Query psy5596
Match_columns 154
No_of_seqs 131 out of 1125
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 21:34:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01040 V-ATPase_V1_B V-type 100.0 6.2E-42 1.3E-46 296.0 15.0 149 1-149 317-465 (466)
2 PRK04196 V-type ATP synthase s 100.0 5.3E-39 1.1E-43 279.2 13.2 148 1-148 310-457 (460)
3 TIGR01041 ATP_syn_B_arch ATP s 100.0 8.8E-39 1.9E-43 277.4 12.8 147 1-147 308-454 (458)
4 COG1157 FliI Flagellar biosynt 100.0 5.4E-34 1.2E-38 242.7 9.0 115 1-124 321-439 (441)
5 COG1156 NtpB Archaeal/vacuolar 100.0 1.1E-32 2.4E-37 233.5 12.9 149 1-149 313-461 (463)
6 PRK04192 V-type ATP synthase s 100.0 3.6E-33 7.9E-38 246.9 9.9 126 1-127 397-525 (586)
7 TIGR01043 ATP_syn_A_arch ATP s 100.0 3.6E-33 7.8E-38 246.6 9.2 125 1-126 394-521 (578)
8 KOG1351|consensus 100.0 3.4E-31 7.3E-36 218.6 12.4 150 1-150 339-488 (489)
9 TIGR01042 V-ATPase_V1_A V-type 100.0 2.2E-31 4.7E-36 234.9 10.4 126 1-127 400-527 (591)
10 PRK02118 V-type ATP synthase s 100.0 1.3E-30 2.8E-35 224.8 11.9 136 1-149 300-435 (436)
11 PRK07196 fliI flagellum-specif 100.0 1.5E-30 3.3E-35 224.7 9.1 115 1-124 314-432 (434)
12 TIGR03305 alt_F1F0_F1_bet alte 100.0 3.8E-30 8.2E-35 222.8 11.2 128 1-138 300-438 (449)
13 PRK08972 fliI flagellum-specif 100.0 1.6E-30 3.4E-35 224.5 8.8 116 1-125 322-441 (444)
14 PRK05688 fliI flagellum-specif 100.0 1.7E-30 3.8E-35 225.0 8.9 116 1-125 328-447 (451)
15 TIGR01039 atpD ATP synthase, F 100.0 4.7E-30 1E-34 222.5 11.1 128 1-138 305-443 (461)
16 PRK08472 fliI flagellum-specif 100.0 1.9E-30 4.1E-35 224.1 8.4 115 1-124 315-433 (434)
17 PRK07594 type III secretion sy 100.0 1.8E-30 3.9E-35 224.2 7.9 115 1-124 313-431 (433)
18 PRK12597 F0F1 ATP synthase sub 100.0 5.8E-30 1.2E-34 222.5 11.0 128 1-138 305-443 (461)
19 PRK08927 fliI flagellum-specif 100.0 2.6E-30 5.7E-35 223.5 8.8 116 1-125 318-437 (442)
20 PRK09281 F0F1 ATP synthase sub 100.0 6.2E-30 1.3E-34 224.3 10.9 135 1-143 326-464 (502)
21 PRK09280 F0F1 ATP synthase sub 100.0 7.5E-30 1.6E-34 221.6 11.1 128 1-138 306-444 (463)
22 PRK06936 type III secretion sy 100.0 3.3E-30 7.2E-35 222.7 8.2 115 1-124 320-438 (439)
23 PRK06820 type III secretion sy 100.0 5.5E-30 1.2E-34 221.6 9.1 115 1-124 321-439 (440)
24 PRK09099 type III secretion sy 100.0 6.7E-30 1.5E-34 221.2 9.5 115 1-124 321-439 (441)
25 PRK07960 fliI flagellum-specif 100.0 5.4E-30 1.2E-34 221.8 8.5 115 1-124 335-453 (455)
26 TIGR03498 FliI_clade3 flagella 100.0 7.4E-30 1.6E-34 219.8 8.4 114 1-123 300-417 (418)
27 PRK08149 ATP synthase SpaL; Va 100.0 1E-29 2.2E-34 219.3 9.2 115 1-124 309-427 (428)
28 CHL00060 atpB ATP synthase CF1 100.0 3E-29 6.6E-34 218.8 11.6 128 1-138 330-468 (494)
29 TIGR02546 III_secr_ATP type II 100.0 1.4E-29 3.1E-34 218.4 9.5 115 1-124 303-421 (422)
30 TIGR03324 alt_F1F0_F1_al alter 100.0 5.4E-29 1.2E-33 217.5 11.6 131 1-143 326-456 (497)
31 PRK06315 type III secretion sy 100.0 1.6E-29 3.4E-34 218.9 8.2 115 1-124 323-441 (442)
32 PRK13343 F0F1 ATP synthase sub 100.0 1E-28 2.2E-33 216.3 11.8 132 1-144 326-457 (502)
33 TIGR03497 FliI_clade2 flagella 100.0 3.7E-29 8.1E-34 215.3 8.6 114 1-123 295-412 (413)
34 TIGR03496 FliI_clade1 flagella 100.0 3.8E-29 8.3E-34 215.1 8.2 110 1-119 297-410 (411)
35 PRK14698 V-type ATP synthase s 100.0 5E-29 1.1E-33 232.2 8.7 125 1-126 828-955 (1017)
36 PRK06002 fliI flagellum-specif 100.0 7.6E-29 1.6E-33 214.7 9.0 115 1-125 324-442 (450)
37 TIGR00962 atpA proton transloc 100.0 2.4E-28 5.1E-33 214.3 11.7 131 1-143 325-455 (501)
38 PRK06793 fliI flagellum-specif 100.0 1.6E-28 3.6E-33 212.0 8.1 115 1-123 313-431 (432)
39 CHL00059 atpA ATP synthase CF1 99.9 1.3E-27 2.8E-32 208.2 11.5 131 1-143 305-435 (485)
40 TIGR01026 fliI_yscN ATPase Fli 99.9 1E-27 2.2E-32 207.8 8.5 115 1-124 321-439 (440)
41 PRK07165 F0F1 ATP synthase sub 99.9 6.6E-27 1.4E-31 204.5 12.3 121 1-129 302-426 (507)
42 PRK05922 type III secretion sy 99.9 2.5E-27 5.3E-32 204.7 8.7 115 1-125 314-432 (434)
43 PRK07721 fliI flagellum-specif 99.9 1E-26 2.2E-31 201.5 8.7 116 1-125 316-435 (438)
44 COG0055 AtpD F0F1-type ATP syn 99.9 8.3E-26 1.8E-30 190.8 8.4 128 1-138 309-447 (468)
45 COG1155 NtpA Archaeal/vacuolar 99.9 2.7E-25 5.9E-30 193.2 8.0 126 1-127 396-524 (588)
46 PTZ00185 ATPase alpha subunit; 99.9 1.3E-24 2.9E-29 190.3 10.4 126 1-143 361-486 (574)
47 cd01136 ATPase_flagellum-secre 99.9 4.7E-25 1E-29 184.9 5.1 96 1-105 227-326 (326)
48 KOG1352|consensus 99.9 2E-24 4.3E-29 183.6 5.1 125 1-126 419-545 (618)
49 KOG1350|consensus 99.9 2.4E-23 5.1E-28 173.7 7.0 132 1-138 359-497 (521)
50 COG0056 AtpA F0F1-type ATP syn 99.8 1.1E-18 2.3E-23 150.2 9.5 130 2-143 327-456 (504)
51 PRK12608 transcription termina 99.7 2.4E-17 5.2E-22 140.4 5.8 70 1-75 289-358 (380)
52 TIGR00767 rho transcription te 99.6 7E-16 1.5E-20 132.5 5.6 69 1-74 324-392 (415)
53 PRK09376 rho transcription ter 99.6 7.1E-16 1.5E-20 132.2 4.9 71 1-76 325-395 (416)
54 PRK12678 transcription termina 99.5 6.5E-14 1.4E-18 124.8 5.6 70 1-75 572-641 (672)
55 cd01128 rho_factor Transcripti 99.4 2.7E-13 5.8E-18 110.2 4.6 70 2-76 173-242 (249)
56 KOG1353|consensus 99.3 1.1E-12 2.3E-17 106.9 4.7 107 3-118 229-335 (340)
57 PF00306 ATP-synt_ab_C: ATP sy 99.2 1E-10 2.2E-15 84.2 8.4 69 56-125 1-77 (113)
58 COG1158 Rho Transcription term 97.2 0.00054 1.2E-08 58.4 4.9 44 5-48 333-376 (422)
59 PRK09280 F0F1 ATP synthase sub 56.2 14 0.0003 33.0 3.6 44 54-98 358-402 (463)
60 CHL00060 atpB ATP synthase CF1 49.5 14 0.00031 33.2 2.6 78 54-132 382-470 (494)
61 TIGR01039 atpD ATP synthase, F 48.5 22 0.00049 31.7 3.6 49 54-103 357-406 (461)
62 PRK12597 F0F1 ATP synthase sub 48.4 22 0.00048 31.7 3.6 46 54-99 357-402 (461)
63 COG3068 Uncharacterized protei 32.9 44 0.00095 25.9 2.6 26 22-47 84-109 (194)
64 TIGR03305 alt_F1F0_F1_bet alte 31.8 67 0.0014 28.6 3.9 44 54-98 352-396 (449)
65 KOG0506|consensus 31.2 46 0.001 30.2 2.8 51 15-72 143-193 (622)
66 PF15581 Imm35: Immunity prote 29.7 63 0.0014 22.5 2.7 40 98-144 16-55 (93)
67 PF03725 RNase_PH_C: 3' exorib 25.4 42 0.0009 21.0 1.2 24 3-26 1-24 (68)
68 TIGR01042 V-ATPase_V1_A V-type 25.1 1.7E+02 0.0038 27.0 5.5 70 54-125 457-529 (591)
69 PLN00218 predicted protein; Pr 23.1 42 0.00091 24.3 0.9 20 13-32 101-120 (151)
70 PF06018 CodY: CodY GAF-like d 20.5 1.5E+02 0.0032 23.1 3.6 34 91-125 2-35 (177)
No 1
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=6.2e-42 Score=296.00 Aligned_cols=149 Identities=89% Similarity=1.380 Sum_probs=144.9
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
+||||||++++||||||||||+||++||||||||+.|+||+|+.++++++++++|.++++++++.|+++++|+++|+|+|
T Consensus 317 ~~~pI~d~~~sIlDGhIvLsr~La~~g~yPAIDvl~SvSRl~~~v~~~~~~~~~h~~~a~~l~~~y~~~~~L~~ig~y~G 396 (466)
T TIGR01040 317 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 396 (466)
T ss_pred CCCcchhhhhhhcceEEEECHHHHhCCCCCccCCccchhhccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCCCCc
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDSR 149 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~~~~ 149 (154)
.|+++|+++.++.+++.|++.||+|+.++..++++++.+.|.||+.+|.+++++||+++|++|||+.|-
T Consensus 397 ~d~l~d~a~~~l~~~~~i~~~FL~Q~~~~~~~~~~~l~~~w~ll~~~~~~~~~r~~~~~~~~~~~~~~~ 465 (466)
T TIGR01040 397 EEALSSEDLLYLEFLDKFEKNFIAQGPYENRTIFESLDIAWQLLRIFPKEMLKRIPAKILEEFYPRKSA 465 (466)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHHHHhCCHHHhccCCHHHHHHhcccccC
Confidence 999999999999999999899999999999999999999999999999999999999999999998763
No 2
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=5.3e-39 Score=279.18 Aligned_cols=148 Identities=59% Similarity=0.998 Sum_probs=143.3
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
+||||+|++++||||||||||+||++||||||||+.|+||+|+.+++++++.++|.++++++++.|+++++|+++++|+|
T Consensus 310 ~~dpI~d~~~sI~DG~ivLsr~La~~g~~PAIDvl~SvSR~~~~~~~~~~~~~~~~~~a~~l~~~y~~~~~l~~~~~~~G 389 (460)
T PRK04196 310 ITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGKTREDHKDVANQLYAAYARGKDLRELAAIVG 389 (460)
T ss_pred CCCchhhhhhhhcceEEEEcHHHHhCCCCCccCCccchhhhccccCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999889888888999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCCCC
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDS 148 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~~~ 148 (154)
.++++|+++..+++++++++.||+|+.++++++++++..+|++++.++.+++.+++.+++++|||+..
