BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5596
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 175 bits (444), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 106/145 (73%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
ITHPIPDL+GYITEGQI V R+LH + IYPPINVLPSLSRLM S IG TR+DH VS+
Sbjct: 310 ITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSD 369
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
Q+YA YA G+D++ + A+VG+EAL+ D +LEF FE FV QG ENRT+ ++L+IG
Sbjct: 370 QMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIG 429
Query: 121 WQLLRIFPKEMLKRIPASTLAEFYP 145
WQ+L P+ L RI + +++P
Sbjct: 430 WQILTHLPENQLGRIDNKYIQKYHP 454
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 175 bits (444), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 106/145 (73%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
ITHPIPDL+GYITEGQI V R+LH + IYPPINVLPSLSRLM S IG TR+DH VS+
Sbjct: 310 ITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSD 369
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
Q+YA YA G+D++ + A+VG+EAL+ D +LEF FE FV QG ENRT+ ++L+IG
Sbjct: 370 QMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIG 429
Query: 121 WQLLRIFPKEMLKRIPASTLAEFYP 145
WQ+L P+ L RI + +++P
Sbjct: 430 WQILTHLPENQLGRIDNKYIQKYHP 454
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 175 bits (444), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 106/145 (73%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
ITHPIPDL+GYITEGQI V R+LH + IYPPINVLPSLSRLM S IG TR+DH VS+
Sbjct: 319 ITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSD 378
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
Q+YA YA G+D++ + A+VG+EAL+ D +LEF FE FV QG ENRT+ ++L+IG
Sbjct: 379 QMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIG 438
Query: 121 WQLLRIFPKEMLKRIPASTLAEFYP 145
WQ+L P+ L RI + +++P
Sbjct: 439 WQILTHLPENQLGRIDNKYIQKYHP 463
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 175 bits (443), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 106/145 (73%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
ITHPIPDL+GYITEGQI V R+LH + IYPPINVLPSLSRLM S IG TR+DH VS+
Sbjct: 310 ITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSD 369
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
Q+YA YA G+D++ + A+VG+EAL+ D +LEF FE FV QG ENRT+ ++L+IG
Sbjct: 370 QMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIG 429
Query: 121 WQLLRIFPKEMLKRIPASTLAEFYP 145
WQ+L P+ L RI + +++P
Sbjct: 430 WQILTHLPENQLGRIDNKYIQKYHP 454
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 173 bits (439), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 106/145 (73%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
ITHPIPDL+GYITEGQI V R+LH + IYPPINVLPSLSRLM S IG TR+DH VS+
Sbjct: 319 ITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSD 378
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
Q+YA YA G+D++ + A+VG+EAL+ D +LEF FE FV QG ENRT+ ++L+IG
Sbjct: 379 QMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGWNENRTIEDTLEIG 438
Query: 121 WQLLRIFPKEMLKRIPASTLAEFYP 145
WQ+L P+ L RI + +++P
Sbjct: 439 WQILTHLPENQLGRIDNKYIQKYHP 463
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 165 bits (417), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 105/143 (73%), Gaps = 1/143 (0%)
Query: 2 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQ 61
THPIPDLTGYITEGQI + R+LH + IYPPI+ LPSLSRLM + +G+ TR+DH VS+Q
Sbjct: 322 THPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQ 381
Query: 62 LYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGW 121
LY+ YA G D++ + A++GE+ALT +D YL+F FE+ F++QG +NR++ ESL I W
Sbjct: 382 LYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFFINQGQ-QNRSIEESLQIAW 440
Query: 122 QLLRIFPKEMLKRIPASTLAEFY 144
LL + P+ LKRI + ++Y
Sbjct: 441 ALLSMLPQGELKRISKDHIGKYY 463
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 164 bits (416), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 105/143 (73%), Gaps = 1/143 (0%)
Query: 2 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQ 61
THPIPDLTGYITEGQI + R+LH + IYPPI+ LPSLSRLM + +G+ TR+DH VS+Q
Sbjct: 322 THPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQ 381
Query: 62 LYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGW 121
LY+ YA G D++ + A++GE+ALT +D YL+F FE+ F++QG +NR++ ESL I W
Sbjct: 382 LYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFFINQGQ-QNRSIEESLQIAW 440
Query: 122 QLLRIFPKEMLKRIPASTLAEFY 144
LL + P+ LKRI + ++Y
Sbjct: 441 ALLSMLPQGELKRISKDHIGKYY 463
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 157 bits (397), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 98/144 (68%)
Query: 2 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQ 61
THPIPDLTGYITEGQI + R+L+ I PPI+VLPSLSRL G TR+DH+ NQ
Sbjct: 319 THPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKTREDHAATMNQ 378
Query: 62 LYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGW 121
L+A YA GK + + V+GE AL+ D +Y +F +FE +V+QG Y NRT+ E+LD+GW
Sbjct: 379 LFAAYAQGKQAKELAVVLGESALSDIDKIYAKFAERFENEYVNQGFYTNRTITETLDLGW 438
Query: 122 QLLRIFPKEMLKRIPASTLAEFYP 145
+LL + P+ LKRI L ++ P
Sbjct: 439 ELLAMLPRTELKRIKDDLLDKYLP 462
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 157 bits (396), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%)
