RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5595
(293 letters)
>gnl|CDD|233244 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 466
Score = 433 bits (1115), Expect = e-152
Identities = 179/198 (90%), Positives = 186/198 (93%), Gaps = 2/198 (1%)
Query: 39 PRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD 98
P ++I +G AIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK+P K V D
Sbjct: 121 PEEMI--QTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDG 178
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
EDNFAIVFAAMGVNMETARFFKQDFEENGSME VCLFLNLANDPTIERIITPRLALTTA
Sbjct: 179 HEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTA 238
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+LAYQCEKHVLVILTDMSSYA+ALREVSAAREEVPGRRGFPGYMYT+LATIYERAGRVE
Sbjct: 239 EYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVE 298
Query: 219 GRNGSITQIPILTMPNDD 236
GRNGSITQIPILTMPNDD
Sbjct: 299 GRNGSITQIPILTMPNDD 316
Score = 67.4 bits (165), Expect = 1e-12
Identities = 25/31 (80%), Positives = 29/31 (93%)
Query: 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 31
MKAVVGEEAL+ +DLLYLEFL KFEKNF++Q
Sbjct: 391 MKAVVGEEALSSEDLLYLEFLDKFEKNFIAQ 421
>gnl|CDD|238555 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic)
subunit B. These ATPases couple ATP hydrolysis to the
build up of a H+ gradient, but V-type ATPases do not
catalyze the reverse reaction. The Vacuolar (V-type)
ATPase is found in the membranes of vacuoles, the golgi
apparatus and in other coated vesicles in eukaryotes.
Archaea have a protein which is similar in sequence to
V-ATPases, but functions like an F-ATPase (called
A-ATPase). A similar protein is also found in a few
bacteria. This subfamily consists of the non-catalytic
beta subunit.
Length = 276
Score = 373 bits (959), Expect = e-131
Identities = 148/198 (74%), Positives = 169/198 (85%), Gaps = 11/198 (5%)
Query: 39 PRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD 98
P ++I +G AID MN++ RGQKIPIFS +GLPHNE+AAQI RQAG+V
Sbjct: 49 PEEMI--QTGISAIDGMNTLVRGQKIPIFSGSGLPHNELAAQIARQAGVVG--------- 97
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
E+NFA+VFAAMG+ ME ARFFK DFEE G++E V LFLNLANDPTIERIITPR+ALTTA
Sbjct: 98 EEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTA 157
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+LAY+ KHVLVILTDM++YAEALRE+SAAREEVPGRRG+PGYMYT+LATIYERAGRVE
Sbjct: 158 EYLAYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVE 217
Query: 219 GRNGSITQIPILTMPNDD 236
GRNGSITQIPILTMPNDD
Sbjct: 218 GRNGSITQIPILTMPNDD 235
>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
Length = 460
Score = 352 bits (906), Expect = e-120
Identities = 129/198 (65%), Positives = 160/198 (80%), Gaps = 11/198 (5%)
Query: 39 PRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD 98
P + I +G AID +N++ RGQK+PIFS +GLPHNE+AAQI RQA K+ G
Sbjct: 123 PEEFI--QTGISAIDGLNTLVRGQKLPIFSGSGLPHNELAAQIARQA---KVLG------ 171
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
E+NFA+VFAAMG+ E A FF +DFEE G++E +FLNLA+DP IERI+TPR+ALT A
Sbjct: 172 EEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAA 231
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+LA++ HVLVILTDM++Y EALRE+SAAREEVPGRRG+PGYMYT+LATIYERAGR++
Sbjct: 232 EYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIK 291
Query: 219 GRNGSITQIPILTMPNDD 236
G+ GSITQIPILTMP+DD
Sbjct: 292 GKKGSITQIPILTMPDDD 309
Score = 43.3 bits (103), Expect = 1e-04
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 3 AVVGEEALTPDDLLYLEFLTKFEKNFVSQ 31
A+VGEEAL+ D YL+F FE+ FV+Q
Sbjct: 386 AIVGEEALSERDRKYLKFADAFEREFVNQ 414
>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy
production and conversion].
Length = 463
Score = 340 bits (875), Expect = e-115
Identities = 128/198 (64%), Positives = 156/198 (78%), Gaps = 11/198 (5%)
Query: 39 PRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD 98
P + I +G AID MN++ RGQK+PIFS +GLPHNE+AAQI RQA + D
Sbjct: 126 PEEFI--QTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQATV---------DG 174
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
E+ FA+VFAAMG+ E A FF +FEE G+++ LFLNLA+DP +ERIITPR+ALT A
Sbjct: 175 EEEEFAVVFAAMGITHEEALFFMDEFEETGALDRAVLFLNLADDPAVERIITPRMALTVA 234
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+LA++ + HVLVILTDM++Y EALRE+SAAREEVPGRRG+PGYMYT+LATIYERAGR+
Sbjct: 235 EYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIR 294
Query: 219 GRNGSITQIPILTMPNDD 236
GR GSITQIPILTMP DD
Sbjct: 295 GRKGSITQIPILTMPGDD 312
Score = 43.5 bits (103), Expect = 9e-05
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQE 32
+ AVVGEEAL+ D YL+F FE+ F+ Q
Sbjct: 387 LVAVVGEEALSERDRKYLKFADLFEQRFIKQG 418
>gnl|CDD|200071 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 458
Score = 305 bits (782), Expect = e-102
Identities = 127/198 (64%), Positives = 157/198 (79%), Gaps = 11/198 (5%)
Query: 39 PRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD 98
P + I +G AID MN++ RGQK+PIFS +GLPHNE+AAQI RQA + G
Sbjct: 121 PEEFI--QTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQA---TVRG------ 169
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
E FA+VFAAMG+ E A FF +DFEE G++E +FLNLA+DP +ERI+TPR+ALT A
Sbjct: 170 EESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAA 229
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+LA++ + HVLVILTDM++Y EALRE+SAAREEVPGRRG+PGYMYT+LATIYERAGRV+
Sbjct: 230 EYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVK 289
Query: 219 GRNGSITQIPILTMPNDD 236
G+ GSITQ+PILTMP DD
Sbjct: 290 GKKGSITQMPILTMPGDD 307
Score = 39.3 bits (92), Expect = 0.002
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 3 AVVGEEALTPDDLLYLEFLTKFEKNFVSQ 31
A+VGEEAL+ D YL+F FE+ FV Q
Sbjct: 384 AIVGEEALSERDRKYLKFADLFERKFVRQ 412
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 202 bits (516), Expect = 7e-65
Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 16/190 (8%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVF 107
G RAID++ I +GQ+I IF +G + I R A + + V+
Sbjct: 2 GIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNA--------------KADVVEVY 47
Query: 108 AAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 167
+G F ++ G+++ + +++P ER + P ALT AE+ Q K
Sbjct: 48 VLIGERGREVAEFIEELLGEGALKRTVVVAATSDEPPAERYLAPYTALTIAEYFRDQ-GK 106
Query: 168 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQI 227
VL++L ++ +A ALRE+S E PGR G+PG ++++LA + ERAG+VEG GSIT +
Sbjct: 107 DVLLLLDSLTRFARALREISLLLGEPPGREGYPGSLFSDLARLLERAGKVEG-GGSITAL 165
Query: 228 PILTMPNDDF 237
P + +P D
Sbjct: 166 PTVLVPGGDI 175
>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional.