T Consensus 390 ~~~l~d~~~~~~~~~~~~~~~fL~Q~~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~l~~~~~~~~~ 457 (460)
T PRK04196 390 EEALSERDRKYLKFADAFEREFVNQGFDENRSIEETLDLGWELLSILPESELKRIKDEYIEKYHPKYR 457 (460)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999988999999999999999999999999999999999999999999999864
No 3
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=8.8e-39 Score=277.45 Aligned_cols=147 Identities=61% Similarity=1.010 Sum_probs=141.6
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
+||||||++++||||||||||+||++||||||||+.|+||+|+.++++|++.++|.++++++++.|+++++|+++++|+|
T Consensus 308 ~~dPI~d~~~sIlDGhivLsr~La~~G~yPAIDvl~SvSR~~~~~ig~~~~~~~~~~~a~~l~~~y~~~~~L~~i~~~~G 387 (458)
T TIGR01041 308 ITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHKDVSDQLYAAYAEGRDLRGLVAIVG 387 (458)
T ss_pred CCCchHHhhhhhcceEEEEcHHHHhCCCCCccCCccchhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999998778878888999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCCC
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRD 147 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~~ 147 (154)
.|+++|+++..+++++.|++.||+|+.++++++++++..+|+++..++.+++.+++..++++|||+.
T Consensus 388 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 454 (458)
T TIGR01041 388 EEALSERDRKYLKFADLFERRFVRQGRNENRSIEETLDIGWELLSILPESELKRIDEEYIEKYHPKY 454 (458)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999976999999999999999999999999999999999999999999999954
No 4
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=5.4e-34 Score=242.69 Aligned_cols=115 Identities=28% Similarity=0.429 Sum_probs=106.9
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHH---HHHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS---NQLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a---~~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++|+||||||||||+||++||||||||+.|+||+|++++++ +|.+.| +++++.|+++++|+++|+
T Consensus 321 ~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i~~~-----~h~~~a~~~r~lls~y~e~edLi~iGa 395 (441)
T COG1157 321 MNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQIVSE-----EHRKAARRLRQLLSRYEENEDLIRIGA 395 (441)
T ss_pred CCCchhhhhhhhccceEEeeHhHHhcCCCCCcchHHHHHHHhhhcCCH-----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999999999999999885 888887 589999999999999999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL 124 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll 124 (154)
|+ |.|+..|.++..++. | ++||+|+.++..+++++++.+..++
T Consensus 396 Y~~G~D~~~D~Ai~~~p~---i-~~fL~Q~~~e~~~~~~t~~~L~~~~ 439 (441)
T COG1157 396 YQKGSDPELDKAIKLYPK---I-EQFLKQGIDEKSSFEETLEQLEAIL 439 (441)
T ss_pred ccCCCCHHHHHHHHhhHH---H-HHHHcCCccccCCHHHHHHHHHHHh
Confidence 99 999999999887766 5 9999999999999999999877765
No 5
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=1.1e-32 Score=233.52 Aligned_cols=149 Identities=60% Similarity=1.015 Sum_probs=145.7
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
+||||||.|.+|+.|||||||+|..+|+||+||++.|+||+|+..+++..|+++|..+++++++.|++.+++.++.+.+|
T Consensus 313 ITHPIPDlTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~~giG~g~TReDH~~~snql~a~YA~g~d~r~l~avvg 392 (463)
T COG1156 313 ITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHGDVSNQLYAAYAEGRDLRELVAVVG 392 (463)
T ss_pred cCCCCCcccceeccceEEEEhhcccCCcCCCccccccHHHHhhcccCCCccccccHHHHHHHHHHHhcchhHHHHHHHhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCCCCc
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDSR 149 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~~~~ 149 (154)
.+.+++.|+..++.+..+...|++|+.+++.+++++++..|.+|+.+|..+|++|+.++|++|||+..-
T Consensus 393 e~aLs~~D~~~l~F~d~FE~~fi~qg~~enrsieetLdlgW~lL~~lp~~el~ri~~~~I~ky~p~~~~ 461 (463)
T COG1156 393 EEALSERDRKYLKFADLFEQRFIKQGRYENRSIEETLDLGWELLSILPESELTRIKPDLIDKYHPKYRK 461 (463)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhHHHHHhCCHhHhccCCHHHHHHhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999998754
No 6
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=3.6e-33 Score=246.90 Aligned_cols=126 Identities=21% Similarity=0.343 Sum_probs=119.6
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccC---cHHHHHHHHHHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMT---RKDHSDVSNQLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~---~~~~~~~a~~~~~~y~~~~eL~~ig~ 77 (154)
||||||++|++|+||||+|||+||++||||||||+.|+||+++.+ .+||. +++|.+++++++++|++++++.++.+
T Consensus 397 ~sePVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~-~~~~~~~v~~~~~~~~~~~~~~L~~~~el~eiv~ 475 (586)
T PRK04192 397 FSEPVTQNTLRIVKVFWALDAELADRRHFPAINWLTSYSLYLDQV-APWWEENVDPDWRELRDEAMDLLQREAELQEIVR 475 (586)
T ss_pred CCcchHHHHHHHhCceEEEcHHHHhCCcCCccCCccchhhhhhcc-cchhhcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999997 45664 37999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhC
Q psy5596 78 VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIF 127 (154)
Q Consensus 78 ~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~ 127 (154)
++|.+.|+++++.++.++++|++.||+|++|+++|.+|+++++|.||+++
T Consensus 476 lvG~d~Ls~~d~~~l~~a~~i~~~fL~Q~~f~~~d~~~~l~k~~~~l~~i 525 (586)
T PRK04192 476 LVGPDALPEEDRLILEVARLIREDFLQQNAFDPVDTYCPPEKQYEMLKLI 525 (586)
T ss_pred HhCcccCCHHHHHHHHHHHHHHHhhcCCCCCCCccccccHHHHHHHHHHH
Confidence 99999999999999999999988999999999999999999999998854
No 7
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=3.6e-33 Score=246.61 Aligned_cols=125 Identities=21% Similarity=0.302 Sum_probs=116.8
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhcccc---CcHHHHHHHHHHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDM---TRKDHSDVSNQLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~---~~~~~~~~a~~~~~~y~~~~eL~~ig~ 77 (154)
|+|||||+|++|+||||+|||+||++||||||||+.|+||+|+.+ ++|| ..++|.+++++++++|+++++|+++.+
T Consensus 394 ~sdPVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~-~~~~~~~v~~~~~~~~~~~~~lL~~~~el~~iv~ 472 (578)
T TIGR01043 394 FSEPVTQNTLRIVKVFWALDADLAQRRHFPAINWLQSYSLYVDLV-QDWWHENVDPDWREMRDEAMDLLQKESELQEIVQ 472 (578)
T ss_pred CCccHHHHHHHHhCcEEEeCHHHHhcCCCCCcCcccchhhhcccc-ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999996 7788 567999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhh
Q psy5596 78 VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRI 126 (154)
Q Consensus 78 ~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~ 126 (154)
++|.|++++.|+.++..++.+++.||+|++|+++|.+|+++++..+|..
T Consensus 473 lvG~d~L~~~d~~il~~a~~i~e~FLqQ~~~~~~d~~~~~~k~~~~L~~ 521 (578)
T TIGR01043 473 LVGPDALPERQKLILEVARMIREAFLQQNAFDPVDTYCPPQKQYRILRA 521 (578)
T ss_pred ccCCCCCCHHHHHHHHHhHHHHHhhCCCCCCCCccCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999877777777777653
No 8
>KOG1351|consensus
Probab=99.97 E-value=3.4e-31 Score=218.65 Aligned_cols=150 Identities=90% Similarity=1.376 Sum_probs=146.8
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
+|+||||-|.+|++|+|+.||+|.++.+||+||+|-|+||+|...+++++++.+|.++.++++++|+-.++.+.|-+.+|
T Consensus 339 ithpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksaigegmtr~dh~dvsnqlya~yaigkdvqamkavvg 418 (489)
T KOG1351|consen 339 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 418 (489)
T ss_pred cCCCCCcccceeecceEEEehhhhcccCCCCcccchhHHHHHHHHhcCCcccccchhhHHHHHHHHHhcchHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCCCCcc
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~~~~~ 150 (154)
.++++.+|+.+++...++...|+.|+.|+..+..++++..|.||++||++.|++||+..+++|+++++.+
T Consensus 419 eeals~ed~l~lefl~kfek~fi~qg~yenrtvfesldi~w~llrifpreml~rip~~~ld~~y~r~~~~ 488 (489)
T KOG1351|consen 419 EEALSSEDLLYLEFLDKFEKNFISQGAYENRTVFESLDIAWQLLRIFPREMLKRIPAKTLDEFYSRDSTK 488 (489)
T ss_pred ccccChhhhHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHhHHHHHhhccHHHHHHhccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998854
No 9
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=99.97 E-value=2.2e-31 Score=234.94 Aligned_cols=126 Identities=20% Similarity=0.301 Sum_probs=117.3
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCc--HHHHHHHHHHHHHHHccHhHHHHHhh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTR--KDHSDVSNQLYACYAIGKDVQAMKAV 78 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~--~~~~~~a~~~~~~y~~~~eL~~ig~~ 78 (154)
|+|||+++|++|+||||+|||+||++||||||||+.|+||||+.+ .+||+. ++|.+++++++.+|+++++++++.++
T Consensus 400 ~sePVt~~t~~i~~~f~~Ldr~LA~~ghyPAId~l~S~Sr~~~~l-~~~~~~~~~~~~~~~~~~~~lL~~~~el~eiv~l 478 (591)
T TIGR01042 400 FSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRAL-EEFYEKFYPEFVPLRTKAKEILQEEEDLNEIVQL 478 (591)
T ss_pred CCCchHHHHHHHhcceeeeCHHHHhCCCCCCcCCchhhhhhhhhc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999996 557765 79999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhC
Q psy5596 79 VGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIF 127 (154)
Q Consensus 79 ~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~ 127 (154)
+|.+.+++.|+.++..++.++++||+|++|+.+|..|+++++..+|+.+
T Consensus 479 ~g~~~l~~~d~~i~~~a~~i~e~FLqQ~a~~~~d~~~~~~kt~~~L~~i 527 (591)
T TIGR01042 479 VGKDALAETDKITLEVAKLIKEDFLQQNGYTPYDRFCPFYKTVGMMRNM 527 (591)
T ss_pred hCCccCCHHHHHHHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888888888887643
No 10
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=99.97 E-value=1.3e-30 Score=224.76 Aligned_cols=136 Identities=35% Similarity=0.566 Sum_probs=127.9
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
+||||||++++||||||||||+| |||+.|+||+|+.++++ +++++|+++|+++++.|+++++++++.++ |
T Consensus 300 ~tdPi~d~~~silDGqIvLsR~l--------ID~l~S~SRl~~~v~g~-~t~~~h~~~a~~l~~~~a~y~e~~dli~i-G 369 (436)
T PRK02118 300 VTHPVPDNTGYITEGQFYLRRGR--------IDPFGSLSRLKQLVIGK-KTREDHGDLMNAMIRLYADSREAKEKMAM-G 369 (436)
T ss_pred cCccHHHHHHHhcCcEEEecccc--------ccCccccccccccccCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHh-h
Confidence 68999999999999999999999 99999999999999997 88889999999999999999999999996 8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCCCCc
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDSR 149 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~~~~ 149 (154)
.+|+++|+.++.++++|.+.|++|+ +.+++++|++..|.+|+.+|++++++|++++|++|||+..+
T Consensus 370 -~eLs~~d~~~l~~~~~~e~~~~~~g--~~~~~~etl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (436)
T PRK02118 370 -FKLSNWDEKLLKFSELFESRLMDLE--VNIPLEEALDLGWKILAQCFHPEEVGIKEQLIDKYWPKNCL 435 (436)
T ss_pred -hhcCHHHHHHHHHHHHHHHHhhcCC--CcccHHHHHHHHHHHHHHCCHHHHhcCCHHHHHHhhccccC
Confidence 5999999999999999977777777 88999999999999999999999999999999999997554
No 11
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=99.97 E-value=1.5e-30 Score=224.70 Aligned_cols=115 Identities=23% Similarity=0.371 Sum_probs=103.1
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++++||||||||||+||++||||||||+.|+||+|+.++++ +|+++++ ++++.|++.++|+++|.
T Consensus 314 ~~dpi~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~~~~~-----~~~~~a~~~r~~~a~y~e~~~li~~g~ 388 (434)
T PRK07196 314 QQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGS-----QQAKAASLLKQCYADYMAIKPLIPLGG 388 (434)
T ss_pred CCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhccCH-----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999999999999998884 8999985 67777888888888888
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL 124 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll 124 (154)
|+ |.|+++|.++.. .+.| +.||+|+.+++++++++++.+.+++
T Consensus 389 y~~g~d~~~d~ai~~---~~~i-~~fL~Q~~~e~~~~~~~~~~l~~~~ 432 (434)
T PRK07196 389 YVAGADPMADQAVHY---YPAI-TQFLRQEVGHPALFSASVEQLTGMF 432 (434)
T ss_pred CCCCCCHHHHHHHHh---HHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 98 999998887664 4556 9999999999999999999887765
No 12
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=99.96 E-value=3.8e-30 Score=222.84 Aligned_cols=128 Identities=20% Similarity=0.326 Sum_probs=115.5
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV 79 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~ 79 (154)
+||||+|++++||||||||||+||++||||||||+.|+||+| +.+++ ++|+++++++++.|++++++.++.+..
