RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5595
         (293 letters)



>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
           ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
          Length = 285

 Score =  178 bits (453), Expect = 3e-55
 Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 10/206 (4%)

Query: 36  SFTPRDLIGD--SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGK 93
              PR  + +   +G +A+D +  I RGQ+  I          IA               
Sbjct: 41  GIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN-----QKRF 95

Query: 94  SVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRL 153
           +   D +     ++ A+G    T     +   +  +M+   +    A+D    + + P  
Sbjct: 96  NDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYS 155

Query: 154 ALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYER 213
             +  E+      KH L+I  D+S  A A R++S      PGR  +PG ++   + + ER
Sbjct: 156 GCSMGEYFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER 214

Query: 214 AGRVEGRN--GSITQIPILTMPNDDF 237
           A ++      GS+T +P++     D 
Sbjct: 215 AAKMNDAFGGGSLTALPVIETQAGDV 240


>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
           ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 276

 Score =  174 bits (442), Expect = 9e-54
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 20/196 (10%)

Query: 48  GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVF 107
           G + +D++   A+G KI +F  AG+    +  ++                        VF
Sbjct: 55  GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA------------KAHGGYSVF 102

Query: 108 AAMGVNMETARFFKQDFEENG------SMENVCLFLNLANDPTIERIITPRLALTTAEFL 161
           A +G           +  E+G      +   V L     N+P   R       LT AE+ 
Sbjct: 103 AGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYF 162

Query: 162 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRN 221
             Q  + VL+ + ++  + +A  EVSA    +P   G+   + T++ T+ ER      + 
Sbjct: 163 RDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT--TKK 220

Query: 222 GSITQIPILTMPNDDF 237
           GSIT +  + +P DD 
Sbjct: 221 GSITSVQAIYVPADDL 236


>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
           ATP synthase {Spinach (Spinacia oleracea), chloroplast
           [TaxId: 3562]}
          Length = 276

 Score =  136 bits (344), Expect = 3e-39
 Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 18/206 (8%)

Query: 36  SFTPRDLIGD--SSGKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGK 93
               R  + +   +G  AID M  + RGQ+  I          +A               
Sbjct: 40  GIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQ-------- 91

Query: 94  SVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRL 153
                   N   V+ A+G    +      +F+E G+ME   +    A+ P   + + P  
Sbjct: 92  -----QGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYT 146

Query: 154 ALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYER 213
               AE+  Y+ E+H L+I  D+S  A+A R++S      PGR  +PG ++   + + ER
Sbjct: 147 GAALAEYFMYR-ERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER 205

Query: 214 AGRVE--GRNGSITQIPILTMPNDDF 237
           A ++      GS+T +PI+     D 
Sbjct: 206 AAKLSSLLGEGSMTALPIVETQAGDV 231


>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
           ATPase domain {Escherichia coli [TaxId: 562]}
          Length = 289

 Score =  101 bits (252), Expect = 9e-26
 Identities = 27/190 (14%), Positives = 54/190 (28%), Gaps = 20/190 (10%)

Query: 48  GKRAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKMPGKSVLDDSEDNFAIVF 107
             R +D+ + I RGQ+  I +        +   I +                  N     
Sbjct: 30  TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS--------------IAYNHPDCV 75

Query: 108 AAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 167
             + +  E      ++  E   +    +  +  ++P    +    + +  A+ L     K
Sbjct: 76  LMVLLIDE----RPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK-K 130

Query: 168 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTNLATIYERAGRVEGRNGSITQI 227
            V+++L  ++  A A   V  A  +V    G            +  A  VE         
Sbjct: 131 DVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIA 189

Query: 228 PILTMPNDDF 237
             L       
Sbjct: 190 TALIDTGSKM 199


>d1z8ga2 d.170.1.2 (A:50-159) Hepsin, N-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 110

 Score = 25.3 bits (55), Expect = 4.8
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 73  PHNEIAAQICRQAGLVKMP 91
           P     A IC+  G  K+P
Sbjct: 92  PRGRFLAAICQDCGRRKLP 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,077,237
Number of extensions: 49852
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 8
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)