Query: 2 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQ 61
THPIPDLTGYITEGQI + R+L+ I PPI+VLPSLSRL G TR+DH+ NQ
Sbjct: 319 THPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKTREDHAATXNQ 378
Query: 62 LYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGW 121
L+A YA GK + + V+GE AL+ D +Y +F +FE +V+QG Y NRT+ E+LD+GW
Sbjct: 379 LFAAYAQGKQAKELAVVLGESALSDIDKIYAKFAERFENEYVNQGFYTNRTITETLDLGW 438
Query: 122 QLLRIFPKEMLKRIPASTLAEFYP 145
+LL P+ LKRI L ++ P
Sbjct: 439 ELLAXLPRTELKRIKDDLLDKYLP 462
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + R + IYP ++ L S SRL+ +A+ ++H DV++
Sbjct: 350 LTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV----VGQEHYDVAS 405
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
++ K +Q + A++G + L+ D L +E K ++ F+SQ
Sbjct: 406 KVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 449
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + R + IYP ++ L S SRL+ +A+ ++H DV++
Sbjct: 312 LTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV----VGQEHYDVAS 367
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
++ K +Q + A++G + L+ D L +E K ++ F+SQ
Sbjct: 368 KVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 411
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + R + IYP ++ L S SRL+ +A+ ++H DV++
Sbjct: 312 LTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV----VGQEHYDVAS 367
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
++ K +Q + A++G + L+ D L +E K ++ F+SQ
Sbjct: 368 KVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 411
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + R + IYP ++ L S SRL+ +A+ ++H DV++
Sbjct: 323 LTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV----VGQEHYDVAS 378
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
++ K +Q + A++G + L+ D L +E K ++ F+SQ
Sbjct: 379 KVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 422
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + R + IYP ++ L S SRL+ +A+ ++H DV++
Sbjct: 317 LTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV----VGQEHYDVAS 372
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
++ K +Q + A++G + L+ D L +E K ++ F+SQ
Sbjct: 373 KVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 416
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + R + IYP ++ L S SRL+ +A+ ++H DV++
Sbjct: 323 LTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV----VGQEHYDVAS 378
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
++ K +Q + A++G + L+ D L +E K ++ F+SQ
Sbjct: 379 KVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 422
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 19/136 (13%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + R + IYP ++ L S SR+M ++ +H DV+
Sbjct: 317 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP----NIVGSEHYDVAR 372
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
+ K +Q + A++G + L+ +D L + K ++ F+SQ
Sbjct: 373 GVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ--------------P 417
Query: 121 WQLLRIFPKEMLKRIP 136
+Q+ +F M K +P
Sbjct: 418 FQVAEVFTGHMGKLVP 433
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 2 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQ 61
T P P T + ++R+L IYP ++ L S SR++ A+ ++H V+
Sbjct: 307 TDPAPATTFAHLDATTNLERKLAEMGIYPAVDPLASTSRILSPAV----VGEEHYRVARG 362
Query: 62 LYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
+ D+Q + A++G + L+ +D L + K ++ F+SQ
Sbjct: 363 VQQVLQRYNDLQDIIAILGMDELSDEDKLIVARARKIQR-FLSQ 405
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + R + IYP ++ L S SR+M ++ +H DV+
Sbjct: 321 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP----NIVGSEHYDVAR 376
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
+ K +Q + A++G + L+ +D L + K ++ F+SQ
Sbjct: 377 GVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ 420
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + R + IYP ++ L S SR+M ++ +H DV+
Sbjct: 321 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP----NIVGSEHYDVAR 376
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
+ K +Q + A++G + L+ +D L + K ++ F+SQ
Sbjct: 377 GVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ 420
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + R + IYP ++ L S SR+M ++ +H DV+
Sbjct: 321 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP----NIVGSEHYDVAR 376
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
+ K +Q + A++G + L+ +D L + K ++ F+SQ
Sbjct: 377 GVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ 420
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + R + IYP ++ L S SR+M ++ +H DV+
Sbjct: 319 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP----NIVGSEHYDVAR 374
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
+ K +Q + A++G + L+ +D L + K ++ F+SQ
Sbjct: 375 GVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ 418
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + R + IYP ++ L S SR+M ++ +H DV+
Sbjct: 367 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP----NIVGSEHYDVAR 422
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
+ K +Q + A++G + L+ +D L + K ++ F+SQ
Sbjct: 423 GVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ 466