T Consensus 300 ~~dPi~d~~~silDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~-----~~h~~~a~~~~~~l~~y~e~~~li~~~ 374 (449)
T TIGR03305 300 FTDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVG-----ERHYDLAREVRQTLAQYEELKDIIAML 374 (449)
T ss_pred CCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCCcchhhcCCcccCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999999999999999999 66655 499999999999999999999988887
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCC----------CCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596 80 GEEALTPDDLLYLEFLTKFEKNFVSQGNYEN----------RTVYESLDIGWQLLRIFPKEMLKRIPAS 138 (154)
Q Consensus 80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~----------~~~~~sl~~~~~ll~~~~~~~~~~i~~~ 138 (154)
|.+.+++.+...+.+++.| +.||+|+.++. +++++|++-.|.++. +.++.+|+.
T Consensus 375 g~~~l~~~~~~~i~~~~~i-~~fL~Q~~~~~e~~t~~~g~~v~l~~tl~~~~~il~----g~~~~~~~~ 438 (449)
T TIGR03305 375 GLEQLSREDRRVVNRARRL-ERFLTQPFFTTEQFTGMKGKTVSLEDALDGCERILN----DEFQDYPER 438 (449)
T ss_pred CCccCCHHHHHHHHHHHHH-HHHhCCCCcccccccCCCCceeEHHHHHHHHHHHhc----CCcccCCHH
Confidence 8789999999999999999 88999999988 889999999998864 456666664
No 13
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=99.96 E-value=1.6e-30 Score=224.53 Aligned_cols=116 Identities=25% Similarity=0.405 Sum_probs=106.8
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHH---HHHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS---NQLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a---~~~~~~y~~~~eL~~ig~ 77 (154)
+||||+|++++|+||||||||+||++||||||||+.|+||+|+.+++ ++|.+++ +++++.|++.++|+++|+
T Consensus 322 ~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~i~~-----~~h~~~a~~~r~~ls~y~~~e~li~~g~ 396 (444)
T PRK08972 322 LQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMVIS-----EEHLEAMRRVKQVYSLYQQNRDLISIGA 396 (444)
T ss_pred CCcchHHhhhhhcceEEEEcHHHHhCCCCCeeCCccccccCchhcCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999877 4999999 689999999999999999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR 125 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~ 125 (154)
|. |.|+..|+++.. .+.| ++||+|+.+++.+++++++.+.++++
T Consensus 397 y~~g~d~~~d~ai~~---~~~i-~~fl~Q~~~~~~~~~~~~~~l~~~~~ 441 (444)
T PRK08972 397 YKQGSDPRIDNAIRL---QPAM-NAFLQQTMKEAVPYDMSVNMLKQLAA 441 (444)
T ss_pred ccCCCCHHHHHHHHh---hHHH-HHHhCCCCCCCCCHHHHHHHHHHHHh
Confidence 99 999988887664 4556 99999999999999999999988875
No 14
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=99.96 E-value=1.7e-30 Score=225.04 Aligned_cols=116 Identities=25% Similarity=0.395 Sum_probs=103.3
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHH---HHHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS---NQLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a---~~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++++||||||||||+||++||||||||+.|+||+|+.++++ +|.+++ +++++.|++.++|+++|+
T Consensus 328 ~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~-----~~~~~a~~~r~~la~y~~~~dli~~g~ 402 (451)
T PRK05688 328 QQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDP-----EHLRRAQRFKQLWSRYQQSRDLISVGA 402 (451)
T ss_pred CCCchHHHHHhhccEEEEEcHHHHhCCCCCccCCccccCccchhhCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999999999998774 999999 567777778889999999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR 125 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~ 125 (154)
|+ |.|+..|.+ +.+.+.| +.||+|+.+++.+++++++.+.+++.
T Consensus 403 y~~g~d~~~d~a---i~~~~~i-~~fL~Q~~~e~~~~~~~~~~l~~~~~ 447 (451)
T PRK05688 403 YVAGGDPETDLA---IARFPHL-VQFLRQGLRENVSLAQSREQLAAIFA 447 (451)
T ss_pred ccCCCCHHHHHH---HHhhHHH-HHHhCCCCCCCCCHHHHHHHHHHHhc
Confidence 99 888755554 4466677 99999999999999999998887764
No 15
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=99.96 E-value=4.7e-30 Score=222.49 Aligned_cols=128 Identities=24% Similarity=0.364 Sum_probs=113.6
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV 79 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~ 79 (154)
++|||+|++++||||||||||+||++||||||||+.|+||+| +.+++ ++|+++++++++.|++++++.++....
T Consensus 305 ~~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~-----~~h~~~a~~~r~~la~y~e~~~li~i~ 379 (461)
T TIGR01039 305 LTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPSVVG-----EEHYDVARGVQQILQRYKELQDIIAIL 379 (461)
T ss_pred CCCccHHHHHHhcceEEEECHHHHhCCCCCCcCCccccccccCCccCC-----HHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 689999999999999999999999999999999999999999 77666 499999999999988888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCC----------CCCCCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596 80 GEEALTPDDLLYLEFLTKFEKNFVSQGN----------YENRTVYESLDIGWQLLRIFPKEMLKRIPAS 138 (154)
Q Consensus 80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~----------~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~ 138 (154)
|.++++|.+...+.+++.| ++||+|+. .+.++++++++.+.+++. ++++.+|+.
T Consensus 380 g~~~lsd~~~~~l~~~~~i-~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~----g~~~~~~~~ 443 (461)
T TIGR01039 380 GMDELSEEDKLTVERARRI-QRFLSQPFFVAEVFTGQPGKYVPLKDTIRGFKEILE----GKYDHLPEQ 443 (461)
T ss_pred CCccCCHHHHHHHHhHHHH-HHHhCCCCchhccccCCCCcccCHHHHHHHHHHHhC----CCccCCCHH
Confidence 7778899899999999999 89999999 799999999998887764 345566654
No 16
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=99.96 E-value=1.9e-30 Score=224.15 Aligned_cols=115 Identities=25% Similarity=0.392 Sum_probs=104.2
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
|||||+|++++||||||||||+||++||||||||+.|+||+|+.++++ +|+++++ ++++.|++.++|+++|.
T Consensus 315 ~~dpi~d~~~~i~Dg~ivLsr~la~~g~~PAIDvl~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~e~li~~G~ 389 (434)
T PRK08472 315 MSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMNDIISP-----EHKLAARKFKRLYSLLKENEVLIRIGA 389 (434)
T ss_pred CCCCchHHhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhcCCH-----HHHHHHHHHHHHHHhchhHHHHHHhhC
Confidence 689999999999999999999999999999999999999999999885 8898884 78888899999999999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL 124 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll 124 (154)
|+ |.|+..|.+ +.+++.| ++||+|+.+++++++++++.+.+++
T Consensus 390 y~~g~d~~~d~a---i~~~~~i-~~fL~Q~~~~~~~~~~~~~~l~~~~ 433 (434)
T PRK08472 390 YQKGNDKELDEA---ISKKEFM-EQFLKQNPNELFPFEQTFEQLEEIL 433 (434)
T ss_pred ccCCCCHHHHHH---HHhHHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 98 988877765 4467778 9999999999999999999887765
No 17
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=99.96 E-value=1.8e-30 Score=224.19 Aligned_cols=115 Identities=22% Similarity=0.304 Sum_probs=102.7
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++++||||||||||+||++||||||||+.|+||+|+.+++ ++|+++++ ++++.|++.++|+++|+
T Consensus 313 ~~dpi~d~~~~ilDG~IvLsr~la~~g~yPAIDvl~S~SR~~~~~~~-----~~h~~~a~~~r~~la~y~e~e~li~~G~ 387 (433)
T PRK07594 313 MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS-----HEHRQLAAILRRCLALYQEVELLIRIGE 387 (433)
T ss_pred CCCchHHHhhhhcceEEEEcHHHHhCCCCCccCCcccccccchhhCC-----HHHHHHHHHHHHHHHcchHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999877 49999995 56777777788889999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL 124 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll 124 (154)
|+ |.|+..|.++. +.+.| ++||+|+..++++++++++.+..++
T Consensus 388 y~~g~d~~~d~ai~---~~~~i-~~fl~Q~~~~~~~~~~~~~~l~~~~ 431 (433)
T PRK07594 388 YQRGVDTDTDKAID---TYPDI-CTFLRQSKDEVCGPELLIEKLHQIL 431 (433)
T ss_pred CCCCCCHHHHHHHH---hhHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 98 98888888765 45556 9999999999999999999887765
No 18
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=99.96 E-value=5.8e-30 Score=222.52 Aligned_cols=128 Identities=20% Similarity=0.275 Sum_probs=113.8
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV 79 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~ 79 (154)
++|||+|++++||||||||||+||++||||||||+.|+||+| +.+++ ++|.++++++++.|+++++++++.+..
T Consensus 305 ~~dPI~d~~~~ilDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~-----~~h~~~a~~~r~~la~y~e~e~li~i~ 379 (461)
T PRK12597 305 LTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDPLVVG-----ERHYDAAIEVKRILQRYKELEDVIAIL 379 (461)
T ss_pred CCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccccccccccCC-----HHHHHHHHHHHHHHHhhhhHHHHHHHc
Confidence 589999999999999999999999999999999999999999 67777 499999998888888888888888876
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCC----------CCCCCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596 80 GEEALTPDDLLYLEFLTKFEKNFVSQGN----------YENRTVYESLDIGWQLLRIFPKEMLKRIPAS 138 (154)
Q Consensus 80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~----------~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~ 138 (154)
|.+++++++...+.+++.| +.||+|+. .+.++++++++.+++++. ++++.+|+.
T Consensus 380 gy~~l~~~~d~~i~~~~~i-~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~----g~~~~~~~~ 443 (461)
T PRK12597 380 GIDELSAEDKIIVKRARQL-QRFLTQPFFVTEAFTGEPGVSVPLEETLDSCERILN----GEYDDWSEE 443 (461)
T ss_pred CCccCCHHHHHHHHhHHHH-HHHhCCCcchhhcccCCCCcccCHHHHHHHHHHHhC----CCccCCCHH
Confidence 7667999999999999999 89999999 678999999998888863 466777765
No 19
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=99.96 E-value=2.6e-30 Score=223.47 Aligned_cols=116 Identities=27% Similarity=0.379 Sum_probs=105.6
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHH---HHHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS---NQLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a---~~~~~~y~~~~eL~~ig~ 77 (154)
+||||+|++++|+||||||||+||++||||||||+.|+||+|+.++++ +|.+++ +++++.|++.++++++|.
T Consensus 318 ~~dpi~d~~~~i~Dg~ivLsr~La~~g~~PAIDvl~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~edli~lg~ 392 (442)
T PRK08927 318 HNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDP-----EENPLVRRARQLMATYADMEELIRLGA 392 (442)
T ss_pred CCCchhhhhhccccEEEEEcHHHHhCCCCCccCCcccccccccccCCH-----HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 689999999999999999999999999999999999999999998875 677766 589999999999999999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR 125 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~ 125 (154)
|. |.|+..|.++. +.+.| +.||+|+.+++++++++++.+|++++
T Consensus 393 y~~g~d~~~d~ai~---~~~~i-~~fL~Q~~~e~~~~~~~~~~l~~l~~ 437 (442)
T PRK08927 393 YRAGSDPEVDEAIR---LNPAL-EAFLRQGKDEATSLAEGYARLAQILG 437 (442)
T ss_pred CcCCCCHHHHHHHH---ccHHH-HHhcCCCCCCCCCHHHHHHHHHHHhc
Confidence 97 99999888855 45557 89999999999999999999998874
No 20
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=99.96 E-value=6.2e-30 Score=224.35 Aligned_cols=135 Identities=29% Similarity=0.313 Sum_probs=121.5
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
+||||||++++||||||||||+||++||||||||+.|+||+|+.++. ++|++++++++..|++++++.++.++ |
T Consensus 326 ~s~pI~d~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y~e~~~l~~~-g 399 (502)
T PRK09281 326 VSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGGAAQI-----KAMKKVAGTLRLDLAQYRELEAFAQF-G 399 (502)
T ss_pred CCCcchHhhhcccceEEEEcHHHHhCCCCCccCCcccccccCCccCC-----HHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 58999999999999999999999999999999999999999999876 49999999999999999999999887 5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH----HHhhCChHhhcCCChhHHHhh
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQ----LLRIFPKEMLKRIPASTLAEF 143 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~----ll~~~~~~~~~~i~~~~i~~~ 143 (154)
..+++++...+.+++.| +.||+|+.++++++++++..+|. +|..++.+++..++..+++.+
T Consensus 400 -~~l~~~~~~~l~~~~~i-~~fL~Q~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~i~~~~~~~~~~l 464 (502)
T PRK09281 400 -SDLDEATRAQLERGQRL-VELLKQPQYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFEAELLAYL 464 (502)
T ss_pred -cCCCHHHHHHHHHHHHH-HHHhCCCCCCCCCHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHH
Confidence 66889999999999999 79999999999999999999998 555667777777777777654
No 21
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=99.96 E-value=7.5e-30 Score=221.58 Aligned_cols=128 Identities=23% Similarity=0.348 Sum_probs=111.5
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV 79 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~ 79 (154)
++|||+|++++||||||||||+||++||||||||+.|+||+| +.+++ ++|.++++++++.|++++++.++....
