e~l--~TGir~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i 173 (482)
T 2ck3_D 99 MNVIGEPIDERGPIKT---KQFAAIHAEAPEFVEMSVEQEIL--VTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 173 (482)
T ss_dssp ECTTSCBCSSSCSCCC---CCEEESCCCCCCGGGCCCCCCEE--CCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHH
T ss_pred EcccCcCcCCcCCCCc---cccccccccCCchHHhcccCcCC--ccceEEEecccccccCCeeeeecCCCCChHHHHHHH
Confidence 5678888877665432 23334556677899999999999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccc------cEEEEeeCCCCchhhhhchHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSME------NVCLFLNLANDPTIERIITPRLAL 155 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~------~tvvv~stsd~~~~~r~~a~~~a~ 155 (293)
+++..+. ++++|||++||||.+|+++|++++.+.++++ |+++|++|+|+||.+|++++|+|+
T Consensus 174 ~~~~~~~------------~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~a~ 241 (482)
T 2ck3_D 174 INNVAKA------------HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGL 241 (482)
T ss_dssp HHHTTTT------------CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHhhHhh------------CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHHHHHHHH
Confidence 9987532 3578999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCC
Q psy5595 156 TTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPND 235 (293)
Q Consensus 156 tiAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~ 235 (293)
++||||||++|+|||+++||+||||+|+||+|+++||||+++||||++|+.|++|||||++ +++||||+|++|++|+|
T Consensus 242 tiAEyfrd~~G~dVLll~DsitR~A~A~rEis~~lge~P~~~GYpp~l~~~l~~l~ERag~--~~~GSIT~i~tv~v~~d 319 (482)
T 2ck3_D 242 TVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT--TKKGSITSVQAIYVPAD 319 (482)
T ss_dssp HHHHHHHHTTCSCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHHHHHHHHTTSSC--CSSCCEEEEEEEECGGG
T ss_pred HHHHHHHHhcCCcEEEEeccHHHHHHHHHHhhhhcCCCCccccCchhHHHHhHHHHHhhcC--CCCCceeeeEEEEecCC
Confidence 9999999933999999999999999999999999999999999999999999999999997 36899999999999999
Q ss_pred Ccccccccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 236 DFKVSAARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 236 d~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
|++|||||+ +|+.+++|||||+..|.||+.
T Consensus 320 D~tdPi~d~~~~i~dG~ivLsr~La~~giyPAIDvl~S~SR~~ 362 (482)
T 2ck3_D 320 DLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM 362 (482)
T ss_dssp CTTSHHHHHHGGGCSEEEEBCHHHHTTTCSSCBCTTSCEETTC
T ss_pred CCCCccHHHHHHhcCeEEEEcHHHHhCCCCCccCcccccccCC
Confidence 999999985 889999999999999999985
No 11
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=2.9e-65 Score=511.23 Aligned_cols=237 Identities=26% Similarity=0.396 Sum_probs=214.8
Q ss_pred CCceeEEEecceeecccccC-------CCc-cccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 12 PDDLLYLEFLTKFEKNFVSQ-------EGE-RSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 12 ~~~~~~~e~~~~~~~~~~~~-------~p~-~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
+|.++++|..+...+..+.+ +|. .|.+++++| +||||+||+|+|||||||++|||++|+|||+|+++|++
T Consensus 177 ~~~v~~i~~~~g~~~i~~~~~wpv~~~~p~~~R~~~~epl--~TGirvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~ 254 (600)
T 3vr4_A 177 DDPICVIETEQGLKELTMMQKWPVRRGRPIKQKLNPDVPM--ITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAK 254 (600)
T ss_dssp TSCCEEEEETTEEEEECSCEEEETTSCCCCSEEECCCSBC--CCCCHHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceeEEEEeccCCcccccccccccccCCCchhhccCCCcee--cccchhhhccCCccCCCEEeeecCCCccHHHHHHHHHh
Confidence 56677777643332222111 354 688999999 99999999999999999999999999999999999999
Q ss_pred HhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhh-------CCccccEEEEeeCCCCchhhhhchHHHHHH
Q psy5595 84 QAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEE-------NGSMENVCLFLNLANDPTIERIITPRLALT 156 (293)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~-------~g~~~~tvvv~stsd~~~~~r~~a~~~a~t 156 (293)
|+. .++|||++||||.+|++++.+++.+ .++|+||++|++|+|+||.+|++++|+|++
T Consensus 255 ~~~---------------~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvvV~~tsd~p~~~R~~~~~~alt 319 (600)
T 3vr4_A 255 WSD---------------VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTSNMPVAAREASIYTGIT 319 (600)
T ss_dssp HSS---------------CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred ccC---------------CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHH
Confidence 973 5799999999999999999999865 678999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccC-----CCCcceeeeeEEE
Q psy5595 157 TAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIPILT 231 (293)
Q Consensus 157 iAEyfr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~-----~~~GSiT~i~~v~ 231 (293)
+||||||+ |+|||+++||+||||+|+||+|+++||+|+++|||+++|+.+++||||||+++ +++||||++++|+
T Consensus 320 iAEyfrd~-G~dVLl~~Ds~tR~A~A~rEiS~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~ 398 (600)
T 3vr4_A 320 IAEYFRDM-GYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVS 398 (600)
T ss_dssp HHHHHHTT-TCEEEEEEECHHHHHHHHHHHHHHTTCCBCGGGCBTTHHHHHHHHHTTSEEEECSSTTCCEEEEEEEEEEC
T ss_pred HHHHHHHc-CCCEEEEecchHHHHHHHHHHHhccCCCCccccCCchhhhHHHHHHHhhccccccCCCCCCcceEEEEEEE
Confidence 99999998 99999999999999999999999999999999999999999999999999974 3689999999999
Q ss_pred ecCCCcccccccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 232 MPNDDFKVSAARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 232 ~~~~d~~dpi~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
+|+||++||||++ +|+.+++|||||+..|.|++..
T Consensus 399 ~~gdD~tdPi~~~t~~i~dg~ivLsr~La~~giyPAId~l~S~SR~~~ 446 (600)
T 3vr4_A 399 PSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLYST 446 (600)
T ss_dssp CSSSCTTSHHHHHHHTTCCEECCBCHHHHTTTCSSCBCTTTCEETTHH
T ss_pred CCCCCCCCcchhhhhhhccEEEEEhhhHHhCCCCCccCcccchhhhcc
Confidence 9999999999986 8899999999999999999975
No 12
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=2.3e-65 Score=510.24 Aligned_cols=216 Identities=26% Similarity=0.410 Sum_probs=205.5
Q ss_pred Cc-cccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecC
Q psy5595 33 GE-RSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMG 111 (293)
Q Consensus 33 p~-~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iG 111 (293)
|. .|.+++++| +||||+||+|+|||||||++|||++|+|||+|+++|++|+. .++|||++||
T Consensus 194 p~~~R~~~~epl--~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~---------------~~v~V~~~iG 256 (578)
T 3gqb_A 194 PVQRKLDPNTPF--LTGMRILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSN---------------ADVVVYVGSG 256 (578)
T ss_dssp CCSEEECSCSEE--CCSCHHHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSS---------------CSEEEEEEEE
T ss_pred ChHHhccCCCcc--cccchhhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccC---------------CCEEEEEEec
Confidence 44 688999999 99999999999999999999999999999999999999973 5799999999
Q ss_pred ccchhHHHHHHhhhh-------CCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHHH
Q psy5595 112 VNMETARFFKQDFEE-------NGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALR 184 (293)
Q Consensus 112 er~e~~~~~~~~l~~-------~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~r 184 (293)
||.+|++++.+++.+ .++|+||++|++|+|+||.+|++++|+|+++||||||+ |+|||+++||+||||+|+|
T Consensus 257 ER~~Ev~e~~~~~~el~d~~~G~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyfrd~-G~dVLl~~Ds~tR~A~A~r 335 (578)
T 3gqb_A 257 ERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQ-GFSVALMADSTSRWAEALR 335 (578)
T ss_dssp ECHHHHHHHHTTGGGCBCTTTSSBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHT-TCEEEECCSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEecChHHHHHHHH
Confidence 999999999999865 57899999999999999999999999999999999998 9999999999999999999
Q ss_pred HHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccC---CCCcceeeeeEEEecCCCcccccccc-------------ccCC
Q psy5595 185 EVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE---GRNGSITQIPILTMPNDDFKVSAARE-------------EVPG 248 (293)
Q Consensus 185 eisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~---~~~GSiT~i~~v~~~~~d~~dpi~~~-------------~la~ 248 (293)
|+|+++||+|+++||||++|+.+++||||||+++ +++||||++++|++|+||++||||++ +|+.
T Consensus 336 Eis~~lge~P~~~GYp~~l~s~l~~l~ERAg~~~~~~~~~GSIT~i~~v~~~gdD~tdPi~~~t~~i~dg~ivLsr~La~ 415 (578)
T 3gqb_A 336 EISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASLAF 415 (578)
T ss_dssp HHHHHTTCCCCSSSSCTTHHHHHHHHHTTCEEEECTTSCEEEEEEEEECCCTTTCTTSHHHHHHHTTCSEECCBCHHHHH
T ss_pred HHHHhccCCCccccCCchhhhHHHHHHHhhcCcccCCCCCcceEEEEEEEcCCCCCCCcchHHHhhhcCceEEECHHHHh
Confidence 9999999999999999999999999999999985 46899999999999999999999986 7889
Q ss_pred CCCCCCcccccccchhhh
Q psy5595 249 RRGFPGYMYTNLATIYER 266 (293)
Q Consensus 249 ~r~~Pai~~~~~~s~~~r 266 (293)
+++|||||+..|.|+++.
T Consensus 416 ~g~yPAId~l~S~SR~~~ 433 (578)
T 3gqb_A 416 RRHFPAINWNGSYSLFTS 433 (578)
T ss_dssp HTCSSCBCTTTCEESSHH
T ss_pred CCCCCCcCcccchhhccc
Confidence 999999999999999975
No 13
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=4.5e-65 Score=508.34 Aligned_cols=215 Identities=28% Similarity=0.446 Sum_probs=189.0
Q ss_pred ccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCcc
Q psy5595 34 ERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVN 113 (293)
Q Consensus 34 ~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer 113 (293)
..|.+++++| +||||+||+|+|||||||++|||++|+|||+|+++|++|+. .++|||++||||
T Consensus 202 ~~R~~~~epl--~TGirvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~---------------~~~~V~~~iGER 264 (588)
T 3mfy_A 202 KEKLPPEVPL--ITGQRVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD---------------AQVVIYIGCGER 264 (588)
T ss_dssp SEEECSCSEE--CCSCHHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS---------------CSEEEEEECCSS
T ss_pred hhhccCCccc--ccCcchhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC---------------CCEEEEEEeccc
Confidence 4688999999 99999999999999999999999999999999999999873 579999999999
Q ss_pred chhHHHHHHhhhh-------CCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHHHHH
Q psy5595 114 METARFFKQDFEE-------NGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREV 186 (293)
Q Consensus 114 ~e~~~~~~~~l~~-------~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~rei 186 (293)
.+|++++.+++.+ .++|+||++|++|+|+||.+|++++|+|+++||||||+ |+|||+++||+||||+|+||+
T Consensus 265 ~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~-G~dVLl~~DsltR~A~A~rEi 343 (588)
T 3mfy_A 265 GNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEALREI 343 (588)
T ss_dssp SSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHT-TCEEEEEEECTTTCCCCC---
T ss_pred HHHHHHHHHHHHHhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEeecchHHHHHHHHHH
Confidence 9999999999865 57899999999999999999999999999999999998 999999999999999999999
Q ss_pred hhhcCCCCCCCCCCCchhhhHHHHhhhhcccC-----CCCcceeeeeEEEecCCCcccccccc-------------ccCC
Q psy5595 187 SAAREEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIPILTMPNDDFKVSAARE-------------EVPG 248 (293)
Q Consensus 187 sl~~ge~p~~~gyp~~lf~~la~l~ERag~~~-----~~~GSiT~i~~v~~~~~d~~dpi~~~-------------~la~ 248 (293)
|+++||||+++||||++|+.+++||||||+++ +++||||++++|++|+||++||||++ +|+.
T Consensus 344 s~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~~gdD~sdpi~~~~~~i~dg~i~Lsr~La~ 423 (588)
T 3mfy_A 344 SGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLAR 423 (588)
T ss_dssp -------------CCHHHHHHHHHHTTCEEEECSSSSCCEEEEEEEEECCCTTSCSSCSHHHHHHHHCSEECCBCHHHHH
T ss_pred HHhccCCCccccCCchhhhhhhHHHhccccccccCCCCCCcceEEEEEEECCCCCCCCcchHHHHHhccCeeecCHHHHh
Confidence 99999999999999999999999999999974 36899999999999999999999986 8899
Q ss_pred CCCCCCcccccccchhhh
Q psy5595 249 RRGFPGYMYTNLATIYER 266 (293)
Q Consensus 249 ~r~~Pai~~~~~~s~~~r 266 (293)
+++|||||+..|.|+++.
T Consensus 424 ~g~yPAId~l~S~SR~~~ 441 (588)
T 3mfy_A 424 RRHFPAINWLTSYSLYVD 441 (588)
T ss_dssp TTCSSCBCTTTCEETTHH
T ss_pred CCCCCCcCcccchhhhcc
Confidence 999999999999999975
No 14
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=6e-62 Score=469.94 Aligned_cols=231 Identities=15% Similarity=0.152 Sum_probs=211.1
Q ss_pred CceeEEEecce----------eecccccCCCccccCCC-CccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 13 DDLLYLEFLTK----------FEKNFVSQEGERSFTPR-DLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 13 ~~~~~~e~~~~----------~~~~~~~~~p~~r~~p~-e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
.+|++++..+. .+++..|.||..|.+++ +++ +||+|+||+|+|||||||++|||++|+|||+|+++|
T Consensus 118 ~~l~~v~~vng~~p~~~~~r~~fe~l~Pi~P~~R~~le~e~~--~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~I 195 (427)
T 3l0o_A 118 FAMIKIEAINYRPVEAVNDRVNFDNLTPDYPRERFILETDPK--IYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEI 195 (427)
T ss_dssp EEEEEEEEETTEEC----CCCCGGGSCEECCCSBCCCCCSTT--CHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHH
T ss_pred ccceEEEecCCCChHHhccccccccCCCCCchhhccccccch--hccchhhhhcccccCCceEEEecCCCCChhHHHHHH
Confidence 46666664332 23667889999999999 999 999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
++++.+. + ++..|||++||||++|+++|++++. | +||++|+|+||.+|++++++|+++||||
T Consensus 196 a~~i~~~---------~--~dv~~V~~lIGER~~EV~d~~~~~~--G-----~VV~atadep~~~r~~~a~~altiAEyf 257 (427)
T 3l0o_A 196 ANGIAEN---------H--PDTIRIILLIDERPEEVTDIRESTN--A-----IVIAAPFDMPPDKQVKVAELTLEMAKRL 257 (427)
T ss_dssp HHHHHHH---------C--TTSEEEEEECSCCHHHHSSSSSSCC--S-----EEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhc---------C--CCeEEEEEEeccCcchHHHHHHHhC--C-----eEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 9998541 2 3568999999999999999998885 3 8999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEec-CCCcccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMP-NDDFKVS 240 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~-~~d~~dp 240 (293)
|++ |+|||+++||+||||+|+||+++++||+|+ +||||++|+.++++||||++++ ++||||+|+||+++ +||++||
T Consensus 258 rd~-G~dVLil~DslTR~A~A~rEvs~~~Ge~~s-~Gypp~~~~~~~~~~erA~~ie-~~GSIT~i~tvlvetgdd~~dp 334 (427)
T 3l0o_A 258 VEF-NYDVVILLDSLTRLARVYNIVVPPSGKLLT-GGVDPAALYKPKRFFGAARNTR-EGGSLTIIATALVETGSKMDEV 334 (427)
T ss_dssp HHT-TCEEEEEEECHHHHHHHHHHHSCCCSCCCS-SSCCSSCSHHHHHHHHTCEEES-SSCEEEEEEEEECSSSCSHHHH
T ss_pred HHc-CCCEEEecccchHHHHHHHHHHHhcCCCCC-CCcCchhhcchHHHHHhhcccC-CCcceeEEEEEEecCCCCcCCc
Confidence 997 999999999999999999999999999999 5999999999999999999997 69999999999999 7899999
Q ss_pred cccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 241 AARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 241 i~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
|+|+ +|+.+++|||||+..|.||.+.
T Consensus 335 I~d~~~~i~dg~IvLsR~La~~giyPAIDvl~S~SR~~~ 373 (427)
T 3l0o_A 335 IFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRREE 373 (427)
T ss_dssp HHHHTTTCCSEEEEBCHHHHTTTCSSCBCSTTCEETTGG
T ss_pred chHHhcccCCceEEEeHHHHhCCCCCccCcccccccccc
Confidence 9996 7899999999999999999764
No 15
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=4.4e-60 Score=466.95 Aligned_cols=245 Identities=19% Similarity=0.272 Sum_probs=223.0
Q ss_pred CcccCCCCCCCCceeEEEec-ceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFL-TKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQ 80 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~ 80 (293)
++..|++.+....+. .. ........+.||..|.++++++ +||||+||.|+|++||||++|||++|+|||+|+.+
T Consensus 96 ~d~lG~piD~~g~i~---~~~~~~pi~~~~p~~~~r~~~~e~l--~TGir~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~ 170 (473)
T 1sky_E 96 FNVLGEPIDLEGDIP---ADARRDPIHRPAPKFEELATEVEIL--ETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQE 170 (473)
T ss_dssp ECTTSCBCSSSCCCC---TTSCEEESCCCCCCGGGBCCSCCEE--CCSCHHHHHHSCEETTCEEEEECCSSSCHHHHHHH
T ss_pred EeecCCccCcccccC---CCceeecccccCcchhhhcccCccc--cccchHHHHHhhhccCCEEEEECCCCCCccHHHHH
Confidence 567888887765542 22 2334556677899999999999 99999999999999999999999999999999999
Q ss_pred HHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 81 ICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 81 I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
|+++..+. ...+|||++||||++++.++.+++.+.++|+|+++|++++++||+.|++++++++++|||
T Consensus 171 l~~~~~~~------------~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAEy 238 (473)
T 1sky_E 171 LIHNIAQE------------HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEY 238 (473)
T ss_dssp HHHHHHHH------------TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhc------------cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 99887531 246889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVS 240 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dp 240 (293)
|++++|+|||+++||+||||+|+||+|+++||||+++||||++|+.|++|||||++. ++||||+|++|++|+||++||
T Consensus 239 Frd~~G~~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l~~l~ERa~~~--~~GSIT~i~tv~~~~dD~~dp 316 (473)
T 1sky_E 239 FRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITST--AKGSITSIQAIYVPADDYTDP 316 (473)
T ss_dssp HHHHSCCEEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHHHTTSSCB--SSCEEEEEEECCCSTTCSSSH
T ss_pred HHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHHhcCC--CCCceEEEEEEEecCCCCCCc
Confidence 999449999999999999999999999999999999999999999999999999973 689999999999999999999
Q ss_pred cccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 241 AARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 241 i~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
|||+ +|+.+++|||||+..|.||.+
T Consensus 317 i~~~~~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~ 354 (473)
T 1sky_E 317 APATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRAL 354 (473)
T ss_dssp HHHHHHTTCSEEEEBCTTHHHHTCSSCBCTTTCCBTTC
T ss_pred chHHHHhhcCceEEecHHHHhCCCCCcccccccccccc
Confidence 9985 888999999999999999965
No 16
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=3.5e-60 Score=458.01 Aligned_cols=219 Identities=16% Similarity=0.223 Sum_probs=204.1
Q ss_pred ecccccCCCccccCCC----CccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCC
Q psy5595 25 EKNFVSQEGERSFTPR----DLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSE 100 (293)
Q Consensus 25 ~~~~~~~~p~~r~~p~----e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~ 100 (293)
+++..+.+|..|..++ +++ +||+|+||+++||++|||++|||++|+|||+|+++|++++.+. .