Length = 436
Score = 171 bits (436), Expect = 2e-50
Identities = 77/198 (38%), Positives = 120/198 (60%), Gaps = 18/198 (9%)
Query: 39 PRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD 98
PR++I +G IDV N++ QKIPIFS +G P+N + A+I QA
Sbjct: 120 PREMI--RTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLARIALQA------------- 164
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
+ I+ MG+ + FFK FE G+++ +F++ A+DP +E ++ P +AL A
Sbjct: 165 --EADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVA 222
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E A + +K VLV+LTDM+++A+AL+E+S +++P RG+PG +Y++LA+ YE+A E
Sbjct: 223 EKFALEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFE 282
Query: 219 GRNGSITQIPILTMPNDD 236
GSIT I + TMP DD
Sbjct: 283 D-GGSITIIAVTTMPGDD 299
>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy
production and conversion].
Length = 504
Score = 79.6 bits (197), Expect = 9e-17
Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 41/223 (18%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVF 107
G +AID + I RGQ+ I RQ G + ++++ ++
Sbjct: 149 GIKAIDALIPIGRGQRELIIGD-------------RQTGKTAIAIDTIINQKGSGVKCIY 195
Query: 108 AAMGVNMET-ARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 166
A+G T A + EE+G+M+ + A+D + + P AE+
Sbjct: 196 VAIGQKRSTVANVVRT-LEEHGAMDYTIVVAASASDSAPLQYLAPYAGCAMAEYFRDN-G 253
Query: 167 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPG---YMYTNLATIYERAGRVEGRN-- 221
K VL++ D+S +A A RE+S PGR +PG Y+++ L ERA ++
Sbjct: 254 KDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRL---LERAAKLSDELGG 310
Query: 222 GSITQIPIL-TMPNDDFKVSAAREEVPGRRGFPGYMYTNLATI 263
GSIT +PI+ T D VSA Y+ TN+ +I
Sbjct: 311 GSITALPIIETQAGD---VSA-------------YIPTNVISI 337
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 78.9 bits (195), Expect = 1e-16
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 26/186 (13%)
Query: 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAI 105
+G RAID + + GQ+I IF+ AG+ + + I R A S D
Sbjct: 130 PTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA-------------SAD--VN 174
Query: 106 VFAAMGVNMETAR----FFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFL 161
V A +G E R F + E G +V L ++ ++ P++ER+ A AE+
Sbjct: 175 VIALIG---ERGREVREFIEHHLGEEGRKRSV-LVVSTSDRPSLERLKAAYTATAIAEYF 230
Query: 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRN 221
Q K VL+++ ++ +A ALRE+ A E P R G+P ++++L + ERAG E
Sbjct: 231 RDQ-GKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNGE--K 287
Query: 222 GSITQI 227
GSIT +
Sbjct: 288 GSITAL 293
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 77.6 bits (192), Expect = 4e-16
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 38/190 (20%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVL------DDSED 101
G RAID + + +GQ+I IF+ +G+ GKS L + D
Sbjct: 150 GVRAIDGLLTCGKGQRIGIFAGSGV-------------------GKSTLLGMIARNTEAD 190
Query: 102 NFAIVFAAMGVNMETAR----FFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTT 157
V A +G E R F ++D E G ++ + + +++ + R+ A T
Sbjct: 191 --VNVIALIG---ERGREVREFIEKDLGEEG-LKRSVVVVATSDESALMRLKAAFTATTI 244
Query: 158 AEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRV 217
AE+ Q K VL+I+ ++ +A A RE+ A E P +G+P +++ L + ERAG
Sbjct: 245 AEYFRDQ-GKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAG-- 301
Query: 218 EGRNGSITQI 227
G GSIT
Sbjct: 302 NGDKGSITAF 311
>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha
subunit. The sequences of ATP synthase F1 alpha and
beta subunits are related and both contain a
nucleotide-binding site for ATP and ADP. They have a
common amino terminal domain but vary at the C-terminus.
The beta chain has catalytic activity, while the alpha
chain is a regulatory subunit. The alpha-subunit
contains a highly conserved adenine-specific
noncatalytic nucleotide-binding domain. The conserved
amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton
translocating ATP synthase F1, alpha subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), B subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 501
Score = 76.7 bits (189), Expect = 8e-16
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 26/201 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G +AID M I RGQ+ I RQ G + ++++ + + +
Sbjct: 147 TGIKAIDAMIPIGRGQRELIIGD-------------RQTGKTAVAIDTIINQKDSDVYCI 193
Query: 107 FAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 166
+ A+G T + EE+G+M + A+D + + P T E+
Sbjct: 194 YVAIGQKASTVAQVVRKLEEHGAMAYTIVVAATASDSASLQYLAPYTGCTMGEYFRDN-G 252
Query: 167 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPG---YMYTNLATIYERAGRV--EGRN 221
KH L+I D+S A A R++S PGR FPG Y+++ L ERA ++ E
Sbjct: 253 KHALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRL---LERAAKLNDEKGG 309
Query: 222 GSITQIPIL-TMPNDDFKVSA 241
GS+T +PI+ T D VSA
Sbjct: 310 GSLTALPIIETQAGD---VSA 327
Score = 34.7 bits (80), Expect = 0.047
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 9/53 (16%)
Query: 247 PGRRGFPG---YMYTNLATIYERAGRV--EGRNGSITQIPIL-TMPNDVGASI 293
PGR FPG Y+++ L ERA ++ E GS+T +PI+ T DV A I
Sbjct: 280 PGREAFPGDVFYLHSRL---LERAAKLNDEKGGGSLTALPIIETQAGDVSAYI 329
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 578
Score = 71.7 bits (176), Expect = 5e-14
Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEF---LAYQCEKHVLVILTDMSSYAEALREV 186
ME L N +N P R + +T AE+ + Y V ++ S +AEA+RE+
Sbjct: 283 MERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYD----VALMADSTSRWAEAMREI 338
Query: 187 SAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
S EE+PG G+P Y+ + LA YERAGRV E R GS+T I ++ P DF
Sbjct: 339 SGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGDF 394
Score = 46.6 bits (111), Expect = 8e-06
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 239 VSAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQI 280
+S EE+PG G+P Y+ + LA YERAGRV E R GS+T I
Sbjct: 338 ISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVI 384
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 67.9 bits (166), Expect = 6e-14
Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 34/174 (19%)
Query: 63 KIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQ 122
I +F G +A Q+ GK +V+ + +E
Sbjct: 1 LILVFGPTGSGKTTLALQLALNI--ATKGGK-----------VVYVDIEEEIEELTERLI 47
Query: 123 DFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEA 182
G+++N+ + A+DP R+ + + L+IL +++ A
Sbjct: 48 GESLKGALDNLIIVFATADDPAAARL-------LSKAERLRERGGDDLIILDELTRLVRA 100
Query: 183 LREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDD 236
LRE+ PG + L + ERA R G +T I L +P+ D
Sbjct: 101 LREIREGY---------PGELDEELRELLERA-----RKGGVTVIFTLQVPSGD 140
Score = 31.7 bits (72), Expect = 0.24
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 242 AREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDV 289
R R G+PG + L + ERA R G +T I L +P+
Sbjct: 98 VRALREIREGYPGELDEELRELLERA-----RKGGVTVIFTLQVPSGD 140
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 70.0 bits (172), Expect = 2e-13
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAA 189
M+ L N +N P R + +T AE+ V ++ S +AEALRE+S
Sbjct: 285 MDRTVLIANTSNMPVAAREASIYTGITIAEYYR-DMGYDVALMADSTSRWAEALREISGR 343
Query: 190 REEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE+PG G+P Y+ + LA YERAGRV E R GSIT I ++ P DF
Sbjct: 344 LEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAVSPPGGDF 396
>gnl|CDD|238554 cd01134, V_A-ATPase_A, V/A-type ATP synthase catalytic subunit A.