T Consensus 306 ~~dPI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~-----~~~~~~a~~~r~~la~y~e~e~li~i~ 380 (463)
T PRK09280 306 LTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLIVG-----EEHYDVAREVQQILQRYKELQDIIAIL 380 (463)
T ss_pred CCCcchHhhhhhcceEEEEcHHHHhCCCCCccCCccccccccccccCC-----HHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 589999999999999999999999999999999999999999 56655 599999998888888888888877766
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCC----------CCCCCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596 80 GEEALTPDDLLYLEFLTKFEKNFVSQGN----------YENRTVYESLDIGWQLLRIFPKEMLKRIPAS 138 (154)
Q Consensus 80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~----------~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~ 138 (154)
|.++++|.+...+.+++.| +.||+|+. .+.++++++++.+.+++. |+++.+|+.
T Consensus 381 gy~~~sd~~d~ai~~~~~i-~~fL~Q~~~~~~~ft~~~~~~~~~~~~~~~l~~i~~----g~~~~~~~~ 444 (463)
T PRK09280 381 GMDELSEEDKLTVARARKI-QRFLSQPFFVAEQFTGSPGKYVPLKDTIRGFKEILE----GEYDHLPEQ 444 (463)
T ss_pred CCccCCHHHHHHHHhhHHH-HHhccCCcchhhcccCCCCcccCHHHHHHHHHHHhC----CCccCCCHH
Confidence 6678888888899999999 89999999 899999999998887763 455566554
No 22
>PRK06936 type III secretion system ATPase; Provisional
Probab=99.96 E-value=3.3e-30 Score=222.68 Aligned_cols=115 Identities=26% Similarity=0.394 Sum_probs=99.2
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++ +|.++++ ++++.|++.++++++|.
T Consensus 320 ~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~-----~~~~~a~~~r~~la~y~e~e~li~iG~ 394 (439)
T PRK06936 320 MTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSK-----EHKTWAGRLRELLAKYEEVELLLQIGE 394 (439)
T ss_pred CCcchHHHhhhhcceEEEECHHHHhCCCCCccCCcccccccchhhCCH-----HHHHHHHHHHHHHHcchHHHHHHHhcC
Confidence 689999999999999999999999999999999999999999998774 9999996 56666666677777888
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL 124 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll 124 (154)
|. |.|+..|.++. +.+.| ++||+|+.++++++++++..+..++
T Consensus 395 y~~g~d~~~d~ai~---~~~~i-~~fL~Q~~~~~~~~~~~~~~l~~~~ 438 (439)
T PRK06936 395 YQKGQDKEADQAIE---RIGAI-RGFLRQGTHELSHFNETLNLLETLT 438 (439)
T ss_pred ccCCCCHHHHHHHH---hHHHH-HHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 87 88877776543 45567 9999999999999999999887765
No 23
>PRK06820 type III secretion system ATPase; Validated
Probab=99.96 E-value=5.5e-30 Score=221.58 Aligned_cols=115 Identities=21% Similarity=0.368 Sum_probs=102.2
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHH---HHHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS---NQLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a---~~~~~~y~~~~eL~~ig~ 77 (154)
|+|||+|++++||||||||||+||++||||||||+.|+||+|+.++++ +|.+++ +++++.|++.++|+++|.
T Consensus 321 ~~dpI~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~~~li~~G~ 395 (440)
T PRK06820 321 MNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA-----GQLAMAQKLRRMLACYQEIELLVRVGE 395 (440)
T ss_pred CCCcchhhhccccceEEEECHHHHhCCCCCccCCcccccccchhhCCH-----HHHHHHHHHHHHHHhhhHHHHHHHhhC
Confidence 689999999999999999999999999999999999999999998875 777777 478888888888888999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL 124 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll 124 (154)
|. |.|+..|.. +.+++.| ++||+|+.++.++++++++.+|+++
T Consensus 396 y~~g~d~~~d~~---i~~~~~i-~~fL~Q~~~e~~~~~~~~~~l~~~~ 439 (440)
T PRK06820 396 YQAGEDLQADEA---LQRYPAI-CAFLQQDHSETAHLETTLEHLAQVV 439 (440)
T ss_pred ccCCCCHHHHHH---HHhhHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 98 877765554 4466667 9999999999999999999999886
No 24
>PRK09099 type III secretion system ATPase; Provisional
Probab=99.96 E-value=6.7e-30 Score=221.17 Aligned_cols=115 Identities=23% Similarity=0.341 Sum_probs=100.3
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHH---HHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQ---LYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~---~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+|+.+++ ++|.+++++ +++.|++.++++++|.
T Consensus 321 ~~dpI~d~~~~i~DG~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~-----~~~~~~a~~lr~~la~y~e~e~li~iG~ 395 (441)
T PRK09099 321 GSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVP-----REHVQAAGRLRQLLAKHREVETLLQVGE 395 (441)
T ss_pred cCCcchhhhheecceEEEEcHHHHhCCCCCccCCccccCccchhcCC-----HHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 58999999999999999999999999999999999999999999877 499999964 5566666666677777
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL 124 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll 124 (154)
|. |.|+++|+++. +++.| ++||+|+.++++++++++..+..++
T Consensus 396 y~~g~d~~~d~~i~---~~~~i-~~fL~Q~~~~~~~~~~t~~~l~~~~ 439 (441)
T PRK09099 396 YRAGSDPVADEAIA---KIDAI-RDFLSQRTDEYSDPDATLAALAELS 439 (441)
T ss_pred ccCCCChhHHHHHH---HHHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 77 99999998744 67778 8999999999999999999887765
No 25
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=99.96 E-value=5.4e-30 Score=221.81 Aligned_cols=115 Identities=25% Similarity=0.424 Sum_probs=104.7
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHH---HHHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS---NQLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a---~~~~~~y~~~~eL~~ig~ 77 (154)
|+|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++ +|.+.+ +++++.|++.++|+++|+
T Consensus 335 ~~dpi~d~~~~i~dg~ivLsr~la~~g~yPAID~l~S~SR~~~~~~~~-----~~~~~~~~~r~~l~~Y~~~~dli~ig~ 409 (455)
T PRK07960 335 QQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDE-----QHYARVRQFKQLLSSFQRNRDLVSVGA 409 (455)
T ss_pred CCcchHHHhhhhcceEEEECHHHHhCCCCCccCcCcccCcCccccCCH-----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999999999999998875 777776 589999999999999999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL 124 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll 124 (154)
|. |.|++.|.+... .+.| +.||+|+.++..+++++++.+.+++
T Consensus 410 y~~G~d~~~D~ai~~---~~~i-~~fl~Q~~~e~~~~~~~~~~l~~~~ 453 (455)
T PRK07960 410 YAKGSDPMLDKAIAL---WPQL-EAFLQQGIFERADWEDSLQALERIF 453 (455)
T ss_pred ccCCCCHHHHHHHHh---HHHH-HHHhCCCCCCCcCHHHHHHHHHHhh
Confidence 97 999998887654 3567 9999999999999999999887765
No 26
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=99.96 E-value=7.4e-30 Score=219.82 Aligned_cols=114 Identities=25% Similarity=0.393 Sum_probs=101.4
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++++||||||||||+||++||||||||+.|+||+|+.++++ +|++++. ++++.|++.++++++|.
T Consensus 300 ~~dpi~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~~~~~~~g~ 374 (418)
T TIGR03498 300 HNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWSP-----EERKLVRRLRALLARYEETEDLIRLGA 374 (418)
T ss_pred CCCcchhhhheeeeeEEEECHHHHhCCCCCccCCcccccccchhhcCH-----HHHHHHHHHHHHHHhhHHHHHHHHhhC
Confidence 689999999999999999999999999999999999999999998885 8999986 78888888888888888
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQL 123 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~l 123 (154)
|+ |.|+..|++ +.+++.| ++||+|+.+++++++++++.+.++
T Consensus 375 y~~g~d~~~d~a---i~~~~~i-~~fl~Q~~~~~~~~~~~~~~l~~~ 417 (418)
T TIGR03498 375 YRKGSDPELDEA---IRLVPKI-YEFLTQGPDEPTSLQDPFADLAAI 417 (418)
T ss_pred CcCCCCHHHHHH---HHhHHHH-HHHhCCCCCCCCCHHHHHHHHHhh
Confidence 87 777776665 4466777 999999999999999999987765
No 27
>PRK08149 ATP synthase SpaL; Validated
Probab=99.96 E-value=1e-29 Score=219.28 Aligned_cols=115 Identities=23% Similarity=0.299 Sum_probs=102.3
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+|+.+++ ++|+++++ ++++.|++.++++++|+
T Consensus 309 ~~dpi~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~-----~~~~~~a~~~r~~l~~y~e~e~li~~G~ 383 (428)
T PRK08149 309 EPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVTD-----PKHRQLAAAFRKLLTRLEELQLFIDLGE 383 (428)
T ss_pred CCCCchhhhheeccEEEEEcHHHHhCCCCCcccCccccccchhhhcC-----HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999999999999877 48999985 67777888888888899
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL 124 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll 124 (154)
|+ |.|+..|.++. +++.| +.||+|+.++++++++++..+.+++
T Consensus 384 y~~g~~~~~d~ai~---~~~~i-~~fl~Q~~~~~~~~~~~~~~l~~~~ 427 (428)
T PRK08149 384 YRRGENADNDRAMD---KRPAL-EAFLKQDVAEKSSFSDTLERLNEFA 427 (428)
T ss_pred CCCCCCHHHHHHHH---hHHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 96 88888887744 56677 9999999999999999999887764
No 28
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=99.96 E-value=3e-29 Score=218.79 Aligned_cols=128 Identities=23% Similarity=0.338 Sum_probs=110.8
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHH-HHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRL-MKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV 79 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~-~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~ 79 (154)
+||||+|++++||||||||||+||++||||||||+.|+||+ |+.+++ ++|.++++++++.|++++++.++.+..
T Consensus 330 ~tdPI~d~~~silDGhIvLsr~La~~G~yPAIDvl~SvSR~~~~~~v~-----~~h~~~a~~~r~~la~y~e~e~li~~~ 404 (494)
T CHL00060 330 LTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVG-----EEHYETAQRVKQTLQRYKELQDIIAIL 404 (494)
T ss_pred CCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCCccchhhhcccccCC-----HHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999 677766 499999998888888888888888776
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596 80 GEEALTPDDLLYLEFLTKFEKNFVSQGNY----------ENRTVYESLDIGWQLLRIFPKEMLKRIPAS 138 (154)
Q Consensus 80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~----------~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~ 138 (154)
|.+++++++...+.+++.| +.||+|++| +.+++++++..+..++. |.++.+|++
T Consensus 405 g~~~ls~~~~~~i~~~~~i-~~fL~Q~~f~~e~ft~~~~~~~~~~~~~~~l~~i~~----g~~~~~~~~ 468 (494)
T CHL00060 405 GLDELSEEDRLTVARARKI-ERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILS----GELDGLPEQ 468 (494)
T ss_pred CcccCCHHHHHHHHhHHHH-HHHhcCCcchhhcccCCCCcccCHHHHHHHHHHHhC----CCccCCCHH
Confidence 7678889899999999999 899999955 88999999998777753 345555543
No 29
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=99.96 E-value=1.4e-29 Score=218.44 Aligned_cols=115 Identities=28% Similarity=0.422 Sum_probs=100.6
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+|+.+++ ++|.++++ ++++.|++.++++++|.
