Query psy5596
Match_columns 154
No_of_seqs 131 out of 1125
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 21:34:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vr4_D V-type sodium ATPase su 100.0 4.4E-39 1.5E-43 278.1 12.9 147 1-147 318-464 (465)
2 2c61_A A-type ATP synthase non 100.0 1.5E-38 5E-43 275.6 14.8 146 1-146 319-464 (469)
3 3gqb_B V-type ATP synthase bet 100.0 2E-38 6.8E-43 274.0 10.3 144 1-145 321-464 (464)
4 3mfy_A V-type ATP synthase alp 100.0 3.2E-32 1.1E-36 239.5 7.2 126 1-127 399-527 (588)
5 3vr4_A V-type sodium ATPase ca 100.0 2.5E-31 8.4E-36 234.6 7.2 141 1-142 404-554 (600)
6 3gqb_A V-type ATP synthase alp 100.0 6.7E-32 2.3E-36 237.3 3.4 126 1-127 391-519 (578)
7 2ck3_D ATP synthase subunit be 100.0 3.4E-30 1.2E-34 223.6 11.6 128 1-138 321-459 (482)
8 1fx0_B ATP synthase beta chain 100.0 1.2E-30 4E-35 227.2 8.7 128 1-138 334-472 (498)
9 2r9v_A ATP synthase subunit al 100.0 3.6E-30 1.2E-34 224.7 10.4 131 1-143 339-469 (515)
10 1sky_E F1-ATPase, F1-ATP synth 100.0 7.2E-30 2.5E-34 221.5 10.9 128 1-138 313-451 (473)
11 2ck3_A ATP synthase subunit al 100.0 3.8E-30 1.3E-34 224.6 8.6 131 1-143 334-464 (510)
12 1fx0_A ATP synthase alpha chai 100.0 5.4E-30 1.8E-34 223.5 8.4 131 1-143 327-457 (507)
13 2qe7_A ATP synthase subunit al 100.0 2.9E-30 9.8E-35 225.0 6.6 131 1-143 326-456 (502)
14 3oaa_A ATP synthase subunit al 100.0 1.8E-29 6.2E-34 219.9 10.1 131 1-143 337-467 (513)
15 2obl_A ESCN; ATPase, hydrolase 99.9 3.4E-22 1.2E-26 167.3 8.1 118 1-124 228-346 (347)
16 3l0o_A Transcription terminati 99.8 2E-20 6.7E-25 159.5 3.0 76 1-81 331-406 (427)
17 2dpy_A FLII, flagellum-specifi 99.8 6E-20 2.1E-24 157.9 4.8 118 2-125 318-436 (438)
18 3ice_A Transcription terminati 99.8 2.9E-20 1E-24 158.4 1.8 78 1-83 330-407 (422)
19 2obl_A ESCN; ATPase, hydrolase 37.7 10 0.00034 30.9 1.0 43 56-98 281-324 (347)
20 2gx5_A GTP-sensing transcripti 35.4 62 0.0021 23.9 5.0 37 89-126 11-47 (170)
21 2dpy_A FLII, flagellum-specifi 28.6 12 0.00039 31.6 -0.1 42 56-97 370-412 (438)
22 3f7c_A Protein of unknown func 27.3 9.3 0.00032 29.2 -0.8 23 26-48 89-111 (200)
23 2lkl_A Erythrocyte membrane pr 20.1 1.3E+02 0.0044 19.3 3.7 44 34-86 2-45 (81)
No 1
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=4.4e-39 Score=278.13 Aligned_cols=147 Identities=50% Similarity=0.870 Sum_probs=141.4
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++|++.++|.++++++++.|+++++|++++++.|
T Consensus 318 ~~~pI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~~~~G 397 (465)
T 3vr4_D 318 KTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKTREDHAATMNQLFAAYAQGKQAKELAVVLG 397 (465)
T ss_dssp TTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHhhhcCeEEEEcHHHHhCCCCCCCCccccchhcchhhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCCC
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRD 147 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~~ 147 (154)
.++++++++.++.++++|++.||+|+.+++.++++++..+|.+|..+|.++++++++++|++|||+.