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + R + IYP ++ L S SR+M ++ +H DV+
Sbjct: 309 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP----NIVGSEHYDVAR 364
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
+ K +Q + A++G + L+ +D L + K ++ F+SQ
Sbjct: 365 GVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ 408
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + R L + IYP ++ L S S +++ I ++H +++
Sbjct: 334 LTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRI----VGEEHYEIAQ 389
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
++ K++Q + A++G + L+ +D L + K E+ F+SQ
Sbjct: 390 RVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIER-FLSQ 433
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 33.5 bits (75), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 25/98 (25%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYA 64
IP IT+GQI++ L N I P INV S+SR+ +A
Sbjct: 331 IPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAA------------------- 371
Query: 65 CYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF 102
++AMK V G+ L LE +F +
Sbjct: 372 ------QIKAMKKVAGKLKLELAQFAELEAFAQFASDL 403
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+T P P T + + + RQ+ + IYP ++ L S SR + + ++H D +
Sbjct: 303 LTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLV----VGQEHYDTAR 358
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
+ + ++++ + A++G + L+ +D L + K ++ F+SQ
Sbjct: 359 GVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQ 402
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 381 IPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 421
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 32.7 bits (73), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 338 IPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 378
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 32.7 bits (73), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 338 IPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 378
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 338 IPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 378
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 340 IPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAA 380
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 315 IPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 355
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 340 IPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAA 380
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
++ IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 316 VSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 360
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 32.7 bits (73), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 316 IPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAA 356
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 32.7 bits (73), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 315 IPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAA 355
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 340 IPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAA 380
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 375 IPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAA 415
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 2 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQ 61
T P P T + ++R+L IYP ++ L S SR A+ ++ ++H V+ +
Sbjct: 314 TDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSR----ALAPEIVGEEHYQVARK 369
Query: 62 LYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
+ K++Q + A++G + L+ +D L + + + F+SQ
Sbjct: 370 VQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQ-FFLSQ 412
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 32.7 bits (73), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 338 IPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 378
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 338 IPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 378
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
I+ P+ T + + +D L ++ +P IN + S S L + +G M + D S+
Sbjct: 404 ISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYS-LYSTEVGRYMDQILQQDWSD 462
Query: 61 QLYACYAIGKDVQAMKAVV---GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESL 117
+ I ++ + + +V G ++L+ +D L LE ++++ Q +++ + S
Sbjct: 463 MVTEGMRILQEEEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSR 522
Query: 118 DIGWQLLRI---FPKEMLKRI 135
+ + +L++ F KE K +
Sbjct: 523 EKQFNMLKVILTFGKEARKAL 543
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 4 PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS--NQ 61
PI D I +G I + R+L YP I++ S+SR M + I T + ++ V Q
Sbjct: 320 PIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALI----TEQHYARVRLFKQ 375
Query: 62 LYACYAIGKDVQAMKAVVGEEALTPDDLL--YLEFLTKFEKNFVSQGNYENRTVYESLDI 119
L + + +D+ + VG A D +L + + E F+ QG +E +SL
Sbjct: 376 LLSSFQRNRDLVS----VGAYAKGSDPMLDKAITLWPQLEA-FLQQGIFERADWEDSLQ- 429
Query: 120 GWQLLRIFP 128
L IFP
Sbjct: 430 --ALDLIFP 436
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 12 ITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IT+GQI+++ L N I P +N S+SR+ +A
Sbjct: 348 ITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAA 381
