RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5596
(154 letters)
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 234 bits (599), Expect = 1e-76
Identities = 82/149 (55%), Positives = 107/149 (71%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
ITHPIPDL+GYITEGQI V R+LH + IYPPINVLPSLSRLM S IG TR+DH VS+
Sbjct: 319 ITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSD 378
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
Q+YA YA G+D++ + A+VG+EAL+ D +LEF FE FV QG ENRT+ ++L+IG
Sbjct: 379 QMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIG 438
Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDSR 149
WQ+L P+ L RI + +++P +
Sbjct: 439 WQILTHLPENQLGRIDNKYIQKYHPAHRK 467
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 219 bits (561), Expect = 4e-71
Identities = 76/144 (52%), Positives = 105/144 (72%), Gaps = 1/144 (0%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
THPIPDLTGYITEGQI + R+LH + IYPPI+ LPSLSRLM + +G+ TR+DH VS+
Sbjct: 321 RTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSD 380
Query: 61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
QLY+ YA G D++ + A++GE+ALT +D YL+F FE+ F++QG +NR++ ESL I
Sbjct: 381 QLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFFINQG-QQNRSIEESLQIA 439
Query: 121 WQLLRIFPKEMLKRIPASTLAEFY 144
W LL + P+ LKRI + ++Y
Sbjct: 440 WALLSMLPQGELKRISKDHIGKYY 463
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 55.8 bits (135), Expect = 4e-10
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 4 PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN--- 60
PI D I +G I + R+L YP I++ S+SR M + I E H
Sbjct: 320 PIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITE-----QHYARVRLFK 374
Query: 61 QLYACYAIGKDVQAMKA-VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDI 119
QL + + +D+ ++ A G + + + L F+ QG +E +SL
Sbjct: 375 QLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLWPQLE----AFLQQGIFERADWEDSLQ- 429
Query: 120 GWQLLRIFP 128
L IFP
Sbjct: 430 --ALDLIFP 436
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 52.3 bits (126), Expect = 6e-09
Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 4 PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN--- 60
PI D I +G I + R+L +P I++ S SR+M ++ +H +
Sbjct: 231 PIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMH-----NVVTSEHLRAAAECK 285
Query: 61 QLYACYAIGKDVQAMKA-VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDI 119
+L A Y + + + +G++ + + + +NF+ Q + + ++++
Sbjct: 286 KLIATYKNPELLIRIGEYTMGQDPEADKAIKNRKLI----QNFIQQSTKDISSYEKTIE- 340
Query: 120 GWQLLRIF 127
L ++
Sbjct: 341 --SLFKVV 346
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 47.8 bits (114), Expect = 3e-07
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIG--EDMTRKDHSDV 58
+ P+ T + + +D L R+ +P IN L S S + + + +
Sbjct: 399 FSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAM 458
Query: 59 SNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
++ A ++Q + +VG +AL + L ++++ Q
Sbjct: 459 RDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQ 505
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 47.4 bits (113), Expect = 4e-07
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMK--SAIGEDMTRKDHSDV 58
++ P+ T I +D L R+ +P IN S S + +D+ ++
Sbjct: 391 MSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPEL 450
Query: 59 SNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
+ + +Q + +VG +AL + L +E ++F+ Q
Sbjct: 451 RDAISELLQREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQ 497
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-06
Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 38/155 (24%)
Query: 4 PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRL-----MKSAIGEDMTRKDHSDV 58
P YI DR ++ Q++ NV SRL ++ A+ E + +V
Sbjct: 105 PSMMTRMYIE----QRDRLYNDNQVFAKYNV----SRLQPYLKLRQALLEL---RPAKNV 153
Query: 59 SNQLYACYAIGKDVQAMKAV-----------------VGEEALTPDDLL--YLEFLTKFE 99
+ GK A+ + +P+ +L + L + +
Sbjct: 154 L--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQID 210
Query: 100 KNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKR 134
N+ S+ ++ + I +L R+ + +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Score = 37.1 bits (85), Expect = 0.001