T Consensus 398 ~d~L~~~d~~~~~~~~~~~~~fL~Q~~~e~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~ 464 (465)
T 3vr4_D 398 ESALSDIDKIYAKFAERFENEYVNQGFYTNRTITETLDLGWELLAMLPRTELKRIKDDLLDKYLPEG 464 (465)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHHHHHTTSCTTTCTTSCHHHHHHHCC--
T ss_pred CCCCCHHHHHHHHhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999887899999999999999999999999999999999999999999999974
No 2
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=1.5e-38 Score=275.62 Aligned_cols=146 Identities=56% Similarity=0.952 Sum_probs=141.3
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++||+.++|.++++++++.|+++++|+++++|.|
T Consensus 319 ~~dPI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~~~~~ig~~~~~~~~~~~a~~l~~~l~~~~eL~~i~~~~G 398 (469)
T 2c61_A 319 ITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVG 398 (469)
T ss_dssp TTSCCCCCGGGGTTEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcchHHHHhhccCcEEEEcHHHHhCCCCCccCccccccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCC
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPR 146 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~ 146 (154)
.++++|+++..+.+++.|.+.||+|+.++++++++++..+|.+|..++.+++++++++++++|||+
T Consensus 399 ~~~l~d~~~~~l~~~~~i~~~fL~Q~~~~~~~~~et~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (469)
T 2c61_A 399 KEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYHPA 464 (469)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHHHHHTTSCGGGCTTSCHHHHHHHSTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999445999999999999999999999999999999999999999999985
No 3
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=2e-38 Score=273.96 Aligned_cols=144 Identities=53% Similarity=0.943 Sum_probs=139.7
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++|++.++|.++++++++.|+++++|++++++.|
T Consensus 321 ~~~pi~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~~~~G 400 (464)
T 3gqb_B 321 RTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAIIG 400 (464)
T ss_dssp TTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGTSSTTTSCTTHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred ccCchhHHHhhhcCeEEEEcHHHHhCCCCCCcCcccchhhcchhhcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCC
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYP 145 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~ 145 (154)
.++++++++.++.++++|++.||+|+ +++.+++++++.+|++|+.+|++++++|++++|++||.
T Consensus 401 ~d~L~~~d~~~~~~~~~~~~~fL~Q~-~e~~~~~~s~~~l~~ll~~~p~~~~~~~~~~~~~~~~~ 464 (464)
T 3gqb_B 401 EDALTENDRRYLQFADAFERFFINQG-QQNRSIEESLQIAWALLSMLPQGELKRISKDHIGKYYG 464 (464)
T ss_dssp SCCCCSHHHHTTHHHHHHHHTTTCCT-TCCCCHHHHHHHHHHHHTTSCGGGCTTSCHHHHHHHCC
T ss_pred CCCCCHHHHHHHHhhHHHHHHhcCCC-CCCCCHHHHHHHHHHHHHhCCHHHHhcCCHHHHHHhcC
Confidence 99999999999999998867999999 99999999999999999999999999999999999995
No 4
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=99.97 E-value=3.2e-32 Score=239.51 Aligned_cols=126 Identities=17% Similarity=0.273 Sum_probs=117.8
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhcccc---CcHHHHHHHHHHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDM---TRKDHSDVSNQLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~---~~~~~~~~a~~~~~~y~~~~eL~~ig~ 77 (154)
++|||+++|++|+||||+|||+||++||||||||+.|+||+|+.+ ++|| +.++|.+++++++++|+++++++++.+
T Consensus 399 ~sdpi~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~i-~~~~~~~~~~~h~~~a~~~~~~La~~~el~~ii~ 477 (588)
T 3mfy_A 399 FSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAV-KDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477 (588)
T ss_dssp SSCSHHHHHHHHCSEECCBCHHHHHTTCSSCBCTTTCEETTHHHH-HHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHhccCeeecCHHHHhCCCCCCcCcccchhhhcccc-cchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999984 4455 356999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhC
Q psy5596 78 VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIF 127 (154)
Q Consensus 78 ~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~ 127 (154)
++|.|+|+++++.++.++++|++.||+|++|+++|.+|++++++.+|+.+
T Consensus 478 i~G~d~Ls~~dk~~l~~ar~i~e~fL~Q~~f~~~d~~~~~~k~~~~l~~i 527 (588)
T 3mfy_A 478 IVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVL 527 (588)
T ss_dssp HHCSTTCCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHH
T ss_pred hcCCccCCHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHHH
Confidence 99999999999999999999977999999999999999999999888754
No 5
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=99.97 E-value=2.5e-31 Score=234.55 Aligned_cols=141 Identities=21% Similarity=0.332 Sum_probs=124.0
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccC---cHHHHHHHHHHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMT---RKDHSDVSNQLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~---~~~~~~~a~~~~~~y~~~~eL~~ig~ 77 (154)
++|||+++|++|+||||+|||+||++||||||||+.|+||+|+.+ .+||+ .++|.+++++++++|+++++++++.+
T Consensus 404 ~tdPi~~~t~~i~dg~ivLsr~La~~giyPAId~l~S~SR~~~~l-~~~~~~~~~~~h~~~a~~~~~~la~~~el~~ii~ 482 (600)
T 3vr4_A 404 ISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLYSTEV-GRYMDQILQQDWSDMVTEGMRILQEEEQLNEIVR 482 (600)
T ss_dssp TTSHHHHHHHTTCCEECCBCHHHHTTTCSSCBCTTTCEETTHHHH-HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhhhhhccEEEEEhhhHHhCCCCCccCcccchhhhcccc-cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999874 35543 36999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhC---ChH---hh-cCCChhHHHh
Q psy5596 78 VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIF---PKE---ML-KRIPASTLAE 142 (154)
Q Consensus 78 ~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~---~~~---~~-~~i~~~~i~~ 142 (154)
++|.|+|+++++.++.++++|++.||+|++|+++|.+|++++++.+|+.+ ... .+ .++|-+.|..