These ATPases couple ATP hydrolysis to the build up of a
H+ gradient, but V-type ATPases do not catalyze the
reverse reaction. The Vacuolar (V-type) ATPase is found
in the membranes of vacuoles, the golgi apparatus and in
other coated vesicles in eukaryotes. Archaea have a
protein which is similar in sequence to V-ATPases, but
functions like an F-ATPase (called A-ATPase). A similar
protein is also found in a few bacteria.
Length = 369
Score = 69.2 bits (170), Expect = 2e-13
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 130 MENVCLFLNLANDPTIER---IITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREV 186
M+ L N +N P R I T +T AE+ +V ++ S +AEALRE+
Sbjct: 218 MKRTVLIANTSNMPVAAREASIYT---GITIAEYFRDM-GYNVALMADSTSRWAEALREI 273
Query: 187 SAAREEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIPILTMPNDDFK 238
S EE+PG G+P Y+ LA+ YERAGRV+ GR GS+T + ++ P DF
Sbjct: 274 SGRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIVGAVSPPGGDFS 330
Score = 48.0 bits (115), Expect = 3e-06
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 5/42 (11%)
Query: 244 EEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQI 280
EE+PG G+P Y+ LA+ YERAGRV+ GR GS+T +
Sbjct: 278 EEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIV 319
>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional.
Length = 1017
Score = 69.7 bits (170), Expect = 3e-13
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 130 MENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSS-YAEALREVSA 188
ME L N +N P R + +T AE+ ++ + + ++ D +S +AEALRE+S
Sbjct: 717 MERTVLIANTSNMPVAAREASIYTGITIAEY--FRDMGYDVALMADSTSRWAEALREISG 774
Query: 189 AREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMPNDDF 237
EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P DF
Sbjct: 775 RLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 828
Score = 44.2 bits (104), Expect = 5e-05
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRV-----EGRNGSITQIPILTMP 286
++S EE+PG G+P Y+ + LA YERAGRV + R GS++ I ++ P
Sbjct: 771 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPP 824
>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated.
Length = 440
Score = 68.7 bits (168), Expect = 5e-13
Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 22/208 (10%)
Query: 40 RDLIGD--SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD 97
R I ++G RAID + S GQ+I IF+AAG+ + + +C
Sbjct: 140 RQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLC--------------A 185
Query: 98 DSEDNFAIVFAAMGV-NMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALT 156
DS + +V A +G E F +Q V + + ++ P +ER+ A T
Sbjct: 186 DSAAD-VMVLALIGERGREVREFLEQVLTPEARARTV-VVVATSDRPALERLKGLSTATT 243
Query: 157 TAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGR 216
AE+ K VL++ ++ YA A RE+ A E P FP ++ NL + ER G
Sbjct: 244 IAEYFR-DRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGN 302
Query: 217 VEGRNGSITQIPILTMPNDDFKVSAARE 244
+ GSIT + + DD A E
Sbjct: 303 SD--RGSITAFYTVLVEGDDMNEPVADE 328
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 66.9 bits (164), Expect = 1e-12
Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 39/202 (19%)
Query: 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVL------DDS 99
+G RAID + ++ +GQ++ IF+ +G+ GKS L +
Sbjct: 54 PTGVRAIDGLLTVGKGQRLGIFAGSGV-------------------GKSTLLGMIARGTT 94
Query: 100 EDNFAIVFAAMGVNMETAR----FFKQDFEENGSMENVCLFLNLANDPTIERIITPRLAL 155
D V A +G E R F ++D E G +V + + +++ + R+ A
Sbjct: 95 AD--VNVIALIG---ERGREVREFIEKDLGEEGLKRSV-VVVATSDESPLLRVKAAYTAT 148
Query: 156 TTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAG 215
AE+ Q K VL+++ ++ +A A RE+ A E P +G+P ++ L + ERAG
Sbjct: 149 AIAEYFRDQ-GKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAG 207
Query: 216 RVEGRNGSITQI-PILTMPNDD 236
GSIT +L +D
Sbjct: 208 N--SDKGSITAFYTVLVEGDDL 227
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 67.2 bits (164), Expect = 1e-12
Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 17/199 (8%)
Query: 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAI 105
S+G R ID M ++ARGQ+I IF+ AG+ + + I R A ++++ N
Sbjct: 149 STGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA-----------EEADVNVIA 197
Query: 106 VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQC 165
+ G E F + D E G M+ + ++ ++ + R+ + AE+ Q
Sbjct: 198 LIGERG--REVREFIEGDLGEEG-MKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQ- 253
Query: 166 EKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSIT 225
K V++++ ++ +A ALREV A E P R G+ +++ L + ER+G + G+IT
Sbjct: 254 GKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGASD--KGTIT 311
Query: 226 QIPILTMPNDDFKVSAARE 244
+ + DD A E
Sbjct: 312 AFYTVLVAGDDMNEPVADE 330
>gnl|CDD|233245 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 591
Score = 67.5 bits (165), Expect = 1e-12
Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 24/179 (13%)
Query: 82 CRQAGLVKMPG-----KSVLDDSEDNF----AIVFAAMGVN----METARFFKQ-----D 123
C Q G +PG K+V+ S + AIV+ G E F + D
Sbjct: 223 CVQGGTTAIPGAFGCGKTVISQSLSKYSNSDAIVYVGCGERGNEMAEVLMDFPELTMEVD 282
Query: 124 FEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEAL 183
E M+ L N +N P R + +T AE+ +V ++ S +AEAL
Sbjct: 283 GREESIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDM-GYNVSMMADSTSRWAEAL 341
Query: 184 REVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE-----GRNGSITQIPILTMPNDDF 237
RE+S E+P G+P Y+ LA+ YERAGRV+ R GS++ + ++ P DF
Sbjct: 342 REISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGDF 400
>gnl|CDD|238552 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta and
epsilon subunits with a stoichiometry of 3:3:1:1:1. The
alpha subunit of the F1 ATP synthase can bind
nucleotides, but is non-catalytic.