T Consensus 136 Fe~ltp~yP~er~~Le~~~~~~~--~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~-----------~ 202 (422)
T 3ice_A 136 FENLTPLHANSRLRMERGNGSTE--DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN-----------H 202 (422)
T ss_dssp TTTSCEESCCSBCCCCCTTCCTT--HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH-----------C
T ss_pred eccccccCCCCccccccCCCCcc--cccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc-----------C
Confidence 3556778899999998 788 9999999999999999999999999999999999999988531 2
Q ss_pred CceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHH
Q psy5595 101 DNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYA 180 (293)
Q Consensus 101 ~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a 180 (293)
++..|||++||||++|+++|.+++ ++++|++|+|+||.+|++++++|+++|||||++ |+||||++||+||||
T Consensus 203 ~~v~~I~~lIGER~~Ev~~~~~~~-------~~~vV~atadep~~~r~~~a~~alt~AEyfrd~-G~dVLil~DslTR~A 274 (422)
T 3ice_A 203 PDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH-KKDVIILLDSITRLA 274 (422)
T ss_dssp TTSEEEEEEESSCHHHHHHHHTTC-------SSEEEEECTTSCHHHHHHHHHHHHHHHHHHHHT-SCEEEEEEECHHHHH
T ss_pred CCeeEEEEEecCChHHHHHHHHHh-------CeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhc-CCCEEEEEeCchHHH
Confidence 456899999999999999999887 479999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEec-CCCcccccccc-------------cc
Q psy5595 181 EALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMP-NDDFKVSAARE-------------EV 246 (293)
Q Consensus 181 ~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~-~~d~~dpi~~~-------------~l 246 (293)
+|+||+++++||+|+ +|||+++|+.+++|||||++++ ++||||+|+||++| +||++|||+|+ +|
T Consensus 275 ~A~revs~~~Ge~ps-~Gyp~~~~~~~~rl~erA~~~~-~~GSIT~i~tvlv~tgdd~~dpI~d~~~~i~dg~ivLsR~L 352 (422)
T 3ice_A 275 RAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVE-EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKI 352 (422)
T ss_dssp HHHHHHSCCSSCBCS-SSCBHHHHHHHHHHHTTCEEES-SSCEEEEEEEECCSSSCHHHHHHHHHHHHHCSEEEEBCHHH
T ss_pred HHHHHHHHhcCCCCC-CCcCHHHHhhhHHHHHhccccC-CCcceeEEEEEEecCCCcccchHHHHhcccCCceEEEcHHH
Confidence 999999999999999 9999999999999999999986 69999999999999 78899999996 88
Q ss_pred CCCCCCCCcccccccchhhh
Q psy5595 247 PGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 247 a~~r~~Pai~~~~~~s~~~r 266 (293)
+.+++|||||+..|.||.+.
T Consensus 353 a~~giyPAIDvl~S~SR~~~ 372 (422)
T 3ice_A 353 AEKRVFPAIDYNRSGTRKEE 372 (422)
T ss_dssp HHTTCSSCBCTTTCEESSGG
T ss_pred HhcCCCCccCccccccccch
Confidence 99999999999999999764
No 17
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=3.2e-40 Score=314.47 Aligned_cols=241 Identities=24% Similarity=0.309 Sum_probs=212.0
Q ss_pred CcccCCCCCCCC-ceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHH
Q psy5595 2 KAVVGEEALTPD-DLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQ 80 (293)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~ 80 (293)
.+..|++.+... .+...+ .......+.+|..|..+++++ .||+++||.++||++||+++|+|++|+|||||+.+
T Consensus 16 ~~~~g~p~d~~~~~~~~~~---~~~i~~~~~~~i~~~~l~~~~--~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~ 90 (347)
T 2obl_A 16 IDGIGRPMESNIVAPYLPF---ERSLYAEPPDPLLRQVIDQPF--ILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGM 90 (347)
T ss_dssp ECTTSCBCSCCSSCCCCCE---EEESCCCCSCSTTCCCCCSEE--CCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHH
T ss_pred ECCCCCcCCCCCCCCCCCC---cccccCCCCCCeeecccceec--CCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHH
Confidence 467899998876 543222 233455666789999999999 89999999999999999999999999999999999
Q ss_pred HHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHH
Q psy5595 81 ICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160 (293)
Q Consensus 81 I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEy 160 (293)
|+++.. .+..++.++|++.+++.++...+.+ +.+++++++++++++|+..|+.+++.++++|||
T Consensus 91 I~g~~~---------------~~~g~i~~~G~~~~ev~~~i~~~~~-~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~ 154 (347)
T 2obl_A 91 ICNGAS---------------ADIIVLALIGERGREVNEFLALLPQ-STLSKCVLVVTTSDRPALERMKAAFTATTIAEY 154 (347)
T ss_dssp HHHHSC---------------CSEEEEEEESCCHHHHHHHHTTSCH-HHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCC---------------CCEEEEEEecccHHHHHHHHHhhhh-hhhhceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 999973 4577889999998888776655333 357899999999999999999999999999999
Q ss_pred HHHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCcccc
Q psy5595 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVS 240 (293)
Q Consensus 161 fr~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dp 240 (293)
|+++ |++|++++|++++|+.++|++++++++||.+.|||+++++.+.+++||+++. ++||||+++||+++++|+++|
T Consensus 155 ~~~~-~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~--~~GsiT~~~tVl~~thdl~~~ 231 (347)
T 2obl_A 155 FRDQ-GKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPA--PKGSITAIYTVLLESDNVNDP 231 (347)
T ss_dssp HHTT-TCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEEC--SSSEEEEEEEEECCSSCCCCH
T ss_pred HHhc-cccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCC--CCCCeeeEEEEEEeCCCCCCh
Confidence 9997 9999999999999999999999999999999999999999999999999873 479999999999999999999
Q ss_pred cccc-------------ccCCCCCCCCcccccccchhhh
Q psy5595 241 AARE-------------EVPGRRGFPGYMYTNLATIYER 266 (293)
Q Consensus 241 i~~~-------------~la~~r~~Pai~~~~~~s~~~r 266 (293)
++|+ .++..++||++|+..|.|+++.
T Consensus 232 i~d~v~~i~dG~Ivl~~~l~~~~~~Paid~~~S~sr~~~ 270 (347)
T 2obl_A 232 IGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMH 270 (347)
T ss_dssp HHHHHHHHCSEEEEBCHHHHTTTCSSCBCGGGCEETTHH
T ss_pred hhhheEEeeCcEEEEeCCHHHcCCCCCcCcccccccccc
Confidence 9986 5678889999999999999753
No 18
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=5.7e-35 Score=286.09 Aligned_cols=243 Identities=20% Similarity=0.232 Sum_probs=205.5
Q ss_pred CcccCCCCCCCCceeEEEecceeecccccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHH
Q psy5595 2 KAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I 81 (293)
+++.|++.+....+.. .........+.++..|..++..+ .||+++||.++||++||+++|+|++|+|||||+.+|
T Consensus 103 ~~~lg~p~d~~~~~~~---~~~~~i~~~~~~~l~~~~v~~~~--~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~I 177 (438)
T 2dpy_A 103 LDGGGKPLDGLPAPDT---LETGALITPPFNPLQRTPIEHVL--DTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMM 177 (438)
T ss_dssp ECTTCCBSSSSCCCCC---SCEEESCCCCCCTTTSCCCCSBC--CCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHH
T ss_pred hhccCCccCCCCCccc---cccccccCCCCCceEEeccceec--CCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 4567777644333211 11111222344578888888888 889999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHH
Q psy5595 82 CRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf 161 (293)
+++.. .+..++.++|+|.+++.++.+.+.+.+.+++++.+++++++++..++.+++.+++.||||
T Consensus 178 ag~~~---------------~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~ 242 (438)
T 2dpy_A 178 ARYTR---------------ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDF 242 (438)
T ss_dssp HHHSC---------------CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hcccC---------------CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 99973 356788899999988888876655445577899999999999999999999999999999
Q ss_pred HHhcCCceEEEecchhHHHHHHHHHhhhcCCCCCCCCCCCchhhhHHHHhhhhcccCCCCcceeeeeEEEecCCCccccc
Q psy5595 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDFKVSA 241 (293)
Q Consensus 162 r~~~G~~VLli~Dsltr~a~A~reisl~~ge~p~~~gyp~~lf~~la~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi 241 (293)
+++ +++|+.++|++++|+.+++++++++++||...|||++.++.+.+++||+++.++++||||+++||++.++|+++|+
T Consensus 243 ~~~-~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~i 321 (438)
T 2dpy_A 243 RDR-GQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPI 321 (438)
T ss_dssp HTT-TCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCCHH
T ss_pred HhC-CCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccchh
Confidence 986 8999999999999999999999999999999999999999999999999874213599999999999999999999
Q ss_pred ccc-------------ccCCCCCCCCcccccccchhh
Q psy5595 242 ARE-------------EVPGRRGFPGYMYTNLATIYE 265 (293)
Q Consensus 242 ~~~-------------~la~~r~~Pai~~~~~~s~~~ 265 (293)
+|+ .++..++||++|+..+.+++.
T Consensus 322 ad~v~~l~dG~Ivl~~~~~~~~~~Paidv~~s~sR~~ 358 (438)
T 2dpy_A 322 ADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAM 358 (438)
T ss_dssp HHHHHHHSSEEEEECHHHHHTTCSSCEEEEEEEETTH
T ss_pred hceEEEEeCcEEEEeCCHHHccCCCCcCCcccccccc
Confidence 986 556778999999999998864
No 19
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=98.04 E-value=2.5e-05 Score=67.72 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=49.8
Q ss_pred CCCccccCCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchh
Q psy5595 39 PRDLIGDSSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMET 116 (293)
Q Consensus 39 p~e~l~~~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~ 116 (293)
|-+.+ .||+..+|-++. +-+|+-+.|.|+||+|||+|+.+++.++.+. .+..++|....+..+.
T Consensus 8 ~i~ri--~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~------------~~~~v~~~s~E~~~~~ 73 (251)
T 2zts_A 8 PVRRV--KSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE------------YGEPGVFVTLEERARD 73 (251)
T ss_dssp CCCEE--CCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH------------HCCCEEEEESSSCHHH
T ss_pred CCCee--cCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh------------cCCCceeecccCCHHH
Confidence 44457 899999999997 8899999999999999999999988765321 1234667666665544
Q ss_pred H
Q psy5595 117 A 117 (293)
Q Consensus 117 ~ 117 (293)
.
T Consensus 74 ~ 74 (251)
T 2zts_A 74 L 74 (251)
T ss_dssp H
T ss_pred H
Confidence 3
No 20
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.95 E-value=2.4e-05 Score=67.77 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=39.1
Q ss_pred CccccCCCceeeeecc--cccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 41 DLIGDSSGKRAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 41 e~l~~~TGiraID~l~--pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+ .||+..+|-++ -+.+|+-++|.|++|+|||+|+.+|+.++
T Consensus 4 ~~i--~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 4 IQI--TTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp CEE--CCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEe--cCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 345 89999999998 58899999999999999999999999875
No 21
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.95 E-value=2.6e-05 Score=66.68 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=37.8
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.||++.+|-++. +.+|+-++|.|++|+|||+|+.+|+....
T Consensus 6 ~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 6 STGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 799999999985 89999999999999999999999997653
No 22
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.89 E-value=1.5e-05 Score=75.32 Aligned_cols=108 Identities=10% Similarity=0.170 Sum_probs=69.0
Q ss_pred CCCceeeeeccc------ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHH
Q psy5595 46 SSGKRAIDVMNS------IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARF 119 (293)
Q Consensus 46 ~TGiraID~l~p------igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~ 119 (293)
.||+..+|.++- +-+| .+.|+|+||+|||+|+.+++.++.+. ..+..|+|+-.-+..+.. .
T Consensus 8 sTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~-----------g~g~~vlyId~E~s~~~~-r 74 (333)
T 3io5_A 8 RTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQ-----------YPDAVCLFYDSEFGITPA-Y 74 (333)
T ss_dssp CCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHH-----------CTTCEEEEEESSCCCCHH-H
T ss_pred cCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhc-----------CCCceEEEEeccchhhHH-H
Confidence 799999999998 8899 99999999999999999998887531 013578886544433221 1
Q ss_pred HHHhhhhCCc-cccEEEEeeCCCCchhhhhchHHHHHHHHHHH--HHhcCCceEEEecchhHHH
Q psy5595 120 FKQDFEENGS-MENVCLFLNLANDPTIERIITPRLALTTAEFL--AYQCEKHVLVILTDMSSYA 180 (293)
Q Consensus 120 ~~~~l~~~g~-~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyf--r~~~G~~VLli~Dsltr~a 180 (293)
.+.+ |+ .++ ++++. .+. .++. ++.+++.+ ... ++-.|||+||++-+.
T Consensus 75 -a~~l---Gvd~d~-llv~~-~~~--~E~~-----~l~i~~~l~~i~~-~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 75 -LRSM---GVDPER-VIHTP-VQS--LEQL-----RIDMVNQLDAIER-GEKVVVFIDSLGNLA 124 (333)
T ss_dssp -HHHT---TCCGGG-EEEEE-CSB--HHHH-----HHHHHHHHHTCCT-TCCEEEEEECSTTCB
T ss_pred -HHHh---CCCHHH-eEEEc-CCC--HHHH-----HHHHHHHHHHhhc-cCceEEEEecccccc
Confidence 1222 32 233 33332 222 2332 13334443 233 678999999998764
No 23
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.89 E-value=2.2e-05 Score=74.77 Aligned_cols=109 Identities=17% Similarity=0.269 Sum_probs=69.3
Q ss_pred CccccCCCceeeeeccc---ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhH
Q psy5595 41 DLIGDSSGKRAIDVMNS---IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETA 117 (293)
Q Consensus 41 e~l~~~TGiraID~l~p---igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~ 117 (293)
+.+ .||+..+|-++. +.+|.-+.|+|++|+|||+|+.+++.++.+ ....++|+..-+..+..
T Consensus 40 ~~i--~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-------------~gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 40 EVI--PTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-------------MGGVAAFIDAEHALDPV 104 (356)
T ss_dssp CEE--CCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-------------TTCCEEEEESSCCCCHH
T ss_pred cee--cCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-------------cCCeEEEEecccccchH
Confidence 456 899999999988 779999999999999999999999988753 12345665433222221
Q ss_pred HHHHHhhhhCCcc-ccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHH
Q psy5595 118 RFFKQDFEENGSM-ENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYA 180 (293)
Q Consensus 118 ~~~~~~l~~~g~~-~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a 180 (293)
..+.+ |+. ++ ..+.. .+. ....+.+++.+... ++.-++|+|+++.+.
T Consensus 105 --ra~rl---gv~~~~-l~i~~-~~~--------~e~~l~~~~~l~~~-~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 105 --YAKNL---GVDLKS-LLISQ-PDH--------GEQALEIVDELVRS-GVVDLIVVDSVAALV 152 (356)
T ss_dssp --HHHHH---TCCGGG-CEEEC-CSS--------HHHHHHHHHHHHHT-SCCSEEEEECTTTCC
T ss_pred --HHHHc---CCchhh-hhhhh-ccC--------HHHHHHHHHHHhhh-cCCCeEEehHhhhhc
Confidence 22222 211 22 22222 111 22334556666555 566788999998765
No 24
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.88 E-value=2.6e-05 Score=73.70 Aligned_cols=109 Identities=17% Similarity=0.314 Sum_probs=70.3
Q ss_pred CccccCCCceeeeeccc---ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhH
Q psy5595 41 DLIGDSSGKRAIDVMNS---IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETA 117 (293)
Q Consensus 41 e~l~~~TGiraID~l~p---igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~ 117 (293)
+.+ .||+..+|-++. +-+|.-++|.|++|+|||+|+.+++.++.+. +..++|+-..+..+..
T Consensus 40 ~~i--~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-------------g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 40 SVI--PTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-------------GGIAAFIDAEHALDPE 104 (349)
T ss_dssp CEE--CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-------------TCCEEEEESSCCCCHH
T ss_pred Ccc--ccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-------------CCeEEEEECCCCcCHH
Confidence 456 899999999987 5699999999999999999999999887531 2346666554433321
Q ss_pred HHHHHhhhhCCc-cccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHH
Q psy5595 118 RFFKQDFEENGS-MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYA 180 (293)
Q Consensus 118 ~~~~~~l~~~g~-~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a 180 (293)
..+.+ |+ .++ +.+.. .+ ..++ .+.+++.+..+ ++.-+||+|+++.+.
T Consensus 105 --~a~~l---G~~~~~-l~i~~-~~--~~e~------~l~~~~~l~~~-~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 105 --YAKKL---GVDTDS-LLVSQ-PD--TGEQ------ALEIADMLVRS-GALDIIVIDSVAALV 152 (349)
T ss_dssp --HHHHT---TCCGGG-CEEEC-CS--SHHH------HHHHHHHHHTT-TCCSEEEEECGGGCC
T ss_pred --HHHHc---CCCHHH-eEEec-CC--CHHH------HHHHHHHHHhc-CCCCEEEEcChHhhc
Confidence 11222 22 122 22222 11 1222 34456666555 567799999999765
No 25
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.86 E-value=2.8e-05 Score=66.29 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=36.4
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
.||+..+|-++. +.+|+-++|.|++|+|||+|+.+|+.
T Consensus 3 ~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 3 STGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 799999999996 99999999999999999999999988
No 26
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.85 E-value=3.6e-05 Score=73.12 Aligned_cols=110 Identities=16% Similarity=0.269 Sum_probs=70.4
Q ss_pred CCccccCCCceeeeeccc---ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchh
Q psy5595 40 RDLIGDSSGKRAIDVMNS---IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMET 116 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~p---igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~ 116 (293)
.+.+ .||+..+|-++. +-+|+-+.|.|++|+|||+|+.+++.++.+. +..++|+-.-+..+.
T Consensus 41 ~~~i--~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-------------g~~vlyid~E~s~~~ 105 (356)
T 1u94_A 41 VETI--STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------------GKTCAFIDAEHALDP 105 (356)
T ss_dssp CCEE--CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-------------TCCEEEEESSCCCCH
T ss_pred CCcc--cCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-------------CCeEEEEeCCCCccH
Confidence 3456 899999999987 7799999999999999999999999887531 224556554333222
Q ss_pred HHHHHHhhhhCCc-cccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHH
Q psy5595 117 ARFFKQDFEENGS-MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYA 180 (293)
Q Consensus 117 ~~~~~~~l~~~g~-~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a 180 (293)
. ..+.+ |+ .++ ..+. ..+ ..+ ..+.+++.+... ++.-+||+|+++.+.
T Consensus 106 ~--~a~~~---g~~~~~-l~i~-~~~--~~e------~~~~~~~~l~~~-~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 106 I--YARKL---GVDIDN-LLCS-QPD--TGE------QALEICDALARS-GAVDVIVVDSVAALT 154 (356)
T ss_dssp H--HHHHT---TCCGGG-CEEE-CCS--SHH------HHHHHHHHHHHH-TCCSEEEEECGGGCC
T ss_pred H--HHHHc---CCChhh-eeee-CCC--CHH------HHHHHHHHHHhc-cCCCEEEEcCHHHhc
Confidence 1 11222 21 122 2222 221 122 234556666655 566789999998765
No 27
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.84 E-value=4.3e-05 Score=65.52 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=36.9
Q ss_pred CCCceeeeecc--cccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 46 SSGKRAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 46 ~TGiraID~l~--pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.||+..+|-++ -+.+|+.++|+|++|+|||||+.+|+...
T Consensus 8 ~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 8 STGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp CCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999877 68899999999999999999999998865
No 28
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.81 E-value=6.8e-05 Score=69.51 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=73.2
Q ss_pred CCccccCCCceeeeecc--cccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCcc--ch
Q psy5595 40 RDLIGDSSGKRAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVN--ME 115 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~--pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer--~e 115 (293)
.+.+ .||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.++.+.. . +...+..++|+..-+. .+
T Consensus 86 ~~~i--~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~----~---~gg~~~~vlyi~~e~~~~~~ 156 (324)
T 2z43_A 86 VKKI--STGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP----E---KGGLSGKAVYIDTEGTFRWE 156 (324)
T ss_dssp CCEE--CCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG----G---GTCCSCEEEEEESSSCCCHH
T ss_pred CCcc--cCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc----c---cCCCCCeEEEEECCCCCCHH
Confidence 3456 89999999998 588999999999999999999999998864310 0 0001335677655543 34
Q ss_pred hHHHHHHhhhh--CCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHH
Q psy5595 116 TARFFKQDFEE--NGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEA 182 (293)
Q Consensus 116 ~~~~~~~~l~~--~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A 182 (293)
....+.+.+.- ..++++ +.+....+ .++.. ..+..++.+..+..+--+||+|+++.+..+
T Consensus 157 ~l~~~~~~~g~~~~~~~~~-l~~~~~~~---~~~~~---~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 157 RIENMAKALGLDIDNVMNN-IYYIRAIN---TDHQI---AIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHTTCCHHHHHHT-EEEEECCS---HHHHH---HHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHhCCCHHHHhcc-EEEEeCCC---HHHHH---HHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 44333322210 001123 23332221 12211 122233333322145679999999998764
No 29
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.78 E-value=4e-05 Score=86.66 Aligned_cols=112 Identities=15% Similarity=0.264 Sum_probs=75.5
Q ss_pred CCCCccccCCCceeeeeccc---ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccc
Q psy5595 38 TPRDLIGDSSGKRAIDVMNS---IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNM 114 (293)
Q Consensus 38 ~p~e~l~~~TGiraID~l~p---igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~ 114 (293)
...+.+ .||+..+|.++. +-+|..++|+||||+|||+|+.+++.++.+ .+..|+|...-+..