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
+ PI D I +G I + R+L +P I++ S SR+M + + + R
Sbjct: 228 VNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAE--CK 285
Query: 61 QLYAC------------YAIGKDVQAMKAV 78
+L A Y +G+D +A KA+
Sbjct: 286 KLIATYKNPELLIRIGEYTMGQDPEADKAI 315
>pdb|3ZDT|A Chain A, Crystal Structure Of Basic Patch Mutant Fak Ferm Domain
Fak31-405 K216a, K218a, R221a, K222a
pdb|3ZDT|B Chain B, Crystal Structure Of Basic Patch Mutant Fak Ferm Domain
Fak31-405 K216a, K218a, R221a, K222a
Length = 377
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 105 QGN-YENRTVYESLDIGWQLLRIFPKEMLKRIPASTLA 141
+GN E ++ YE L+ L R FPK +L + A+TLA
Sbjct: 156 RGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVAAATLA 193
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IP IT+GQI+++ L + P +NV S+SR+ +A
Sbjct: 330 IPTNVISITDGQIFLESDLFYSGVRPAVNVGISVSRVGGAA 370
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
I+ IP IT+GQIY++ L P INV S+SR+ SA
Sbjct: 339 ISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSRVGGSA 383
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 16 QIYVDRQLHNRQIYPPINVLPSLSR 40
++ + RQL N++I+P IN+L S +R
Sbjct: 346 ELVLSRQLANKRIFPAINLLLSGTR 370
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIG---EDMTRKDHSD 57
++ P+ T I +D L R+ +P IN S S L SA+ + +D+ +
Sbjct: 391 MSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYS-LFTSALDPWYRENVAEDYPE 449
Query: 58 VSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESL 117
+ + + +Q + +VG +AL + L +E ++F+ Q Y Y S+
Sbjct: 450 LRDAISELLQREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSM 509
Query: 118 DIGWQLLRIF 127
+ ++++
Sbjct: 510 KKAYGIMKMI 519
>pdb|3VYR|B Chain B, Crystal Structure Of The Hypc-Hypd Complex
pdb|3VYS|B Chain B, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form I)
pdb|3VYT|B Chain B, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form I
Inward)
pdb|3VYU|B Chain B, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form Ii)
Length = 372
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 93 EFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLK 133
E K+E N V+Q + +E +D W+ L +FPK L+
Sbjct: 256 ERAVKYEGNVVAQKMIDK--FFEVVDAKWRALGVFPKSGLE 294
>pdb|2Z1D|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation
Protein, Hypd From Thermococcus Kodakaraensis
pdb|2Z1D|B Chain B, Crystal Structure Of [nife] Hydrogenase Maturation
Protein, Hypd From Thermococcus Kodakaraensis
Length = 372
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 93 EFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLK 133
E K+E N V+Q + +E +D W+ L +FPK L+
Sbjct: 256 ERAVKYEGNVVAQKMIDK--FFEVVDAKWRALGVFPKSGLE 294
>pdb|2AL6|A Chain A, Ferm Domain Of Focal Adhesion Kinase
pdb|2AL6|B Chain B, Ferm Domain Of Focal Adhesion Kinase
Length = 375
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 105 QGN-YENRTVYESLDIGWQLLRIFPKEMLKRIPASTL 140
+GN E ++ YE L+ L R FPK +L + A TL
Sbjct: 154 RGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTL 190
>pdb|2AEH|A Chain A, Focal Adhesion Kinase 1
pdb|2AEH|B Chain B, Focal Adhesion Kinase 1
Length = 369
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 105 QGN-YENRTVYESLDIGWQLLRIFPKEMLKRIPASTL 140
+GN E ++ YE L+ L R FPK +L + A TL
Sbjct: 154 RGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTL 190
>pdb|2J0M|A Chain A, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase
Length = 371
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 105 QGN-YENRTVYESLDIGWQLLRIFPKEMLKRIPASTL 140
+GN E ++ YE L+ L R FPK +L + A TL
Sbjct: 156 RGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTL 192
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 105 QGN-YENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
+GN E ++ YE L+ L R FPK +L + A TL + + R
Sbjct: 154 RGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQ 200
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 105 QGN-YENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
+GN E ++ YE L+ L R FPK +L + A TL + + R
Sbjct: 154 RGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQ 200
>pdb|3OBK|A Chain A, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|B Chain B, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|C Chain C, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|D Chain D, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|E Chain E, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|F Chain F, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|G Chain G, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|H Chain H, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
Length = 356
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 23 LHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEE 82
+H+ + PI +P SRL ED+ ++ S + A K +K+V+ EE
Sbjct: 52 VHDEETSVPIPSMPGQSRLSM----EDLLKEVGEARSYGIKAFMLFPKVDDELKSVMAEE 107
Query: 83 ALTPDDLL 90
+ PD LL
Sbjct: 108 SYNPDGLL 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,550,718
Number of Sequences: 62578
Number of extensions: 169232
Number of successful extensions: 421
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 61
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)