Length = 274
Score = 65.7 bits (161), Expect = 2e-12
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 26/201 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G +AID M I RGQ+ I RQ G + ++++ +
Sbjct: 55 TGIKAIDAMIPIGRGQRELIIGD-------------RQTGKTAIAIDTIINQKGKKVYCI 101
Query: 107 FAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 166
+ A+G T + EE+G+ME + A+DP + + P E+
Sbjct: 102 YVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDN-G 160
Query: 167 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPG---YMYTNLATIYERAGRV--EGRN 221
KH L+I D+S A A R++S PGR +PG Y+++ L ERA ++ E
Sbjct: 161 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERAAKLNDELGG 217
Query: 222 GSITQIPIL-TMPNDDFKVSA 241
GS+T +PI+ T D VSA
Sbjct: 218 GSLTALPIIETQAGD---VSA 235
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 66.7 bits (163), Expect = 2e-12
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 20/200 (10%)
Query: 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAI 105
S G R ID + + GQ++ IF+AAG + + A + R A +
Sbjct: 147 SLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA---------------EVDVT 191
Query: 106 VFAAMGV-NMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQ 164
V A +G E F + D E G + L + ++ P++ER +A + AE+ Q
Sbjct: 192 VLALIGERGREVREFIESDLGEEG-LRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQ 250
Query: 165 CEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSI 224
K VL+++ ++ +A A RE+ A E P RRG+P ++ L + ERAG + GSI
Sbjct: 251 -GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAG--QSDKGSI 307
Query: 225 TQIPILTMPNDDFKVSAARE 244
T + + + DD A E
Sbjct: 308 TALYTVLVEGDDMTEPVADE 327
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 413
Score = 64.3 bits (157), Expect = 1e-11
Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 32/199 (16%)
Query: 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA-------GLVKMPGKSVLDD 98
+G +AID + +I +GQ++ IF+ +G+ + + I R A L+ G+ V D
Sbjct: 122 ETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRD- 180
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
F ++D E G +V + + ++ P + R+ A A
Sbjct: 181 --------------------FIEKDLGEEGLKRSV-VVVATSDQPALMRLKAAFTATAIA 219
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ Q K VL+++ ++ +A A RE+ A E P RG+ +++ L + ER+G +
Sbjct: 220 EYFRDQ-GKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNSQ 278
Query: 219 GRNGSITQIPILTMPNDDF 237
GSIT + + DD
Sbjct: 279 --KGSITGFYTVLVDGDDM 295
>gnl|CDD|235951 PRK07165, PRK07165, F0F1 ATP synthase subunit alpha; Validated.
Length = 507
Score = 64.6 bits (158), Expect = 1e-11
Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 51 AIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAM 110
AID++ I +GQ+ I RQ G + ++++ N ++ A+
Sbjct: 133 AIDLLIPIGKGQRELIIGD-------------RQTGKTHIALNTIINQKNTNVKCIYVAI 179
Query: 111 GVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVL 170
G E + +E+ +++N + + P E+ + P +A+ AE ++Y VL
Sbjct: 180 GQKRENLSRIYETLKEHDALKNTIIIDAPSTSP-YEQYLAPYVAMAHAENISY--NDDVL 236
Query: 171 VILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPIL 230
++ D++ +A RE++ + G+ FPG M+ + + ERAG+ + R +IT +PIL
Sbjct: 237 IVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFKNRK-TITALPIL 295
Query: 231 -TMPND 235
T+ ND
Sbjct: 296 QTVDND 301
>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated.
Length = 428
Score = 64.2 bits (157), Expect = 1e-11
Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 28/209 (13%)
Query: 35 RSFTPRDLIGDS--SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPG 92
S+ R I + +G RAID + + GQ++ IF++AG C + L+ M
Sbjct: 123 PSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAG----------CGKTSLMNM-- 170
Query: 93 KSVLDDSE-DNFAIVFAAMGVNMETARF---FKQDFEENGSMENVCLFLNLANDPTIERI 148
+++ SE D F I G+ E R F + + E L ++ +++R
Sbjct: 171 --LIEHSEADVFVI-----GLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223
Query: 149 ITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLA 208
+A T AE+ Q K V++ + M+ YA ALR+V+ A E+P RRG+P ++ +L
Sbjct: 224 NAALVATTVAEYFRDQ-GKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLP 282
Query: 209 TIYERAGRVEGRNGSITQIPILTMPNDDF 237
+ ER G GSIT + + +++
Sbjct: 283 RLLERPGAT--LAGSITAFYTVLLESEEE 309
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 62.5 bits (153), Expect = 5e-11
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 168 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE---GRNGSI 224
VL++ S +AEALRE+S EE+PG G+P Y+ + LA YERAGRV+ G GS+
Sbjct: 325 DVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEEGSV 384
Query: 225 TQI 227
T I
Sbjct: 385 TII 387
Score = 46.3 bits (111), Expect = 1e-05
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 244 EEVPGRRGFPGYMYTNLATIYERAGRVE---GRNGSITQI 280
EE+PG G+P Y+ + LA YERAGRV+ G GS+T I
Sbjct: 348 EEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEEGSVTII 387
>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit.
Length = 485
Score = 61.9 bits (151), Expect = 7e-11
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 26/197 (13%)
Query: 51 AIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAM 110
AID M I RGQ+ I RQ G + ++L+ N V+ A+
Sbjct: 131 AIDSMIPIGRGQRELIIGD-------------RQTGKTAVATDTILNQKGQNVICVYVAI 177
Query: 111 GVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVL 170
G + +E G+ME + A+ P + + P AE+ Y+ +H L
Sbjct: 178 GQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYR-GRHTL 236
Query: 171 VILTDMSSYAEALREVSAAREEVPGRRGFPG---YMYTNLATIYERAGRVEGR--NGSIT 225
+I D+S A+A R++S PGR +PG Y+++ L ERA ++ + GS+T
Sbjct: 237 IIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERAAKLSSQLGEGSMT 293
Query: 226 QIPIL-TMPNDDFKVSA 241
+PI+ T D VSA
Sbjct: 294 ALPIVETQAGD---VSA 307
>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins [Energy metabolism, ATP-proton
motive force interconversion].