T Consensus 1403 ~~~~~i--sTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~-------------~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1403 MDVETI--STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------------EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp TSCCEE--CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-------------TTCCEEEECTTSCC
T ss_pred cccccc--cCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-------------cCCcEEEEEccccc
Confidence 345567 899999999999 889999999999999999999999998864 23456676655442
Q ss_pred hhHHHHHHhhhhCCc-cccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHH
Q psy5595 115 ETARFFKQDFEENGS-MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYA 180 (293)
Q Consensus 115 e~~~~~~~~l~~~g~-~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a 180 (293)
.... .+.+ |+ ++. +.+.+.+. .+ .++.+.+++..+ ++--+||+|++.-|.
T Consensus 1468 ~~l~--a~~~---G~dl~~--l~v~~~~~--~E------~~l~~~~~lvr~-~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1468 DPIY--ARKL---GVDIDN--LLCSQPDT--GE------QALEICDALARS-GAVDVIVVDSVAALT 1518 (2050)
T ss_dssp CHHH--HHHT---TCCTTT--CEEECCSS--HH------HHHHHHHHHHHH-TCCSEEEESCGGGCC
T ss_pred CHHH--HHHc---CCCchh--ceeecCCh--HH------HHHHHHHHHHhc-CCCCEEEEcChhHhc
Confidence 2211 1222 21 122 22334332 22 455667777666 778899999996443
No 30
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.76 E-value=4.2e-05 Score=72.95 Aligned_cols=110 Identities=18% Similarity=0.273 Sum_probs=71.3
Q ss_pred CCccccCCCceeeeeccc---ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchh
Q psy5595 40 RDLIGDSSGKRAIDVMNS---IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMET 116 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~p---igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~ 116 (293)
.+.+ .||+..+|.++. +-+|.-+.|.|++|+|||+|+.+++.++.+. +..++|+-.-...+.
T Consensus 52 ~~~i--~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~-------------g~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 52 VQVV--STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-------------GGTCAFIDAEHALDP 116 (366)
T ss_dssp CCEE--CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-------------TCCEEEEESSCCCCH
T ss_pred Ccee--cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-------------CCeEEEEECCCChhH
Confidence 3456 899999999987 6799999999999999999999999887531 234666665544333
Q ss_pred HHHHHHhhhhCCc-cccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHH
Q psy5595 117 ARFFKQDFEENGS-MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYA 180 (293)
Q Consensus 117 ~~~~~~~l~~~g~-~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a 180 (293)
. +.+.+ |+ .++ +++. ..+. .+ ..+.+.+.+... +..-+||+|+++.+.
T Consensus 117 ~--~a~~~---g~d~~~-l~i~-~~~~--~e------~~l~~l~~l~~~-~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 117 V--YARAL---GVNTDE-LLVS-QPDN--GE------QALEIMELLVRS-GAIDVVVVDSVAALT 165 (366)
T ss_dssp H--HHHHT---TCCGGG-CEEE-CCSS--HH------HHHHHHHHHHTT-TCCSEEEEECTTTCC
T ss_pred H--HHHHc---CCCHHH-ceee-cCCc--HH------HHHHHHHHHHhc-CCCCEEEEeChHHhc
Confidence 2 11222 22 122 2222 2221 22 234556666655 566789999998764
No 31
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.70 E-value=9.7e-05 Score=83.56 Aligned_cols=109 Identities=15% Similarity=0.236 Sum_probs=80.0
Q ss_pred CCccccCCCceeeeecc---cccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchh
Q psy5595 40 RDLIGDSSGKRAIDVMN---SIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMET 116 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~---pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~ 116 (293)
.+.+ .|||..+|-++ -+-+|+.++|+|++|+|||+|+.+++.++.+ .+..|+|+-.-+..++
T Consensus 1059 ~~~i--~TGi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k-------------~Ge~~~Fit~ee~~~~ 1123 (2050)
T 3cmu_A 1059 VETI--STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------------EGKTCAFIDAEHALDP 1123 (2050)
T ss_dssp CCEE--CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-------------TTCCEEEECTTSCCCH
T ss_pred cccc--cCCcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHH-------------cCCeEEEEEccccHHH
Confidence 4456 79999999988 4889999999999999999999999998865 2457889988887666
Q ss_pred HHHHHHhhhhCCc-cccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHH
Q psy5595 117 ARFFKQDFEENGS-MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSY 179 (293)
Q Consensus 117 ~~~~~~~l~~~g~-~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~ 179 (293)
... . ..|. +++-. +. ..+ ....+..+.+.++.. ++--+||+||++.+
T Consensus 1124 L~a--~---~~G~dl~~l~-~~-~pd--------~~e~~~~i~~~l~~~-~~~dlvVIDsl~~L 1171 (2050)
T 3cmu_A 1124 IYA--R---KLGVDIDNLL-CS-QPD--------TGEQALEICDALARS-GAVDVIVVDSVAAL 1171 (2050)
T ss_dssp HHH--H---HTTCCTTTCE-EE-CCS--------SHHHHHHHHHHHHHH-TCCSEEEESCGGGC
T ss_pred HHH--H---HcCCChhHhe-ee-cCc--------chHHHHHHHHHHHHh-CCCCEEEECCcccc
Confidence 551 1 1121 12212 22 222 124567778888876 78889999999887
No 32
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.61 E-value=8e-05 Score=83.18 Aligned_cols=115 Identities=13% Similarity=0.202 Sum_probs=77.1
Q ss_pred CCCccccCCCceeeeeccc---ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccch
Q psy5595 39 PRDLIGDSSGKRAIDVMNS---IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNME 115 (293)
Q Consensus 39 p~e~l~~~TGiraID~l~p---igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e 115 (293)
..+.+ .||+..+|-++. +-+|+.++|+|+||+|||+|+.+++.++.+ .+..|+|+...+..+
T Consensus 11 ~~~~i--sTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~-------------~G~~vlYI~te~~~~ 75 (1706)
T 3cmw_A 11 DVETI--STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------------EGKTCAFIDAEHALD 75 (1706)
T ss_dssp -CCEE--CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-------------TTCCEEEECTTSCCC
T ss_pred cCccc--ccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhh-------------CCCceEEEEecCccH
Confidence 34556 899999999975 889999999999999999999999988753 134688888877654
Q ss_pred hHHHHHHhhhhCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHHH
Q psy5595 116 TARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEAL 183 (293)
Q Consensus 116 ~~~~~~~~l~~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A~ 183 (293)
+.. .+.+. .. +++.. +... + .. .....+.+.+... ++.-+||+||++.+....
T Consensus 76 ~l~--~~~lg-~d-l~~i~-i~~p-~--t~------e~l~~ll~~L~~~-~~~~LVVIDSLt~L~~~~ 128 (1706)
T 3cmw_A 76 PIY--ARKLG-VD-IDNLL-CSQP-D--TG------EQALEICDALARS-GAVDVIVVDSVAALTPKA 128 (1706)
T ss_dssp HHH--HHHTT-CC-GGGCE-EECC-S--SH------HHHHHHHHHHHHH-TCCSEEEESCSTTCCCHH
T ss_pred HHH--HHhhc-cC-cccee-eecc-C--cH------HHHHHHHHHHHhc-cCCCEEEEcchhhhcccc
Confidence 433 12221 11 22222 2222 1 12 2234455666665 677899999999887643
No 33
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.58 E-value=0.0003 Score=65.85 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=40.2
Q ss_pred CCccccCCCceeeeecc--cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 40 RDLIGDSSGKRAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~--pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.+ .||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.++.
T Consensus 101 ~~~i--~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~ 147 (343)
T 1v5w_A 101 VFHI--TTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQ 147 (343)
T ss_dssp CCCB--CCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred ccee--ecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456 89999999998 588999999999999999999999999864
No 34
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.56 E-value=0.00021 Score=65.64 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=40.0
Q ss_pred CCccccCCCceeeeecc--cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 40 RDLIGDSSGKRAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~--pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.+ .||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.++.
T Consensus 77 ~~~i--~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~ 123 (322)
T 2i1q_A 77 VWKL--STSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ 123 (322)
T ss_dssp CCEE--CCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCee--cCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4456 89999999998 578999999999999999999999998753
No 35
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.54 E-value=2.3e-05 Score=65.63 Aligned_cols=30 Identities=10% Similarity=0.230 Sum_probs=26.6
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.+|+.++|+|++|+|||||+..|++...
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999999999998873
No 36
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.51 E-value=8.2e-05 Score=64.52 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=36.1
Q ss_pred CCCceeeeecc--cccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 46 SSGKRAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 46 ~TGiraID~l~--pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.||+..+|-++ -+.+|+-++|+|++|+|||||+.+|+..
T Consensus 13 ~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 13 KSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 79999999988 6999999999999999999999999843
No 37
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.45 E-value=0.00011 Score=63.59 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=37.2
Q ss_pred CCCceeeeecc--cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 46 SSGKRAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 46 ~TGiraID~l~--pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.||++.+|-++ -+-+|+-++|.|++|+|||+|+.+++.+..
T Consensus 6 ~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 6 KTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp CCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 79999999986 477999999999999999999999988764
No 38
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.44 E-value=0.00034 Score=65.81 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=39.8
Q ss_pred CCccccCCCceeeeecc--cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 40 RDLIGDSSGKRAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~--pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.+ .||+..+|-++ -+-+|+-++|+|++|+|||+|+.+++....
T Consensus 110 ~~~i--sTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 110 IGRI--STGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp CCEE--CCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCee--cCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456 89999999985 577999999999999999999999998863
No 39
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.42 E-value=0.00091 Score=61.75 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=39.7
Q ss_pred CccccCCCceeeeeccc-ccCCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 41 DLIGDSSGKRAIDVMNS-IARGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 41 e~l~~~TGiraID~l~p-igrGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
+.+ .||+..+|-++- +-+|+-++|.|+||+|||+|+.+++.++++
T Consensus 49 ~~i--~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 49 TGV--PSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp CSB--CCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCc--cCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345 899999998874 779999999999999999999999988753
No 40
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.40 E-value=0.00013 Score=60.51 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=25.4
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+|+.++|+|++|+|||+|+..|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999998773
No 41
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.36 E-value=0.00042 Score=66.80 Aligned_cols=45 Identities=9% Similarity=0.239 Sum_probs=39.7
Q ss_pred CCccccCCCceeeeecc--cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 40 RDLIGDSSGKRAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~--pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.+ .||+..+|-++ -|-+|+-+.|+|++|+|||+|+.+++....
T Consensus 157 ~~~i--~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 157 LICL--TTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp SCEE--CCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcc--ccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 3456 89999999998 688999999999999999999999886653
No 42
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.26 E-value=0.00011 Score=66.03 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=44.6
Q ss_pred CccccCCCCccccCCCceeeeeccc-ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 33 GERSFTPRDLIGDSSGKRAIDVMNS-IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 33 p~~r~~p~e~l~~~TGiraID~l~p-igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
||......+.+ .||+.-+|-++. +-+|+-++|.|++|+|||||+.+|+....
T Consensus 3 ~~~~~~~~~~i--~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 3 THKPINILEAF--AAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp CCCCCCHHHHH--HSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cceecCHHHHh--cCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 67777777778 899999987764 55999999999999999999999997654
No 43
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.19 E-value=0.00084 Score=61.49 Aligned_cols=101 Identities=6% Similarity=0.044 Sum_probs=55.8
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchh---HHHHHHhhhhCCccccEEE
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMET---ARFFKQDFEENGSMENVCL 135 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~---~~~~~~~l~~~g~~~~tvv 135 (293)
+.++.++|.|++|+|||+|+..+++...... ........++++-+...... ...+.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~-------- 106 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARA-------SSLGVLVKPIYVNARHRETPYRVASAIAEAVGVR-------- 106 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHH-------HHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCC--------
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHH-------hccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCC--------
Confidence 6788999999999999999999998763200 00001345666666554322 23333333110
Q ss_pred EeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHHHH
Q psy5595 136 FLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEA 182 (293)
Q Consensus 136 v~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a~A 182 (293)
......+.. . .--.+.+++... ++.++|++|++-++...
T Consensus 107 -~~~~~~~~~-~-----~~~~l~~~l~~~-~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 107 -VPFTGLSVG-E-----VYERLVKRLSRL-RGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp -CCSSCCCHH-H-----HHHHHHHHHTTS-CSEEEEEEETTTHHHHS
T ss_pred -CCCCCCCHH-H-----HHHHHHHHHhcc-CCeEEEEEccHhhhccc
Confidence 000111111 1 111222334333 77899999999888654
No 44
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=97.18 E-value=7.7e-05 Score=74.92 Aligned_cols=62 Identities=32% Similarity=0.552 Sum_probs=51.6
Q ss_pred EEEecCCCcccccc--------ccccCCCCCCCCcccccccchhhhccccc---cCCccccccceeecCCCCC
Q psy5595 229 ILTMPNDDFKVSAA--------REEVPGRRGFPGYMYTNLATIYERAGRVE---GRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 229 ~v~~~~~d~~dpi~--------~~~la~~r~~Pai~~~~~~s~~~r~g~~~---~~~Gs~~~~~~~~~~~~~~ 290 (293)
=|++-.||++-..- -+++|.+++||++.++++.++|||+|++. .+.||+|++++|++|+||-
T Consensus 319 dVLl~~Ds~tR~A~A~rEis~~lge~P~~~GYp~~l~s~l~~l~ERAg~~~~~~~~~GSIT~i~~v~~~gdD~ 391 (578)
T 3gqb_A 319 SVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDM 391 (578)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHTTCCCCSSSSCTTHHHHHHHHHTTCEEEECTTSCEEEEEEEEECCCTTTCT
T ss_pred CEEEEecChHHHHHHHHHHHHhccCCCccccCCchhhhHHHHHHHhhcCcccCCCCCcceEEEEEEEcCCCCC
Confidence 35566777764322 24899999999999999999999999987 5899999999999998874
No 45
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.15 E-value=0.002 Score=59.23 Aligned_cols=28 Identities=4% Similarity=0.065 Sum_probs=24.4
Q ss_pred cCCc--eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQ--KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQ--r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..++ .++|.|++|+|||+|+..+++...
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3446 899999999999999999998874
No 46
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=97.14 E-value=7.7e-05 Score=75.24 Aligned_cols=61 Identities=38% Similarity=0.569 Sum_probs=49.8
Q ss_pred EEecCCCcccccc--------ccccCCCCCCCCcccccccchhhhccccc-----cCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAA--------REEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~--------~~~la~~r~~Pai~~~~~~s~~~r~g~~~-----~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++-.||++-..- -+++|.+++||++.++++.++|||+|++. .+.||+|++++|++|+||-
T Consensus 331 VLl~~Ds~tR~A~A~rEiS~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~~gdD~ 404 (600)
T 3vr4_A 331 VAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDI 404 (600)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTTCCBCGGGCBTTHHHHHHHHHTTSEEEECSSTTCCEEEEEEEEEECCSSSCT
T ss_pred EEEEecchHHHHHHHHHHHhccCCCCccccCCchhhhHHHHHHHhhccccccCCCCCCcceEEEEEEECCCCCC
Confidence 3444566663322 24889999999999999999999999986 5799999999999999884
No 47
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.09 E-value=0.00093 Score=74.72 Aligned_cols=110 Identities=15% Similarity=0.258 Sum_probs=73.3
Q ss_pred CCccccCCCceeeeeccc---ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchh
Q psy5595 40 RDLIGDSSGKRAIDVMNS---IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMET 116 (293)
Q Consensus 40 ~e~l~~~TGiraID~l~p---igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~ 116 (293)
.+.+ .||+..+|-++. +-+|.-+.|.|+||+|||+|+.+++.++.+ .+..|+|+-.-+..+.
T Consensus 361 ~~~i--sTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~-------------~G~~vlyis~E~s~~~ 425 (1706)
T 3cmw_A 361 VETI--STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------------EGKTCAFIDAEHALDP 425 (1706)
T ss_dssp CCEE--CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-------------TTCCEEEECTTSCCCH
T ss_pred Ccee--ccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------------hCCCeEEEEccCchHH
Confidence 3456 899999999987 779999999999999999999999998864 1335777766555444
Q ss_pred HHHHHHhhhhCCc-cccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHH
Q psy5595 117 ARFFKQDFEENGS-MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYA 180 (293)
Q Consensus 117 ~~~~~~~l~~~g~-~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a 180 (293)
.. .+. .|+ .++ ..+ ...+. .++ .+.+++.+..+ ++--+||+|+++-+.
T Consensus 426 ~~--a~~---lGvd~~~-L~i-~~~~~--~e~------~l~~l~~lv~~-~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 426 IY--ARK---LGVDIDN-LLC-SQPDT--GEQ------ALEICDALARS-GAVDVIVVDSVAALT 474 (1706)
T ss_dssp HH--HHH---TTCCGGG-CEE-ECCSS--HHH------HHHHHHHHHHH-TCCSEEEESCSTTCC
T ss_pred HH--HHH---cCCCHHH-eEE-cCCCC--HHH------HHHHHHHHHHh-cCCCEEEECCHHHhh
Confidence 31 122 232 223 222 22221 333 33455666655 566789999998654
No 48
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.08 E-value=0.0012 Score=60.24 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=25.2
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..++.++|.|++|+|||+|+..+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999998763
No 49
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.05 E-value=0.0021 Score=59.66 Aligned_cols=101 Identities=10% Similarity=0.111 Sum_probs=54.0
Q ss_pred CCceeeE--ecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEe
Q psy5595 60 RGQKIPI--FSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFL 137 (293)
Q Consensus 60 rGQr~~I--~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~ 137 (293)
.++.+.| .|++|+|||+|+..++++..... .....+..++|+-+.+.......+..-+..-+. . .
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~---~ 115 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA-------AKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGY---P---I 115 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHH-------HHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTC---C---C
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHH-------hccCCceeEEEEECCCCCCHHHHHHHHHHHhCC---C---C
Confidence 5667888 89999999999999998763200 000013456777765443222222221211110 0 0
Q ss_pred eCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHHH
Q psy5595 138 NLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYA 180 (293)
Q Consensus 138 stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~a 180 (293)
.....+. ....-.+.+++... ++.++|++||+-.+.
T Consensus 116 ~~~~~~~------~~~~~~l~~~l~~~-~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 116 QVRGAPA------LDILKALVDNLYVE-NHYLLVILDEFQSML 151 (412)
T ss_dssp CCTTCCH------HHHHHHHHHHHHHH-TCEEEEEEESTHHHH
T ss_pred CCCCCCH------HHHHHHHHHHHHhc-CCeEEEEEeCHHHHh
Confidence 0001111 11122334455555 789999999998765
No 50
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=97.03 E-value=0.0001 Score=74.06 Aligned_cols=61 Identities=38% Similarity=0.590 Sum_probs=42.0
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccc-----cCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~-----~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++-.||++-..-. +++|.+++||++.++++.++|||+|++. .+.||+|.++++++|+||-
T Consensus 326 VLl~~DsltR~A~A~rEis~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~~gdD~ 399 (588)
T 3mfy_A 326 VALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399 (588)
T ss_dssp EEEEEECTTTCCCCC----------------CCHHHHHHHHHHTTCEEEECSSSSCCEEEEEEEEECCCTTSCS
T ss_pred EEEeecchHHHHHHHHHHHHhccCCCccccCCchhhhhhhHHHhccccccccCCCCCCcceEEEEEEECCCCCC
Confidence 44445676643322 4888999999999999999999999986 5789999999999998874
No 51
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.97 E-value=0.0025 Score=61.71 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=37.8
Q ss_pred CCCceeeeecc-cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 46 SSGKRAIDVMN-SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 46 ~TGiraID~l~-pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.||+..+|-++ -+-+|+-+.|.|+||+|||+|+.+|+.++.
T Consensus 187 ~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 187 PTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp CCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999887 377999999999999999999999999875
No 52
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.94 E-value=0.0008 Score=61.43 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=24.4
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+..++|.|++|+|||+|+..|++...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 567899999999999999999999873
No 53
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=96.90 E-value=0.00024 Score=69.97 Aligned_cols=61 Identities=62% Similarity=1.001 Sum_probs=50.8
Q ss_pred EEecCCCccccc--------cccccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSA--------AREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi--------~~~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++-.. .-++.|.+++||++.++.+..+|||+|++..+.||+|.++++.+++||-
T Consensus 251 VLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~~l~~l~ERAg~~~~~~GSIT~i~~v~~~~dD~ 319 (469)
T 2c61_A 251 VLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDI 319 (469)
T ss_dssp EEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHHHHTSCEEBTTSSCEEEEEEEEECCSCTT
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCchhhhhhhhHHhhccccCCCCCceeeeeeeecCCCCc
Confidence 444456666442 2248899999999999999999999999988899999999999999983
No 54
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.88 E-value=0.0024 Score=61.61 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=37.8
Q ss_pred CCCceeeeeccc-ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 46 SSGKRAIDVMNS-IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 46 ~TGiraID~l~p-igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.||+..+|-++- +-+|+-+.|.|+||+|||+|+.+|+.++.
