RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5595
(293 letters)
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 316 bits (812), Expect = e-106
Identities = 122/200 (61%), Positives = 154/200 (77%), Gaps = 4/200 (2%)
Query: 38 TPRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD 97
P I +G IDVMN++ RGQK+PIFS +GLP NEIAAQI RQA + P S
Sbjct: 126 KPEQFI--QTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVR--PDLSGEG 181
Query: 98 DSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTT 157
+ E+ FA+VFAAMG+ +F Q+FE G++ LFLN A+DPTIERI+TPR+ALT
Sbjct: 182 EKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTV 241
Query: 158 AEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRV 217
AE+LA++ + HVLVILTDM++Y+EALRE+ AAREE+PGRRG+PGYMYT+LATIYERAG V
Sbjct: 242 AEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVV 301
Query: 218 EGRNGSITQIPILTMPNDDF 237
EG+ GS+TQIPIL+MP+DD
Sbjct: 302 EGKKGSVTQIPILSMPDDDR 321
Score = 37.0 bits (86), Expect = 0.006
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQEGERS 36
+ A++GE+ALT +D YL+F FE+ F++Q +
Sbjct: 395 LVAIIGEDALTENDRRYLQFADAFERFFINQGQQNR 430
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 315 bits (809), Expect = e-106
Identities = 120/199 (60%), Positives = 152/199 (76%), Gaps = 11/199 (5%)
Query: 39 PRDLIGDSSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDD 98
P+D I +G ID N++ RGQK+PIFSA+GLPHNEIA QI RQA +
Sbjct: 132 PKDFI--QTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASV---------PG 180
Query: 99 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTA 158
SE FA+VFAAMG+ E A++F DFE+ G++E +FLNLA+DP +ERI+TPR+ALT A
Sbjct: 181 SESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAA 240
Query: 159 EFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVE 218
E+LAY+ HVLVILTD+++YAEALR++ AAR EVPGRRG+PGYMYT+LAT+YERAG V+
Sbjct: 241 EYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVK 300
Query: 219 GRNGSITQIPILTMPNDDF 237
G GS+TQIPIL+MP DD
Sbjct: 301 GAKGSVTQIPILSMPGDDI 319
Score = 35.0 bits (81), Expect = 0.028
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1 MKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 31
+ A+VG+EAL+ D +LEF FE FV Q
Sbjct: 393 LVAIVGKEALSERDTKFLEFADLFEDKFVRQ 423
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 94.0 bits (234), Expect = 1e-21
Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 34/205 (16%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFA--- 104
G R +DV+ +A G I G GKSV S ++
Sbjct: 208 GMRILDVLFPVAMGGTAAIPGPFGS-------------------GKSVTQQSLAKWSNAD 248
Query: 105 -IVFAAMG-----VNMETARFFKQDFEENGS--MENVCLFLNLANDPTIERIITPRLALT 156
+V+ G + F + + G M L N +N P R + + +T
Sbjct: 249 VVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVT 308
Query: 157 TAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGR 216
AE+ Q V ++ S +AEALRE+S+ EE+P G+P Y+ LA YERAG+
Sbjct: 309 IAEYFRDQ-GFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGK 367
Query: 217 VE---GRNGSITQIPILTMPNDDFK 238
V G G++T + ++ P D
Sbjct: 368 VITLGGEEGAVTIVGAVSPPGGDMS 392
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 88.6 bits (220), Expect = 7e-20
Identities = 58/209 (27%), Positives = 87/209 (41%), Gaps = 38/209 (18%)
Query: 47 SGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFA-- 104
+G+R ID A+G I AG GK+V ++
Sbjct: 213 TGQRVIDTFFPQAKGGTAAIPGPAGS-------------------GKTVTQHQLAKWSDA 253
Query: 105 --IVFAAMG-----VNMETARFFKQDFEENGS--MENVCLFLNLANDPTIERIITPRLAL 155
+++ G + F K + G ME L N +N P R + +
Sbjct: 254 QVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGI 313
Query: 156 TTAEFLAYQCE-KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERA 214
T AE+ ++ V ++ S +AEALRE+S EE+PG G+P Y+ + LA YERA
Sbjct: 314 TIAEY--FRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERA 371
Query: 215 GRVE-----GRNGSITQIPILTMPNDDFK 238
GRV R GS++ I ++ P DF
Sbjct: 372 GRVVTLGSDYRVGSVSVIGAVSPPGGDFS 400
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 81.2 bits (201), Expect = 1e-17
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 38/200 (19%)
Query: 40 RDLIGD--SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVL- 96
R I +G RAI+ + ++ RGQ++ +F+ +G+ GKSVL
Sbjct: 134 RTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGV-------------------GKSVLL 174