Length = 440
Score = 61.2 bits (149), Expect = 1e-10
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 20/193 (10%)
Query: 46 SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAI 105
S+G R+ID + ++ +GQ+I IF+ +G+ + + I R +
Sbjct: 148 STGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARN---------------TEADVN 192
Query: 106 VFAAMGV-NMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQ 164
V A +G E F + D E G +V + + ++ + R+ +A AE+ Q
Sbjct: 193 VIALIGERGREVREFIEHDLGEEGLKRSV-VVVATSDQSPLLRLKGAYVATAIAEYFRDQ 251
Query: 165 CEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSI 224
K VL+++ ++ +A A RE+ A E P +G+ +++ L + ERAG GSI
Sbjct: 252 -GKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAG--ASGKGSI 308
Query: 225 TQIPILTMPNDDF 237
T + + DD
Sbjct: 309 TAFYTVLVEGDDM 321
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 60.7 bits (147), Expect = 2e-10
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 18/198 (9%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G RAID + + GQ++ IFSA G+ + + A +C D++ N ++
Sbjct: 141 TGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAP------------DADSNVLVL 188
Query: 107 FAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 166
G E F E + + + + ++ P +ER+ +A T AEF
Sbjct: 189 IGERG--REVREFIDFTLSEE-TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN-G 244
Query: 167 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQ 226
K V+++ ++ YA A RE++ A E +P +++ L + ER G G GSIT
Sbjct: 245 KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM--GEKGSITA 302
Query: 227 IPILTMPNDDFKVSAARE 244
+ + DD A E
Sbjct: 303 FYTVLVEGDDMNEPLADE 320
>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 60.8 bits (148), Expect = 2e-10
Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 31/188 (16%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAG-------LVKMPGKSVLDDS 99
+G R ID+ + GQ+I IF+ +G+ + + A + R LV G+ V +
Sbjct: 151 TGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFL 210
Query: 100 EDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE 159
ED + N++ A +E+ M R + P A AE
Sbjct: 211 ED-------TLADNLKKAVAVVATSDESPMM----------------RRLAPLTATAIAE 247
Query: 160 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG 219
+ + E VL+I+ ++ +A A REV+ A E P RG+P +++ L + ERAG
Sbjct: 248 YFRDRGEN-VLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAE 306
Query: 220 RNGSITQI 227
GSIT I
Sbjct: 307 GGGSITGI 314
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 59.2 bits (144), Expect = 6e-10
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 32/198 (16%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD---SEDNF- 103
G R ID + RGQ++ IF+ +G+ GKS L +
Sbjct: 127 GVRVIDTFLPLCRGQRLGIFAGSGV-------------------GKSTLLSMLARNTDAD 167
Query: 104 AIVFAAMGVNMETAR----FFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE 159
+V A +G E R F + D E G ++ + + +++ + R A AE
Sbjct: 168 VVVIALVG---ERGREVREFLEDDLGEEG-LKRSVVVVATSDESPLMRRQAAYTATAIAE 223
Query: 160 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG 219
+ Q + VL+++ ++ +A A RE+ A E P RG+ +++ L + ERAG
Sbjct: 224 YFRDQGKD-VLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAE 282
Query: 220 RNGSITQIPILTMPNDDF 237
GSIT I + + DD
Sbjct: 283 GKGSITGIFTVLVDGDDH 300
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 411
Score = 59.0 bits (144), Expect = 7e-10
Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 36/190 (18%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVL------DDSED 101
G RAI+ + ++ RGQ++ IF+ +G+ GKS L D
Sbjct: 124 GVRAINGLLTVGRGQRMGIFAGSGV-------------------GKSTLLGMMARYTEAD 164
Query: 102 NFAIVFAAMGVNMETAR----FFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTT 157
+V +G E R F + E G + + A++ + R+ A
Sbjct: 165 --VVVVGLIG---ERGREVKEFIEDILGEEG-LARSVVVAATADESPLMRLRAAFYATAI 218
Query: 158 AEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRV 217
AE+ Q K VL+++ ++ +A A RE++ A E P +G+P ++ L + ERAG
Sbjct: 219 AEYFRDQ-GKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNG 277
Query: 218 EGRNGSITQI 227
E GSIT
Sbjct: 278 EEGKGSITAF 287
Score = 32.8 bits (76), Expect = 0.21
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 241 AARE------EVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQI 280
A RE E P +G+P ++ L + ERAG E GSIT
Sbjct: 242 AQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEEGKGSITAF 287
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 57.6 bits (139), Expect = 2e-09
Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 19/189 (10%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G +AID ++ +GQ+I +FS G + + + I + + KS ++ V
Sbjct: 143 TGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS-------KSTIN--------V 187
Query: 107 FAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 166
A +G R + + +E + + + + A++ ++I R A+T AE+ Q
Sbjct: 188 IALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGH 247
Query: 167 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQ 226
+ VL I+ +S + AL+EV+ AR E + ++ +++ ERAG + GSIT
Sbjct: 248 R-VLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNND--KGSITA 304
Query: 227 I-PILTMPN 234
+ IL PN
Sbjct: 305 LYAILHYPN 313
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 56.4 bits (136), Expect = 5e-09
Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 28/203 (13%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD-------S 99
+G +AIDV+ + RG K +F AG+ GK+VL
Sbjct: 124 TGIKAIDVLVPLERGGKAGLFGGAGV-------------------GKTVLLTEMIHNMVG 164
Query: 100 EDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE 159
+ +F +G ++ +E G ++N + N+P R ALT AE
Sbjct: 165 QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAE 224
Query: 160 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG 219
+ ++ VL+++ ++ + +A EVS ++P R G+ + T LA + ER
Sbjct: 225 YFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATT-- 282
Query: 220 RNGSITQIPILTMPNDDFKVSAA 242
+G+IT I + +P DDF AA
Sbjct: 283 SDGAITSIQAVYVPADDFTDPAA 305
>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha.
A small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, and in principle may run in either direction. This
model represents the F1 alpha subunit of this apparent
second ATP synthase.
Length = 497
Score = 56.3 bits (136), Expect = 5e-09
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 16/186 (8%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + ID + I RGQ+ I RQ G + ++L+ N +
Sbjct: 148 TGLKVIDALIPIGRGQRELILGD-------------RQTGKTAIAIDTILNQKGRNVLCI 194
Query: 107 FAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 166
+ A+G + E+G+M+ + + NDP + I P A + E Q
Sbjct: 195 YCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQ-G 253
Query: 167 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAG--RVEGRNGSI 224
+ VL++ D++ +A A RE+S PGR FPG ++ + + ER+ E GS+
Sbjct: 254 RDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSL 313
Query: 225 TQIPIL 230
T +PI+
Sbjct: 314 TALPII 319
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 55.4 bits (133), Expect = 1e-08
Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 33/198 (16%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQA-------GLVKMPGKSVLDDS 99
+G ++ID M +I GQKI IF+ +G+ + + I + A LV G+ V D
Sbjct: 142 TGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKD-- 199
Query: 100 EDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE 159
F +++ E G M + + +++ + ++ +LA + AE
Sbjct: 200 -------------------FIRKELGEEG-MRKSVVVVATSDESHLMQLRAAKLATSIAE 239
Query: 160 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG 219
+ Q +VL+++ ++ +A+A R V A +E+P G M + + + ER+G+ +
Sbjct: 240 YFRDQ-GNNVLLMMDSVTRFADARRSVDIAVKELP-IGGKTLLMESYMKKLLERSGKTQ- 296
Query: 220 RNGSITQIPILTMPNDDF 237
GSIT I + + DD
Sbjct: 297 -KGSITGIYTVLVDGDDL 313
>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 55.1 bits (134), Expect = 1e-08
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 125 EENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALR 184
EE+G+ME + A+DP + + P E+ K L++ D+S A A R
Sbjct: 213 EEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNG-KDALIVYDDLSKQAVAYR 271
Query: 185 EVSAAREEVPGRRGFPG---YMYTNLATIYERAGRV--EGRNGSITQIPIL-TMPNDDFK 238
++S PGR +PG Y+++ L ERA ++ E GS+T +PI+ T D
Sbjct: 272 QLSLLLRRPPGREAYPGDVFYLHSRL---LERAAKLSDELGGGSLTALPIIETQAGD--- 325
Query: 239 VSA 241
VSA
Sbjct: 326 VSA 328
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 54.9 bits (133), Expect = 1e-08
Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 16/185 (8%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G + +D + I RGQ+ I RQ G + ++++ + + V
Sbjct: 148 TGIKVVDALIPIGRGQRELIIGD-------------RQTGKTAIAIDAIINQKDSDVICV 194
Query: 107 FAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 166
+ A+G + E+G++E + + A+DP + + P AE+ Q
Sbjct: 195 YVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDQ-G 253
Query: 167 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRN--GSI 224
+ L++ D+S +A A RE+S PGR +PG ++ + + ERA ++ GS+
Sbjct: 254 QDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSPELGGGSL 313
Query: 225 TQIPI 229
T +PI
Sbjct: 314 TALPI 318
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.