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 39/111 (35%)
Query: 35 LP----SLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLL 90
LP + + S I E + +D + + K +++ + L P +
Sbjct: 318 LPREVLTTNPRRLSIIAESI--RDGLATWDN-WKHVNCDKLTTIIESSL--NVLEPAEY- 371
Query: 91 YLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLA 141
R +++ L +FP IP L+
Sbjct: 372 --------------------RKMFDRLS-------VFPPSA--HIPTILLS 393
Score = 27.9 bits (61), Expect = 1.9
Identities = 25/159 (15%), Positives = 54/159 (33%), Gaps = 47/159 (29%)
Query: 2 THPIPDLTGYI-TEGQIYVDRQLHNRQI--------YPPIN-VLPSLSRLMKSAIGEDMT 51
T IP + Y+ + ++ + LH + + + + P L + S IG +
Sbjct: 425 TISIPSI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 52 RKDHSDVSN---QLY---------------ACYAIG------KDVQAMKAVVGEEALTPD 87
+H + ++ A A G + ++ K + + +
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 88 DLL--YLEFLTKFEKNFVSQG---------NYENRTVYE 115
L+ L+FL K E+N + E+ ++E
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 35.0 bits (81), Expect = 0.005
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 12 ITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 345 ITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 378
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 35.0 bits (81), Expect = 0.006
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 12 ITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IT+GQIY++ L P INV S+SR+ SA
Sbjct: 350 ITDGQIYLEPGLFYAGQRPAINVGLSVSRVGGSA 383
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 35.0 bits (81), Expect = 0.006
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 12 ITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IT+GQI++ L N I P INV S+SR+ +A
Sbjct: 338 ITDGQIFLSADLFNAGIRPAINVGISVSRVGSAA 371
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 34.9 bits (81), Expect = 0.007
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 12 ITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IT+GQI+++ L N I P +N S+SR+ +A
Sbjct: 348 ITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAA 381
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 35.0 bits (81), Expect = 0.007
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 12 ITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
IT+GQI+++ L + P +NV S+SR+ +A
Sbjct: 337 ITDGQIFLESDLFYSGVRPAVNVGISVSRVGGAA 370
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC
F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1
b.49.1.1 c.37.1.11
Length = 473
Score = 34.6 bits (80), Expect = 0.009
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAI-GEDMTRKDHSDVS 59
T P P T + ++R+L IYP ++ L S SR + I GE +H V+
Sbjct: 313 YTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEIVGE-----EHYQVA 367
Query: 60 NQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
++ K++Q + A++G + L+ +D L + + + F+SQ
Sbjct: 368 RKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQF-FLSQ 412
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 31.5 bits (72), Expect = 0.082
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 20 DRQLHNRQIYPPINVLPSLSRLMKSAI-GEDMTRKDHSDVSNQLYACYAIGKDVQAMKAV 78
R L + IYP ++ L S S +++ I GE +H +++ ++ K++Q + A+
Sbjct: 353 SRGLAAKGIYPAVDPLDSTSTMLQPRIVGE-----EHYEIAQRVKETLQRYKELQDIIAI 407
Query: 79 VGEEALTPDDLLYLEFLTKFEKNFVSQ 105
+G + L+ +D L + K E+ F+SQ
Sbjct: 408 LGLDELSEEDRLTVARARKIER-FLSQ 433
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 30.0 bits (68), Expect = 0.33
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 20/81 (24%)
Query: 38 LSRLMKSAIGEDMTRKD------------HSDVSNQL-YACYAIGK--DVQA-----MKA 77
+ L+ + D+TR++ +S L + + I K +V+ ++
Sbjct: 279 ATELILAEKRGDLTRENVNQCILEMLIAAPDTMSVSLFFMLFLIAKHPNVEEAIIKEIQT 338
Query: 78 VVGEEALTPDDLLYLEFLTKF 98
V+GE + DD+ L+ + F
Sbjct: 339 VIGERDIKIDDIQKLKVMENF 359
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 29.1 bits (66), Expect = 0.50
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 19/93 (20%)
Query: 20 DRQLHNRQIYPPINVLPSLSRLMKSAI-GEDMTRKDHSDVSN------QLYACYAIGKDV 72
R + IYP ++ L S SR+M I G +H DV+ Q Y K +
Sbjct: 340 SRAIAELGIYPAVDPLDSTSRIMDPNIVGS-----EHYDVARGVQKILQDY------KSL 388
Query: 73 QAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
Q + A++G + L+ +D L + K ++ F+SQ