T Consensus 303 ~~~pi~~~~~~i~dg~i~Lsr~la~~g~yPAId~~~S~SR~~~~~~~-----~~~~~~a~~~~~~l~~y~e~~~li~~g~ 377 (422)
T TIGR02546 303 MNDPIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVMSQVVS-----TEHRRAAGKLRRLLATYKEVELLIRLGE 377 (422)
T ss_pred CCCCchhhhhccccEEEEEcHHHHhCCCCCccCCccccccchhhhCC-----HHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999876 48999986 56666666667777788
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL 124 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll 124 (154)
|. |.|++.|.++.. ++.| ++||+|+.++.+++++++..++.++
T Consensus 378 y~~g~d~~~d~~i~~---~~~i-~~fl~Q~~~~~~~~~~~~~~l~~~~ 421 (422)
T TIGR02546 378 YQPGSDPETDDAIDK---IDAI-RAFLRQSTDEYSPYEETLEQLHALV 421 (422)
T ss_pred CcCCCCHHHHHHHHh---HHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 87 999988877554 5557 8999999999999999999988775
No 30
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=99.96 E-value=5.4e-29 Score=217.52 Aligned_cols=131 Identities=22% Similarity=0.266 Sum_probs=116.1
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
++|||||++++||||||||||+||++||||||||+.|+||+|+.++. ++|++++++++..|++++++..+.++ |
T Consensus 326 ~s~pI~d~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y~e~e~~~~~-G 399 (497)
T TIGR03324 326 ISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQL-----AAYRAVAGDLKLAYAQFEELETFARF-G 399 (497)
T ss_pred CCCcchHhheeccceEEEEcHHHHhCCCCCcCCCccccccCCccccC-----HHHHHHHHHHHHHHHHHHHHHHHHHh-h
Confidence 58999999999999999999999999999999999999999999876 49999999988888888888888777 6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF 143 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~ 143 (154)
.+ ++++....+.+++.| ++||+|+.++++++++++..+..+ ..+.++.+|.+-|.+|
T Consensus 400 ~~-ld~~~~~~i~~~~~i-~~fL~Q~~~~~~~~~~~~~~l~~~----~~g~~d~~~~~~v~~~ 456 (497)
T TIGR03324 400 AR-LDENTRKTIEHGRRI-RACLKQTQSSPLTVPQQIAILLAL----TNGLFDGVDLDAMPEA 456 (497)
T ss_pred hh-cCHHHHHHHHhHHHH-HHHhCCCCCCCCCHHHHHHHHHHH----hcCCCCCCCHHHHHHH
Confidence 44 888888999999999 999999999999999998876654 4566778888877776
No 31
>PRK06315 type III secretion system ATPase; Provisional
Probab=99.96 E-value=1.6e-29 Score=218.86 Aligned_cols=115 Identities=21% Similarity=0.329 Sum_probs=103.3
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++ +|.++++ ++++.|++.++|+++|.
T Consensus 323 ~~dpi~d~~~~i~dg~ivLsr~la~~g~~Paidv~~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~e~li~~g~ 397 (442)
T PRK06315 323 MNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPE-----EQRRIIGKAREVLAKYKANEMLIRIGE 397 (442)
T ss_pred CCcccHHHhhhhcceEEEEeccHHHcCCCCCccchhhhcccchhcCCH-----HHHHHHHHHHHHHHhhhhhHHHHHhcC
Confidence 689999999999999999999999999999999999999999998874 8999985 68889999999999999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL 124 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll 124 (154)
|. |.|+..|.++. +++.| ++||+|+.+++++++++++.+.+++
T Consensus 398 y~~g~d~~~d~ai~---~~~~i-~~fL~Q~~~e~~~~~~~~~~l~~~~ 441 (442)
T PRK06315 398 YRRGSDREVDFAID---HIDKL-NRFLKQDIHEKTNYEEAAQQLRAIF 441 (442)
T ss_pred CcCCCCHHHHHHHH---HHHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 98 87777666644 66667 9999999999999999999887765
No 32
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=99.96 E-value=1e-28 Score=216.30 Aligned_cols=132 Identities=23% Similarity=0.289 Sum_probs=115.1
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
++|||||+++|||||||||||+||++||||||||+.|+||+|+.++. ++|++++++++..|++++++..+.++ |
T Consensus 326 ~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y~e~e~~~~~-G 399 (502)
T PRK13343 326 LSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVGGKAQH-----PAIRKESGRLRLDYAQFLELEAFTRF-G 399 (502)
T ss_pred CCCcchhhhhcccceEEEECHHHHhCCCCCccCCccchhccCccccC-----HHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 58999999999999999999999999999999999999999999876 49999999888888888888887776 4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhC
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFY 144 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~ 144 (154)
.+ ++++....+.+++.| ++||+|+.++++++++++..+..+ .++.++.+|.+-|.+|.
T Consensus 400 ~~-ld~~~~~~i~~~~~i-~~~L~Q~~~~~~~~~~~~~~l~~~----~~g~~~~~~~~~i~~~~ 457 (502)
T PRK13343 400 GL-LDAGTQKQITRGRRL-RELLKQPRFSPLSVEEQIALLYAL----NEGLLDAVPLANIQAFE 457 (502)
T ss_pred hh-cCHHHHHHHHHHHHH-HHHhcCCCCCCCCHHHHHHHHHHH----hcCCccCCCHHHHHHHH
Confidence 43 777777888999999 889999999999999888866654 45677888888887773
No 33
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=99.96 E-value=3.7e-29 Score=215.28 Aligned_cols=114 Identities=28% Similarity=0.499 Sum_probs=101.8
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+|+.+++ ++|.++++ ++++.|++.++++++|.
T Consensus 295 ~~dpi~~~~~si~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~~~-----~~~~~~a~~~r~~l~~y~e~~~li~~g~ 369 (413)
T TIGR03497 295 MNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVMNEIVS-----EEHKELAGKLRELLAVYKEAEDLINIGA 369 (413)
T ss_pred CCCcchhhccccccEEEEECHHHHhCCCCCccCCccccccCccccCC-----HHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999877 49999986 47888888888999999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQL 123 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~l 123 (154)
|. |.|+..|.++. +++.| +.||+|+.+++++++++++.+.++
T Consensus 370 ~~~g~d~~~~~~i~---~~~~i-~~fl~Q~~~~~~~~~~~~~~l~~~ 412 (413)
T TIGR03497 370 YKRGSNPKIDEAIR---YIEKI-NSFLKQGIDEKFTFEETVQLLKTL 412 (413)
T ss_pred cccCCCHHHHHHHH---HHHHH-HHHhCCCCCCCCCHHHHHHHHHhh
Confidence 99 88877777655 55557 999999999999999999977665
No 34
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=99.96 E-value=3.8e-29 Score=215.11 Aligned_cols=110 Identities=27% Similarity=0.496 Sum_probs=99.5
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+++.++++ +|.++++ ++++.|++.++++++|.
T Consensus 297 ~~dpi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~~~l~~~g~ 371 (411)
T TIGR03496 297 QQDPIADAARAILDGHIVLSRELAEQGHYPAIDILASISRVMPDVVSP-----EHRQAARRFKQLLSRYQENRDLISIGA 371 (411)
T ss_pred CCCcchhhhcccccEEEEEchhHHhCCCCCccCCCcccccchhhhCCH-----HHHHHHHHHHHHHHHhHHHHHHHHhcC
Confidence 689999999999999999999999999999999999999999998774 9999996 78888888889999999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDI 119 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~ 119 (154)
|+ |.|++.|.+ +.+++.| +.||+|+.+++.+++++++.
T Consensus 372 y~~g~d~~~d~~---i~~~~~i-~~fl~Q~~~~~~~~~~~~~~ 410 (411)
T TIGR03496 372 YQAGSDPELDQA---IALYPRI-EAFLQQGMRERASFEESLEA 410 (411)
T ss_pred CcCCCCHHHHHH---HHHHHHH-HHHhCCCCCCCCCHHHHHhh
Confidence 97 888776654 5678888 99999999999999999874
No 35
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=99.95 E-value=5e-29 Score=232.25 Aligned_cols=125 Identities=16% Similarity=0.263 Sum_probs=113.3
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccC---cHHHHHHHHHHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMT---RKDHSDVSNQLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~---~~~~~~~a~~~~~~y~~~~eL~~ig~ 77 (154)
|+|||||+|++|+||||+|||+||++||||||||+.|+||+|+.+ ++||. .++|.+++++++++|+++++++++.+
T Consensus 828 ~s~Pv~~~~~~i~dg~i~L~~~La~~g~~PAId~l~S~Sr~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~el~~~i~ 906 (1017)
T PRK14698 828 FSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAV-KDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVR 906 (1017)
T ss_pred CCCcHHHHHHHHhCcEEecCHHHHhCCCCCCcCcccchhhhcccc-cchhccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999985 55664 37999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhh
Q psy5596 78 VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRI 126 (154)
Q Consensus 78 ~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~ 126 (154)
++|.+.+++.|+..+..+++|++.||+|++|+++|..++++++..+|..
T Consensus 907 l~g~~~l~~~d~~~~~~~~~i~e~fL~Q~~~~~~d~~~~~~~~~~~l~~ 955 (1017)
T PRK14698 907 IVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRV 955 (1017)
T ss_pred hcCCCCCCHHHHHHHHHhHHHHhccCCCCCCCccccCCCHHHHHHHHHH
Confidence 9998899999999999999998899999999997777777776666553
No 36
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=99.95 E-value=7.6e-29 Score=214.68 Aligned_cols=115 Identities=17% Similarity=0.266 Sum_probs=103.6
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++ +|+++++ ++++.|++.++|+++|.
T Consensus 324 ~~dpI~d~~~~i~Dg~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~~-----~~~~~a~~~r~~la~y~e~e~li~ig~ 398 (450)
T PRK06002 324 HNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHAWTP-----EQRKLVSRLKSMIARFEETRDLRLIGG 398 (450)
T ss_pred CCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccCcccccccCH-----HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 589999999999999999999999999999999999999999998764 8998885 67777888888899999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR 125 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~ 125 (154)
|. |+|+..|+++.. .+.| ++||+|+..++++ ++++..+.++++
T Consensus 399 y~~G~d~~~D~ai~~---~~~i-~~fL~Q~~~~~~~-~~~~~~l~~~~~ 442 (450)
T PRK06002 399 YRAGSDPDLDQAVDL---VPRI-YEALRQSPGDPPS-DDAFADLAAALK 442 (450)
T ss_pred cccCCChHHHHHHHh---HHHH-HHHhCCCCCCCCC-HHHHHHHHHHHh
Confidence 99 999999998665 5557 9999999999999 999998888875
No 37
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=99.95 E-value=2.4e-28 Score=214.32 Aligned_cols=131 Identities=27% Similarity=0.312 Sum_probs=112.8
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
++|||||++++||||||||||+||++||||||||+.|+||+|+.++. ++|.+++++++..|++++++.++.++ |
T Consensus 325 ~s~pI~~~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y~e~~~l~~~-g 398 (501)
T TIGR00962 325 VSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQI-----KAMKQVAGSLRLELAQYRELEAFSQF-A 398 (501)
T ss_pred CCCcchHhhhhhcceEEEEcHhHHhCCCCCccCCccchhccCccccC-----HHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 58999999999999999999999999999999999999999999876 49999999999999999999999988 5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF 143 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~ 143 (154)
.++++++...+.+++.| +.||+|+.++++++++++..++.+ ..|.++.+|.+-+..|
T Consensus 399 -~~ld~~~~~~l~~~~~i-~~fL~Q~~~~~~~~~~q~~~l~a~----~~G~l~~v~~~~i~~~ 455 (501)
T TIGR00962 399 -SDLDEATKAQLERGKRL-VELLKQPQYKPLPVEEQVVILYAG----TKGYLDDIPVDKVRKF 455 (501)
T ss_pred -ccCCHHHHHHHHHHHHH-HHHhcCCCCCCcCHHHHHHHHHHH----hcCCcccccHHHHHHH
Confidence 56888888899999999 889999999999988887655533 3445556665555544
No 38
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.95 E-value=1.6e-28 Score=212.00 Aligned_cols=115 Identities=22% Similarity=0.366 Sum_probs=101.6
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
|+|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++ +|+++++ ++++.|++.++++++|.
T Consensus 313 ~~dpI~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~~-----~~~~~a~~~r~~la~y~e~e~~i~~g~ 387 (432)
T PRK06793 313 LNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSP-----NHWQLANEMRKILSIYKENELYFKLGT 387 (432)
T ss_pred CCCcchHHhhhhcceEEEEcHHHHhCCCCCccCCCcccCcCccccCCH-----HHHHHHHHHHHHHHhChHHHHHHHhCC
Confidence 689999999999999999999999999999999999999999998774 8999884 68888888888899999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQL 123 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~l 123 (154)
|. |.++..|.++.. +.+.| +.||+|+..++++++++++.+.++
T Consensus 388 y~~g~~~~~d~ai~~--~~~~i-~~fl~Q~~~~~~~~~~~~~~l~~~ 431 (432)
T PRK06793 388 IQENAENAYIFECKN--KVEGI-NTFLKQGRSDSFQFDDIVEAMHHI 431 (432)
T ss_pred ccCCCCHHHHHHHHH--hHHHH-HHHhCCCCCCCCCHHHHHHHHHhh
Confidence 98 888887777551 34456 999999999999999999977654
No 39
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=99.95 E-value=1.3e-27 Score=208.22 Aligned_cols=131 Identities=23% Similarity=0.236 Sum_probs=111.9
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
++|||||++++||||||||||+||++||||||||+.|+||+|+.++.+ +|++++.+++..|++++++..+.++.