Length = 461
Score = 54.5 bits (132), Expect = 2e-08
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 30/198 (15%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAI-- 105
G + ID++ IA+G K +F AG+ GK+VL E F I
Sbjct: 130 GIKVIDLLCPIAKGGKTGLFGGAGV-------------------GKTVLM-MELIFNISK 169
Query: 106 ------VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE 159
VFA +G + +E+G ++ + N+P R+ LT AE
Sbjct: 170 QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAE 229
Query: 160 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG 219
+L + ++ VL+ + ++ + +A EVS +P R G+ + + +A + ER +
Sbjct: 230 YLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIASTK- 288
Query: 220 RNGSITQIPILTMPNDDF 237
NGSIT I + +P DD
Sbjct: 289 -NGSITSIQAVYVPADDL 305
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 53.2 bits (128), Expect = 5e-08
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 18/179 (10%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIV 106
+G R +D + ++ GQ++ IF+ AG+ + + R + N +
Sbjct: 149 TGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGT------------QCDVNVIAL 196
Query: 107 FAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 166
G E F + E+G M + ++ +IER +A AE+ +
Sbjct: 197 IGERG--REVREFIELILGEDG-MARSVVVCATSDRSSIERAKAAYVATAIAEYFRDR-G 252
Query: 167 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSIT 225
VL+++ ++ +A A RE+ A E P RRGFP ++ L + ERAG G GSIT
Sbjct: 253 LRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGM--GETGSIT 309
Score = 35.1 bits (81), Expect = 0.041
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 242 AREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSIT 278
A E P RRGFP ++ L + ERAG G GSIT
Sbjct: 275 AAGEPPARRGFPPSVFAELPRLLERAGM--GETGSIT 309
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
Length = 451
Score = 52.4 bits (126), Expect = 9e-08
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFA--- 104
G R+I+ + ++ RGQ++ +F+ G+ GKSVL F
Sbjct: 155 GIRSINGLLTVGRGQRLGLFAGTGV-------------------GKSVLLGMMTRFTEAD 195
Query: 105 -IVFAAMGV-NMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLA 162
IV +G E F + E G +V + + A+D + R+ AE+
Sbjct: 196 IIVVGLIGERGREVKEFIEHILGEEGLKRSVVV-ASPADDAPLMRLRAAMYCTRIAEYFR 254
Query: 163 YQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNG 222
+ K+VL+++ ++ +A+A RE++ A E P +G+P ++ L + ERAG E G
Sbjct: 255 DK-GKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGG 313
Query: 223 SIT 225
SIT
Sbjct: 314 SIT 316
Score = 29.3 bits (66), Expect = 2.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSIT 278
+++ A E P +G+P ++ L + ERAG E GSIT
Sbjct: 276 EIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSIT 316
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 52.4 bits (125), Expect = 1e-07
Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 25/200 (12%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAI- 105
+G +A+D M I RGQ+ I RQ G + ++++ N I
Sbjct: 175 TGFKAVDTMIPIGRGQRELIVGD-------------RQTGKTSIAVSTIINQVRINQQIL 221
Query: 106 -------VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
++ ++G + G++ + A +P + + P +T
Sbjct: 222 SKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMG 281
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+ + +H L + D+S A A R++S PGR +PG ++ + + ERA +
Sbjct: 282 EYFMNR-GRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLS 340
Query: 219 -GR-NGSITQIPIL-TMPND 235
G+ GS+T +PI+ T+ ND
Sbjct: 341 PGKGGGSVTALPIVETLSND 360
Score = 33.1 bits (75), Expect = 0.19
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 247 PGRRGFPGYMYTNLATIYERAGRVE-GR-NGSITQIPIL-TMPNDVGASI 293
PGR +PG ++ + + ERA + G+ GS+T +PI+ T+ NDV A I
Sbjct: 316 PGREAYPGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVETLSNDVTAYI 365
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 52.0 bits (125), Expect = 1e-07
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 24/190 (12%)
Query: 40 RDLIGD--SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD 97
R LI + S G ++ID + + +GQK+ IF+ +G+ + + I + P K
Sbjct: 134 RGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC---LAPIK---- 186
Query: 98 DSEDNFAIVFAAMGVNMETARFFKQDFEEN--GSMENVCLFLNLANDPTIERIITPRLAL 155
V A +G E R + E+N G +EN + + ++D + R A+
Sbjct: 187 --------VVALIG---ERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGAFCAM 235
Query: 156 TTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAG 215
+ AE+ Q VL I+ ++ +A A RE+ A E P +G+P + + L + ERAG
Sbjct: 236 SVAEYFKNQ-GLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAG 294
Query: 216 RVEGRNGSIT 225
+ EG+ GSIT
Sbjct: 295 KEEGK-GSIT 303
Score = 30.0 bits (68), Expect = 1.5
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 241 AARE------EVPGRRGFPGYMYTNLATIYERAGRVEGRNGSIT 278
A RE E P +G+P + + L + ERAG+ EG+ GSIT
Sbjct: 261 AQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEGK-GSIT 303
>gnl|CDD|238553 cd01133, F1-ATPase_beta, F1 ATP synthase beta subunit,
nucleotide-binding domain. The F-ATPase is found in
bacterial plasma membranes, mitochondrial inner
membranes and in chloroplast thylakoid membranes. It has
also been found in the archaea Methanosarcina barkeri.
It uses a proton gradient to drive ATP synthesis and
hydrolyzes ATP to build the proton gradient. The
extrinisic membrane domain, F1, is composed of alpha,
beta, gamma, delta and epsilon subunits with a
stoichiometry of 3:3:1:1:1. The beta subunit of ATP
synthase is catalytic.