T Consensus 184 ~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 184 RTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 899999998874 77999999999999999999999999885
No 55
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.88 E-value=0.0018 Score=52.53 Aligned_cols=28 Identities=7% Similarity=0.141 Sum_probs=24.9
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.+..++|.|++|+|||+|+..++++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 5567899999999999999999998864
No 56
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.87 E-value=0.00054 Score=57.28 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=25.4
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|.++.+|+.++|+|++|+|||||+..|+..
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 567889999999999999999999999765
No 57
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.81 E-value=0.0077 Score=56.76 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=38.5
Q ss_pred CCCceeeeeccc-ccCCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 46 SSGKRAIDVMNS-IARGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 46 ~TGiraID~l~p-igrGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
.||+..+|-++- +-+|+=++|.|+||+|||+|+.+|+.++..
T Consensus 30 ~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 30 PTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp CCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 899999998874 889999999999999999999999998853
No 58
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.80 E-value=0.0041 Score=55.26 Aligned_cols=28 Identities=11% Similarity=0.254 Sum_probs=24.9
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..+..++|.|++|+|||+|+..|++..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4567799999999999999999998874
No 59
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.73 E-value=0.00095 Score=56.87 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=25.4
Q ss_pred CCCceeeeecccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 46 ~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++--..+.+.+..+|+.++|.|++|+|||||+..|+...+
T Consensus 14 ~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 14 GTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CchhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45556677778888999999999999999999999988765
No 60
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.73 E-value=0.00028 Score=69.40 Aligned_cols=61 Identities=61% Similarity=1.029 Sum_probs=51.4
Q ss_pred EEecCCCcccccc--------ccccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAA--------REEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~--------~~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++-..- -++.|.+++||.+.++.+..+|||+|++..+.||+|.+++|.+++||-
T Consensus 250 VLl~~DslTr~A~A~REisl~lge~P~~~GYp~~vf~~l~~l~ERAg~~~~~~GSIT~i~tv~~~~dD~ 318 (465)
T 3vr4_D 250 VLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGLKGSVTQIPILTMPEDDK 318 (465)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHHHHHHHHTSCEEETTCSCEEEEEEEEECGGGCT
T ss_pred EEEEEcChHHHHHHHHHHHhhcCCCCccccCCchHHHHhHHHHHhhhccCCCCCcEEEEEEEEecCCCc
Confidence 4444567775432 248999999999999999999999999988899999999999999983
No 61
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.73 E-value=0.0043 Score=60.57 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=37.7
Q ss_pred CC-Cceeeeeccc-ccCCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 46 SS-GKRAIDVMNS-IARGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 46 ~T-GiraID~l~p-igrGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
.| |+..+|-++- +-+|+=++|.|+||+|||+|+.+++.++.+
T Consensus 225 ~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 225 LFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp CCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred cccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 78 9999998874 668999999999999999999999998853
No 62
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=96.72 E-value=0.00036 Score=68.62 Aligned_cols=61 Identities=62% Similarity=1.066 Sum_probs=51.1
Q ss_pred EEecCCCcccccc--------ccccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSAA--------REEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi~--------~~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++-..- -++.|.+++||.+.++.+..+|||+|++..+.||+|.++++.+++||-
T Consensus 253 VLl~~DdlTr~A~A~REisl~lge~P~~~GYp~~~f~~l~~l~ERag~~~~~~GSIT~l~~v~~~~dD~ 321 (464)
T 3gqb_B 253 VLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSMPDDDR 321 (464)
T ss_dssp EEEEEETHHHHHHHHHHHHHTTTCCBCGGGSBTTHHHHHHHHHTSCBCBTTCSCEEEEEEEEEETTSCT
T ss_pred EEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHhhcccCCCCCcEEEEEEEEccCCCc
Confidence 4444567765422 248999999999999999999999999998899999999999999984
No 63
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.72 E-value=0.00035 Score=64.48 Aligned_cols=27 Identities=7% Similarity=0.270 Sum_probs=24.7
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++.+.|.|++|+|||+|+..|++.+.
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999999874
No 64
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.71 E-value=0.00073 Score=61.00 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=36.7
Q ss_pred CC-Cceeeeecc-cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 46 SS-GKRAIDVMN-SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 46 ~T-GiraID~l~-pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.| |+.++|-+. .+.+|+-++|.|++|+|||||+.+|+....
T Consensus 18 ~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 18 LFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 78 999998664 688999999999999999999999998874
No 65
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.70 E-value=0.0087 Score=53.08 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=23.7
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
....++|.|++|+|||+|+..|++..+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 456799999999999999999999864
No 66
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.54 E-value=0.0026 Score=60.01 Aligned_cols=40 Identities=0% Similarity=-0.055 Sum_probs=34.8
Q ss_pred CCCceeeeecc-cccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 46 SSGKRAIDVMN-SIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 46 ~TGiraID~l~-pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.||+.-+|-++ -+-+|.-++|.|+||+|||+|+.+++.+.
T Consensus 107 ~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~~ 147 (331)
T 2vhj_A 107 VGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEAL 147 (331)
T ss_dssp CSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHHH
T ss_pred ccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHhC
Confidence 69999999987 33477888999999999999999999873
No 67
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.54 E-value=0.00077 Score=57.02 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=23.3
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.++|.|++|+|||+|+..|++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998874
No 68
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.46 E-value=0.0096 Score=51.82 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=23.5
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
....++|.|++|+|||+|+..|++..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345689999999999999999999874
No 69
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.45 E-value=0.0017 Score=55.71 Aligned_cols=30 Identities=7% Similarity=0.160 Sum_probs=24.6
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.++.+|+.++|+|++|+|||||+..|+...
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 378999999999999999999999998765
No 70
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.45 E-value=0.0018 Score=54.46 Aligned_cols=28 Identities=7% Similarity=0.209 Sum_probs=24.8
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+|+.++|+||+|+|||||+..|+...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4579999999999999999999998764
No 71
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.43 E-value=0.0047 Score=55.39 Aligned_cols=28 Identities=7% Similarity=0.097 Sum_probs=24.3
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..+..++|.|++|+|||+|+..+++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999998874
No 72
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.42 E-value=0.011 Score=50.16 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=29.0
Q ss_pred eeeecccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 51 AIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 51 aID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+..+.--.+++.++|.|++|+|||+|+..+++...
T Consensus 42 ~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 42 ALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp HHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 334444444789999999999999999999999875
No 73
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.42 E-value=0.0025 Score=61.58 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=23.6
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+..++|.|++|+|||||+..|++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998873
No 74
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.41 E-value=0.0095 Score=57.88 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=25.5
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+--++...++|.|++|+|||+|+..|++...
T Consensus 45 i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 45 IEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3334445799999999999999999999874
No 75
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.36 E-value=0.0019 Score=56.30 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=24.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+||+|+|||||+..|+...
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 567799999999999999999999998754
No 76
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.31 E-value=0.013 Score=52.24 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=24.2
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+..++|.|++|+|||+|+..|++..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998874
No 77
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.22 E-value=0.0027 Score=53.21 Aligned_cols=30 Identities=3% Similarity=0.025 Sum_probs=27.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|+.|+|||||+..|+...
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 467899999999999999999999998875
No 78
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.18 E-value=0.0032 Score=53.48 Aligned_cols=31 Identities=10% Similarity=0.106 Sum_probs=25.9
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
.+.+|.++.|.|++|+|||||+..++...+.
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4678999999999999999999999988754
No 79
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.18 E-value=0.0031 Score=52.99 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=24.8
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.+.+|..++|.|++|+|||||+..|+...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999998764
No 80
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.17 E-value=0.0029 Score=54.21 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=25.7
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
..+|+.++|+|++|+|||||+..|+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999998875
No 81
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.15 E-value=0.0026 Score=56.45 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=27.8
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33678999999999999999999999887543
No 82
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.02 Score=53.48 Aligned_cols=98 Identities=4% Similarity=-0.038 Sum_probs=60.0
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCcc---chhHHHHHHhhhhCCccccEE
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVN---METARFFKQDFEENGSMENVC 134 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer---~e~~~~~~~~l~~~g~~~~tv 134 (293)
-+++..+.|.|+||+|||+++..++++.....- +.......+|++-|=.- ......+.+.+.... .
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~------~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~---~-- 110 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSA------RKELPIFDYIHIDALELAGMDALYEKIWFAISKEN---L-- 110 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTT------TTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC------
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhh------hccCCceEEEEEeccccCCHHHHHHHHHHHhcCCC---C--
Confidence 478999999999999999999999998753110 00011345666654332 245566777764321 0
Q ss_pred EEeeCCCCchhhhhchHHHHHHHHHHHHH---hcCCceEEEecchhHHH
Q psy5595 135 LFLNLANDPTIERIITPRLALTTAEFLAY---QCEKHVLVILTDMSSYA 180 (293)
Q Consensus 135 vv~stsd~~~~~r~~a~~~a~tiAEyfr~---~~G~~VLli~Dsltr~a 180 (293)
+... + .-.+-++|.. ..++.+++++|++-++.
T Consensus 111 ----~~~~-~---------~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 111 ----CGDI-S---------LEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp -----CCC-C---------HHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred ----CchH-H---------HHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 1111 1 1233455653 23678999999998876
No 83
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.09 E-value=0.0028 Score=55.80 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=27.0
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3357889999999999999999999988754
No 84
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.06 E-value=0.003 Score=56.08 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=27.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 578899999999999999999999987654
No 85
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.05 E-value=0.0028 Score=58.96 Aligned_cols=33 Identities=3% Similarity=0.063 Sum_probs=29.5
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.-+.|.+|++++|+|++|+|||||+..|++-.
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345788999999999999999999999998865
No 86
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.02 E-value=0.021 Score=56.34 Aligned_cols=42 Identities=19% Similarity=-0.004 Sum_probs=30.3
Q ss_pred CceeeEecCCCCChhHHHHHHHH---HhcccccCCccccCCCCCceEEEEEecCccc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICR---QAGLVKMPGKSVLDDSEDNFAIVFAAMGVNM 114 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~---~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~ 114 (293)
..-++|.|..|+|||+|+.++++ ..-+ .+-+.++++.+.+..
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~------------~~F~~~~wv~vs~~~ 196 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIG------------INYDSIVWLKDSGTA 196 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBT------------TTBSEEEEEECCCCS
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHh------------ccCCcEEEEEECCCC
Confidence 35689999999999999999997 2211 123567777777653
No 87
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.97 E-value=0.0035 Score=56.55 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=26.7
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999999988754
No 88
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.97 E-value=0.0042 Score=56.18 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=27.1
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999998864
No 89
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.97 E-value=0.0033 Score=56.25 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=27.8
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33578899999999999999999999987654
No 90
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.96 E-value=0.0061 Score=59.20 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=38.5
Q ss_pred CCCceeeeeccc-ccCCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 46 SSGKRAIDVMNS-IARGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 46 ~TGiraID~l~p-igrGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
.||+..+|-++- +-+|+-+.|.|+||+|||+|+.+|+.++.+
T Consensus 181 ~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 181 PSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp CCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 899999998875 779999999999999999999999999864
No 91
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.95 E-value=0.0047 Score=51.76 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=23.8
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+|+.++|+||+|+|||||+..|+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68899999999999999999998864
No 92
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.95 E-value=0.0035 Score=56.79 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 678899999999999999999999987643
No 93
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.94 E-value=0.0041 Score=55.58 Aligned_cols=30 Identities=7% Similarity=0.211 Sum_probs=27.1
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 367889999999999999999999999863
No 94
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.94 E-value=0.0038 Score=53.42 Aligned_cols=27 Identities=7% Similarity=0.201 Sum_probs=22.3
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
-+|+.++|+||+|+|||||+..|....
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999998754
No 95
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.93 E-value=0.014 Score=53.49 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=23.2
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
...++|.||+|+|||+|+..|++..+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 35699999999999999999999874
No 96
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.93 E-value=0.0038 Score=52.08 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=23.1
Q ss_pred ccccCCceeeEecCCCCChhHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQ 80 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~ 80 (293)
+.+.+|+.++|+|++|+|||||+..
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 4678999999999999999999995
No 97
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.93 E-value=0.0043 Score=51.13 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=25.4
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
-+|..++|+|++|+|||||+..++...+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 46889999999999999999999887653
No 98
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.92 E-value=0.0036 Score=57.16 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=27.3
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3578999999999999999999999987643
No 99
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.91 E-value=0.0037 Score=56.14 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=27.2
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999987543
No 100
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.91 E-value=0.0037 Score=55.12 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=27.3
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567899999999999999999999987654
No 101
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.90 E-value=0.0039 Score=56.20 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=27.2
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999999987543
No 102
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.90 E-value=0.004 Score=56.46 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=27.7
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34678899999999999999999999987543
No 103
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.89 E-value=0.0038 Score=55.52 Aligned_cols=31 Identities=13% Similarity=0.003 Sum_probs=27.3
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999999999988643
No 104
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.89 E-value=0.0036 Score=55.02 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=26.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56889999999999999999999998754
No 105
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.87 E-value=0.0038 Score=55.43 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=26.3
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999998754
No 106
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.86 E-value=0.027 Score=52.90 Aligned_cols=27 Identities=11% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+..++|.|++|+|||+|+..|++..+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 357899999999999999999988863
No 107
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.85 E-value=0.022 Score=53.08 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.9
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
....++|.|++|+|||+|+..|++..+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 456799999999999999999998864
No 108
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.85 E-value=0.0042 Score=56.37 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=27.4
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999999987643
No 109
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.84 E-value=0.0042 Score=55.93 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=26.8
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 568899999999999999999999987643
No 110
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.84 E-value=0.0093 Score=54.82 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=24.0
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
..+..++|.|++|+|||+|+..++++.
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 446679999999999999999999876
No 111
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.83 E-value=0.0041 Score=56.78 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=27.7
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578899999999999999999999987643
No 112
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.82 E-value=0.0048 Score=58.67 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=28.4
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|.=+.+.+|+..+|+||+|+|||||+..|+.-
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 44467899999999999999999999999874
No 113
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.82 E-value=0.0043 Score=55.75 Aligned_cols=32 Identities=9% Similarity=0.277 Sum_probs=27.6
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578899999999999999999999987543
No 114
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.80 E-value=0.0045 Score=55.88 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=26.9
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 367899999999999999999999998754
No 115
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.80 E-value=0.0034 Score=54.47 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=20.6
Q ss_pred CCceeeeecccccCCceeeEecCCCCChhHHHHHHH-HHh
Q psy5595 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIC-RQA 85 (293)
Q Consensus 47 TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~-~~~ 85 (293)
|...-+++ .+.+|+.++|+||+|+|||||+..|+ ...
T Consensus 15 ~~~~~~sl--~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSM--LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------C--CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCc--ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 33444443 46789999999999999999999998 653
No 116
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.79 E-value=0.005 Score=54.16 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=26.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.+.+|..++|.||+|+|||||+..|+...+
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5788999999999999999999999988654
No 117
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.77 E-value=0.0044 Score=55.64 Aligned_cols=30 Identities=7% Similarity=0.205 Sum_probs=26.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999999987643
No 118
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.77 E-value=0.0066 Score=50.93 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=26.6
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHH-hc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQ-AG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~-~~ 86 (293)
+..+|.+++|.|++|+||||++..++.. .+
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4567899999999999999999999987 44
No 119
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.76 E-value=0.013 Score=52.69 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.4
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
...++|.|++|+|||+|+..|+++.+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999998764
No 120
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.71 E-value=0.0067 Score=49.65 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=24.1
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.|..++|.|++|+|||||+..|+...+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998764
No 121
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.71 E-value=0.0056 Score=51.97 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=24.7
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..+|..++|.|++|+|||||+..|+....
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999999999988653
No 122
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.71 E-value=0.0021 Score=63.78 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=49.7
Q ss_pred EEEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 229 ILTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
=|++--||++-..-. +++|.+++||.+.++.++.+|||+|+ .+.||+|.+++|.+|+||-
T Consensus 267 dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~~~l~~L~ERag~--~~~GSIT~i~tV~v~~dD~ 334 (498)
T 1fx0_B 267 DVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITS--TKEGSITSIQAVYVPADDL 334 (498)
T ss_dssp EEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHTSSSSSC--CTTCEECCEEEEECGGGCS
T ss_pred cEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHhccC--CCCCceeeeEEEEccCCCc
Confidence 455556777755322 48999999999999999999999996 5689999999999999884
No 123
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.69 E-value=0.086 Score=48.91 Aligned_cols=31 Identities=10% Similarity=0.004 Sum_probs=27.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.+.+|+.++|.|++|+||||++..|+....
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999999998764
No 124
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.69 E-value=0.016 Score=51.33 Aligned_cols=127 Identities=7% Similarity=0.103 Sum_probs=67.6
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEee
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLN 138 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~s 138 (293)
.+|+-++|.|++|+||||++.++++++... .....++-...+.| .+. .+ ...-|+-....-+ .
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~-----------g~kVli~~~~~d~r-~~~-~i---~srlG~~~~~~~~-~ 72 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA-----------DVKYLVFKPKIDTR-SIR-NI---QSRTGTSLPSVEV-E 72 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT-----------TCCEEEEEECCCGG-GCS-SC---CCCCCCSSCCEEE-S
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc-----------CCEEEEEEeccCch-HHH-HH---HHhcCCCcccccc-C
Confidence 468888899999999999999888877421 11223332355554 211 11 1111211111111 0
Q ss_pred CCCCchhhhhchHHHHHHHHHHHHHh--cCCceEEEecchhHH----HHHHHHHhhhcCCCC----C-CCCCCCchhhhH
Q psy5595 139 LANDPTIERIITPRLALTTAEFLAYQ--CEKHVLVILTDMSSY----AEALREVSAAREEVP----G-RRGFPGYMYTNL 207 (293)
Q Consensus 139 tsd~~~~~r~~a~~~a~tiAEyfr~~--~G~~VLli~Dsltr~----a~A~reisl~~ge~p----~-~~gyp~~lf~~l 207 (293)
.. ..+-+++++. .++..+|++|++-.+ .+..+.+... ..| | +..|.+..|...
T Consensus 73 -----------~~---~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~--gi~Vil~Gl~~df~~~~F~~~ 136 (223)
T 2b8t_A 73 -----------SA---PEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAEN--GFVVIISGLDKNFKGEPFGPI 136 (223)
T ss_dssp -----------ST---HHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHT--TCEEEEECCSBCTTSSBCTTH
T ss_pred -----------CH---HHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhC--CCeEEEEeccccccCCcCCCc
Confidence 01 1223333321 134568899998654 2234444332 222 1 236788888888
Q ss_pred HHHhhhhcccC
Q psy5595 208 ATIYERAGRVE 218 (293)
Q Consensus 208 a~l~ERag~~~ 218 (293)
+.|++.|-.+.
T Consensus 137 ~~Ll~lAD~V~ 147 (223)
T 2b8t_A 137 AKLFTYADKIT 147 (223)
T ss_dssp HHHHHHCSEEE
T ss_pred HHHHHHhheEe
Confidence 89999887654
No 125
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.68 E-value=0.0049 Score=60.72 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=32.9
Q ss_pred CCCceeeeecc--cccCCceeeEecCCCCChhHHHHHHH
Q psy5595 46 SSGKRAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQIC 82 (293)
Q Consensus 46 ~TGiraID~l~--pigrGQr~~I~g~~G~GKT~L~~~I~ 82 (293)
.||+.++|-+. .+.+|+..+|+|++|+|||||+.+++
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 78999998654 68899999999999999999999963
No 126
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.67 E-value=0.0063 Score=58.34 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=28.1
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.+.+|+..+|+||+|+|||||+..|+.-.
T Consensus 22 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34678999999999999999999999998643
No 127
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.65 E-value=0.0064 Score=57.74 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=28.2
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|.=+.+.+|+.++|+||+|+|||||+..|+.-
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 44467889999999999999999999999864
No 128
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.65 E-value=0.006 Score=53.49 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=23.8
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.+| ++|+|++|+|||+|+..|+....
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 34556 99999999999999999998763
No 129
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.65 E-value=0.0061 Score=57.85 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=28.0
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|.=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34467889999999999999999999999864
No 130
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.65 E-value=0.0065 Score=57.95 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=28.1
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|.=+.+.+|+.++|+||+|+|||||+..|+.-
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 34467889999999999999999999999864
No 131
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.02 Score=55.40 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=23.0
Q ss_pred eeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
-++++||||||||.|+..||+.++.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 4899999999999999999999863
No 132
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.64 E-value=0.0066 Score=57.71 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=28.0
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|.=+.+.+|+.++|+||+|+|||||+..|+.-
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 34467889999999999999999999999864
No 133
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.63 E-value=0.0058 Score=51.91 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=27.2
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
...+.+|..++|.|++|+|||||+..|+...