T Consensus 305 ~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRvg~~aq~~-----~~~~~a~~lr~~la~y~e~e~~~~~~- 378 (485)
T CHL00059 305 VSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIK-----AMKQVAGKLKLELAQFAELEAFAQFA- 378 (485)
T ss_pred CCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCcccchhcCCchhhcH-----HHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 589999999999999999999999999999999999999999998774 99999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF 143 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~ 143 (154)
..++++....+.+++.| +.||+|+.++++++++++..++.. .+|.++.+|.+-+..|
T Consensus 379 -~~~d~~~~~~i~~~~~i-~~~L~Q~~~~~~~~~e~~~~l~a~----~~g~l~~~~~~~v~~~ 435 (485)
T CHL00059 379 -SDLDKATQNQLARGQRL-RELLKQSQSAPLTVEEQVATIYTG----TNGYLDSLEIGQVRKF 435 (485)
T ss_pred -cCCCHHHHHHHHhHHHH-HHHhcCCCCCCCCHHHHHHHHHHh----ccCCcCccCHHHHHHH
Confidence 34555555567788888 999999999999999988765533 4556677777766665
No 40
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=99.94 E-value=1e-27 Score=207.84 Aligned_cols=115 Identities=30% Similarity=0.433 Sum_probs=98.5
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++ +|.++++ ++++.|++.++++++|.
T Consensus 321 ~~dpi~d~~~~i~dG~ivLsr~la~~~~~PAId~~~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~~~li~ig~ 395 (440)
T TIGR01026 321 MNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLMTAIVSE-----EHRRAARKFRELLSKYKDNEDLIRIGA 395 (440)
T ss_pred CCcchhhhhccccceEEEEecchhhCCccCccCCCcccccCccccCCH-----HHHHHHHHHHHHHHhhHHHHHHHHhhc
Confidence 589999999999999999999999999999999999999999998884 9999986 56666666666777777
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL 124 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll 124 (154)
|. |.|+..|.. +.+.+.| +.||+|+.+++++++++++.+..++
T Consensus 396 y~~g~d~~~d~~---i~~~~~i-~~fL~Q~~~~~~~~~~~~~~l~~~~ 439 (440)
T TIGR01026 396 YQRGSDRELDFA---IAKYPKL-ERFLKQGINEKVNFEESLQQLEEIF 439 (440)
T ss_pred cccCCCHHHHHH---HHHHHHH-HHHcCCCCCCCCCHHHHHHHHHHhh
Confidence 76 777655554 4456778 9999999999999999999887765
No 41
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=99.94 E-value=6.6e-27 Score=204.54 Aligned_cols=121 Identities=21% Similarity=0.188 Sum_probs=102.1
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
+||||||+++|||||||||||+||++||||||||+.|+||+|+.++++ .|.++++.+...|++++++.++.++ |
T Consensus 302 is~pIpdnv~sItDGqIvLsr~L~~~G~~PAIDvl~SvSRv~~~~q~~-----~~~~~a~~~r~~la~Y~e~e~~~~~-~ 375 (507)
T PRK07165 302 ITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQSK-----TITKVAGEISKIYRAYKRQLKLSML-D 375 (507)
T ss_pred CCCcchhhhccccCeEEEEcHHHHhCCCCCCcCCccchhhccccccCH-----HHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 589999999999999999999999999999999999999999998774 8899998777777777777777766 4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHH----HHHHHhhCCh
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDI----GWQLLRIFPK 129 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~----~~~ll~~~~~ 129 (154)
. .+++++...+.+++.| ++||+|+.+++++..+.+.. .|.+|..+|.
T Consensus 376 ~-~ld~~~~~~l~~g~~i-~~~L~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 426 (507)
T PRK07165 376 Y-DLNKETSDLLFKGKMI-EKMFNQKGFSLYSYRFVLLISKLISWGLLKDVKD 426 (507)
T ss_pred H-hCCHHHHHHHHHHHHH-HHHhCCCCCCCCCHHHHHHHHHHHHhhhhhhCCc
Confidence 4 4999999999999999 99999999999987655543 3444554443
No 42
>PRK05922 type III secretion system ATPase; Validated
Probab=99.94 E-value=2.5e-27 Score=204.72 Aligned_cols=115 Identities=23% Similarity=0.286 Sum_probs=103.5
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHH---HHHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS---NQLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a---~~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++|+||||||||||+||++| |||||++.|+||+|+.++++ +|++++ +++++.|++.++++++|.
T Consensus 314 ~~dpi~d~~rsilDGhIvLsr~la~~~-~PAIDvl~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~edli~~G~ 387 (434)
T PRK05922 314 HPDIFTDYLKSLLDGHFFLTPQGKALA-SPPIDILTSLSRSARQLALP-----HHYAAAEELRSLLKAYHEALDIIQLGA 387 (434)
T ss_pred CCCccccchhhhcCcEEEEcHHHHhCC-CCCcCCccccccCCccccCH-----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 369999999999999999999999988 99999999999999998874 899998 579999999999999999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR 125 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~ 125 (154)
|. |.|+..|.++...+ .| ++||+|+..+.++++++++.+.+++.
T Consensus 388 y~~g~d~~~d~a~~~~~---~i-~~fl~Q~~~~~~~~~~~~~~l~~~~~ 432 (434)
T PRK05922 388 YVPGQDAHLDRAVKLLP---SI-KQFLSQPLSSYCALHNTLKQLEALLK 432 (434)
T ss_pred CCccCCHHHHHHHHhHH---HH-HHHhCCCCCCCCCHHHHHHHHHHHHh
Confidence 98 99888888766544 45 99999999999999999998887764
No 43
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.94 E-value=1e-26 Score=201.54 Aligned_cols=116 Identities=31% Similarity=0.503 Sum_probs=105.3
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
|+|||+|++++|+||||+||++||++||||||||+.|+||+|+.++++ +|+++++ ++++.|++.++++++|.
T Consensus 316 m~e~i~d~v~~i~dG~Ivls~~la~~g~~PAIdv~~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~~~li~~g~ 390 (438)
T PRK07721 316 MNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMNHIVSP-----EHKEAANRFRELLSTYQNSEDLINIGA 390 (438)
T ss_pred CCchhhhhEEEecCEEEEEeccHHHCCCCCccCCcccccccccccCCH-----HHHHHHHHHHHHHHHhHHHHHHHHhhC
Confidence 579999999999999999999999999999999999999999998774 9999996 78999999999999999
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR 125 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~ 125 (154)
|. |.|+..|++.. +++.| +.||+|+.+++.++++++..++.+++
T Consensus 391 y~~g~~~~~d~a~~---~~~~~-~~fl~Q~~~~~~~~~~~~~~l~~~~~ 435 (438)
T PRK07721 391 YKRGSSREIDEAIQ---FYPQI-ISFLKQGTDEKATFEESIQALLSLFG 435 (438)
T ss_pred CcCCCCHHHHHHHH---hHHHH-HHHhCCCCCCCCCHHHHHHHHHHHHh
Confidence 99 87777777644 56778 99999999999999999999998864
No 44
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=99.92 E-value=8.3e-26 Score=190.76 Aligned_cols=128 Identities=22% Similarity=0.344 Sum_probs=114.1
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV 79 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~ 79 (154)
+|||.|.++.++||+.+||||++|+.|+|||||||.|.||.+ +.+++ ++|+++|+++.+.|++|++|++|+++.
T Consensus 309 lTDPapattFaHLDat~vLsR~ia~~GIyPAvDPL~StSr~l~p~ivG-----e~Hy~va~~vq~iLqrYkeLqDIIaIL 383 (468)
T COG0055 309 LTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVG-----EEHYEVAREVQSILQRYKELQDIIAIL 383 (468)
T ss_pred CCCcchhhhhhhcccceeeeHhHHhcCCCcccCcccccccccCccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999999 57777 499999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCC----------CCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596 80 GEEALTPDDLLYLEFLTKFEKNFVSQGNYEN----------RTVYESLDIGWQLLRIFPKEMLKRIPAS 138 (154)
Q Consensus 80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~----------~~~~~sl~~~~~ll~~~~~~~~~~i~~~ 138 (154)
|.|+|+++|+.++.+|++| +.||+|+++.. +++.+++.-..++ -.|+++.+|+.
T Consensus 384 GmdELseedk~~V~rArki-~~FlSQpF~vAE~FTg~pG~~V~l~dti~~fk~I----l~G~yd~~pE~ 447 (468)
T COG0055 384 GMDELSEEDKLTVARARKI-QRFLSQPFFVAEVFTGSPGKYVPLKDTIRGFKRI----LEGKYDHLPEQ 447 (468)
T ss_pred CchhcChhHHHHHHHHHHH-HHHhcCcchhhheecCCCceeeeHHHHHHHHHHH----hCCCcccCCHH
Confidence 9999999999999999999 99999999875 4455555544444 34677888875
No 45
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=99.92 E-value=2.7e-25 Score=193.17 Aligned_cols=126 Identities=20% Similarity=0.287 Sum_probs=119.8
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCc---HHHHHHHHHHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTR---KDHSDVSNQLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~---~~~~~~a~~~~~~y~~~~eL~~ig~ 77 (154)
|++||+.+|++|+..||.||++||+++|||||||+.|+|.|.+.+ ++||.. ++|..++..+++.+++..+|+++++
T Consensus 396 fSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~-~~~~~~~v~~~~~~~r~~a~~~Lq~e~elqeiv~ 474 (588)
T COG1155 396 FSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDL-RSWYDENVSPEWGALRDQAMEILQRESELQEIVQ 474 (588)
T ss_pred cCcccchheeeeeeeecccchhhhhcccCcccChHHHHHHHHHHH-HHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999984 668763 5899999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhC
Q psy5596 78 VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIF 127 (154)
Q Consensus 78 ~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~ 127 (154)
.+|.+.+++.++.++..++.|+++|||||+|+++|.+|++.++..||+.+
T Consensus 475 lVG~eal~e~~~~il~va~~ire~fLqQnafd~vD~~~~~~kq~~mm~~i 524 (588)
T COG1155 475 LVGYDALPEKEKSILDVARIIREDFLQQNAFDEIDAYCSLRKQYLMLKAI 524 (588)
T ss_pred HhCccccchHHHHHHHHHHHHHHHHHhhcccCcccccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999854
No 46
>PTZ00185 ATPase alpha subunit; Provisional
Probab=99.91 E-value=1.3e-24 Score=190.34 Aligned_cols=126 Identities=21% Similarity=0.194 Sum_probs=110.1
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
++|||||+++|||||||||||+||++||||||||+.|+||+++.++.+ .|+++|++++..|++++||..+.++ |
T Consensus 361 is~pIptnviSItDGqIvLsr~Lf~~GiyPAIDVl~SvSRvg~~aq~~-----~~k~vAg~lr~~LaqY~El~~fa~f-g 434 (574)
T PTZ00185 361 VTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSAQNV-----AMKAVAGKLKGILAEYRKLAADSVG-G 434 (574)
T ss_pred CCCcchHhhhhhcCeEEEEcHHHHhCCCCCCcCCcccccccCCccCCH-----HHHHHHHHHHHHHHHHHHHHHHHhh-c
Confidence 589999999999999999999999999999999999999999998764 8999999999999999999999987 3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF 143 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~ 143 (154)
+++.+ ..+.+++++ .+.|+|+. +.+.++.+..++. ...+.++.+|.+.|.+|
T Consensus 435 -sdld~---~~l~rG~r~-~ellkQ~~--p~~~~~qv~~l~a----~~~g~ld~~~~~~i~~~ 486 (574)
T PTZ00185 435 -SQVQT---VPMIRGARF-VALFNQKN--PSFFMNALVSLYA----CLNGYLDDVKVNYAKLY 486 (574)
T ss_pred -chhhH---HHHHhhHHH-HHHHCCCC--CCCHHHHHHHHHH----HhcCCcccCcHHHHHHH
Confidence 23333 678899999 99999997 8887777665553 34567899999999888
No 47
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=99.91 E-value=4.7e-25 Score=184.87 Aligned_cols=96 Identities=29% Similarity=0.536 Sum_probs=82.3
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~ 77 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+++.++++ +|.++++ ++++.|++.++++++|.