Length = 274
Score = 49.9 bits (120), Expect = 4e-07
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 28/198 (14%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVL-DDSEDNFAI 105
+G + ID++ A+G KI +F AG+ GK+VL + +N A
Sbjct: 55 TGIKVIDLLAPYAKGGKIGLFGGAGV-------------------GKTVLIMELINNIAK 95
Query: 106 ------VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE 159
VFA +G + +E+G + L N+P R LT AE
Sbjct: 96 AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAE 155
Query: 160 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG 219
+ + + VL+ + ++ + +A EVSA +P G+ + T + + ER
Sbjct: 156 YFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITST-- 213
Query: 220 RNGSITQIPILTMPNDDF 237
+ GSIT + + +P DD
Sbjct: 214 KKGSITSVQAVYVPADDL 231
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 49.4 bits (118), Expect = 1e-06
Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 40/201 (19%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFA--- 104
G RAI+ + ++ RGQ++ +F+ +G+ GKSVL +
Sbjct: 162 GVRAINALLTVGRGQRMGLFAGSGV-------------------GKSVLLGMMARYTQAD 202
Query: 105 -IVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERI--ITPRLALTTAEFL 161
IV +G E R K DF +EN+ A I ++P L + A +
Sbjct: 203 VIVVGLIG---ERGREVK-DF-----IENILGAEGRARSVVIAAPADVSPLLRMQGAAYA 253
Query: 162 AYQCE------KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAG 215
E +HVL+I+ ++ YA A RE++ A E P +G+P ++ L + ERAG
Sbjct: 254 TRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAG 313
Query: 216 RVEGRNGSITQIPILTMPNDD 236
GSIT + DD
Sbjct: 314 NGISGGGSITAFYTVLTEGDD 334
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
Length = 444
Score = 46.2 bits (110), Expect = 9e-06
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 36/188 (19%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVL------DDSED 101
G RAI+ M ++ +GQ++ +F+ +G+ GKSVL + D
Sbjct: 149 GVRAINAMLTVGKGQRMGLFAGSGV-------------------GKSVLLGMMTRGTTAD 189
Query: 102 NFAIVFAAMGVNMETARFFKQDFEE----NGSMENVCLFLNLANDPTIERIITPRLALTT 157
IV +G E R K+ EE G +V + P + R+ A T
Sbjct: 190 --VIVVGLVG---ERGREVKEFIEEILGEEGRARSVVVAAPADTSPLM-RLKGCETATTI 243
Query: 158 AEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRV 217
AE+ Q VL+++ ++ YA+A RE++ A E P +G+P ++ L + ERAG
Sbjct: 244 AEYFRDQGLN-VLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNG 302
Query: 218 EGRNGSIT 225
GSIT
Sbjct: 303 GPGQGSIT 310
Score = 28.5 bits (64), Expect = 4.9
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 241 AARE------EVPGRRGFPGYMYTNLATIYERAGRVEGRNGSIT 278
A RE E P +G+P ++ L + ERAG GSIT
Sbjct: 267 AQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSIT 310
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 44.9 bits (106), Expect = 3e-05
Identities = 42/190 (22%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVF 107
G AI+ + +I +GQ++ + + +G+ + + I R ++ + +V
Sbjct: 142 GVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRY--------------TQADVVVVG 187
Query: 108 AAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 167
E F + + G ++V + A++ + RI L A + Y+ +
Sbjct: 188 LIGERGREVKEFIEHSLQAAGMAKSV-VVAAPADESPLMRIKATELCHAIATY--YRDKG 244
Query: 168 H-VLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQ 226
H VL+++ ++ YA A RE++ + E P +G+P ++ + + E AG G NG++T
Sbjct: 245 HDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSG-NGTMTA 303
Query: 227 IPILTMPNDD 236
I + DD
Sbjct: 304 IYTVLAEGDD 313
>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at the
C-terminus. The beta chain has catalytic activity, while
the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 461
Score = 44.3 bits (105), Expect = 4e-05
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 28/198 (14%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVL-DDSEDNFAI 105
+G + ID++ A+G KI +F AG+ GK+VL + +N A
Sbjct: 129 TGIKVIDLLAPYAKGGKIGLFGGAGV-------------------GKTVLIQELINNIAK 169
Query: 106 ------VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE 159
VFA +G + +E+G ++ L N+P R+ LT AE
Sbjct: 170 EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAE 229
Query: 160 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG 219
+ + + VL+ + ++ + +A EVSA +P G+ + T + + ER
Sbjct: 230 YFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERI--TST 287
Query: 220 RNGSITQIPILTMPNDDF 237
+ GSIT + + +P DD
Sbjct: 288 KTGSITSVQAVYVPADDL 305
>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy
production and conversion].
Length = 468
Score = 43.8 bits (104), Expect = 6e-05
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 28/197 (14%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVL-DDSEDNFAI- 105
G + ID++ A+G KI +F AG+ GK+VL + +N A
Sbjct: 134 GIKVIDLLAPYAKGGKIGLFGGAGV-------------------GKTVLIQELINNIAKE 174
Query: 106 -----VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEF 160
VFA +G + +E+G ++ L N+P R+ LT AE+
Sbjct: 175 HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEY 234
Query: 161 LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGR 220
+ + VL+ + ++ + +A EVSA +P G+ + T + + ER +
Sbjct: 235 FRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST--K 292
Query: 221 NGSITQIPILTMPNDDF 237
GSIT + + +P DD
Sbjct: 293 KGSITSVQAVYVPADDL 309
>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
Length = 442
Score = 43.4 bits (103), Expect = 8e-05
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 32/188 (17%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVL----DDSEDNF 103
G RA++ + RGQ++ IF+ +G+ GKSVL + D
Sbjct: 145 GVRALNTFLTCCRGQRMGIFAGSGV-------------------GKSVLLSMLARNADAD 185
Query: 104 AIVFAAMGVNMETAR----FFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE 159
V +G E R F + D G +V + + +++P + R L L AE
Sbjct: 186 VSVIGLIG---ERGREVQEFLQDDLGPEGLARSV-VVVATSDEPALMRRQAAYLTLAIAE 241
Query: 160 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG 219
+ Q K VL ++ ++ +A A RE+ + E P +G+ ++ L + ERAG
Sbjct: 242 YFRDQ-GKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGPI 300
Query: 220 RNGSITQI 227
G+IT +
Sbjct: 301 GEGTITGL 308
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 41.2 bits (97), Expect = 4e-04
Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVF 107
G RAID + ++ +GQ++ IF+ +G+ + + I R ++ N V
Sbjct: 145 GVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT------------SADLN---VI 189
Query: 108 AAMGV-NMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 166
A +G E F ++D G ++ + + ++ P + RI A AE+ Q
Sbjct: 190 ALIGERGREVREFIERDLGPEGLKRSI-VVVATSDQPALMRIKGAYTATAIAEYFRDQ-G 247
Query: 167 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSIT 225
+V++++ ++ A A RE+ A E P +G+ ++ L + ER G +GSIT
Sbjct: 248 LNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNA--SGSIT 304
>gnl|CDD|215848 pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta chain, C
terminal domain.
Length = 110
Score = 35.7 bits (83), Expect = 0.005
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERSFTPRDLIG-DSSGKRAIDVMNSIA 59
+ +VGE+AL+ +D L LE + E+ F+ Q ++P + + ID+ ++
Sbjct: 20 IVQLVGEDALSEEDKLTLERARRIEE-FLKQN---QYSPEPVEKQYVPVEETIDLFYALL 75
Query: 60 RG 61
RG
Sbjct: 76 RG 77
>gnl|CDD|214349 CHL00060, atpB, ATP synthase CF1 beta subunit.
Length = 494
Score = 32.7 bits (75), Expect = 0.19
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 125 EENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALR 184
E+N + V L N+P R+ ALT AE+ ++ VL+ + ++ + +A
Sbjct: 220 EQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGS 279
Query: 185 EVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDD 236
EVSA +P G+ + T + ++ ER + GSIT I + +P DD
Sbjct: 280 EVSALLGRMPSAVGYQPTLSTEMGSLQERITST--KEGSITSIQAVYVPADD 329
>gnl|CDD|222897 PHA02593, 62, clamp loader small subunit; Provisional.
Length = 191
Score = 31.2 bits (71), Expect = 0.45
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 89 KMPGK--SVLDDSEDNF--AIVFAAMGVNMETARFFKQDFEENGSMENV 133
K GK + +DSE+ ++ A VN + AR + ++ G + +V
Sbjct: 110 KRYGKWAKLTEDSEEKLIIKLLAKAYSVNTDDAREYLDILKKKGKLPDV 158
>gnl|CDD|215555 PLN03063, PLN03063, alpha,alpha-trehalose-phosphate synthase
(UDP-forming); Provisional.