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4457889999999999999999999998754
No 134
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.62 E-value=0.0047 Score=53.92 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=24.8
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+|+.++|+|++|+|||||+..|+..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999999988865
No 135
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.60 E-value=0.0064 Score=54.96 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=24.2
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.+| ++|+||+|+|||+|+..|+...+
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence 34566 99999999999999999998764
No 136
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.018 Score=55.93 Aligned_cols=23 Identities=4% Similarity=0.268 Sum_probs=22.1
Q ss_pred eeEecCCCCChhHHHHHHHHHhc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+++.||||||||.|+..||+..+
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999985
No 137
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.56 E-value=0.0068 Score=57.77 Aligned_cols=32 Identities=9% Similarity=0.179 Sum_probs=28.1
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|.=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 44467889999999999999999999999864
No 138
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.55 E-value=0.0075 Score=51.83 Aligned_cols=25 Identities=4% Similarity=0.149 Sum_probs=23.2
Q ss_pred CceeeEecCCCCChhHHHHHHHHHh
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++++|+|++|+|||||+..|+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 7899999999999999999998865
No 139
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.023 Score=55.42 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=23.5
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
--++++||||||||.|+..||+..+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45999999999999999999999863
No 140
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=95.54 E-value=0.027 Score=51.16 Aligned_cols=59 Identities=8% Similarity=-0.077 Sum_probs=49.1
Q ss_pred CCCceeeeeccc--ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhH
Q psy5595 46 SSGKRAIDVMNS--IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETA 117 (293)
Q Consensus 46 ~TGiraID~l~p--igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~ 117 (293)
.|||.-+|-++- +-+|.-.+|.|+||+|||+|+.+++.+..+ .+..|+|+...|..+..
T Consensus 4 ~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~-------------~Ge~~~~~~~~e~~~~l 64 (260)
T 3bs4_A 4 SWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLK-------------SDNLVGMFSISYPLQLI 64 (260)
T ss_dssp CCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHH-------------TTCEEEEEECSSCHHHH
T ss_pred ccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHH-------------CCCcEEEEEEeCCHHHH
Confidence 699999999875 458999999999999999999999887653 25689999999887654
No 141
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.51 E-value=0.0036 Score=52.60 Aligned_cols=28 Identities=4% Similarity=0.045 Sum_probs=25.7
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
+++.+|.+++|+|++|+|||||+..++.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999999987764
No 142
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.50 E-value=0.0074 Score=57.90 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=27.1
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=+.+.+|+.++|+||+|+|||||+..|+.-
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 357899999999999999999999999863
No 143
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.018 Score=56.13 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=23.4
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
-.++++||||||||.|+..||++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 35999999999999999999999863
No 144
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.45 E-value=0.0061 Score=54.96 Aligned_cols=34 Identities=9% Similarity=-0.006 Sum_probs=28.7
Q ss_pred eeeecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 51 AIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 51 aID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+++-+. +.+|+.++|.||+|+|||||+..|+...
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 344444 8899999999999999999999988754
No 145
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.44 E-value=0.0071 Score=55.59 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=27.5
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3578899999999999999999999987654
No 146
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.43 E-value=0.0056 Score=57.89 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=28.0
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|.=+.+.+|+.++|+||+|+|||||+..|+.-
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 34467899999999999999999999999864
No 147
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.39 E-value=0.01 Score=50.49 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=25.6
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+++|.-+.|.|++|+|||||+..++...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5789999999999999999999998865
No 148
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.39 E-value=0.0082 Score=48.72 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=24.8
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..+..++|.|++|+|||+|+..+++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 5577899999999999999999998864
No 149
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.37 E-value=0.0092 Score=56.90 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=29.6
Q ss_pred eee-eecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 50 RAI-DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 50 raI-D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.++ |.=+.+.+|+..+|+|++|+|||||+..|+.-
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 344 34478999999999999999999999988764
No 150
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.35 E-value=0.008 Score=54.42 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=25.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+. |+.++|+|++|+|||||+..|+..
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 4677 999999999999999999998764
No 151
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.35 E-value=0.045 Score=53.63 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.3
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+..+-++|.|++|+|||+|+.+++++
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 34567899999999999999998764
No 152
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.33 E-value=0.049 Score=47.60 Aligned_cols=107 Identities=12% Similarity=0.025 Sum_probs=53.7
Q ss_pred eeeecccccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEec-C-ccchhHHHHHHhhh---
Q psy5595 51 AIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAM-G-VNMETARFFKQDFE--- 125 (293)
Q Consensus 51 aID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~i-G-er~e~~~~~~~~l~--- 125 (293)
..+...+.-+ .++.|++++|.||||++..++..+.. | +.. ++|+=.+ | ....|...+. .|.
T Consensus 19 ~~~~~~~~~~-g~i~v~tG~GkGKTTaA~GlalRA~g----------~-G~r-V~~vQF~Kg~~~~gE~~~l~-~L~v~~ 84 (196)
T 1g5t_A 19 ARVAQAQEER-GIIIVFTGNGKGKTTAAFGTAARAVG----------H-GKN-VGVVQFIKGTWPNGERNLLE-PHGVEF 84 (196)
T ss_dssp --------CC-CCEEEEESSSSCHHHHHHHHHHHHHH----------T-TCC-EEEEESSCCSSCCHHHHHHG-GGTCEE
T ss_pred hhhhhccccC-ceEEEECCCCCCHHHHHHHHHHHHHH----------C-CCe-EEEEEeeCCCCCccHHHHHH-hCCcEE
Confidence 3444555545 47899999999999999988777642 1 111 3333222 3 2233333332 231
Q ss_pred -hCCccccEEEEeeCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhH
Q psy5595 126 -ENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS 178 (293)
Q Consensus 126 -~~g~~~~tvvv~stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr 178 (293)
..| .. |.- ...........+..++..+...... ++.-|||+|+++.
T Consensus 85 ~~~g---~g--f~~-~~~~~~~~~~~a~~~l~~a~~~l~~-~~yDlvILDEi~~ 131 (196)
T 1g5t_A 85 QVMA---TG--FTW-ETQNREADTAACMAVWQHGKRMLAD-PLLDMVVLDELTY 131 (196)
T ss_dssp EECC---TT--CCC-CGGGHHHHHHHHHHHHHHHHHHTTC-TTCSEEEEETHHH
T ss_pred EEcc---cc--ccc-CCCCcHHHHHHHHHHHHHHHHHHhc-CCCCEEEEeCCCc
Confidence 111 10 111 1111123445566666666554444 7788999999976
No 153
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.31 E-value=0.01 Score=50.36 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=25.0
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.+|+.+.|.|++|+|||||+..|+...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999998876
No 154
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.31 E-value=0.009 Score=53.34 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=23.8
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.+| ++|+|++|+|||+|+..|+....
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 34456 99999999999999999998763
No 155
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.31 E-value=0.012 Score=51.34 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=25.4
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.|.-+|.-+.|.||+|+|||||+..|+...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 355689999999999999999999998764
No 156
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.28 E-value=0.01 Score=50.36 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.2
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+++|+|++|+|||||+..|+....
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998763
No 157
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.27 E-value=0.005 Score=57.17 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=27.8
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.|.+|+.++|+|++|+|||||+..|++-.
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3678999999999999999999999998754
No 158
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.26 E-value=0.05 Score=49.31 Aligned_cols=29 Identities=10% Similarity=0.269 Sum_probs=25.5
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+..+..++|.|++|+|||+|+..|++..+
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34677899999999999999999999874
No 159
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.26 E-value=0.0096 Score=49.27 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=24.4
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+|..+.|.|++|+||||++..++...+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 678999999999999999999998664
No 160
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.23 E-value=0.012 Score=51.56 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=24.4
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++..++|+|++|+|||||+..|+..-+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999997764
No 161
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.23 E-value=0.012 Score=50.51 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=24.4
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.+|.-++|.||+|+|||||+..++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 478999999999999999999998765
No 162
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.21 E-value=0.055 Score=49.77 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=23.0
Q ss_pred CceeeEecCCCCChhHHHHHHHHHh
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
...++|.||+|+|||+|+..+++..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4679999999999999999999987
No 163
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.20 E-value=0.069 Score=52.96 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=27.8
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.+.+|+.++|+|++|+|||||+..|+....
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 4688999999999999999999999988653
No 164
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.20 E-value=0.012 Score=51.65 Aligned_cols=28 Identities=11% Similarity=0.255 Sum_probs=24.0
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+-+|+.++|+||+|+|||||+..|+...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4579999999999999999999988764
No 165
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.19 E-value=0.011 Score=49.76 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=22.0
Q ss_pred CceeeEecCCCCChhHHHHHHHHHh
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|+-++|.||+|+|||||+..|+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999998764
No 166
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.19 E-value=0.0057 Score=57.83 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=27.4
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.=+.+.+|+.++|+||+|+|||||+..|+.-
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457889999999999999999999999864
No 167
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.17 E-value=0.012 Score=54.57 Aligned_cols=30 Identities=7% Similarity=-0.062 Sum_probs=26.8
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.+|+.++|.|++|+|||||+..|+....
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 378999999999999999999999987653
No 168
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.16 E-value=0.076 Score=49.50 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=23.2
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
...++|.||+|+|||+|+..|++..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 34599999999999999999999874
No 169
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.15 E-value=0.052 Score=49.27 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.8
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..++|.|++|+|||+|+..|++..+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998874
No 170
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.15 E-value=0.0094 Score=49.75 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.6
Q ss_pred CceeeEecCCCCChhHHHHHHHHH
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|+.++|+|++|+|||||+..|+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 677899999999999999999864
No 171
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.032 Score=54.49 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=23.0
Q ss_pred eeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
-++++||||||||.|+..||+..+.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred CCceECCCCchHHHHHHHHHHHhCC
Confidence 4999999999999999999999863
No 172
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.03 E-value=0.016 Score=48.01 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=25.8
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
-++..+.|.|++|+||||++..++...+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 46789999999999999999999988754
No 173
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.03 E-value=0.015 Score=49.64 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=23.7
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++.+++|.|++|+||||++..|+..-+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999988653
No 174
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.01 E-value=0.0054 Score=60.59 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=48.3
Q ss_pred EEecCCCccccc--------cccccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 230 LTMPNDDFKVSA--------AREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 230 v~~~~~d~~dpi--------~~~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
|++--||++-.. .-+++|.+++||.+.++.++.+|||++. .+.||+|.++++.+++||-
T Consensus 255 VLll~DsitR~A~A~rEis~~lge~P~~~GYpp~l~~~l~~l~ERag~--~~~GSIT~i~tv~v~~dD~ 321 (482)
T 2ck3_D 255 VLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT--TKKGSITSVQAIYVPADDL 321 (482)
T ss_dssp EEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHHHHHHHHTTSSC--CSSCCEEEEEEEECGGGCT
T ss_pred EEEEeccHHHHHHHHHHhhhhcCCCCccccCchhHHHHhHHHHHhhcC--CCCCceeeeEEEEecCCCC
Confidence 444456776543 2258999999999999999999999995 4689999999999999884
No 175
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.96 E-value=0.11 Score=50.68 Aligned_cols=28 Identities=11% Similarity=0.142 Sum_probs=24.8
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+++..+++.|++|+||||++..+++...
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999998764
No 176
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.95 E-value=0.015 Score=51.74 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=26.9
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.+.+ +.++|+|++|+|||||+..|+.-.
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 33456889 999999999999999999998643
No 177
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.94 E-value=0.017 Score=47.56 Aligned_cols=27 Identities=4% Similarity=0.087 Sum_probs=23.5
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+|..+.|.|++|+||||++..++...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999998764
No 178
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.94 E-value=0.017 Score=57.48 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=29.6
Q ss_pred eeeecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 51 AIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 51 aID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+++.+..+.+|++++|+|++|+|||||+..|+...
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45555468999999999999999999999998643
No 179
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.89 E-value=0.018 Score=47.12 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=23.3
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
=|.++|.|++|+||||++..++...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 38999999999999999999998765
No 180
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.89 E-value=0.003 Score=54.55 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=26.6
Q ss_pred eeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCcc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVN 113 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer 113 (293)
++|.|++|+|||+++.+++.+ +. -++|++-++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~----------------~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-AP----------------QVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CS----------------SEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CC----------------CeEEEecCCC
Confidence 689999999999999998755 31 2688888774
No 181
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.88 E-value=0.0065 Score=59.90 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=41.3
Q ss_pred cccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCCC
Q psy5595 244 EEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDVG 290 (293)
Q Consensus 244 ~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~~ 290 (293)
+++|.+++||.+.++.++..|||++. .+.||+|.++++.+++||-
T Consensus 269 ge~P~~~GYp~~~~~~l~~l~ERa~~--~~~GSIT~i~tv~~~~dD~ 313 (473)
T 1sky_E 269 GRMPSAIGYQPTLATEMGQLQERITS--TAKGSITSIQAIYVPADDY 313 (473)
T ss_dssp TCCCCGGGCCTTHHHHHHHHHTTSSC--BSSCEEEEEEECCCSTTCS
T ss_pred CCCCccccCCchhhhHHHHHHHHhcC--CCCCceEEEEEEEecCCCC
Confidence 48999999999999999999999996 4679999999999999984
No 182
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.87 E-value=0.012 Score=55.09 Aligned_cols=29 Identities=3% Similarity=0.115 Sum_probs=26.0
Q ss_pred ccC--CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IAR--GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igr--GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.+ |++.+|+|++|+|||||+..|+....
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 456 99999999999999999999998764
No 183
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.047 Score=53.70 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=24.0
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
---+++.||||||||.|+..||+.++.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 446999999999999999999999863
No 184
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.81 E-value=0.2 Score=46.60 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=26.6
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.-.+|+.++|+|++|+|||||+..|+....
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999999998764
No 185
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.79 E-value=0.0057 Score=56.90 Aligned_cols=33 Identities=6% Similarity=0.108 Sum_probs=29.0
Q ss_pred eeecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 52 IDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 52 ID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+|.|+++-+|+..+|+|++|+|||||+..|+..
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence 577888999999999999999999999988643
No 186
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.79 E-value=0.019 Score=52.96 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=27.6
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.+.+|+.++|+|++|+|||||+..|+....
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999998753
No 187
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.78 E-value=0.015 Score=54.16 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=27.3
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
-+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3568999999999999999999999998653
No 188
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.014 Score=57.07 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=27.8
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.+.+|++++|+|++|+|||||+..|+.-.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 33567799999999999999999999998754
No 189
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.76 E-value=0.05 Score=50.12 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=23.3
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.++|.||+|+|||||+..|++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 7799999999999999999999874
No 190
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.75 E-value=0.021 Score=46.82 Aligned_cols=26 Identities=8% Similarity=-0.031 Sum_probs=23.2
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
|..+.|.|++|+||||++..++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56789999999999999999998764
No 191
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.75 E-value=0.016 Score=46.89 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=23.8
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
..+..++|.|++|+|||+|+..|.+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 356789999999999999999998865
No 192
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.74 E-value=0.017 Score=52.94 Aligned_cols=29 Identities=10% Similarity=-0.036 Sum_probs=25.8
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+..+|..++|.|++|+|||||+..|+...
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999999998865
No 193
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.74 E-value=0.021 Score=48.11 Aligned_cols=29 Identities=7% Similarity=-0.040 Sum_probs=25.5
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..+|..+.|.|++|+||||++..++...+
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999998754
No 194
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.73 E-value=0.016 Score=52.57 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.3
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-++|.||||+|||+|+..|++..+
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 366779999999999999999985
No 195
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.71 E-value=0.023 Score=55.91 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=35.5
Q ss_pred CCCceeeeecc--cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 46 SSGKRAIDVMN--SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 46 ~TGiraID~l~--pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.||+.-+|-++ .+-+|+.++|.|++|+|||||+.+++....
T Consensus 264 ~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 264 SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp CCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 68887777654 788999999999999999999999988764
No 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.70 E-value=0.042 Score=59.39 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.2
Q ss_pred CceeeEecCCCCChhHHHHHHHHH
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
..-++|.|++|+|||+|+.++++.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHh
Confidence 457899999999999999999864
No 197
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.70 E-value=0.021 Score=50.68 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=25.2
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+|..++|.|++|+|||||+..|+..-+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999999997654
No 198
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.66 E-value=0.021 Score=47.25 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=22.8
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+...++|.|++|+|||+|+..+++..
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44459999999999999999999876
No 199
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.66 E-value=0.25 Score=47.93 Aligned_cols=28 Identities=11% Similarity=-0.007 Sum_probs=24.8
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++..+++.|++|+||||++..++....
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688899999999999999999998764
No 200
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.66 E-value=0.22 Score=47.52 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=23.3
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
+..-+.|.|++|+||||++..++...+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~ 284 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGY 284 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4566888999999999999999876643
No 201
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.65 E-value=0.0083 Score=59.60 Aligned_cols=60 Identities=33% Similarity=0.588 Sum_probs=49.0
Q ss_pred EEecCCCccccccc--------cccCCCCCCCCcccccccchhhhccccc-------------cCCccccccceeecCCC
Q psy5595 230 LTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVE-------------GRNGSITQIPILTMPND 288 (293)
Q Consensus 230 v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~-------------~~~Gs~~~~~~~~~~~~ 288 (293)
|++--||++-..-. ++.|.+++||...+..+...+||+|++. .+.||+|.++++.+++|
T Consensus 256 VLli~Dsltr~A~A~REisl~lgepP~r~gYP~~vf~~~srLlERAg~~~~~~~~~~~~~~~~g~~GSITal~~V~~~~d 335 (513)
T 3oaa_A 256 ALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAG 335 (513)
T ss_dssp EEEEEETHHHHHHHHHHHHHHTTCCBCTTSCBTTHHHHHHHHHTTCSEECHHHHHHHHTTSCCSCCEEEEECCEEECGGG
T ss_pred EEEEecChHHHHHHHHHHHHhcCCCCcccCCCchhhhhcchHHHHHhhcccccchhccccccCCCCcceEEEEEEEcCCC
Confidence 45556777754322 4889999999988888888999999974 46899999999999999
Q ss_pred C
Q psy5595 289 V 289 (293)
Q Consensus 289 ~ 289 (293)
|
T Consensus 336 D 336 (513)
T 3oaa_A 336 D 336 (513)
T ss_dssp C
T ss_pred C
Confidence 8
No 202
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.63 E-value=0.012 Score=53.96 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=30.2
Q ss_pred eeecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 52 IDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 52 ID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
||-|+.+-+|+..+|+|++|+|||||+..|+ ..
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 6788889999999999999999999999998 54
No 203
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.62 E-value=0.022 Score=47.10 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=24.2
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
+.++.|.|++|+||||++..++...+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999999988754
No 204
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.57 E-value=0.021 Score=46.20 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=21.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.|.|++|+||||++..++...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998865
No 205
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.56 E-value=0.02 Score=56.85 Aligned_cols=61 Identities=26% Similarity=0.472 Sum_probs=49.4
Q ss_pred EEEecCCCccccccc--------cccCCCCCCCCcccccccchhhhcccccc--CCccccccceeecCCCC
Q psy5595 229 ILTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDV 289 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~--~~Gs~~~~~~~~~~~~~ 289 (293)
=|++--||++-..-. ++.|.+++||...+......+||+|++.. ..||+|.++++.+++||
T Consensus 256 dVLli~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~~srLlERAg~~~~~~~~GSITal~~v~~~~~D 326 (507)
T 1fx0_A 256 HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGD 326 (507)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTTGGGCCBBCTTTTSCEEEECCEEECSTTC
T ss_pred cEEEEEecHHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHHHHhhhhccccCCCcceeeeeeeeccCCC
Confidence 344456777654332 48899999999998889999999999874 36999999999999998
No 206
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.52 E-value=0.022 Score=48.41 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=25.7
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+..+|..++|.|++|+|||||+..|+...
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999998754
No 207
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.024 Score=57.35 Aligned_cols=35 Identities=9% Similarity=0.202 Sum_probs=29.7
Q ss_pred eeeecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 51 AIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 51 aID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.++.+..+.+|+..+|+|++|+|||||+..|+...
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45555568999999999999999999999988643
No 208
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.48 E-value=0.015 Score=52.34 Aligned_cols=55 Identities=4% Similarity=-0.059 Sum_probs=34.5
Q ss_pred cccCCCccccCCCCccccCCCceeeeecccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 28 FVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 28 ~~~~~p~~r~~p~e~l~~~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
||..+|.+...|..+++-..-+..+.. +.. +-+.|.|++|+|||+|+.+++++..
T Consensus 1 ~~~f~~~~~~~~~~~~gR~~el~~L~~---l~~-~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 1 GMLFDTSPKDNRKDFFDREKEIEKLKG---LRA-PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp CCTTCSSCCCSGGGSCCCHHHHHHHHH---TCS-SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHhcChHHHHHHHHH---hcC-CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 455666666655554421111111111 122 5899999999999999999998863
No 209
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.47 E-value=0.023 Score=52.50 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=25.4
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++|+.++|+|++|+|||||+..|+....