T Consensus 483 i~G~d~Ls~~dk~~l~~a~~i~e~fL~Q~~f~~~d~~~~~~kq~~~l~~i~~~~~~~~~~~~~~~~~~~i~~ 554 (600)
T 3vr4_A 483 LVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGAYFNEIME 554 (600)
T ss_dssp HTCGGGSCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ccCCccCCHHHHHHHHHHHHHHHHhCCCCCcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999977899999999999999999999888744 111 21 3666666655
No 6
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=99.97 E-value=6.7e-32 Score=237.33 Aligned_cols=126 Identities=19% Similarity=0.301 Sum_probs=116.9
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhcccc---CcHHHHHHHHHHHHHHHccHhHHHHHh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDM---TRKDHSDVSNQLYACYAIGKDVQAMKA 77 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~---~~~~~~~~a~~~~~~y~~~~eL~~ig~ 77 (154)
++|||+++|++|+||||||||+||++||||||||+.|+||+|+.+ ++|| +.++|.+++++++++|+++++++++.+
T Consensus 391 ~tdPi~~~t~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~v-~~~~~~~~~~~h~~~a~~~~~~l~~~~el~~ii~ 469 (578)
T 3gqb_A 391 MSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSAL-DPWYRENVAEDYPELRDAISELLQREAGLQEIVQ 469 (578)
T ss_dssp TTSHHHHHHHTTCSEECCBCHHHHHHTCSSCBCTTTCEESSHHHH-HHHHHHHTCTTHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCCcchHHHhhhcCceEEECHHHHhCCCCCCcCcccchhhccccc-cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999874 3554 346999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhC
Q psy5596 78 VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIF 127 (154)
Q Consensus 78 ~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~ 127 (154)
++|.|+|+++++.++.++++|++.||+|++|+++|.+|++++++.+|+.+
T Consensus 470 i~G~d~Ls~~dk~~l~~a~~i~~~fL~Q~~f~~~d~~~~~~kq~~~l~~i 519 (578)
T 3gqb_A 470 LVGPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSMKKAYGIMKMI 519 (578)
T ss_dssp TTTGGGCCHHHHHHHHHHHHHHHHHTCCCSSSTTTTCCCHHHHHHHHHHH
T ss_pred hcCCccCCHHHHHHHHHHHHHHHHhCCCCCCCCceecCCHHHHHHHHHHH
Confidence 99999999999999999999977899999999999999999999888744
No 7
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=99.96 E-value=3.4e-30 Score=223.63 Aligned_cols=128 Identities=25% Similarity=0.341 Sum_probs=117.7
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV 79 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~ 79 (154)
++|||||++++||||||||||+||++||||||||+.|+||+| +.+++ ++|.+++++++..|+++++++++.+..
T Consensus 321 ~tdPi~d~~~~i~dG~ivLsr~La~~giyPAIDvl~S~SR~~~~~i~~-----~~~~~~a~~lr~~la~y~el~~li~i~ 395 (482)
T 2ck3_D 321 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVG-----SEHYDVARGVQKILQDYKSLQDIIAIL 395 (482)
T ss_dssp TTSHHHHHHGGGCSEEEEBCHHHHTTTCSSCBCTTSCEETTCSHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHhcCeEEEEcHHHHhCCCCCccCcccccccCCCcccCC-----HHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 589999999999999999999999999999999999999999 56766 499999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596 80 GEEALTPDDLLYLEFLTKFEKNFVSQGNY----------ENRTVYESLDIGWQLLRIFPKEMLKRIPAS 138 (154)
Q Consensus 80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~----------~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~ 138 (154)
|.+++++++...+.++++| +.||+|+++ +.+++++++..+..++. ++.+.+|++
T Consensus 396 G~~~l~~~d~~~l~~~~~i-~~fL~Q~~~v~~~f~~~~g~~~~~~~t~~~l~~il~----g~~d~~pe~ 459 (482)
T 2ck3_D 396 GMDELSEEDKLTVSRARKI-QRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILA----GEYDHLPEQ 459 (482)
T ss_dssp CGGGSCHHHHHHHHHHHHH-HHHTCCCCGGGHHHHSSCCCCCCHHHHHHHHHHHHT----TTTTTSCGG
T ss_pred CCCcCCHHHHHHHHHHHHH-HHHHcCCchHHHHhhcCccccCCHHHHHHHHHHHhc----ccccCCCHH
Confidence 9999999999999999999 889999976 88999999998888875 567788874
No 8
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=99.96 E-value=1.2e-30 Score=227.23 Aligned_cols=128 Identities=23% Similarity=0.365 Sum_probs=115.5
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHH-HhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMK-SAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV 79 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~-~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~ 79 (154)
+||||||++++||||||||||+||++||||||||+.|+||+|+ .+++ ++|++++++++..|+++++++++.++.