Query: 97 -----DDSEDNFAIVFAAMGVNMETAR----FFKQDFEENGSMENVCLFLNLANDPTIER 147
D IV +G E R F + +G + A+ + R
Sbjct: 175 GMMARYTRAD--VIVVGLIG---ERGREVKDFIENILGPDG-RARSVVIAAPADVSPLLR 228
Query: 148 IITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNL 207
+ A AE + +HVL+I+ ++ YA A RE++ A E P +G+P ++ L
Sbjct: 229 MQGAAYATRIAEDFRDR-GQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL 287
Query: 208 ATIYERAGRVEGRNGSITQI 227
+ ERAG GSIT
Sbjct: 288 PALVERAGNGIHGGGSITAF 307
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 78.5 bits (194), Expect = 7e-17
Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 40 RDLIGD--SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVL- 96
R +I G RAID + + GQ+I IF+ +G+ GKS L
Sbjct: 48 RQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGV-------------------GKSTLL 88
Query: 97 -----DDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITP 151
S D IV A +G F ++ + L + ++ P +ER+
Sbjct: 89 GMICNGASAD--IIVLALIGERGREVNEFLALLPQST-LSKCVLVVTTSDRPALERMKAA 145
Query: 152 RLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIY 211
A T AE+ Q K+VL+++ ++ YA A R+V A E R GFP ++++L +
Sbjct: 146 FTATTIAEYFRDQ-GKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLL 204
Query: 212 ERAGRVEGRNGSITQI 227
ERAG GSIT I
Sbjct: 205 ERAGP--APKGSITAI 218
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 61.2 bits (149), Expect = 8e-11
Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 26/200 (13%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVF 107
G AID M + RGQ+ I RQ G + ++L+ N V+
Sbjct: 150 GLIAIDAMIPVGRGQRELIIGD-------------RQTGKTAVATDTILNQQGQNVICVY 196
Query: 108 AAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 167
A+G + +F+E G+ME + A+ P + + P AE+ Y+ E+
Sbjct: 197 VAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYR-ER 255
Query: 168 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPG---YMYTNLATIYERAGRVEGRN--G 222
H L+I D+S A+A R++S PGR +PG Y+++ L ERA ++ G
Sbjct: 256 HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERAAKLSSLLGEG 312
Query: 223 SITQIPIL-TMPNDDFKVSA 241
S+T +PI+ T D VSA
Sbjct: 313 SMTALPIVETQAGD---VSA 329
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 60.8 bits (148), Expect = 1e-10
Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 26/200 (13%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVF 107
G +AID M I RGQ+ I RQ G + ++++ ++
Sbjct: 162 GIKAIDSMIPIGRGQRELIIGD-------------RQTGKTAIAIDTIINQKGQGVYCIY 208
Query: 108 AAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 167
A+G + G+ME + + A+DP + I P E+ AY +
Sbjct: 209 VAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAMGEYFAYS-GR 267
Query: 168 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPG---YMYTNLATIYERAGRV--EGRNG 222
LV+ D+S +A A R++S PGR +PG Y+++ L ERA R+ + G
Sbjct: 268 DALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRL---LERAVRLNDKLGGG 324
Query: 223 SITQIPIL-TMPNDDFKVSA 241
S+T +PI+ T ND +SA
Sbjct: 325 SLTALPIVETQAND---ISA 341
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 60.8 bits (148), Expect = 1e-10
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 26/200 (13%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVF 107
G +AID M I RGQ+ I RQ G + ++++ + ++
Sbjct: 149 GIKAIDSMIPIGRGQRELIIGD-------------RQTGKTTIAIDTIINQKGQDVICIY 195
Query: 108 AAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 167
A+G T + ++ +++ + A++P + P E+ Y+ K
Sbjct: 196 VAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYK-GK 254
Query: 168 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPG---YMYTNLATIYERAGRVEGRN--G 222
H LV+ D+S A A RE+S PGR +PG Y+++ L ERA ++ G
Sbjct: 255 HALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRL---LERAAKLSDEKGGG 311
Query: 223 SITQIPIL-TMPNDDFKVSA 241
S+T +P + T D VSA
Sbjct: 312 SLTALPFIETQAGD---VSA 328
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 57.3 bits (139), Expect = 2e-09
Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 34/208 (16%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAG--------LVKMPGKSVLDDS 99
G +A+D + I RGQ+ I RQ G ++ + D
Sbjct: 149 GIKAVDSLVPIGRGQRELIIGD-------------RQTGKTSIAIDTIINQKRFNDGTDE 195
Query: 100 EDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE 159
+ ++ A+G T + + +M+ + A+D + + P + E
Sbjct: 196 KKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGE 255