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4799999999999999999999998764
No 210
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.46 E-value=0.2 Score=46.22 Aligned_cols=30 Identities=7% Similarity=0.011 Sum_probs=26.6
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
...+|+.++|+|++|+||||++..|+....
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 357889999999999999999999998764
No 211
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.45 E-value=0.024 Score=47.40 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=24.3
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+|..+.|.|++|+||||++..++...+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998764
No 212
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.44 E-value=0.027 Score=59.20 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.7
Q ss_pred ceeeEecCCCCChhHHHHHHHHHh
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
..++|.|+.|+|||+|+.+++++.
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~ 171 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDH 171 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCH
T ss_pred CEEEEEeCCCCCHHHHHHHHhcCh
Confidence 457899999999999999888763
No 213
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.42 E-value=0.027 Score=47.44 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=25.1
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.-+|-.+.|.|++|+||||++..++...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999998754
No 214
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.41 E-value=0.024 Score=52.05 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=24.1
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
|..++|.||+|+|||+|+..+++...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999999885
No 215
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.41 E-value=0.026 Score=47.60 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=23.8
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhccc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAGLV 88 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~~~ 88 (293)
.-.++|.|++|+|||||+..++...+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~ 45 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYP 45 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCE
Confidence 3468999999999999999999886543
No 216
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.36 E-value=0.022 Score=46.84 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=22.2
Q ss_pred CCceeeEecCCCCChhHHHHHHHHH
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+|.|++|+|++|+|||+|+..++.+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999765
No 217
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.35 E-value=0.027 Score=46.57 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=23.8
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+|..+.|.|++|+||||++..++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998864
No 218
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.33 E-value=0.025 Score=48.06 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+++|.|++|+||||++..++..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988764
No 219
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.32 E-value=0.025 Score=48.13 Aligned_cols=24 Identities=13% Similarity=0.291 Sum_probs=21.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+++|.|++|+||||++..++..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988764
No 220
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.31 E-value=0.027 Score=48.59 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=23.7
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..++.++.|.|++|+||||++..++...+
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34678899999999999999999998764
No 221
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.31 E-value=0.028 Score=46.48 Aligned_cols=28 Identities=4% Similarity=0.001 Sum_probs=24.6
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++..+.|.|++|+||||++..++...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3577899999999999999999998764
No 222
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.30 E-value=0.024 Score=57.25 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=29.6
Q ss_pred eeeecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 51 AIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 51 aID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+++.+..+.+|+.++|+|++|+|||||+..|+...
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45555568999999999999999999999987643
No 223
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.29 E-value=0.052 Score=49.09 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=20.9
Q ss_pred CCceeeEecC-CCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSA-AGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~-~G~GKT~L~~~I~~~~~ 86 (293)
+-.+..+++| +|+|||+++..+++..+
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 3335656655 99999999999998874
No 224
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.24 E-value=0.065 Score=52.65 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=23.9
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.....++|.|++|+|||+|+..|++..+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 3455699999999999999999988763
No 225
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.24 E-value=0.03 Score=46.39 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=25.0
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++..+.|.|++|+||||++..++..-+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998764
No 226
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.22 E-value=0.019 Score=51.66 Aligned_cols=32 Identities=13% Similarity=0.323 Sum_probs=27.6
Q ss_pred ccccC---CceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 56 NSIAR---GQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 56 ~pigr---GQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
+.+.+ |+++.|+|++|+|||||+..|+...+.
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34566 999999999999999999999987653
No 227
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.17 E-value=0.016 Score=57.71 Aligned_cols=62 Identities=27% Similarity=0.439 Sum_probs=49.7
Q ss_pred EEEecCCCccccccc--------cccCCCCCCCCcccccccchhhhcccccc--CCccccccceeecCCCCC
Q psy5595 229 ILTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDVG 290 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~--~~Gs~~~~~~~~~~~~~~ 290 (293)
=|++--||++-..-. ++.|.+++||...+......+||+|++.. ..||+|.++++.+++||-
T Consensus 268 dVLli~DslTr~A~A~REisl~lgepP~r~gYp~~vf~~~~rLlERAg~~~~~~~~GSITal~~v~~~~~D~ 339 (515)
T 2r9v_A 268 DALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVRLNDKLGGGSLTALPIVETQANDI 339 (515)
T ss_dssp EEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHHHTTCEEBCTTTTSCEEEEEEEEEESTTCT
T ss_pred cEEEEeccHHHHHHHHHHHhhhcCCCCCcccCChhHHHHhHHHHHHHhhccccCCCcceEEeeeeeccCCCc
Confidence 344456777654322 48899999999888888989999999874 369999999999999983
No 228
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.16 E-value=0.03 Score=46.10 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=23.0
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+-.++|.|++|+||||++..++...+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999988764
No 229
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.15 E-value=0.023 Score=49.93 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=22.0
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++|.|++|+|||+|+..|++...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 389999999999999999999875
No 230
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.13 E-value=0.031 Score=53.02 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=27.3
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.+|+.++|+|++|+|||||+..|+....
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 578999999999999999999999998763
No 231
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.13 E-value=0.028 Score=49.26 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++|.|++|+|||+|+..|++..+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 499999999999999999998874
No 232
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.12 E-value=0.013 Score=53.60 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=30.0
Q ss_pred eeecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 52 IDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 52 ID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
||-++.+-+|+..+|+|++|+|||||+..|+...
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHhcccc
Confidence 6777888899999999999999999999987643
No 233
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.10 E-value=0.03 Score=49.65 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=24.2
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+..++|.|++|+|||+|+..|++..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999874
No 234
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.09 E-value=0.034 Score=47.58 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=24.2
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+|-++.|.|++|+||||++..++...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999998764
No 235
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.07 E-value=0.061 Score=54.12 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=21.0
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
=.+|.||||+|||+.+.+++.+.-
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999998888764
No 236
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.07 E-value=0.15 Score=46.80 Aligned_cols=28 Identities=11% Similarity=0.016 Sum_probs=24.9
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+|..+++.|++|+||||++..++....
T Consensus 96 ~~~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 96 KIPYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SSSEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999998764
No 237
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.06 E-value=0.018 Score=57.05 Aligned_cols=62 Identities=26% Similarity=0.447 Sum_probs=49.3
Q ss_pred EEEecCCCccccccc--------cccCCCCCCCCcccccccchhhhcccccc--CCccccccceeecCCCCC
Q psy5595 229 ILTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDVG 290 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~--~~Gs~~~~~~~~~~~~~~ 290 (293)
=|++--||++-..-. ++.|.+++||...+......+||+|++.. ..||+|.++++.+++||-
T Consensus 255 dVLl~~Dsltr~A~A~REisl~lgepP~~~gYpg~vf~~~~rL~ERAg~~~~~~~~GSITal~~v~~~~dD~ 326 (502)
T 2qe7_A 255 HALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEKGGGSLTALPFIETQAGDV 326 (502)
T ss_dssp EEEEEEECHHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHHHHTSCCBBCTTTTCCEEEEEEEEECSTTCC
T ss_pred cEEEEEecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHHHHHHHhhhcccccCCCcceeEEEEEEccCCCc
Confidence 344445677654322 48899999999888888889999999874 369999999999999884
No 238
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.06 E-value=0.037 Score=46.02 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=26.1
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
...+|..+.|.|.+|+||||++..++....
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345788999999999999999999998764
No 239
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.04 E-value=0.018 Score=54.17 Aligned_cols=30 Identities=7% Similarity=0.166 Sum_probs=27.0
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|.|++|+|||||+..|++..
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 457799999999999999999999998765
No 240
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.03 E-value=0.033 Score=46.57 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=23.7
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+|-.+.|.|++|+||||++..++..-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999998864
No 241
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.02 E-value=0.036 Score=46.16 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=22.1
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++|.|++|+|||+|+..+++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999998775
No 242
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.98 E-value=0.03 Score=46.02 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=19.6
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++..+.|.|++|+||||++..++...+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 677899999999999999999988764
No 243
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.97 E-value=0.026 Score=56.20 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=27.7
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999999999998754
No 244
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.96 E-value=0.03 Score=51.04 Aligned_cols=29 Identities=3% Similarity=0.057 Sum_probs=24.9
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.-+++..++|.|++|+|||||+..|+++.
T Consensus 32 ~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 32 QPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44666669999999999999999999964
No 245
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.95 E-value=0.035 Score=45.90 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=23.5
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
+.+++|.|++|+||||++..++...+.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 356899999999999999999987653
No 246
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.95 E-value=0.028 Score=55.86 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=26.0
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.+.+|+.++|+|++|+|||||+..|+...
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999999998754
No 247
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.92 E-value=0.04 Score=46.39 Aligned_cols=28 Identities=11% Similarity=0.294 Sum_probs=24.2
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++..+.|.|++|+||||++..++...+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999998764
No 248
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.91 E-value=0.032 Score=45.44 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=19.6
Q ss_pred eeeEecCCCCChhHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~ 83 (293)
.+.|.|++|+||||++..++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 578999999999999999998
No 249
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.90 E-value=0.034 Score=45.79 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=22.1
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++.|.|++|+||||++..|+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998765
No 250
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.90 E-value=0.037 Score=47.52 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=24.3
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+|-++.|.|++|+||||++..++...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999998764
No 251
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.90 E-value=0.032 Score=46.31 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=25.2
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.++..++|.|++|+||||++..++...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34577899999999999999999998764
No 252
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.88 E-value=0.025 Score=56.41 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=28.1
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34578899999999999999999999998754
No 253
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.88 E-value=0.038 Score=45.91 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=21.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.|.|++|+||||++..++...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 254
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.83 E-value=0.025 Score=56.56 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=28.7
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 362 ~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 344678899999999999999999999998754
No 255
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.82 E-value=0.037 Score=50.29 Aligned_cols=29 Identities=7% Similarity=0.140 Sum_probs=25.2
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+-.+|..+.|.|++|+|||||+..++...
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45567789999999999999999998865
No 256
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.81 E-value=0.034 Score=46.76 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=19.9
Q ss_pred eeeEecCCCCChhHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~ 83 (293)
+++|.|++|+||||++..|+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 257
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.79 E-value=0.03 Score=53.37 Aligned_cols=30 Identities=10% Similarity=0.044 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 568899999999999999999999998754
No 258
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.78 E-value=0.038 Score=45.37 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=21.6
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.|.|++|+||||++..++...+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 259
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.76 E-value=0.032 Score=46.64 Aligned_cols=23 Identities=13% Similarity=0.419 Sum_probs=21.0
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+++|+|++|+|||+|+..++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 78999999999999999998764
No 260
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.76 E-value=0.036 Score=46.32 Aligned_cols=23 Identities=13% Similarity=0.419 Sum_probs=20.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+++|+|++|+|||+|+..++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 78999999999999999998763
No 261
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.75 E-value=0.021 Score=54.20 Aligned_cols=34 Identities=6% Similarity=0.129 Sum_probs=27.8
Q ss_pred eeecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 52 IDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 52 ID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+|-+....+|+..+|+|++|+|||||+..|+...
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHhccc
Confidence 3445556689999999999999999999887543
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.73 E-value=0.038 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.3
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.+.|.|++|+||||++..+ ...
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4789999999999999999 554
No 263
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.71 E-value=0.032 Score=49.33 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=26.7
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+..++..+.|.|++|+||||++..++...+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567788999999999999999999998764
No 264
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.70 E-value=0.13 Score=53.41 Aligned_cols=28 Identities=7% Similarity=0.156 Sum_probs=24.4
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+...++|.|++|+|||+|+..+++...
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 4556799999999999999999998863
No 265
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.61 E-value=0.041 Score=48.91 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=25.1
Q ss_pred eeeEecCCCCChhHHHHHHHHHhcccccCCcc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAGLVKMPGKS 94 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~ 94 (293)
-+.|.|++|+|||||+..++...+...+..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 36899999999999999999887644444444
No 266
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.58 E-value=0.029 Score=56.23 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=27.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|++++|+|++|+|||||+..|++-.
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 568899999999999999999999988754
No 267
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.57 E-value=0.039 Score=52.18 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=25.9
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+|+.++|.|++|+|||||+..|++..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 6789999999999999999999998865
No 268
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.57 E-value=0.047 Score=46.55 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=25.4
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+|..+.|.|++|+||||++..++...
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999999998865
No 269
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.56 E-value=0.05 Score=47.22 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=24.0
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++.++.|.|++|+||||++..|+..-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998764
No 270
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.55 E-value=0.037 Score=48.12 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=21.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++.|+||||+||+|++..|+..-+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998775
No 271
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.53 E-value=0.02 Score=56.94 Aligned_cols=62 Identities=24% Similarity=0.449 Sum_probs=49.5
Q ss_pred EEEecCCCccccccc--------cccCCCCCCCCcccccccchhhhcccccc--CCccccccceeecCCCCC
Q psy5595 229 ILTMPNDDFKVSAAR--------EEVPGRRGFPGYMYTNLATIYERAGRVEG--RNGSITQIPILTMPNDVG 290 (293)
Q Consensus 229 ~v~~~~~d~~dpi~~--------~~la~~r~~Pai~~~~~~s~~~r~g~~~~--~~Gs~~~~~~~~~~~~~~ 290 (293)
=|++--||++-..-. ++.|.+++||...+......+||+|++.. ..||+|.++++.+++||-
T Consensus 263 dVLli~Dsltr~A~A~REisl~lgepP~r~gYpg~vf~~~~rLlERAg~~~~~~~~GSITal~~v~~~~dD~ 334 (510)
T 2ck3_A 263 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDV 334 (510)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHHHHTTCEEBCGGGTSCEEEEEEEEECSTTCT
T ss_pred cEEEEEcCHHHHHHHHHHHHHhcCCCCccCCcCchHHHhhHHHHHhhhcccccCCCcceeEeeeeccCCCCc
Confidence 344456777754332 48899999999888888889999999864 469999999999999984
No 272
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.52 E-value=0.051 Score=45.62 Aligned_cols=28 Identities=7% Similarity=0.149 Sum_probs=23.8
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+...++|.|++|+||||++..+++.-+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4455789999999999999999998754
No 273
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.49 E-value=0.037 Score=55.90 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=26.0
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.+.+|+.++|+|++|+|||||+..|+...
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999999999998753
No 274
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.48 E-value=0.028 Score=51.07 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=24.8
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..|..++|.|+||+|||+|+..|++..+
T Consensus 44 ~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 44 CTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3478999999999999999999998764
No 275
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.47 E-value=0.024 Score=50.89 Aligned_cols=25 Identities=0% Similarity=-0.035 Sum_probs=22.9
Q ss_pred CceeeEecCCCCChhHHHHHHHHHh
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|+-+.|.|++|+|||+|+.+++++.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc
Confidence 5899999999999999999998774
No 276
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.45 E-value=0.032 Score=55.48 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=26.6
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999999998654
No 277
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.42 E-value=0.13 Score=49.79 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=24.7
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+...++|+|+||+|||+|+..|++...
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999863
No 278
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.39 E-value=0.047 Score=46.78 Aligned_cols=27 Identities=15% Similarity=-0.013 Sum_probs=24.1
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++..+.|.|++|+||||++..++..-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 556899999999999999999998764
No 279
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.37 E-value=0.052 Score=44.77 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=25.2
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.-+.+.+| ..+|+|++|+|||+|+..|..-.
T Consensus 20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 20 VVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 33456677 88999999999999999987654
No 280
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.30 E-value=0.044 Score=43.24 Aligned_cols=23 Identities=9% Similarity=0.257 Sum_probs=20.6
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999988653
No 281
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.28 E-value=0.046 Score=43.07 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999888754
No 282
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.26 E-value=0.044 Score=43.45 Aligned_cols=23 Identities=9% Similarity=0.361 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 78999999999999999998753
No 283
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.25 E-value=0.046 Score=46.07 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=19.3
Q ss_pred eeeEecCCCCChhHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~ 83 (293)
.++|.|++|+||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999976
No 284
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.23 E-value=0.21 Score=48.05 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=23.0
Q ss_pred CceeeEecCCCCChhHHHHHHHHHh
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
...++|.||+|+|||+|+..|++..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999987
No 285
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.22 E-value=0.023 Score=56.63 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=27.4
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|+.++|+|++|+|||||+..|++-.
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3678999999999999999999999887654
No 286
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.19 E-value=0.061 Score=47.15 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=26.9
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
...+|..+.|.|++|+||||++..|+..-.
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 466899999999999999999999998763
No 287
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.18 E-value=0.049 Score=44.06 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=20.3
Q ss_pred ceeeEecCCCCChhHHHHHHHHH
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
-+++|+|++|+|||+|+..++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999998754
No 288
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.18 E-value=0.055 Score=47.62 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=24.4
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++-+++|+|++|+||||++..++..-+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3566899999999999999999998764
No 289
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.16 E-value=0.05 Score=53.91 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=26.4
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.-.+|..++|+||+|+|||+|+..|++...
T Consensus 104 ~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 104 KSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp SSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 333799999999999999999999998764
No 290
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.14 E-value=0.022 Score=53.06 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=26.8
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999999998765
No 291
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.14 E-value=0.047 Score=58.26 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=27.2
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
.=+.+.+|++++|+|++|+|||||+..|+.
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 445789999999999999999999999985
No 292
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.14 E-value=0.058 Score=42.78 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998764
No 293
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.12 E-value=0.048 Score=42.83 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++++|++|+|||+|+..+..+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 78999999999999999998654
No 294
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.10 E-value=0.14 Score=53.12 Aligned_cols=29 Identities=17% Similarity=0.365 Sum_probs=26.1
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+..|..++|.|++|+|||+|+..|+...+
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 56789999999999999999999988763
No 295
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.09 E-value=0.034 Score=48.37 Aligned_cols=28 Identities=7% Similarity=-0.047 Sum_probs=25.1
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+..+|..++|.|+.|+|||||+..|+..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 5578999999999999999999988765
No 296
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.08 E-value=0.046 Score=53.99 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=23.6
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.+| ++|+||+|+|||+|+..|+....
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 4455 99999999999999999998765
No 297
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.08 E-value=0.049 Score=52.93 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=25.5
Q ss_pred ccccCCce--eeEecCCCCChhHHHHHHHHH
Q psy5595 56 NSIARGQK--IPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 56 ~pigrGQr--~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+.+.+|+. ++|+|++|+|||||+..|+..
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 67889999 999999999999999998764
No 298
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.07 E-value=0.088 Score=46.20 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=23.6
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+..++|.|++|+|||+|+..|++...
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 357899999999999999999988763
No 299
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.07 E-value=0.066 Score=46.53 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=24.8
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+|.+++|.|++|+||||++..++...+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999998654
No 300
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.99 E-value=0.045 Score=45.12 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.4
Q ss_pred eeeEecCCCCChhHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~ 83 (293)
|+.|+|++|+|||+|+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999998875
No 301
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.99 E-value=0.059 Score=49.93 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=23.9
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+..++|.||||+|||+++..|++..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 356799999999999999999998874
No 302
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.98 E-value=0.062 Score=51.77 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=24.3
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+..+++.||||+|||+|+..|++..+
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 346799999999999999999999875
No 303
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.96 E-value=0.41 Score=43.58 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=24.9
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+|+.++|.|++|+||||++..++....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999998764
No 304
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.96 E-value=0.054 Score=42.72 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 78999999999999999988654
No 305
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.96 E-value=0.065 Score=43.35 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=21.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++.|.|++|+||||++..++...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 306
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.95 E-value=0.062 Score=43.61 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.7
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
..+.|.|++|+||||++..++...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999987653
No 307
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.95 E-value=0.054 Score=42.92 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999988654
No 308
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.93 E-value=0.06 Score=49.25 Aligned_cols=29 Identities=14% Similarity=-0.110 Sum_probs=25.1
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-.++..++|.|++|+|||||+..|+....
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46788999999999999999998887653
No 309
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.92 E-value=0.39 Score=46.46 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=24.9
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+|+.++|.|++|+||||++..++....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999998764
No 310
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.91 E-value=0.056 Score=43.06 Aligned_cols=23 Identities=9% Similarity=0.355 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 78999999999999999988654
No 311
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.91 E-value=0.032 Score=55.86 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=27.6
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|++++|+|++|+|||||+..|++-.
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3678999999999999999999999887754
No 312
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.88 E-value=0.055 Score=47.93 Aligned_cols=28 Identities=4% Similarity=-0.022 Sum_probs=23.8
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+...++|.||||+|||+++..|++..
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3454569999999999999999998876
No 313
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.85 E-value=0.06 Score=43.06 Aligned_cols=22 Identities=9% Similarity=0.365 Sum_probs=19.7
Q ss_pred eeeEecCCCCChhHHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|++|+|++|+|||+|+..+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 7899999999999999988654
No 314
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.85 E-value=0.061 Score=45.86 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++.|.|++|+||||++..++...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 315
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.71 E-value=0.06 Score=42.63 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999988753
No 316
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.70 E-value=0.058 Score=42.86 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=20.4
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999988643
No 317
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.69 E-value=0.081 Score=46.93 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.1
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
++...++|.|++|+|||+++..+++..