T Consensus 334 ~tdPi~d~~~~ilDG~ivLsR~La~~giyPAID~l~S~SR~~~~~i~~-----~~h~~~a~~lr~~la~y~el~~li~i~ 408 (498)
T 1fx0_B 334 LTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVG-----EEHYEIAQRVKETLQRYKELQDIIAIL 408 (498)
T ss_dssp SSSHHHHHHHTTCSEEEEBCSTTTTTTCSSCBCSSSCCBTTCSTTTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHhhCceEEehhhHHhCCCCceeccccccccCCCcccCC-----HHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999984 4554 599999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596 80 GEEALTPDDLLYLEFLTKFEKNFVSQGNY----------ENRTVYESLDIGWQLLRIFPKEMLKRIPAS 138 (154)
Q Consensus 80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~----------~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~ 138 (154)
|.++++++++..+.++++| +.||+|+++ +.+++++++..+..++ .++.+.+|++
T Consensus 409 G~d~ls~~d~~~l~~~~~i-~~fL~Q~~~v~e~ft~~~g~~v~~~~t~~~l~~il----~g~~d~~pe~ 472 (498)
T 1fx0_B 409 GLDELSEEDRLTVARARKI-ERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLIL----SGELDSLPEQ 472 (498)
T ss_dssp CSTTSCTTTHHHHHHHHHH-HHHTCCCCSSCTTTSCSCCCCCCHHHHHHHHHTTT----TTTTSSSCGG
T ss_pred CCCcCCHHHHHHHHHHHHH-HHHHcCCchHHHHhhcCCCcccCHHHHHHHHHHHh----cCcccCCCHH
Confidence 9999999999999999999 889999977 7788999988666554 3678888885
No 9
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=99.96 E-value=3.6e-30 Score=224.69 Aligned_cols=131 Identities=24% Similarity=0.266 Sum_probs=121.6
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++. ++|.+++++++..|++++++.++.++ |
T Consensus 339 ~s~pI~~~~~si~DGqI~Lsr~La~~g~yPAIdvl~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y~el~~~~~~-G 412 (515)
T 2r9v_A 339 ISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSRVGGSAQI-----KAMKQVAGMLRIDLAQYRELETFAQF-A 412 (515)
T ss_dssp TTSHHHHHHHHTSSEEEEBCHHHHHHTCSSCBCTTTCEEGGGTTTSC-----HHHHHHHHHHHHHHHHHHHHHTTGGG-C
T ss_pred ccccchhhhccccceEEEEchHHHhCCCCCeeccccccccCCcccCC-----HHHHHHHHHHHHHHhhhhHHHHHHHh-c
Confidence 58999999999999999999999999999999999999999998766 59999999999999999999999886 7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF 143 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~ 143 (154)
+++++++...+.+++.| +.||+|+.++++++++++..+|.+ .++.++++|.+.|.+|
T Consensus 413 -~~l~~~~~~~l~~~~~i-~~fL~Q~~~~~~~~~e~~~~l~~~----~~g~ld~i~~~~i~~~ 469 (515)
T 2r9v_A 413 -TELDPATRAQIIRGQRL-MELLKQEQYSPMPVEEQVVVLFAG----VRGYLDDLPVEEVRRF 469 (515)
T ss_dssp -SCCCHHHHHHHHHHHHH-HHHTCCCTTCCCCHHHHHHHHHHH----HTTTTTTSCGGGHHHH
T ss_pred -cCCCHHHHHHHHHHHHH-HHHhcCCCCCCCCHHHHHHHHHHH----HhhhhccccHHHHHHH
Confidence 67999999999999999 779999999999999999988876 4567899999888887
No 10
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=99.96 E-value=7.2e-30 Score=221.50 Aligned_cols=128 Identities=23% Similarity=0.336 Sum_probs=116.6
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV 79 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~ 79 (154)
++|||||++++||||||||||+||++||||||||+.|+||+| +.+++ ++|.+++++++..|+++++++++.+..