T Consensus 227 ~~dpi~~~~~~~~dg~ivL~r~la~~g~~PAid~~~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~~~~i~~g~ 301 (326)
T cd01136 227 LNEPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVTP-----EHKEAARKLRELLSAYQEVEDLIRIGA 301 (326)
T ss_pred CCcchHHhhhhccceEEEEcCcHHHcCCCCCcccccccccCccccCCH-----HHHHHHHHHHHHHHHhHHHHHHHHhcC
Confidence 589999999999999999999999999999999999999999998774 8999985 56666667777777777
Q ss_pred hh-cCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5596 78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQ 105 (154)
Q Consensus 78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q 105 (154)
|. |.|+..|++ +.+++.| +.||+|
T Consensus 302 y~~g~d~~~d~~---i~~~~~i-~~~l~Q 326 (326)
T cd01136 302 YKKGSDPEVDEA---IKLLPKI-EAFLKQ 326 (326)
T ss_pred CCCCCCHHHHHH---HHhHHHH-HHHhCC
Confidence 77 777755544 6678888 999998
No 48
>KOG1352|consensus
Probab=99.90 E-value=2e-24 Score=183.59 Aligned_cols=125 Identities=21% Similarity=0.282 Sum_probs=117.9
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCc--HHHHHHHHHHHHHHHccHhHHHHHhh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTR--KDHSDVSNQLYACYAIGKDVQAMKAV 78 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~--~~~~~~a~~~~~~y~~~~eL~~ig~~ 78 (154)
|+|||+.+|.+|+..||.||++||++.|||+|||+.|+|+||..+ .+||.. +++..++.+++.++++.++|.++.++
T Consensus 419 FsDPVTsATLgIvQVFWGLDKKLAQRKHFPSiNwliSYSkY~~aL-~~~Ye~~~peF~~lRtk~keilq~eedl~eivQL 497 (618)
T KOG1352|consen 419 FSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRAL-DPFYEKNYPEFVVLRTKAKEILQEEEDLSEIVQL 497 (618)
T ss_pred cCCcchhhhhheeeehhcccHHHHhhccCCccchhhhHHHHHHHH-HHHHHhcCCCccchHHHHHHHHhhhhhHHHHHHH
Confidence 689999999999999999999999999999999999999999985 567753 68888889999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhh
Q psy5596 79 VGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRI 126 (154)
Q Consensus 79 ~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~ 126 (154)
+|.+.|++.|+.+++.+..|+++|||||.|.++|.+|++-+...||+.
T Consensus 498 VGK~aL~etdKitLevaklik~DfLqQN~ys~YD~~CPfyKt~~Mlrn 545 (618)
T KOG1352|consen 498 VGKSALAETDKITLEVAKLIKDDFLQQNGYSPYDRFCPFYKTVGMLRN 545 (618)
T ss_pred hhhhhhhhcchhhHHHHHHHHHHHHhhcCCCchhhcCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999873
No 49
>KOG1350|consensus
Probab=99.88 E-value=2.4e-23 Score=173.67 Aligned_cols=132 Identities=22% Similarity=0.316 Sum_probs=115.2
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV 79 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~ 79 (154)
+|||.|..|.++||..-||||.+|+.|+|||||+|.|.||+| +.+++ ++|+++|+.+...+++|+.|++++++.
T Consensus 359 LtDPaPattFaHLDAttVLSR~iaelgIYPAVDPLDStSrimdp~ivG-----~eHY~vA~~Vqk~LQ~YKsLQDIIAIL 433 (521)
T KOG1350|consen 359 LTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVG-----EEHYNVARGVQKTLQDYKSLQDIIAIL 433 (521)
T ss_pred cCCCCccceeeccchhhhhhhhhHhcCCccccCCccccccccCccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999999 58877 499999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHH------HHHHHHHHHHhhCChHhhcCCChh
Q psy5596 80 GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVY------ESLDIGWQLLRIFPKEMLKRIPAS 138 (154)
Q Consensus 80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~------~sl~~~~~ll~~~~~~~~~~i~~~ 138 (154)
|.|+++++|+.++.++++| +.||+|++.+..-++ -+++.....|..+-.|+++.+|+.
T Consensus 434 GmDELSEeDkLTV~RARKi-qRFLSQPF~VAEvFTG~~GklV~l~~ti~gF~~iL~Ge~D~lPE~ 497 (521)
T KOG1350|consen 434 GMDELSEEDKLTVARARKI-QRFLSQPFQVAEVFTGHPGKLVPLEETIRGFKAILEGEYDHLPEQ 497 (521)
T ss_pred CchhhchhhhhhHHHHHHH-HHHHcCchhhhhhhcCCCCceecHHHHHHHHHHHhcCcccCCchh
Confidence 9999999999999999999 999999987643222 233444445555556788898875
No 50
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=99.77 E-value=1.1e-18 Score=150.17 Aligned_cols=130 Identities=26% Similarity=0.300 Sum_probs=114.3
Q ss_pred CCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhcC
Q psy5596 2 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGE 81 (154)
Q Consensus 2 tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G~ 81 (154)
+-.||+|+.||+||||+|+.+|+++|..||||+..|+||+.+.++.+ ...+++..+.-.|+++++|..+.++.
T Consensus 327 SAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGssAQ~k-----amkkvag~lrl~laqYrel~afsqf~-- 399 (504)
T COG0056 327 SAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGSAAQIK-----AMKKVAGSLRLILAQYRELEAFSQFG-- 399 (504)
T ss_pred eeecccceEEecCCcEEeehhhhhcCCCccccCCceeeccchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 45799999999999999999999999999999999999999987764 88899999999999999999999983
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596 82 EALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF 143 (154)
Q Consensus 82 d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~ 143 (154)
++|.+..+..+++++++ .+.|+|+.|.+++.++.+-.++.+ .+|.|+.+|.+-+..|
T Consensus 400 sdLd~~T~~~l~~G~r~-~ellkQ~~~~p~sv~~qv~ilya~----~~G~ld~v~v~~v~~f 456 (504)
T COG0056 400 SDLDKATRKQLERGKRL-TELLKQPQYSPLSVEEQVLILYAG----TNGYLDDVPVEKVADF 456 (504)
T ss_pred chhCHHHHHHHHccHHH-HHHhcCCCCCCccHHHHHHHHHHH----hcCcccCCcHHHHHHH
Confidence 68999999999999999 999999999999998877766544 4556677776666555
No 51
>PRK12608 transcription termination factor Rho; Provisional
Probab=99.69 E-value=2.4e-17 Score=140.43 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=59.0
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHH
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAM 75 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~i 75 (154)
|+|||.|+.++++||||||||+||++|||||||++.|.||.++.++++ +|.+.+.+++..++.+++...+
T Consensus 289 mdd~I~ee~kg~~dg~ivLsR~lA~~~~fPAIDi~~S~sR~~~~l~~~-----~~~~~~~~~R~~l~~~~~~e~~ 358 (380)
T PRK12608 289 MDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELLLDS-----KELEKVRRLRRALASRKPVEAM 358 (380)
T ss_pred CCcchHHHhcccCCCeEEECHHHHhCCCCCccCcccccCcchhhcCCH-----HHHHHHHHHHHHHHccCHHHHH
Confidence 579999999999999999999999999999999999999999999885 8888886555555444444333
No 52
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.60 E-value=7e-16 Score=132.52 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=60.2
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHH
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQA 74 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ 74 (154)
|+|||.++.++++||||||||+||++||||||||+.|.||.++.++++ +|.+.+..++..+..+.....
T Consensus 324 mdd~i~~e~kg~~~~~ivL~r~la~~~~fPAidi~~S~sR~~~~l~~~-----~~~~~~~~~r~~l~~~~~~~~ 392 (415)
T TIGR00767 324 MDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEELLLTP-----EELQKIWVLRKIISPMDSIEA 392 (415)
T ss_pred CCcchHHHhccccCCeEEECHHHHhCCCCCCcCcccccccchhhcCCH-----HHHHHHHHHHHHHHcCCcHHH
Confidence 579999999999999999999999999999999999999999999884 888888766666666544433
No 53
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=99.60 E-value=7.1e-16 Score=132.20 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=60.5
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHH
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMK 76 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig 76 (154)
|+|||.+++++++||||+|||+||++||||||||+.|.||.++.++++ +|.+.+..++..+..+++...+-
T Consensus 325 mdd~I~ee~kg~~n~~ivLdR~lA~~r~fPAIDi~~S~sR~~~~l~~~-----~~~~~~~~lR~~l~~~~~~e~~e 395 (416)
T PRK09376 325 MDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSP-----EELQKVWILRKILSPMDEVEAME 395 (416)
T ss_pred CCccHHHHHhhhcCceEeECHHHHhcCCCCccCccccccccccccCCH-----HHHHHHHHHHHHHHccCcHHHHH
Confidence 579999999999999999999999999999999999999999998884 88888876666665555444333
No 54
>PRK12678 transcription termination factor Rho; Provisional
Probab=99.46 E-value=6.5e-14 Score=124.77 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=60.3
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHH
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAM 75 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~i 75 (154)
|+|||.++.++++||||+|||+||++||||||||+.|.||.+..++++ +|.+.+.++...+..+.....|
T Consensus 572 mDd~Ifeefkgtgn~elvLsR~LAerrifPAIDv~~S~SR~ee~l~~~-----~e~~~~~~lRr~l~~~~~~~a~ 641 (672)
T PRK12678 572 MDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVNASGTRKEELLLSP-----DELAIVHKLRRVLSGLDSQQAI 641 (672)
T ss_pred cCcchHHHHhhccCceeeECHHHHhCCCCCccCCCcCccccchhhCCH-----HHHHHHHHHHHHHHcCCHHHHH
Confidence 578999999999999999999999999999999999999999999884 8888887766666655444333
No 55
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.39 E-value=2.7e-13 Score=110.17 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=56.6
Q ss_pred CCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHH
Q psy5596 2 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMK 76 (154)
Q Consensus 2 tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig 76 (154)
.||+.|+.++++||||||||+||..||||||||+.|.||+++.++++ +|+..+.++...+..++++..+-
T Consensus 173 ~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~~ll~~~-----~~~~~~~~~r~~~~~~~~~~~~~ 242 (249)
T cd01128 173 DDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELLLDP-----EELQRMWLLRRVLSDMDPIEAME 242 (249)
T ss_pred cchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccchhhCCH-----HHHHHHHHHHHHHHccChHHHHH
Confidence 46999999999999999999999999999999999999999887663 67877755444444444444443
No 56
>KOG1353|consensus
Probab=99.33 E-value=1.1e-12 Score=106.88 Aligned_cols=107 Identities=27% Similarity=0.335 Sum_probs=96.0
Q ss_pred CCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhcCC
Q psy5596 3 HPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEE 82 (154)
Q Consensus 3 dPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G~d 82 (154)
-.||.++.|| ||+|+|..+|+.+|+.||||+..|+||+.+.... ...++++..++--+++++|+..+.++ | +
T Consensus 229 ayiptnvisi-dgqi~l~t~lfy~girpainvg~svsrvgsaaq~-----kamkqvag~~klelaq~revaafaqf-g-s 300 (340)
T KOG1353|consen 229 AYIPTNVISI-DGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT-----KAMKQVAGSLKLELAQYREVAAFAQF-G-S 300 (340)
T ss_pred eecccceeee-cchhHHHHHHHHhccchhheeeeEeeeccchHHH-----HHHHHHhhhhhhHHHHHHHHHHHHHh-c-c
Confidence 4689999999 9999999999999999999999999999987544 37888889999999999999999998 4 5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHH
Q psy5596 83 ALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLD 118 (154)
Q Consensus 83 ~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~ 118 (154)
+|.......+.++.++ .+.|+|+.|.|...++.+.
T Consensus 301 dlda~tq~~l~rg~rl-tellkq~qy~p~~~e~qv~ 335 (340)
T KOG1353|consen 301 DLDAATQQLLNRGVRL-TELLKQGQYAPLAIEEQVA 335 (340)
T ss_pred cccHHHHHHHHhhhHH-HHHHhcCCCCCcchhhhee
Confidence 7878888899999999 9999999999998877653
No 57
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=99.20 E-value=1e-10 Score=84.22 Aligned_cols=69 Identities=26% Similarity=0.417 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHccHhHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC-------C-HHHHHHHHHHHHh
Q psy5596 56 SDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENR-------T-VYESLDIGWQLLR 125 (154)
Q Consensus 56 ~~~a~~~~~~y~~~~eL~~ig~~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~-------~-~~~sl~~~~~ll~ 125 (154)
++++++++..|+++++|.++.+++|.++++++++.++.+|++|++ ||+|++|+++ . ..+++...+.++.