Sbjct: 389 QDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ 420
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold ATP-binding,
hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli
k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Length = 422
Score = 29.1 bits (66), Expect = 0.57
Identities = 5/24 (20%), Positives = 16/24 (66%)
Query: 17 IYVDRQLHNRQIYPPINVLPSLSR 40
+++ R++ ++++P I+ S +R
Sbjct: 346 LHLSRKIAEKRVFPAIDYNRSGTR 369
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA
capture mechanism, ATP-binding, hydrolase,
nucleotide-binding, RN binding; 2.35A {Thermotoga
maritima}
Length = 427
Score = 29.1 bits (66), Expect = 0.58
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 17 IYVDRQLHNRQIYPPINVLPSLSR 40
+ + RQL N++I+P IN+L S +R
Sbjct: 347 LVLSRQLANKRIFPAINLLLSGTR 370
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.3
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 129 KEMLKRIPASTLAEFYPRDS 148
K+ LK++ AS L + Y DS
Sbjct: 19 KQALKKLQAS-L-KLYADDS 36
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA
polymer binding protein, RNA binding protein; 2.10A
{Saccharomyces cerevisiae}
Length = 157
Score = 27.1 bits (59), Expect = 2.2
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 62 LYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF-------VSQGNYENRT-V 113
LY +IG+ + + + + + +++ N +++ +
Sbjct: 62 LYIIDSIGRAYLD-ETRSNSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKI 120
Query: 114 YESLDIGWQLLRIFPKEMLKRI 135
LDI W +F K L I
Sbjct: 121 RMLLDI-WDRSGLFQKSYLNAI 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 2.8
Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 54/140 (38%)
Query: 55 HS-DVSNQLYACYAIGKD------VQAMKAVVG-EEALTPDDLL--YLEF---------- 94
H V + + ++ + + +E TP +L+ +L +
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV 77
Query: 95 ----------LTKFEKNFVSQGNYENRTVYESLDI---GWQLLRIFPKEMLKRIPASTLA 141
LT+FE ++ +GN DI +LL+ ++K +
Sbjct: 78 GQFDQVLNLCLTEFENCYL-EGN----------DIHALAAKLLQENDTTLVKT--KELIK 124
Query: 142 EFY--------PRDSRHTGA 153
+ P D + A
Sbjct: 125 NYITARIMAKRPFDKKSNSA 144
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 2.9
Identities = 7/49 (14%), Positives = 14/49 (28%)
Query: 44 SAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYL 92
I + + + Y + ++ + LT DDL
Sbjct: 1292 REIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVA 1340
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli}
Length = 387
Score = 26.3 bits (59), Expect = 4.8
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 67 AIGKDVQAMKAVVGEEALTPDDLLYLE---FLTKFEKN 101
+ V+ +K + + +L+ LE F +K+
Sbjct: 84 KLSNPVRLVKDYLDGVDVAEGELVVLENVRFNKGEKKD 121
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: ADP;
2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Length = 395
Score = 26.3 bits (59), Expect = 4.8
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 67 AIGKDVQAMKAVVGEEALTPDDLLYLE---FLTKFEKN 101
I K V+ K + + +++ E F + +K+
Sbjct: 87 IINKPVKFAKDWLDGVDVKAGEIVMCENVRFNSGEKKS 124
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 26.0 bits (58), Expect = 5.4
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 13 TEGQIYVDRQLHNRQIYPPINVLPS 37
+G + + + + IY + + P
Sbjct: 260 DDGSVVLASKDYRLYIYRYVQLAPV 284
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 26.0 bits (57), Expect = 5.9
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 35 LPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIG 69
L +++ L++ DH ++ + YA A+
Sbjct: 75 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 109
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 25.7 bits (56), Expect = 9.2
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 34 VLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIG 69
L +++ L++ DH ++ + YA A+
Sbjct: 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.401
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,365,657
Number of extensions: 128898
Number of successful extensions: 304
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 34
Length of query: 154
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,328,508
Effective search space: 298667052
Effective search space used: 298667052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)