T Consensus 313 ~~dpi~~~~~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~~~~~-----~~~~~~a~~lr~~la~y~e~~~li~i~ 387 (473)
T 1sky_E 313 YTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEIVG-----EEHYQVARKVQQTLERYKELQDIIAIL 387 (473)
T ss_dssp SSSHHHHHHHTTCSEEEEBCTTHHHHTCSSCBCTTTCCBTTCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHhhcCceEEecHHHHhCCCCCccccccccccccchhcCC-----HHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 589999999999999999999999999999999999999999 45665 499999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596 80 GEEALTPDDLLYLEFLTKFEKNFVSQGNY----------ENRTVYESLDIGWQLLRIFPKEMLKRIPAS 138 (154)
Q Consensus 80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~----------~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~ 138 (154)
|.+++++++...+.+++.| +.||+|+.+ +.++++++++.++.++. ++++++|++
T Consensus 388 g~~~ls~~d~~~l~~~~~i-~~fL~Q~~~~~~~~~~~~~~~~~~~~t~~~l~~i~~----~~~~~~~~~ 451 (473)
T 1sky_E 388 GMDELSDEDKLVVHRARRI-QFFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILE----GKYDHLPED 451 (473)
T ss_dssp CSTTCTTHHHHHHHHHHHH-HHHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHHHHT----TTTTTSCGG
T ss_pred CcccCCHHHHHHHHHHHHH-HHHHcCCchHhhhhhccCCccCCHHHHHHHHHHHhc----ccccCCCHH
Confidence 9899999999999999999 789999976 56899999998887764 678888884
No 11
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=99.96 E-value=3.8e-30 Score=224.58 Aligned_cols=131 Identities=24% Similarity=0.343 Sum_probs=121.4
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
++||||+++++|+||||||||+||++||||||||+.|+||+|+.++. ++|++++++++..|++++++.++.++ |
T Consensus 334 ~s~pI~~~~~si~DgqI~Lsr~La~~gi~PAIdvl~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y~el~~~~~~-G 407 (510)
T 2ck3_A 334 VSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT-----RAMKQVAGTMKLELAQYREVAAFAQF-G 407 (510)
T ss_dssp TTSHHHHHHHHHSSEEEEBCHHHHHHTCSSCBCTTTCEESSGGGGSC-----HHHHHHHHHHHHHHHHHHHHGGGSSS-C
T ss_pred ccccchHhhhcccceEEEEehhHhhCCCCCcccchhcccccccccCC-----HHHHHHHHHHHHHHHhhhHHHHHHHh-c
Confidence 58999999999999999999999999999999999999999999866 59999999999999999999999876 7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF 143 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~ 143 (154)
+++++++...+.+++.| +.||+|+.++++++++++..+|.+ .++.++++|.+.|.+|
T Consensus 408 -~~l~~~~~~~l~~~~~i-~~fL~Q~~~~~~~~~~~~~~l~~~----~~g~l~~i~~~~i~~~ 464 (510)
T 2ck3_A 408 -SDLDAATQQLLSRGVRL-TELLKQGQYSPMAIEEQVAVIYAG----VRGYLDKLEPSKITKF 464 (510)
T ss_dssp -SSSCHHHHHHHHHHHHH-HHTTCCCSSCCCCHHHHHHHHHHH----HTTSSTTSCGGGHHHH
T ss_pred -CCCCHHHHHHHHHhHHH-HHHhcCCCCCCCCHHHHHHHHHHH----HhhhhcCCCHHHHHHH
Confidence 57999999999999999 779999999999999999988877 4567889999888887
No 12
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=99.96 E-value=5.4e-30 Score=223.48 Aligned_cols=131 Identities=23% Similarity=0.223 Sum_probs=121.4
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++. ++|++++++++..|++++++.++.++ |
T Consensus 327 ~s~pI~~~~~si~DgqIvLsr~La~~g~yPAIdvl~S~SR~~~~~~~-----~~~~~~a~~lr~~la~y~el~~~~~~-G 400 (507)
T 1fx0_A 327 VSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQI-----KAMKKVAGKLKLELAQFAELEAFAQF-A 400 (507)
T ss_dssp TTSHHHHHHHTTSSCBCCCCSSSSSSSCSSCCCTTTCCCTTGGGGSC-----HHHHHHHHHHHHHHHHHHHHTTTGGG-C
T ss_pred cccchHHHHHhhcCcEEEEehhHhhCCCCCccchhhhhccccccCCC-----HHHHHHHHHHHHHHHhhhHHHHHHHh-c
Confidence 58999999999999999999999999999999999999999999766 59999999999999999999999886 7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF 143 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~ 143 (154)
+++++++...+.++++| +.||+|+.++++++++++..+|.+ .++.++++|.+.|.+|
T Consensus 401 -~~l~~~~~~~l~~~~~i-~~fL~Q~~~~~~~~~e~~~~l~~~----~~g~l~~i~~~~i~~~ 457 (507)
T 1fx0_A 401 -SDLDKATQNQLARGQRL-RELLKQPQSAPLTVEEQVMTIYTG----TNGYLDSLELDQVRKY 457 (507)
T ss_dssp -SSCCHHHHHHHHHHHHH-HHHHCCCTTCCCCHHHHHHHHHHH----HTTSSSSSCHHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHH-HHHHCCCCCCCCCHHHHHHHHHHH----hhchhcCCCHHHHHHH