T Consensus 1 k~v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e-~LkQ~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 77 (113)
T PF00306_consen 1 KKVAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE-FLKQNAFDPVPLEKQYVMILEETIDLFYAILR 77 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH-HT-BSTTTTTSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HcCCCCCCCCcCcchhhhHHHHHHHHHHHHHh
Confidence 367889999999999999999999999999999999999999955 9999999999 4 4444444445544
No 58
>COG1158 Rho Transcription termination factor [Transcription]
Probab=97.20 E-value=0.00054 Score=58.42 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=36.1
Q ss_pred cccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhcc
Q psy5596 5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE 48 (154)
Q Consensus 5 I~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~ 48 (154)
|-.+-.+.=..-++|||+||++++|||||+..|=.|=-..+.++
T Consensus 333 IfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRKEeLLl~~ 376 (422)
T COG1158 333 IFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELLLSP 376 (422)
T ss_pred hhhhhcCCCceEEEEhhhhhhcccccceecccCCcchHhhcCCH
Confidence 33444555566899999999999999999999999988877664
No 59
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=56.23 E-value=14 Score=32.98 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHccHhHHHHHhhh-cCCCCCHHHHHHHHHHHHH
Q psy5596 54 DHSDVSNQLYACYAIGKDVQAMKAVV-GEEALTPDDLLYLEFLTKF 98 (154)
Q Consensus 54 ~~~~~a~~~~~~y~~~~eL~~ig~~~-G~d~l~d~~~~~~~~~~~i 98 (154)
+.....+++++.|++.++|++++.|. |.++ .+..+...+....+
T Consensus 358 ~~a~~~r~~la~y~e~e~li~i~gy~~~sd~-~d~ai~~~~~i~~f 402 (463)
T PRK09280 358 DVAREVQQILQRYKELQDIIAILGMDELSEE-DKLTVARARKIQRF 402 (463)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhCCccCCHH-HHHHHHhhHHHHHh
Confidence 45667889999999999999999997 8777 78777666655444
No 60
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=49.52 E-value=14 Score=33.19 Aligned_cols=78 Identities=13% Similarity=0.004 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHccHhHHHHHhhh-cCCCCCHHHHHHHHHHHHHH-HHHh---------cCCCCCCCCHHHHHHHHHH
Q psy5596 54 DHSDVSNQLYACYAIGKDVQAMKAVV-GEEALTPDDLLYLEFLTKFE-KNFV---------SQGNYENRTVYESLDIGWQ 122 (154)
Q Consensus 54 ~~~~~a~~~~~~y~~~~eL~~ig~~~-G~d~l~d~~~~~~~~~~~i~-~~fL---------~Q~~~~~~~~~~sl~~~~~ 122 (154)
+.....+++++.|++.++++.++.|. |. +..+..+...+....+. +.|. .+...-..++...-..+++
T Consensus 382 ~~a~~~r~~la~y~e~e~li~~~g~~~ls-~~~~~~i~~~~~i~~fL~Q~~f~~e~ft~~~~~~~~~~~~~~~l~~i~~g 460 (494)
T CHL00060 382 ETAQRVKQTLQRYKELQDIIAILGLDELS-EEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSG 460 (494)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCcccCC-HHHHHHHHhHHHHHHHhcCCcchhhcccCCCCcccCHHHHHHHHHHHhCC
Confidence 45667789999999999999999997 65 88888877666654443 3333 2333223234344444455
Q ss_pred HHhhCChHhh
Q psy5596 123 LLRIFPKEML 132 (154)
Q Consensus 123 ll~~~~~~~~ 132 (154)
.+..++..++
T Consensus 461 ~~~~~~~~~~ 470 (494)
T CHL00060 461 ELDGLPEQAF 470 (494)
T ss_pred CccCCCHHHh
Confidence 5555555444
No 61
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=48.53 E-value=22 Score=31.68 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHccHhHHHHHhhh-cCCCCCHHHHHHHHHHHHHHHHHh
Q psy5596 54 DHSDVSNQLYACYAIGKDVQAMKAVV-GEEALTPDDLLYLEFLTKFEKNFV 103 (154)
Q Consensus 54 ~~~~~a~~~~~~y~~~~eL~~ig~~~-G~d~l~d~~~~~~~~~~~i~~~fL 103 (154)
+.....+++++.|++.++|++++.|. |+++ .+..+...+....+..+=.
T Consensus 357 ~~a~~~r~~la~y~e~~~li~i~g~~~lsd~-~~~~l~~~~~i~~fL~Q~~ 406 (461)
T TIGR01039 357 DVARGVQQILQRYKELQDIIAILGMDELSEE-DKLTVERARRIQRFLSQPF 406 (461)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhCCccCCHH-HHHHHHhHHHHHHHhCCCC
Confidence 45667789999999999999999998 7777 8888777666655444444
No 62
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=48.43 E-value=22 Score=31.67 Aligned_cols=46 Identities=17% Similarity=0.043 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHccHhHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q psy5596 54 DHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFE 99 (154)
Q Consensus 54 ~~~~~a~~~~~~y~~~~eL~~ig~~~G~d~l~d~~~~~~~~~~~i~ 99 (154)
+.....+++++.|++.++|++++.|...++..+..+........+.
T Consensus 357 ~~a~~~r~~la~y~e~e~li~i~gy~~l~~~~d~~i~~~~~i~~fL 402 (461)
T PRK12597 357 DAAIEVKRILQRYKELEDVIAILGIDELSAEDKIIVKRARQLQRFL 402 (461)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHcCCccCCHHHHHHHHhHHHHHHHh
Confidence 4566778999999999999999999778888888777666654443
No 63
>COG3068 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.91 E-value=44 Score=25.90 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=19.7
Q ss_pred hhhhCCCCCCCcCCCChhHHHHHhhc
Q psy5596 22 QLHNRQIYPPINVLPSLSRLMKSAIG 47 (154)
Q Consensus 22 ~LA~~g~yPAId~l~S~SR~~~~v~~ 47 (154)
+-.--|.|||||.-.-+|-+....++
T Consensus 84 d~~~ygv~PAiDAC~aLsellH~~l~ 109 (194)
T COG3068 84 DFDLYGVYPAIDACVALSELLHSRLS 109 (194)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHHh
Confidence 34456899999998888888765544
No 64
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=31.76 E-value=67 Score=28.60 Aligned_cols=44 Identities=23% Similarity=0.092 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHccHhHHHHHhhh-cCCCCCHHHHHHHHHHHHH
Q psy5596 54 DHSDVSNQLYACYAIGKDVQAMKAVV-GEEALTPDDLLYLEFLTKF 98 (154)
Q Consensus 54 ~~~~~a~~~~~~y~~~~eL~~ig~~~-G~d~l~d~~~~~~~~~~~i 98 (154)
+.....+++++.|++.++++.++.|. |+++. +..+...+....+
T Consensus 352 ~~a~~~~~~l~~y~e~~~li~~~g~~~l~~~~-~~~i~~~~~i~~f 396 (449)
T TIGR03305 352 DLAREVRQTLAQYEELKDIIAMLGLEQLSRED-RRVVNRARRLERF 396 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCccCCHHH-HHHHHHHHHHHHH
Confidence 44566788889999999999998886 66555 7666555554433
No 65
>KOG0506|consensus
Probab=31.18 E-value=46 Score=30.19 Aligned_cols=51 Identities=16% Similarity=0.358 Sum_probs=38.1
Q ss_pred cEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhH
Q psy5596 15 GQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDV 72 (154)
Q Consensus 15 GhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL 72 (154)
-||.|+++++.+=++|+|+| +||.... .+.=++|......+..+++.-++.
T Consensus 143 ~gw~LdKDlFKkcI~sSI~l---vSqALrk----qmVIPdw~~Fts~I~tIFEscke~ 193 (622)
T KOG0506|consen 143 SGWLLDKDLFKKCIFSSIVL---VSQALRK----QMVIPDWEEFTSHIDTIFESCKES 193 (622)
T ss_pred cceeecHHHHHHhhccchhH---HHHHHhc----CccCCcHHHHHHHHHHHHHHHHhc
Confidence 38999999999999999987 4666642 122248888888888887776554
No 66
>PF15581 Imm35: Immunity protein 35
Probab=29.75 E-value=63 Score=22.48 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=24.0
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhC
Q psy5596 98 FEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFY 144 (154)
Q Consensus 98 i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~ 144 (154)
|-..|++|+. +|-......+..+-.+||.++|++.+-+.+
T Consensus 16 IslsY~~q~~-------esa~~~i~~l~~lIe~eWRGl~~~qV~~kl 55 (93)
T PF15581_consen 16 ISLSYLRQGE-------ESARRTIRNLESLIEHEWRGLPEEQVLYKL 55 (93)
T ss_pred eeHHHHhcch-------hHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3467888883 222333333333334589999999887653
No 67
>PF03725 RNase_PH_C: 3' exoribonuclease family, domain 2 This Prosite family only includes Ribonuclease PH; InterPro: IPR015847 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) [], as well as in archaeal and eukaryotic RNA exosomes [, ], the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. This entry represents the phosphorolytic (PH) domain 2, which has a core 3-layer alpha/beta/alpha structure. This domain is found in bacterial/organelle PNPases and in archaeal/eukaryotic exosomes []. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 1E3H_A 1E3P_A 2NN6_E 2WNR_A 3U1K_B 2BA0_H 2BA1_H 3M85_G 3M7N_H 3H1C_K ....
Probab=25.45 E-value=42 Score=21.01 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=18.4
Q ss_pred CCcccccccccccEEEechhhhhC
Q psy5596 3 HPIPDLTGYITEGQIYVDRQLHNR 26 (154)
Q Consensus 3 dPI~d~~~~ilDGhivLsr~LA~~ 26 (154)
||+...+.+++||++++|....+.
T Consensus 1 ~~~~avt~~~i~~~~v~Dpt~~Ee 24 (68)
T PF03725_consen 1 DPPVAVTVGIIDGELVVDPTAEEE 24 (68)
T ss_dssp SEEEEEEEEEETTEEEES--HHHH
T ss_pred CCeEEEEEEEECCEEEECCCHHHH
Confidence 577778889999999999988763
No 68
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=25.13 E-value=1.7e+02 Score=27.03 Aligned_cols=70 Identities=7% Similarity=-0.070 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHccHhHHHHHhhh-cCCCCCHHHHH--HHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596 54 DHSDVSNQLYACYAIGKDVQAMKAVV-GEEALTPDDLL--YLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR 125 (154)
Q Consensus 54 ~~~~~a~~~~~~y~~~~eL~~ig~~~-G~d~l~d~~~~--~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~ 125 (154)
+....++++++.|++.+++++++.|. |.+ ....-.. ...+-..+.+.++.- .++.+++++++..+..++.
T Consensus 457 ~~~~~~~~lL~~~~el~eiv~l~g~~~l~~-~d~~i~~~a~~i~e~FLqQ~a~~~-~d~~~~~~kt~~~L~~i~~ 529 (591)
T TIGR01042 457 PLRTKAKEILQEEEDLNEIVQLVGKDALAE-TDKITLEVAKLIKEDFLQQNGYTP-YDRFCPFYKTVGMMRNMIA 529 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccCCH-HHHHHHHHHHHHHHHhCCCCCCCC-ccccCCHHHHHHHHHHHHH
Confidence 67888899999999999999999999 644 3322222 232333444554443 4678899999988887765
No 69
>PLN00218 predicted protein; Provisional
Probab=23.05 E-value=42 Score=24.32 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=18.1
Q ss_pred cccEEEechhhhhCCCCCCC
Q psy5596 13 TEGQIYVDRQLHNRQIYPPI 32 (154)
Q Consensus 13 lDGhivLsr~LA~~g~yPAI 32 (154)
+.|.|.|||+...+..-|+.
T Consensus 101 lrgrwsldrkmckrkacpsl 120 (151)
T PLN00218 101 LRGRWSLDRKMCKRKACPSL 120 (151)
T ss_pred hcccchhhHHHHhhccCCcc
Confidence 68999999999999988886
No 70
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=20.54 E-value=1.5e+02 Score=23.06 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596 91 YLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR 125 (154)
Q Consensus 91 ~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~ 125 (154)
.+++-++| +..||.+..+++++.+....+..++.
T Consensus 2 LLeKtRkI-N~lLQ~~~~~~v~F~~ia~vL~dvl~ 35 (177)
T PF06018_consen 2 LLEKTRKI-NRLLQKSAGEPVDFNDIAEVLSDVLE 35 (177)
T ss_dssp HHHHHHHH-HHHHHSHTTSS--HHHHHHHHHHHHT
T ss_pred hHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHhhc
Confidence 35566777 88888888888888888877776654
Done!