Length = 797
Score = 31.0 bits (70), Expect = 0.81
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 238 KVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPI 282
KV + VP R P Y + ++E GR+ GR GS++ +PI
Sbjct: 314 KVMLVQIAVPTRNDVPEYQKLK-SQVHELVGRINGRFGSVSSVPI 357
Score = 30.6 bits (69), Expect = 1.0
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 193 VPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPI 229
VP R P Y + ++E GR+ GR GS++ +PI
Sbjct: 322 VPTRNDVPEYQKLK-SQVHELVGRINGRFGSVSSVPI 357
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 30.1 bits (68), Expect = 1.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 26 KNFVSQEGERSFTPRDLIGDSSGKRAIDVMNSIARGQKI 64
++++ EG + PR L+ G A+D+ S+AR QK+
Sbjct: 405 RDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKM 443
>gnl|CDD|241333 cd13179, RanBD_RanBP1, Ran-binding domain. RanBP1 interacts
specifically with GTP-charged Ran. RanBP1 does not
activate GTPase activity of Ran, but does markedly
increase GTP hydrolysis by the RanGTPase-activating
protein (RanGAP1). In both mammalian cells and in yeast,
RanBP1 acts as a negative regulator of Regulator of
chromosome condensation 1 (RCC1) by inhibiting
RCC1-stimulated guanine nucleotide release from Ran. In
addition to Ran, RanBP1 has been shown to interact with
Exportin-1 and Importin subunit beta-1 which docks the
NPC at the cytoplasmic side of the nuclear pore complex.
RabBP1 contains a single RanBD. The RanBD is present in
RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these
proteins have a single RanBD, with the exception of
RanBD2 which has 4 RanBDs. Ran is a Ras-like nuclear
small GTPase, which regulates receptor-mediated
transport between the nucleus and the cytoplasm. RanGTP
hydrolysis is stimulated by RanGAP together with the
Ran-binding domain containing acessory proteins RanBP1
and RanBP2. These accessory proteins stabilize the
active GTP-bound form of Ran. The Ran-binding domain is
found in multiple copies in Nuclear pore complex
proteins. RabBD shares structural similarity to the PH
domain, but lacks detectable sequence similarity.
Length = 126
Score = 28.0 bits (63), Expect = 2.9
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 10/39 (25%)
Query: 94 SVLDDSEDN------FAIVFAAMGVNMETARFFKQDFEE 126
+ D D AI FA N E A+ FK FEE
Sbjct: 89 NTPADFADEEPKPELLAIRFA----NAENAQKFKTKFEE 123
>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat.
Length = 78
Score = 26.9 bits (60), Expect = 4.0
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 172 ILTDMSSYAEAL---REVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
+L + Y EAL + E+ NLA +Y G +
Sbjct: 14 VLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYD 63
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 28.8 bits (65), Expect = 4.3
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 21/66 (31%)
Query: 147 RIITPRLALTTAEFLAYQCEKHV-LVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYT 205
RI T RL + F + ++ T MS+ LR +PGYM
Sbjct: 210 RIATDRLHIQNPTFD------QINSLVSTVMSASTTTLR--------------YPGYMNN 249
Query: 206 NLATIY 211
+L ++
Sbjct: 250 DLISLI 255
>gnl|CDD|220777 pfam10486, PI3K_1B_p101, Phosphoinositide 3-kinase gamma adapter
protein p101 subunit. Class I PI3Ks are dual-specific
lipid and protein kinases involved in numerous
intracellular signaling pathways. Class IB PI3K,
p110gamma, is mainly activated by seven-transmembrane
G-protein-coupled receptors (GPCRs), through its
regulatory subunit p101 and G-protein beta-gamma
subunits.
Length = 856
Score = 28.4 bits (63), Expect = 5.1
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 177 SSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG-----RNGSITQIPI 229
++ AEA + ++A + P R G + L I E AG G R I IPI
Sbjct: 226 TAVAEAQEQAASADDASPAREG----LVEKLEEIGEAAGLCPGDLGQARPPRIQPIPI 279
>gnl|CDD|166901 PRK00304, PRK00304, hypothetical protein; Provisional.
Length = 75
Score = 26.3 bits (58), Expect = 5.5
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 10 LTPDDLLYLEFLTKFEKNFVSQEGERSF--TPRDLIGDSSGKRAIDVMNSIARGQKIPIF 67
L P D L + LT+ ++FV+++G + TP + R + V ++ +GQ + +F
Sbjct: 2 LIPYDQLEADTLTRLIEDFVTRDGTDNGDETPLE-------TRVLRVRQALTKGQAVILF 54
>gnl|CDD|215556 PLN03064, PLN03064, alpha,alpha-trehalose-phosphate synthase
(UDP-forming); Provisional.
Length = 934
Score = 28.6 bits (64), Expect = 5.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 193 VPGRRGFPGYMYTNLAT-IYERAGRVEGRNGSITQIPI 229
VP R P Y L + ++E GR+ GR G++T +PI
Sbjct: 406 VPTRTDVPEYQ--KLTSQVHEIVGRINGRFGTLTAVPI 441
Score = 28.6 bits (64), Expect = 5.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 246 VPGRRGFPGYMYTNLAT-IYERAGRVEGRNGSITQIPI 282
VP R P Y L + ++E GR+ GR G++T +PI
Sbjct: 406 VPTRTDVPEYQ--KLTSQVHEIVGRINGRFGTLTAVPI 441
>gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is
an aminohydrolase responsible for the conversion of
guanine to xanthine and ammonia, the first step to
utilize guanine as a nitrogen source. This reaction also
removes the guanine base from the pool and therefore can
play a role in the regulation of cellular GTP and the
guanylate nucleotide pool.
Length = 429
Score = 28.0 bits (63), Expect = 6.1
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 148 IITPRLALTTAEFLAYQC-----EKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGY 202
ITPR A + +E L E L I T +S E L E++ +E PG R +
Sbjct: 196 AITPRFAPSCSEELLAALGKLAKEHPDLHIQTHIS---ENLDEIAWVKELFPGARDY--- 249
Query: 203 MYTNLATIYERAG 215
+Y++ G
Sbjct: 250 -----LDVYDKYG 257
>gnl|CDD|221056 pfam11277, Med24_N, Mediator complex subunit 24 N-terminal. This
subunit of the Mediator complex appears to be conserved
only from insects to humans. It is essential for correct
retinal development in fish. Subunit composition of the
mediator contributes to the control of differentiation
in the vertebrate CNS as there are divergent functions
of the mediator subunits Crsp34/Med27, Trap100/Med24,
and Crsp150/Med14.
Length = 991
Score = 27.9 bits (62), Expect = 8.2
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 122 QDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAE 181
QD + S + V F L D + + + EFL +C K L+ ++ A
Sbjct: 331 QDPPADYSEDVVEAFELLLQDTPLLDKMDQKCNCNCVEFLLQECNKLGLLSEVNVKKLA- 389
Query: 182 ALREVSAAR 190
A RE + R
Sbjct: 390 AKREAATPR 398
>gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate
reductase/S1 RNA-binding domain protein; Reviewed.
Length = 647
Score = 27.6 bits (62), Expect = 8.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 49 KRAIDVMNSIARGQKIPIFSAAGLPHN 75
KRA+D A K I++ L HN
Sbjct: 16 KRAVDTAIKTAEELKGKIYTLGPLIHN 42
>gnl|CDD|216314 pfam01128, IspD, Uncharacterized protein family UPF0007.
Length = 221
Score = 27.0 bits (60), Expect = 9.4
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 135 LFLNLANDPTIERIITPRLALTTAEFLAY-QCEKHVLVILTDMSSYAEAL 183
FL L P +E T FLA ++ V+ + D + L
Sbjct: 21 QFLQLLGQPLLEH--------TVDAFLASPVVDRIVVAVSPDDTPEFRQL 62
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.387
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,375,376
Number of extensions: 1511174
Number of successful extensions: 1299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1242
Number of HSP's successfully gapped: 121
Length of query: 293
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 197
Effective length of database: 6,679,618
Effective search space: 1315884746
Effective search space used: 1315884746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)