Confidence 67999999999999999 779999999999999999988876 4567889999888887
No 13
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=99.96 E-value=2.9e-30 Score=225.00 Aligned_cols=131 Identities=23% Similarity=0.259 Sum_probs=120.3
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++. ++|.+++++++..|+++++++++.++ |
T Consensus 326 ~s~pI~~~~~si~DgqI~Lsr~La~~g~~PAIdvl~S~SRv~~~~~~-----~~~~~~a~~lr~~la~y~el~~~~~~-G 399 (502)
T 2qe7_A 326 VSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVGISVSRVGGAAQI-----KAMKKVAGTLRLDLAQYRELQAFAQF-G 399 (502)
T ss_dssp CSSHHHHHHHTTSSEEEEECHHHHTTTCSSCBCTTTCEESSGGGGSC-----HHHHHHHHHHHHHHHHHHHGGGSTTC-C
T ss_pred cccchhHHHhhhcCcEEEEehhHhhCCCCceeCcccccccCCCccCC-----HHHHHHHHHHHHHHhhhHHHHHHHHh-c
Confidence 68999999999999999999999999999999999999999999766 59999999999999999999999776 7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF 143 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~ 143 (154)
+++++++...+.++++| +.||+|+.++++++++++..+|.+ .++.++++|.+.|.+|
T Consensus 400 -~~l~~~~~~~l~~~~~i-~~fL~Q~~~~~~~~~~~~~~l~~~----~~g~l~~i~~~~i~~~ 456 (502)
T 2qe7_A 400 -SDLDKATQAKLNRGERT-VEILKQDEHKPMPVEEQVISIYAV----TNGFMDDIPVEDVRRF 456 (502)
T ss_dssp -CCTTTTTTTTHHHHHHH-HHHHCCCTTCCCCHHHHHHHHHHH----HTTTTTSSCSTTHHHH
T ss_pred -cCCCHHHHHHHHHHHHH-HHHhCCCCCCCCCHHHHHHHHHHH----HhhhhcCCCHHHHHHH
Confidence 56888888899999999 779999999999999999988877 4567889998888887
No 14
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=99.96 E-value=1.8e-29 Score=219.92 Aligned_cols=131 Identities=21% Similarity=0.255 Sum_probs=118.7
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
++|||||++++|+||||||||+||++||||||||+.|+||+|+.++. ++|++++.+++..|+++++++++.++ |
T Consensus 337 ~s~pIp~~~~si~DGqIvLsr~La~~giyPAIdvl~SvSRv~~~~~~-----~~~~~va~~lr~~la~y~el~~~~~~-g 410 (513)
T 3oaa_A 337 VSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQT-----KIMKKLSGGIRTALAQYRELAAFSQF-A 410 (513)
T ss_dssp CSSHHHHHHHHHSSEEEEECHHHHTTSCCSCBCTTTCEESSGGGGSC-----HHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred ccCcchHhhhccCCeEEEEehhHHhCCCCCccCccccccccCccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHh-h
Confidence 68999999999999999999999999999999999999999998766 49999999999999999999999998 6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596 81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF 143 (154)
Q Consensus 81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~ 143 (154)
+++++++...+.++++| +.||+|+.++++++++++..++.+. ++.++.+|.+.+.+|
T Consensus 411 -~~ld~~~~~~l~~~~~i-~~fL~Q~~~~~~~~~e~~~~l~a~~----~g~ld~~~~~~~~~~ 467 (513)
T 3oaa_A 411 -SDLDDATRKQLDHGQKV-TELLKQKQYAPMSVAQQSLVLFAAE----RGYLADVELSKIGSF 467 (513)
T ss_dssp -CSCCHHHHHHHHHHHHH-HHHTCCCSSCCCCTTHHHHHHHHHH----SCTTTTTCCHHHHHH
T ss_pred -ccCCHHHHHHHHHHHHH-HHHhCCCCCCCCCHHHHHHHHHHHh----cCCCccCCHHHHHHH
Confidence 57999999999999999 8899999999999999998777664 456777777766665
No 15
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.86 E-value=3.4e-22 Score=167.32 Aligned_cols=118 Identities=17% Similarity=0.243 Sum_probs=102.3
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
+++||+|++..+.||+|+|++.+++.|+||||||+.|+||+++.+++ ++|.+++.+++..|++++++.++.++.|
T Consensus 228 l~~~i~d~v~~i~dG~Ivl~~~l~~~~~~Paid~~~S~sr~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 302 (347)
T 2obl_A 228 VNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVT-----SEHLRAAAECKKLIATYKNPELLIRIGE 302 (347)
T ss_dssp CCCHHHHHHHHHCSEEEEBCHHHHTTTCSSCBCGGGCEETTHHHHSC-----HHHHHHHHHHHHHHHHCCCTHHHHTTTC
T ss_pred CCChhhhheEEeeCcEEEEeCCHHHcCCCCCcCccccccccccccCC-----HHHHHHHHHHHHHHHccHHHHHHHHhcC
Confidence 46899999999999999999999999999999999999999999876 4999999888777777777777777655
Q ss_pred CCCCCHHH-HHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596 81 EEALTPDD-LLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL 124 (154)