Query: 160 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPG---YMYTNLATIYERAGR 216
+ KH L+I D+S A A R++S PGR +PG Y+++ L ERA +
Sbjct: 256 YFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERAAK 311
Query: 217 V--EGRNGSITQIPIL-TMPNDDFKVSA 241
+ GS+T +P++ T D VSA
Sbjct: 312 MNDAFGGGSLTALPVIETQAGD---VSA 336
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 53.8 bits (130), Expect = 2e-08
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 37/211 (17%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVF 107
G +A+D M I RGQ+ I RQ G + ++++ + ++
Sbjct: 149 GYKAVDSMIPIGRGQRELIIGD-------------RQTGKTALAIDAIINQRDSGIKCIY 195
Query: 108 AAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 167
A+G T + EE+G++ N + + A++ + + P E+ + +
Sbjct: 196 VAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDR-GE 254
Query: 168 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPG---YMYTNLATIYERAGRV------- 217
L+I D+S A A R++S PGR FPG Y+++ L ERA RV
Sbjct: 255 DALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRL---LERAARVNAEYVEA 311
Query: 218 ------EGRNGSITQIPIL-TMPNDDFKVSA 241
+G+ GS+T +PI+ T D VSA
Sbjct: 312 FTKGEVKGKTGSLTALPIIETQAGD---VSA 339
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 2e-05
Identities = 31/203 (15%), Positives = 67/203 (33%), Gaps = 51/203 (25%)
Query: 7 EEALTPDDLLYLEFLT---KFEKNFVSQEGERSFTPRD-LIGDSSGKRAIDVMNSIARGQ 62
EE L + Y +FL K E+ S RD L D+ + N ++R Q
Sbjct: 84 EEVLRIN---Y-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN---QVFAKYN-VSRLQ 135
Query: 63 KIPIFSAAGLPHNEI--AAQICRQAGLVK---MPG--KSVL------DDSED---NFAIV 106
P+ ++ A R A V + G K+ + +F I
Sbjct: 136 ----------PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 107 FAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE-----FL 161
+ + + ++ + ++ + +L + + + L
Sbjct: 186 WLNLKNCNSPETVLEM-------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 162 AYQCEKHVLVILTDMSSYAEALR 184
+ ++ L++L ++ + A+A
Sbjct: 239 KSKPYENCLLVLLNVQN-AKAWN 260
Score = 44.5 bits (104), Expect = 3e-05
Identities = 28/263 (10%), Positives = 73/263 (27%), Gaps = 66/263 (25%)
Query: 8 EALTPDDL--LYLEFLTKFEKNFVSQEGERSFTPRDLI----GDSSGKRAIDVMNS---- 57
L P + ++ L+ F + + P L+ D + V+N
Sbjct: 364 NVLEPAEYRKMFDR-LSVFPPS--------AHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 58 --IARGQKIPIFSAAGL-----PHNEIAAQICRQAGLV-------KMPGKSVLDDSEDNF 103
+ + K S + E + R +V ++ D +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRS--IVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 104 AIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAY 163
++ +G +++ E +FL+ R + ++ + A+
Sbjct: 473 --FYSHIGHHLKNIE---HP-ERMTLFRM--VFLDF-------RFLEQKIRHDS---TAW 514
Query: 164 QCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGR--VEGRN 221
+L L + Y + + E + + + + +
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYER----------LVNAILDFLPKIEENLICSKY 564
Query: 222 GSITQIPILTMPNDDFKVSAARE 244
+ +I L ++ A ++
Sbjct: 565 TDLLRI-ALMAEDEAIFEEAHKQ 586
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 7e-04
Identities = 45/315 (14%), Positives = 85/315 (26%), Gaps = 93/315 (29%)
Query: 7 EEALTPDDLL--YLEFLT-KFEKNFVSQEGE------RSFTPRDLIGDSSGKRAIDVMNS 57
+E TP +L+ +L +++ E + V Q + F L G+ D+ ++
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-------DI-HA 103
Query: 58 IARG----QKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVFAAMG-- 111
+A + L N I A+I + K ++ + A + A G
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 112 --VNM---------ETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPR----LA-L 155
+ +T D + + L + + L L
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAE----TLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 156 TTAE------FLAY---QCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTN 206
+L C L+ + ++ Y + + G PG + +
Sbjct: 220 ENPSNTPDKDYLLSIPISC---PLIGVIQLAHYVVTAK--------LLGFT--PGELRSY 266
Query: 207 LATIYERAGRVEG----------------RNGSITQIPIL---------TMPNDDFKVSA 241
L G +G I +L PN S
Sbjct: 267 LKGA---TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 242 AREEVPGRRGFPGYM 256
+ + G P M
Sbjct: 324 LEDSLENNEGVPSPM 338
Score = 31.2 bits (70), Expect = 0.45
Identities = 48/296 (16%), Positives = 85/296 (28%), Gaps = 91/296 (30%)