T Consensus 36 ~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 36 KNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp TCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 444469999999999999999999875
No 318
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.68 E-value=0.062 Score=43.17 Aligned_cols=23 Identities=9% Similarity=0.296 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999988654
No 319
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.68 E-value=0.063 Score=43.77 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=20.6
Q ss_pred ceeeEecCCCCChhHHHHHHHHH
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
-+++|+|++|+|||+|+..++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999764
No 320
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.67 E-value=0.062 Score=42.55 Aligned_cols=23 Identities=4% Similarity=0.271 Sum_probs=20.6
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999988753
No 321
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.66 E-value=0.073 Score=43.63 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.7
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
...++|.|++|+||||++..++...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999988764
No 322
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.65 E-value=0.064 Score=47.83 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=22.7
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..++|.|++|+|||+|+..|++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 5799999999999999999999864
No 323
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.63 E-value=0.074 Score=43.73 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=20.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.++|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999865
No 324
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.62 E-value=0.065 Score=42.55 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 78999999999999999988764
No 325
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.61 E-value=0.071 Score=49.54 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=23.4
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
...++|.|++|+|||+|+..|++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998874
No 326
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.60 E-value=0.073 Score=47.42 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.5
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-.+.|.|++|+|||||+..|+...+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998764
No 327
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.60 E-value=0.063 Score=52.71 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=22.1
Q ss_pred eeEecCCCCChhHHHHHHHHHhcc
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
++|.||+|+|||+|+..|++..+.
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANV 75 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 999999999999999999998753
No 328
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.60 E-value=0.064 Score=48.42 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+++|+|++|+|||||+..|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998765
No 329
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.58 E-value=0.066 Score=50.52 Aligned_cols=29 Identities=7% Similarity=-0.030 Sum_probs=24.9
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..+|+.++|.||+|+|||||+..|+....
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 45788999999999999999998877553
No 330
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.57 E-value=0.021 Score=46.06 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.+..++|.|++|+|||+++..|++..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 45679999999999999988776543
No 331
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.52 E-value=0.067 Score=42.96 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 78999999999999999888754
No 332
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.51 E-value=0.079 Score=44.06 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=22.1
Q ss_pred CCceeeEecCCCCChhHHHHHHHHH
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+...++|.|++|+||||++..++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3457899999999999999999886
No 333
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.49 E-value=0.066 Score=43.40 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999988754
No 334
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.49 E-value=0.074 Score=46.82 Aligned_cols=29 Identities=10% Similarity=0.230 Sum_probs=23.8
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
.+.--+.|+||||+||+|++..|+..-+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 34445678999999999999999988753
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.49 E-value=0.066 Score=42.97 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=21.4
Q ss_pred ceeeEecCCCCChhHHHHHHHHHh
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=|++|+|++|+|||+|+..+..+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 379999999999999999998764
No 336
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.48 E-value=0.17 Score=52.97 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=22.1
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-+++.||||+|||+|+..||+..+
T Consensus 240 GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998875
No 337
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.47 E-value=0.086 Score=44.68 Aligned_cols=26 Identities=8% Similarity=-0.114 Sum_probs=22.9
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+|+-..|.|++|+||||++.+++++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 47788999999999999998888776
No 338
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.47 E-value=0.068 Score=43.90 Aligned_cols=25 Identities=8% Similarity=0.072 Sum_probs=21.9
Q ss_pred CceeeEecCCCCChhHHHHHHHHHh
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
-=+++|+|++|+|||+|+..+..+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999998764
No 339
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=92.46 E-value=0.08 Score=50.76 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=25.5
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
-+.+|.+++|+|++|+|||||+.+|...
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4678999999999999999999999873
No 340
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.45 E-value=0.048 Score=49.41 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=23.1
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+..++|.|++|+|||+|+..|++...
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 44599999999999999999999764
No 341
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.44 E-value=0.078 Score=47.94 Aligned_cols=25 Identities=4% Similarity=0.154 Sum_probs=22.3
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..++|.|++|+|||+|+..+++...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5599999999999999999998753
No 342
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.43 E-value=0.074 Score=43.99 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.+.|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998875
No 343
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.42 E-value=0.073 Score=42.40 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=19.1
Q ss_pred eeeEecCCCCChhHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~ 83 (293)
|++|+|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999998864
No 344
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.40 E-value=0.068 Score=42.96 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=20.5
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 78999999999999999887653
No 345
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.39 E-value=0.06 Score=53.55 Aligned_cols=30 Identities=3% Similarity=0.144 Sum_probs=25.9
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
-...+|+..+|+|++|+|||||+..|+...
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345799999999999999999999988643
No 346
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.38 E-value=0.071 Score=43.19 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 78999999999999999998654
No 347
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.37 E-value=0.08 Score=48.47 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=25.9
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..+|+.++|+|++|+||||++..|+....
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999998764
No 348
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.35 E-value=0.072 Score=42.43 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.2
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.=|++|+|++|+|||+|+..+..+.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999987653
No 349
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.31 E-value=0.073 Score=42.62 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999998754
No 350
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.30 E-value=0.08 Score=42.00 Aligned_cols=23 Identities=13% Similarity=0.468 Sum_probs=20.5
Q ss_pred ceeeEecCCCCChhHHHHHHHHH
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=|++|+|++|+|||+|+..+..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999998764
No 351
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.25 E-value=0.086 Score=46.74 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=22.7
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.++..+.|.|.+|+||||++..++..
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35667999999999999999999986
No 352
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.22 E-value=0.073 Score=42.28 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=18.4
Q ss_pred eeeEecCCCCChhHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQIC 82 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~ 82 (293)
|++|+|++|+|||+|+..+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 78999999999999998775
No 353
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.20 E-value=0.077 Score=43.94 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|+.|+|++|+|||+|+..+..+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999887754
No 354
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.20 E-value=0.074 Score=42.58 Aligned_cols=23 Identities=4% Similarity=0.200 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 79999999999999999988653
No 355
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.19 E-value=0.075 Score=44.16 Aligned_cols=26 Identities=4% Similarity=0.065 Sum_probs=21.5
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.-|++|+|++|+|||+|+..+..+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 44599999999999999999998753
No 356
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.18 E-value=0.072 Score=48.80 Aligned_cols=55 Identities=9% Similarity=0.162 Sum_probs=33.5
Q ss_pred CCccccCCCCccccCCCc-eeeeeccc-ccCCce--eeEecCCCCChhHHHHHHHHHhc
Q psy5595 32 EGERSFTPRDLIGDSSGK-RAIDVMNS-IARGQK--IPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 32 ~p~~r~~p~e~l~~~TGi-raID~l~p-igrGQr--~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.||.+++.-.-+.+..|- .+++.|.- +-.|+- .++.||+|+|||+++..+++...
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 377765433323222231 23333322 334433 89999999999999999999863
No 357
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.16 E-value=0.078 Score=43.09 Aligned_cols=23 Identities=9% Similarity=0.296 Sum_probs=21.0
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+....
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 79999999999999999998764
No 358
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.15 E-value=0.084 Score=45.36 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=19.3
Q ss_pred eeEecCCCCChhHHHHHHHHHh
Q psy5595 64 IPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 64 ~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.|.||+|+|||||+..+..+-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5789999999999999987764
No 359
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.12 E-value=0.47 Score=41.40 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=23.8
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+-++.+.+|.++.|+|||.++..++.+.
T Consensus 105 ~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 105 WLVDKRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HTTTSEEEEEESSSTTHHHHHHHHHHHS
T ss_pred HHhCCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999888765
No 360
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.08 E-value=0.051 Score=53.76 Aligned_cols=30 Identities=7% Similarity=-0.070 Sum_probs=26.2
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345789999999999999999999988765
No 361
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.08 E-value=0.079 Score=43.36 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++++|.+|+|||+|+..+..+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 79999999999999999998754
No 362
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.05 E-value=0.083 Score=42.58 Aligned_cols=23 Identities=9% Similarity=0.325 Sum_probs=20.6
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 78999999999999999988653
No 363
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.02 E-value=0.082 Score=42.63 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 79999999999999999988654
No 364
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.01 E-value=0.079 Score=43.00 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999988654
No 365
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.01 E-value=0.082 Score=42.88 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=20.6
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 67999999999999999988653
No 366
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.00 E-value=0.083 Score=42.68 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999988654
No 367
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.00 E-value=0.061 Score=43.47 Aligned_cols=23 Identities=4% Similarity=0.156 Sum_probs=20.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|+.|+|++|+|||+|+..+..+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 78999999999999999988754
No 368
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.00 E-value=0.11 Score=46.31 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=23.5
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
++...++|.|++|+|||+++..+++..
T Consensus 44 ~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 44 GSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 444469999999999999999999886
No 369
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.99 E-value=0.094 Score=43.23 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=21.0
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 78999999999999999988765
No 370
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.98 E-value=0.083 Score=43.46 Aligned_cols=23 Identities=13% Similarity=0.417 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 78999999999999999988754
No 371
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.96 E-value=0.08 Score=43.38 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998754
No 372
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.94 E-value=0.052 Score=59.43 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=28.4
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.|-+||+++|+|++|+|||||+..|.+-.
T Consensus 1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred eeEEECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 33678999999999999999999999998854
No 373
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.90 E-value=0.072 Score=47.54 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=23.1
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
-|.+|+|+||+||||++..|+..-+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999987753
No 374
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.90 E-value=0.087 Score=42.50 Aligned_cols=24 Identities=4% Similarity=-0.022 Sum_probs=21.2
Q ss_pred ceeeEecCCCCChhHHHHHHHHHh
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=|++|+|++|+|||+|+..+..+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999888654
No 375
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.88 E-value=0.088 Score=42.39 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 78999999999999999987754
No 376
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.87 E-value=0.084 Score=44.38 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=21.7
Q ss_pred ceeeEecCCCCChhHHHHHHHHHh
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
-+++|+|++|+|||+|+..+..+.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998765
No 377
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.85 E-value=0.061 Score=51.93 Aligned_cols=21 Identities=5% Similarity=0.164 Sum_probs=20.3
Q ss_pred eeeEecCCCCChhHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~ 83 (293)
.++|+|++|+|||||+..|+.
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 999999999999999999987
No 378
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.80 E-value=0.09 Score=43.46 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=20.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 78999999999999999888754
No 379
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.79 E-value=0.1 Score=44.96 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.4
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++.|.|++|+||||++..++...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988763
No 380
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.78 E-value=0.053 Score=54.88 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=24.7
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQIC 82 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~ 82 (293)
=+.|.+|+.++|+|++|+|||||+..|.
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3678899999999999999999997554
No 381
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.73 E-value=0.08 Score=52.96 Aligned_cols=30 Identities=3% Similarity=0.145 Sum_probs=26.5
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-+..|+.++|.|++|+|||+|+..|++...
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 456789999999999999999999998663
No 382
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.70 E-value=0.092 Score=42.97 Aligned_cols=23 Identities=9% Similarity=0.271 Sum_probs=20.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 79999999999999999998754
No 383
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.67 E-value=0.093 Score=43.07 Aligned_cols=23 Identities=4% Similarity=0.163 Sum_probs=20.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999998764
No 384
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.65 E-value=0.073 Score=53.85 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=22.2
Q ss_pred cccccCCceeeEecCCCCChhHHH
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIA 78 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~ 78 (293)
=+.+.+|+.++|+|++|+|||||+
T Consensus 38 sl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 38 DVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHH
T ss_pred EEEECCCCEEEEECCCCCCHHHHh
Confidence 367889999999999999999997
No 385
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.64 E-value=0.09 Score=42.73 Aligned_cols=23 Identities=4% Similarity=0.101 Sum_probs=20.3
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 68999999999999999887643
No 386
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.64 E-value=0.1 Score=48.38 Aligned_cols=30 Identities=3% Similarity=-0.002 Sum_probs=26.6
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
....+|..++|.|++|+|||||+..++...
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999998654
No 387
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.62 E-value=0.11 Score=43.33 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=20.1
Q ss_pred eeeEecCCCCChhHHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|+.|+|++|+|||+|+..++..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999988864
No 388
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.62 E-value=0.1 Score=41.87 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=19.6
Q ss_pred eeeEecCCCCChhHHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|++|+|++|+|||+|+..+..+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988653
No 389
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.61 E-value=0.065 Score=52.90 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=25.2
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+..|..++|.|+||+|||+|+..|++...
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 34578999999999999999999988763
No 390
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.58 E-value=0.088 Score=46.39 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=23.8
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
..|..++|.|++|+|||+|+.+++..-
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 357889999999999999999998764
No 391
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.57 E-value=0.095 Score=42.41 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 78999999999999999988654
No 392
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.55 E-value=0.097 Score=43.19 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=20.6
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+++|+|++|+|||+|+..+..+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 78999999999999999987654
No 393
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.53 E-value=0.073 Score=43.35 Aligned_cols=23 Identities=0% Similarity=0.196 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999987653
No 394
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.47 E-value=0.1 Score=43.19 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 78999999999999999988754
No 395
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.45 E-value=0.2 Score=44.66 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=22.7
Q ss_pred CCc-eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 60 RGQ-KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 60 rGQ-r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+|. ++.+.|++|+||||++..++....
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 444 578889999999999999998875
No 396
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.44 E-value=0.1 Score=42.78 Aligned_cols=23 Identities=13% Similarity=0.314 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999988654
No 397
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.41 E-value=0.12 Score=41.42 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=22.6
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
-+.-+++|+|++|+|||+|+..+..+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35668999999999999999998764
No 398
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.39 E-value=0.1 Score=42.94 Aligned_cols=23 Identities=4% Similarity=0.027 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999998654
No 399
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.37 E-value=0.11 Score=42.23 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=18.6
Q ss_pred eeeEecCCCCChhHHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|++|+|++|+|||+|+..+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999665543
No 400
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.36 E-value=0.1 Score=42.95 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=21.0
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 79999999999999999998764
No 401
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.33 E-value=0.1 Score=43.14 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 78999999999999999988754
No 402
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.32 E-value=0.11 Score=50.11 Aligned_cols=34 Identities=6% Similarity=-0.085 Sum_probs=27.7
Q ss_pred eeecccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 52 IDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 52 ID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++-++ ..+|+.++|.||.|+|||||+..|+....
T Consensus 159 L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 159 FRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 44343 36899999999999999999999988764
No 403
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.32 E-value=0.077 Score=43.52 Aligned_cols=24 Identities=4% Similarity=0.116 Sum_probs=21.1
Q ss_pred CceeeEecCCCCChhHHHHHHHHH
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
--+++|+|++|+|||+|+..+..+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999988764
No 404
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.32 E-value=0.11 Score=42.42 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 79999999999999999998754
No 405
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.30 E-value=0.12 Score=50.84 Aligned_cols=30 Identities=7% Similarity=-0.004 Sum_probs=26.0
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+ +.++|+|++|+|||||+..|+.-.
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 356778 999999999999999999988754
No 406
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.29 E-value=0.11 Score=42.85 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 78999999999999999988654
No 407
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.29 E-value=0.11 Score=43.00 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=22.7
Q ss_pred CCCceeeeecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 46 ~TGiraID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
-||-..+..+.+ -+-=|++|+|++|+|||+|+..+..+.
T Consensus 14 ~~~~~~~~~~~~-~~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 14 GTENLYFQSMAK-SAEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp --------------CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CccccchhccCC-CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 456666666654 345689999999999999999988754
No 408
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.27 E-value=0.13 Score=45.22 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=22.2
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-.++|.|++|+||||++..++...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3689999999999999999998755
No 409
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.21 E-value=0.12 Score=43.68 Aligned_cols=26 Identities=8% Similarity=0.056 Sum_probs=22.9
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
--++.|+|.+|+|||+|+..++.+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35889999999999999999998763
No 410
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.20 E-value=0.059 Score=45.54 Aligned_cols=25 Identities=4% Similarity=0.053 Sum_probs=22.2
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.++|.|++|+|||||+..|++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5789999999999999999988753
No 411
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.20 E-value=0.06 Score=57.43 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=28.6
Q ss_pred eecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 53 DVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 53 D~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|.=+.+.+|++++|+|++|+|||||+..|+...
T Consensus 691 dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445678999999999999999999999997643
No 412
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.16 E-value=0.14 Score=42.69 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=21.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.++|.|++|+||||++..++..-+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 413
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.16 E-value=0.11 Score=43.49 Aligned_cols=24 Identities=0% Similarity=-0.006 Sum_probs=21.4
Q ss_pred ceeeEecCCCCChhHHHHHHHHHh
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
-|++|+|++|+|||+|+..+..+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998764
No 414
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.06 E-value=0.14 Score=43.46 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=21.1
Q ss_pred CCceeeEecCCCCChhHHHHHHHH
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
++-.++|.|++|+||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999976
No 415
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.03 E-value=0.15 Score=49.97 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=23.7
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
...++|.||+|+|||+|+..+++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999875
No 416
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.99 E-value=0.12 Score=43.03 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=21.1
Q ss_pred ceeeEecCCCCChhHHHHHHHHHh
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=|++|+|++|+|||+|+..+..+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 388999999999999999987653
No 417
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.97 E-value=0.66 Score=44.77 Aligned_cols=28 Identities=4% Similarity=-0.038 Sum_probs=23.9
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
+...+.+.|..|+||||++..++....+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999987753
No 418
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.96 E-value=0.12 Score=43.12 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=22.4
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+-=|++|+|++|+|||+|+..+..+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34489999999999999999998754
No 419
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.92 E-value=0.14 Score=48.58 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=25.0
Q ss_pred ccCCce--eeEecCCCCChhHHHHHHHHHhc
Q psy5595 58 IARGQK--IPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 58 igrGQr--~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+..|++ +.|+|++|+|||||+..|+...+
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 456777 99999999999999999988764
No 420
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.90 E-value=0.045 Score=53.11 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=45.0
Q ss_pred EEecCCCccccc--------cccccCCCCCCCCcccccccchhhhccccccCCccccccceeecC-CCC
Q psy5595 230 LTMPNDDFKVSA--------AREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMP-NDV 289 (293)
Q Consensus 230 v~~~~~d~~dpi--------~~~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~-~~~ 289 (293)
|++--||++-.. +-++++. ++||+..++.+..+|+|++++. ..||+|+++++.++ ++|
T Consensus 263 VLil~DslTR~A~A~revs~~~Ge~ps-~Gyp~~~~~~~~rl~erA~~~~-~~GSIT~i~tvlv~tgdd 329 (422)
T 3ice_A 263 VIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVE-EGGSLTIIATALIDTGSK 329 (422)
T ss_dssp EEEEEECHHHHHHHHHHHSCCSSCBCS-SSCBHHHHHHHHHHHTTCEEES-SSCEEEEEEEECCSSSCH
T ss_pred EEEEEeCchHHHHHHHHHHHhcCCCCC-CCcCHHHHhhhHHHHHhccccC-CCcceeEEEEEEecCCCc
Confidence 344456766432 2347776 8999999999999999999975 59999999999999 543
No 421
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.88 E-value=0.15 Score=45.25 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=23.0
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
++...++|.|++|+|||+++..+++..
T Consensus 40 ~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 40 GNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 343459999999999999999999885
No 422
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.84 E-value=0.13 Score=52.05 Aligned_cols=30 Identities=7% Similarity=0.206 Sum_probs=25.0
Q ss_pred ccccCC-----ceeeEecCCCCChhHHHHHHHHHh
Q psy5595 56 NSIARG-----QKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 56 ~pigrG-----Qr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+.+| +.++|+|++|+|||||+..|+.-.
T Consensus 368 l~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 368 LNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEecCccccceEEEEECCCCCcHHHHHHHHhcCC
Confidence 455555 889999999999999999998654
No 423
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.82 E-value=0.14 Score=41.94 Aligned_cols=25 Identities=12% Similarity=0.412 Sum_probs=21.7
Q ss_pred CceeeEecCCCCChhHHHHHHHHHh
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.-|++|+|++|+|||+|+..+..+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCC
Confidence 3489999999999999999998753
No 424
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.81 E-value=0.15 Score=43.74 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=21.9
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-.++|.|++|+||||++..++...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3689999999999999999988753
No 425
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.80 E-value=0.13 Score=42.35 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=21.1
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998764
No 426
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.78 E-value=0.12 Score=42.99 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999988754
No 427
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.77 E-value=0.12 Score=48.06 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=21.2
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
-++|.|++|+|||||+..|.....
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999887653
No 428
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.76 E-value=0.09 Score=52.57 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=27.2
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+-+|+.+.|+|++|+|||||+..|+....