Q Consensus 81 ~d~l~d~~-~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll 124 (154)
.+..+|++ ...+.+++.| ++||+|+.++++++++++..+|.++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~-~~fl~Q~~~~~~~~~~~~~~~~~~~ 346 (347)
T 2obl_A 303 YTMGQDPEADKAIKNRKLI-QNFIQQSTKDISSYEKTIESLFKVV 346 (347)
T ss_dssp CCCCSCHHHHHHHHTHHHH-HHHHCCCTTCCCCHHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 44555554 6778889998 8899999999999999999988874
No 16
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=99.79 E-value=2e-20 Score=159.46 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=71.1
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
|+|||+|++++|+||||||||+||++||||||||+.|.||+|+.++++ +|.+++.+++..|+.++++..+.++.|
T Consensus 331 ~~dpI~d~~~~i~dg~IvLsR~La~~giyPAIDvl~S~SR~~~~l~~~-----~h~~~a~~lr~~la~y~e~e~l~~ll~ 405 (427)
T 3l0o_A 331 MDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRREELLLDE-----ETLKKVWLLRRMLSAMTEEEGLTLILN 405 (427)
T ss_dssp HHHHHHHHTTTCCSEEEEBCHHHHTTTCSSCBCSTTCEETTGGGTSCH-----HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cCCcchHHhcccCCceEEEeHHHHhCCCCCccCccccccccccccCCH-----HHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999884 999999999999999999999988875
Q ss_pred C
Q psy5596 81 E 81 (154)
Q Consensus 81 ~ 81 (154)
.
T Consensus 406 ~ 406 (427)
T 3l0o_A 406 K 406 (427)
T ss_dssp H
T ss_pred H
Confidence 3
No 17
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.78 E-value=6e-20 Score=157.89 Aligned_cols=118 Identities=20% Similarity=0.241 Sum_probs=97.7
Q ss_pred CCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhcC
Q psy5596 2 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGE 81 (154)
Q Consensus 2 tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G~ 81 (154)
++|++|++..+.||+|++++.+++.++||||||+.|+||++..+++ ++|.+++++++..|++++++.++.++.|.
T Consensus 318 ~~~iad~v~~l~dG~Ivl~~~~~~~~~~Paidv~~s~sR~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 392 (438)
T 2dpy_A 318 QDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIT-----EQHYARVRLFKQLLSSFQRNRDLVSVGAY 392 (438)
T ss_dssp CCHHHHHHHHHSSEEEEECHHHHHTTCSSCEEEEEEEETTHHHHSC-----HHHHHHHHHHHHHHHHHHHGGGTSSSSCC
T ss_pred cchhhceEEEEeCcEEEEeCCHHHccCCCCcCCcccccccccccCC-----HHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Confidence 5789999999999999999999999999999999999999988766 59999998776666666666666555443
Q ss_pred CCCCHHH-HHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596 82 EALTPDD-LLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR 125 (154)
Q Consensus 82 d~l~d~~-~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~ 125 (154)
+..+|++ ...+.+++.| ++||+|+.++++++++++..++.+++
T Consensus 393 ~~~~d~~~~~~i~~~~~~-~~fl~Q~~~~~~~~~~~~~~~~~~~~ 436 (438)
T 2dpy_A 393 AKGSDPMLDKAITLWPQL-EAFLQQGIFERADWEDSLQALDLIFP 436 (438)
T ss_dssp CTTSCHHHHHHHTTHHHH-HHHHCCCTTCCCCHHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHHHHH-HHHcCCCCCCCCCHHHHHHHHHHHHh
Confidence 3344433 4567778888 88999999999999999999998864
No 18
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=99.78 E-value=2.9e-20 Score=158.44 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=72.8
Q ss_pred CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 80 (154)
Q Consensus 1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G 80 (154)
|+|||+|++++|+||||||||+||++||||||||+.|.||+|+.++++ +|.+++.+++..|+.+++++.+.++.|
T Consensus 330 ~~dpI~d~~~~i~dg~ivLsR~La~~giyPAIDvl~S~SR~~~~~~~~-----~~~~~a~~lr~~la~~~e~~~~~~ll~ 404 (422)
T 3ice_A 330 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQ-----EELQKMWILRKIIHPMGEIDAMEFLIN 404 (422)
T ss_dssp HHHHHHHHHHHHCSEEEEBCHHHHHTTCSSCBCTTTCEESSGGGSSCH-----HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccchHHHHhcccCCceEEEcHHHHhcCCCCccCccccccccchhhCCH-----HHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 468999999999999999999999999999999999999999998874 999999999999999999999999886
Q ss_pred CCC
Q psy5596 81 EEA 83 (154)
Q Consensus 81 ~d~ 83 (154)
.-.