Query: 3 AVVGEEALTPDDLL-----YLEFLTKFEKNFVSQEGERSFTPRDLIGDSSGKRAIDVMNS 57
AV E + + + L F F+ ++ P + + +S
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVL--F---FIGVRCYEAY-PNTSL------PPSILEDS 327
Query: 58 IARGQKIP--IFSAAGLPHNEIAAQICRQAGLVKMPGKSV---LDDSEDNFAI------- 105
+ + +P + S + L ++ + + GK V L + N +
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYV-NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 106 ---------VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLA-------NDPTIERII 149
A G++ F ++ + S FL +A P + I
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSER--KLKFSNR----FLPVASPFHSHLLVPASDLIN 440
Query: 150 TPRLALTTAEFLAYQCEKHVLVILT--DMSSYAEALREVSA---AREEV----------- 193
L F A + V D+ + ++ E R V
Sbjct: 441 K-DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 194 ------PGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTM---PNDD--FK 238
PG G G L + R +G G + I T+ P+DD FK
Sbjct: 500 HILDFGPG--GASG-----LGVLTHRN--KDGT-G-VRVIVAGTLDINPDDDYGFK 544
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC
F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1
b.49.1.1 c.37.1.11
Length = 473
Score = 36.6 bits (85), Expect = 0.007
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 30/198 (15%)
Query: 48 GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSE--DNFAI 105
G + +D++ +G KI +F AG+ GK+VL E N A
Sbjct: 138 GIKVVDLLAPYIKGGKIGLFGGAGV-------------------GKTVLI-QELIHNIAQ 177
Query: 106 ------VFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAE 159
VFA +G + +++G + + N+P R+ LT AE
Sbjct: 178 EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAE 237
Query: 160 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEG 219
+ + + L+ + ++ + +A EVSA +P G+ + T + + ER
Sbjct: 238 YFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERI--TST 295
Query: 220 RNGSITQIPILTMPNDDF 237
GSIT I + +P DD+
Sbjct: 296 AKGSITSIQAIYVPADDY 313
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 28.1 bits (63), Expect = 3.8
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 125 EENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALR 184
E+N + V L N+P R+ ALT AE+ E+ VL+ + ++ + +A
Sbjct: 224 EQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGS 283
Query: 185 EVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQIPILTMPNDDF 237
EVSA +P G+ + T + ++ ER + GSIT I + +P DD
Sbjct: 284 EVSALLGRMPSAVGYQPTLSTEMGSLQERI--TSTKEGSITSIQAVYVPADDL 334
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A
{Homo sapiens} PDB: 2uz9_A* 3e0l_A
Length = 476
Score = 27.3 bits (61), Expect = 6.5
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 49/164 (29%)
Query: 66 IFSAAGLPHNEIAAQICRQAGLVKMPGKSVLD----------DSEDNFAIVFAAMGVNME 115
F+ + + A I + G GK +D +E++ E
Sbjct: 163 YFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPEYKETTEESIK----------E 212
Query: 116 TARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALT-TAEFLAY---QCEKHVLV 171
T RF + + N ++ I+TPR +L+ + + + L
Sbjct: 213 TERFVSE--------------MLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLH 258
Query: 172 ILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAG 215
I + +S E EV A + P + YT+ +Y++
Sbjct: 259 IQSHIS---ENRDEVEAVKNLYPSYKN-----YTS---VYDKNN 291
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 27.3 bits (61), Expect = 7.2
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 9/47 (19%)
Query: 170 LVILTDMSSYAEALREVSAAREEVPGRRG---------FPGYMYTNL 207
+ + D S Y E R + AA + + PG YTNL
Sbjct: 368 MERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNL 414
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas
palustris}
Length = 365
Score = 27.0 bits (60), Expect = 9.2
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 89 KMPGK-SVLDDSEDNFAIVFAAMGVNMET 116
K PG+ + F A GV +
Sbjct: 167 KFPGRRCMPAWPRFTFEAALMADGVTKDK 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.387
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,624,295
Number of extensions: 294140
Number of successful extensions: 594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 39
Length of query: 293
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 200
Effective length of database: 4,105,140
Effective search space: 821028000
Effective search space used: 821028000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)