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 477999999999999999999999998764
No 429
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.74 E-value=0.093 Score=42.86 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.5
Q ss_pred ceeeEecCCCCChhHHHHHHHHH
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=|++|+|++|+|||+|+..+..+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999998764
No 430
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.73 E-value=0.12 Score=43.60 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 78999999999999999988754
No 431
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.72 E-value=0.52 Score=49.25 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=23.7
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
...++++||||+|||.|+..||+..+.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCC
Confidence 345899999999999999999999853
No 432
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.71 E-value=0.13 Score=42.32 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=20.4
Q ss_pred CceeeEecCCCCChhHHHHHHHHH
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.=++.|+|++|+|||+|+..+..+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999987643
No 433
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.71 E-value=0.086 Score=42.76 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=9.5
Q ss_pred eeeEecCCCCChhHHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|++|+|++|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988754
No 434
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.69 E-value=0.11 Score=42.50 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.6
Q ss_pred CCceeeEecCCCCChhHHHHHHHHH
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+-=|++|+|++|+|||+|+..+..+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999988754
No 435
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.65 E-value=0.78 Score=42.55 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=24.1
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
++.-+++|.|.+|+|||||+..++....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556899999999999999999988753
No 436
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.59 E-value=0.13 Score=43.55 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=21.0
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 89999999999999999998754
No 437
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.57 E-value=0.14 Score=42.31 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.6
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999887654
No 438
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=90.53 E-value=0.1 Score=56.96 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=27.8
Q ss_pred cccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 55 MNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 55 l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+.+.+|++++|+|++|+|||||+..|.+-.
T Consensus 1053 sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp CEEECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3578999999999999999999999998743
No 439
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.52 E-value=0.12 Score=53.82 Aligned_cols=31 Identities=10% Similarity=0.216 Sum_probs=27.1
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhccc
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAGLV 88 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~ 88 (293)
+.+|..++|+||||+|||+|+..|++..+..
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4578889999999999999999999987643
No 440
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.51 E-value=0.094 Score=42.73 Aligned_cols=26 Identities=8% Similarity=0.147 Sum_probs=21.6
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
-+.=|++|+|++|+|||+|+..+..+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999988754
No 441
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.47 E-value=0.12 Score=43.28 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.5
Q ss_pred eeeEecCCCCChhHHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|++|+|++|+|||+|+..+..+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999988754
No 442
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.47 E-value=0.15 Score=41.83 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=20.5
Q ss_pred ceeeEecCCCCChhHHHHHHHHHh
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
-|++|+|++|+|||+|+..+..+.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999887543
No 443
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.43 E-value=0.32 Score=49.53 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=24.6
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.++..++|.|++|+|||+|+..+++..
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 468889999999999999999999876
No 444
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.39 E-value=0.15 Score=44.05 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|.+|+|||+|+..|..+.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 78999999999999999988654
No 445
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.33 E-value=0.14 Score=42.81 Aligned_cols=23 Identities=4% Similarity=0.111 Sum_probs=20.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 89999999999999999988754
No 446
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.26 E-value=0.1 Score=42.21 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.0
Q ss_pred cCCceeeEecCCCCChhHHHHHHHH
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
-+.=|++|+|++|+|||+|+..+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3556899999999999999987653
No 447
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.26 E-value=0.17 Score=42.03 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.0
Q ss_pred ceeeEecCCCCChhHHHHHHHHHh
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=+++|+|++|+|||+|+..+....
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 478999999999999999988643
No 448
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.26 E-value=0.13 Score=42.57 Aligned_cols=24 Identities=4% Similarity=0.104 Sum_probs=20.0
Q ss_pred ceeeEecCCCCChhHHHHHHHHHh
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=|++|+|++|+|||+|+..+..+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 479999999999999999887543
No 449
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.23 E-value=1.4 Score=43.50 Aligned_cols=28 Identities=7% Similarity=0.072 Sum_probs=23.2
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+...+.|+|.+|+||||++..++....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566899999999999999999998764
No 450
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.20 E-value=0.18 Score=49.22 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.4
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
...++++||||+|||+|+..++...+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35699999999999999999999875
No 451
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=90.19 E-value=0.11 Score=56.84 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=28.1
Q ss_pred ecccccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 54 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 54 ~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.=+.+.+|++++|+|++|+|||||+..|.+-.
T Consensus 409 isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33578999999999999999999999988754
No 452
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.17 E-value=0.18 Score=47.08 Aligned_cols=25 Identities=4% Similarity=0.086 Sum_probs=22.6
Q ss_pred CceeeEecCCCCChhHHHHHHHHHh
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.+++|+|++|+|||||+..++...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 7889999999999999999998753
No 453
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.16 E-value=0.15 Score=42.80 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=22.0
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
+.=|++|+|++|+|||+|+..+..+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 34589999999999999999888764
No 454
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.07 E-value=0.15 Score=42.54 Aligned_cols=24 Identities=4% Similarity=-0.076 Sum_probs=21.2
Q ss_pred ceeeEecCCCCChhHHHHHHHHHh
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=|++|+|++|+|||+|+..+..+.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999988654
No 455
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.07 E-value=0.19 Score=42.37 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=23.7
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
-.+--++.|+|.+|+|||+|+..++.+.
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444578999999999999999999875
No 456
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.05 E-value=0.16 Score=43.14 Aligned_cols=23 Identities=4% Similarity=0.166 Sum_probs=20.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|+.|+|++|+|||+|+..+..+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 78999999999999999998764
No 457
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.04 E-value=0.16 Score=42.53 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.5
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 78999999999999999887653
No 458
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.04 E-value=0.073 Score=44.76 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=21.2
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
.+.|.|++|+||||++..++....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998763
No 459
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.02 E-value=0.17 Score=48.59 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=21.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHhc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
..+|.|+||+|||+++..++....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998887663
No 460
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.99 E-value=0.13 Score=43.02 Aligned_cols=23 Identities=4% Similarity=0.033 Sum_probs=20.1
Q ss_pred CceeeEecCCCCChhHHHHHHHH
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
--+++|+|++|+|||+|+..+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999998864
No 461
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.98 E-value=0.16 Score=42.35 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=20.9
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 79999999999999999988754
No 462
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.96 E-value=0.16 Score=44.08 Aligned_cols=23 Identities=4% Similarity=0.200 Sum_probs=20.7
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|+.|+|++|||||+|+..+..+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 79999999999999999887654
No 463
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.94 E-value=0.19 Score=45.80 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=23.3
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.+..++|.|++|+|||+++..|++..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 46789999999999999999999865
No 464
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.91 E-value=0.18 Score=42.29 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=19.9
Q ss_pred eeeEecCCCCChhHHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|++|+|++|+|||+|+..+..+
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988754
No 465
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.91 E-value=0.14 Score=42.89 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=18.8
Q ss_pred eeeEecCCCCChhHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~ 83 (293)
|+.|+|++|+|||+|+..+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999998753
No 466
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=89.85 E-value=0.13 Score=46.84 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=22.3
Q ss_pred CCceeeEecCCCCChhHHHHHHHHH
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
++.+++|+|++|+|||||+..|..+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5568999999999999999999865
No 467
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.82 E-value=0.78 Score=38.35 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=21.6
Q ss_pred CceeeEecCCCCChhHHHHHHHHHh
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
--+++|+|.+|+|||+|+..+..+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999887653
No 468
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.77 E-value=0.21 Score=45.41 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=22.2
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+-++|.|++|+|||+++..+++...
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3479999999999999999998775
No 469
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.69 E-value=0.14 Score=46.66 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=18.4
Q ss_pred eeeEecCCCCChhHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~ 83 (293)
+++|+|++|+|||||+..|..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 349999999999999998764
No 470
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.62 E-value=0.18 Score=44.79 Aligned_cols=22 Identities=5% Similarity=0.143 Sum_probs=20.0
Q ss_pred eeeEecCCCCChhHHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~ 84 (293)
+++|+|++|+|||+|+..+...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999998754
No 471
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.62 E-value=0.16 Score=47.43 Aligned_cols=32 Identities=6% Similarity=0.062 Sum_probs=25.2
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhcccccCCc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAGLVKMPGK 93 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~ 93 (293)
..+.|.|++|+|||+|+..++...+...+..|
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 36899999999999999999998754333333
No 472
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=89.55 E-value=0.16 Score=48.80 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=24.3
Q ss_pred cccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 57 SIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 57 pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
-+.+|.+++|+|.+|+|||||+..+..+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568899999999999999999998765
No 473
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.50 E-value=0.19 Score=41.59 Aligned_cols=22 Identities=9% Similarity=0.315 Sum_probs=19.2
Q ss_pred eeeEecCCCCChhHHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|++|+|++|+|||+|+..+..+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988654
No 474
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.48 E-value=0.18 Score=41.84 Aligned_cols=24 Identities=8% Similarity=0.074 Sum_probs=20.6
Q ss_pred CCceeeEecCCCCChhHHHHHHHH
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
+.=|++|+|++|+|||+|+..+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445899999999999999998754
No 475
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.41 E-value=0.18 Score=47.53 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=24.6
Q ss_pred eeeEecCCCCChhHHHHHHHHHhcccccCCc
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQAGLVKMPGK 93 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~ 93 (293)
-++|.||+|+|||+|+..|+.+.+...+..|
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 5799999999999999999998753333333
No 476
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.38 E-value=0.16 Score=41.70 Aligned_cols=24 Identities=4% Similarity=0.014 Sum_probs=20.8
Q ss_pred ceeeEecCCCCChhHHHHHHHHHh
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
=|++|+|++|+|||+|+..+..+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999887654
No 477
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.36 E-value=0.25 Score=41.76 Aligned_cols=24 Identities=4% Similarity=0.070 Sum_probs=21.0
Q ss_pred ceeeEecCCCCChhHHHHHHHHHh
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
..++|.|++|+|||||+..++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 467899999999999999888764
No 478
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.32 E-value=0.16 Score=55.67 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=27.8
Q ss_pred ccccCCceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 56 NSIARGQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 56 ~pigrGQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+.|-+|++++|+|++|+|||||+..|.+-..
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 5688999999999999999999999988653
No 479
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.30 E-value=0.25 Score=41.77 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.9
Q ss_pred CceeeEecCCCCChhHHHHHHHHHhc
Q psy5595 61 GQKIPIFSAAGLPHNEIAAQICRQAG 86 (293)
Q Consensus 61 GQr~~I~g~~G~GKT~L~~~I~~~~~ 86 (293)
+..+.|.|++|+||||++..++...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999988764
No 480
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.27 E-value=0.2 Score=42.26 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=20.0
Q ss_pred ceeeEecCCCCChhHHHHHHHHH
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=|++|+|++|+|||+|+..+..+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 38999999999999999988754
No 481
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.27 E-value=0.21 Score=43.06 Aligned_cols=21 Identities=10% Similarity=0.314 Sum_probs=19.2
Q ss_pred eeeEecCCCCChhHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~ 83 (293)
|+.|+|++|+|||+|+..+..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998763
No 482
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.12 E-value=0.2 Score=42.46 Aligned_cols=23 Identities=13% Similarity=0.403 Sum_probs=20.8
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
|++|+|++|+|||+|+..+..+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 78999999999999999988754
No 483
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.12 E-value=0.76 Score=40.50 Aligned_cols=126 Identities=10% Similarity=0.115 Sum_probs=62.6
Q ss_pred ccCCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecCccchhHHHHHHhhhhCCccccEEEEe
Q psy5595 58 IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFL 137 (293)
Q Consensus 58 igrGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~~~~tvvv~ 137 (293)
-.+|+=..+.|+.|+||||.+..+++++... + ....++--.++.|..+.. +...+ |.--.+..+
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~---g--------~kVli~k~~~d~R~ge~~-i~s~~---g~~~~a~~~- 88 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFA---K--------QHAIVFKPCIDNRYSEED-VVSHN---GLKVKAVPV- 88 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHT---T--------CCEEEEECC---------------------CCEEEC-
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHC---C--------CEEEEEEeccCCcchHHH-HHhhc---CCeeEEeec-
Confidence 3567777889999999999999888877421 1 123333335666533221 22111 211112211
Q ss_pred eCCCCchhhhhchHHHHHHHHHHHHHhcCCceEEEecchhHH----HHHHHHHhhhcCCCC----CC-CCCCCchhhhHH
Q psy5595 138 NLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSY----AEALREVSAAREEVP----GR-RGFPGYMYTNLA 208 (293)
Q Consensus 138 stsd~~~~~r~~a~~~a~tiAEyfr~~~G~~VLli~Dsltr~----a~A~reisl~~ge~p----~~-~gyp~~lf~~la 208 (293)
.+. . +.+..-.++.-+|++|..--+ .+..+++... + .| |+ --|.+.+|...+
T Consensus 89 --~~~---~------------~~~~~~~~~~dvViIDEaQF~~~~~V~~l~~l~~~-~-~~Vi~~Gl~~DF~~~~F~~~~ 149 (214)
T 2j9r_A 89 --SAS---K------------DIFKHITEEMDVIAIDEVQFFDGDIVEVVQVLANR-G-YRVIVAGLDQDFRGLPFGQVP 149 (214)
T ss_dssp --SSG---G------------GGGGGCCSSCCEEEECCGGGSCTTHHHHHHHHHHT-T-CEEEEEECSBCTTSCBCTTHH
T ss_pred --CCH---H------------HHHHHHhcCCCEEEEECcccCCHHHHHHHHHHhhC-C-CEEEEEecccccccCccccHH
Confidence 111 0 111111123457888987543 3344444321 2 22 22 368899999999
Q ss_pred HHhhhhcccC
Q psy5595 209 TIYERAGRVE 218 (293)
Q Consensus 209 ~l~ERag~~~ 218 (293)
+|++.|-.+.
T Consensus 150 ~Ll~~AD~Vt 159 (214)
T 2j9r_A 150 QLMAIAEHVT 159 (214)
T ss_dssp HHHHHCSEEE
T ss_pred HHHHhcccEE
Confidence 9999887764
No 484
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=89.11 E-value=0.16 Score=49.31 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=43.9
Q ss_pred EEecCCCccccc--------cccccCCCCCCCCcccccccchhhhccccccCCccccccceeecCCCC
Q psy5595 230 LTMPNDDFKVSA--------AREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDV 289 (293)
Q Consensus 230 v~~~~~d~~dpi--------~~~~la~~r~~Pai~~~~~~s~~~r~g~~~~~~Gs~~~~~~~~~~~~~ 289 (293)
|++--||++-.. +-++++. ++||+........+|+|++++. +.||+|+++++.+++||
T Consensus 264 VLil~DslTR~A~A~rEvs~~~Ge~~s-~Gypp~~~~~~~~~~erA~~ie-~~GSIT~i~tvlvetgd 329 (427)
T 3l0o_A 264 VVILLDSLTRLARVYNIVVPPSGKLLT-GGVDPAALYKPKRFFGAARNTR-EGGSLTIIATALVETGS 329 (427)
T ss_dssp EEEEEECHHHHHHHHHHHSCCCSCCCS-SSCCSSCSHHHHHHHHTCEEES-SSCEEEEEEEEECSSSC
T ss_pred EEEecccchHHHHHHHHHHHhcCCCCC-CCcCchhhcchHHHHHhhcccC-CCcceeEEEEEEecCCC
Confidence 444456776443 1235555 6999999999999999999975 69999999999888443
No 485
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.09 E-value=0.15 Score=43.58 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=20.5
Q ss_pred ceeeEecCCCCChhHHHHHHHHH
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=+++|+|++|+|||+|+..+..+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999988764
No 486
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.02 E-value=0.25 Score=42.81 Aligned_cols=26 Identities=4% Similarity=0.107 Sum_probs=23.4
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
||..+.|.|+.|+||||++..++...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46778999999999999999999875
No 487
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=88.97 E-value=0.1 Score=43.06 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=5.1
Q ss_pred ceeeEecCCCCChhHHHHHHHHH
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
=|++|+|++|+|||+|+..+..+
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 38999999999999999988766
No 488
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.94 E-value=0.28 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.4
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.++|.||||+|||.++..|++..
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhh
Confidence 69999999999999999999875
No 489
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.88 E-value=0.17 Score=47.75 Aligned_cols=37 Identities=8% Similarity=0.215 Sum_probs=28.1
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHhcccccCCccc
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSV 95 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~ 95 (293)
.++.-+.|.||.|+|||+|+..++...+..-|..|++
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3556789999999999999999999875433334433
No 490
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.80 E-value=0.23 Score=44.28 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=20.1
Q ss_pred eeeEecCCCCChhHHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.+.|.|++|+||||++..++..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999999875
No 491
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.65 E-value=0.28 Score=41.51 Aligned_cols=23 Identities=4% Similarity=-0.047 Sum_probs=20.5
Q ss_pred eeeEecCCCCChhHHHHHHHHHh
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.++|.|++|+|||||+..++...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999998864
No 492
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.50 E-value=0.28 Score=50.11 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=24.5
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHHh
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
.+...++|.|+||+|||+|+..+++..
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 566789999999999999999999886
No 493
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.44 E-value=0.25 Score=43.11 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.3
Q ss_pred ceeeEecCCCCChhHHHHHHHHHh
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQA 85 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~ 85 (293)
-|++|+|.+|+|||+|+..|..+.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999988654
No 494
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=88.44 E-value=0.25 Score=40.92 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=19.1
Q ss_pred eeeEecCCCCChhHHHHHHHHH
Q psy5595 63 KIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 63 r~~I~g~~G~GKT~L~~~I~~~ 84 (293)
|+.|+|++|+|||+|+..+.++
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999998866553
No 495
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.44 E-value=0.26 Score=42.58 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=22.8
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
..|.-++|.|++|+|||||+.++.+.
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 35778999999999999999988874
No 496
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=88.44 E-value=0.19 Score=48.44 Aligned_cols=33 Identities=6% Similarity=0.031 Sum_probs=28.5
Q ss_pred eeecccccCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 52 IDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 52 ID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
-|.-+.+-.|..++|+|++|+|||||+..|+..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 455567888999999999999999999998765
No 497
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.36 E-value=2 Score=39.28 Aligned_cols=74 Identities=9% Similarity=0.047 Sum_probs=43.8
Q ss_pred CCceeeEecCCCCChhHHHHHHHHHhcccccCCccccCCCCCceEEEEEecC-cc-chhHHHHHHhhhhCCcc-ccEEEE
Q psy5595 60 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMG-VN-METARFFKQDFEENGSM-ENVCLF 136 (293)
Q Consensus 60 rGQr~~I~g~~G~GKT~L~~~I~~~~~~~~~~~~~~~~~~~~~~~~V~~~iG-er-~e~~~~~~~~l~~~g~~-~~tvvv 136 (293)
+..-.++.||+|+|||+++..++++.+.+ .. .+.++..+-+-| +. -++++++.+.+...... ++.++|
T Consensus 17 ~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~--------~~-~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvvi 87 (305)
T 2gno_A 17 EGISILINGEDLSYPREVSLELPEYVEKF--------PP-KASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVI 87 (305)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTS--------CC-CTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhCchh--------hc-cCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEE
Confidence 34578999999999999999999874321 00 123444444433 22 35566666655433221 356666
Q ss_pred eeCCCC
Q psy5595 137 LNLAND 142 (293)
Q Consensus 137 ~stsd~ 142 (293)
+--++.
T Consensus 88 Idead~ 93 (305)
T 2gno_A 88 VHDCER 93 (305)
T ss_dssp ETTGGG
T ss_pred eccHHH
Confidence 655544
No 498
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.34 E-value=0.26 Score=52.26 Aligned_cols=33 Identities=12% Similarity=-0.171 Sum_probs=28.3
Q ss_pred eeeecccccCCceeeEecCCCCChhHHHHHHHH
Q psy5595 51 AIDVMNSIARGQKIPIFSAAGLPHNEIAAQICR 83 (293)
Q Consensus 51 aID~l~pigrGQr~~I~g~~G~GKT~L~~~I~~ 83 (293)
.-|.-+.+.+|+-++|.||+|+||||++.+|+.
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 346667788999999999999999999998854
No 499
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=88.24 E-value=0.3 Score=50.95 Aligned_cols=26 Identities=8% Similarity=-0.104 Sum_probs=24.0
Q ss_pred cCCceeeEecCCCCChhHHHHHHHHH
Q psy5595 59 ARGQKIPIFSAAGLPHNEIAAQICRQ 84 (293)
Q Consensus 59 grGQr~~I~g~~G~GKT~L~~~I~~~ 84 (293)
.+|+.++|.||+|+|||||+.+|+..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 68999999999999999999988764
No 500
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.22 E-value=0.26 Score=46.15 Aligned_cols=26 Identities=4% Similarity=0.170 Sum_probs=22.3
Q ss_pred ceeeEecCCCCChhHHHHHHHHHhcc
Q psy5595 62 QKIPIFSAAGLPHNEIAAQICRQAGL 87 (293)
Q Consensus 62 Qr~~I~g~~G~GKT~L~~~I~~~~~~ 87 (293)
--+.|.||+|+|||+|+..++.....
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCcc
Confidence 35789999999999999999987653
Done!