T Consensus 405 ~~~ 407 (422)
T 3ice_A 405 KLA 407 (422)
T ss_dssp TTT
T ss_pred Hhh
Confidence 443
No 19
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=37.69 E-value=10 Score=30.89 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHccHhHHHHHhhh-cCCCCCHHHHHHHHHHHHH
Q psy5596 56 SDVSNQLYACYAIGKDVQAMKAVV-GEEALTPDDLLYLEFLTKF 98 (154)
Q Consensus 56 ~~~a~~~~~~y~~~~eL~~ig~~~-G~d~l~d~~~~~~~~~~~i 98 (154)
....+++++.|++.++++.+|.|. |.|+..+..+....+...+
T Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 324 (347)
T 2obl_A 281 AAECKKLIATYKNPELLIRIGEYTMGQDPEADKAIKNRKLIQNF 324 (347)
T ss_dssp HHHHHHHHHHCCCTHHHHTTTCCCCCSCHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHH
Confidence 344466677777777777777776 7776666655554444333
No 20
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=35.41 E-value=62 Score=23.87 Aligned_cols=37 Identities=5% Similarity=0.003 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhh
Q psy5596 89 LLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRI 126 (154)
Q Consensus 89 ~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~ 126 (154)
...+++-++| +..||++...++++.+-.+.+..++.+
T Consensus 11 ~~LL~KtRkI-N~lLq~~~~~~v~f~eia~vLs~vL~~ 47 (170)
T 2gx5_A 11 MALLQKTRII-NSMLQAAAGKPVNFKEMAETLRDVIDS 47 (170)
T ss_dssp HHHHHHHHHH-HHHHHSCCCSCCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHH-HHHHHhCCCCCCCHHHHHHHHHHHhCC
Confidence 4567788888 999999988999999888888888874
No 21
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=28.60 E-value=12 Score=31.56 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHccHhHHHHHhhh-cCCCCCHHHHHHHHHHHH
Q psy5596 56 SDVSNQLYACYAIGKDVQAMKAVV-GEEALTPDDLLYLEFLTK 97 (154)
Q Consensus 56 ~~~a~~~~~~y~~~~eL~~ig~~~-G~d~l~d~~~~~~~~~~~ 97 (154)
....+++++.|++.++++.+|.|. |.|+..|..+....+...
T Consensus 370 ~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~ 412 (438)
T 2dpy_A 370 VRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLWPQLEA 412 (438)
T ss_dssp HHHHHHHHHHHHHGGGTSSSSCCCTTSCHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHH
Confidence 444566677777777777777776 777666665544444333
No 22
>3f7c_A Protein of unknown function (DUF416); structural genomics, joint center for structural genomics, J protein structure initiative; HET: CIT; 2.00A {Marinobacter aquaeolei VT8}
Probab=27.33 E-value=9.3 Score=29.22 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=20.6
Q ss_pred CCCCCCCcCCCChhHHHHHhhcc
Q psy5596 26 RQIYPPINVLPSLSRLMKSAIGE 48 (154)
Q Consensus 26 ~g~yPAId~l~S~SR~~~~v~~~ 48 (154)
-|.|||+|.-..+|-++..+.++
T Consensus 89 yGvyPA~DAc~ALs~ll~~~~~~ 111 (200)
T 3f7c_A 89 YGVYPAFDFCQLLEQALLNRLNP 111 (200)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccchHHHHHHHHHHHHHHHHHcC
Confidence 38999999999999999987775
No 23
>2lkl_A Erythrocyte membrane protein 1 (pfemp1); helical protein, cell adhesion; NMR {Plasmodium falciparum}
Probab=20.07 E-value=1.3e+02 Score=19.30 Aligned_cols=44 Identities=5% Similarity=0.167 Sum_probs=34.3
Q ss_pred CCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhcCCCCCH
Q psy5596 34 VLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTP 86 (154)
Q Consensus 34 ~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G~d~l~d 86 (154)
+++|.|.+- ..+|..+-...++-|-+++.-..+..-...||...
T Consensus 2 ~~~~~~k~t---------d~ewn~lk~~fis~~lq~eq~~dVaK~t~~DPI~N 45 (81)
T 2lkl_A 2 PLGSMNKFT---------DDEWNQLKQDFISGILENEQKDLVAKLTNSDPIMN 45 (81)
T ss_dssp CCCSCCCCC---------HHHHHHHHHHHHHHHHHSTTHHHHHHHTSSCSSCT
T ss_pred CCccccccc---------ccHHHHHHHHHHHHHHhhcCccccCcCCCCchHHH
Confidence 577777643 34899999999999999998888888776666654
Done!