RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5596
         (154 letters)



>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
           ATP synthase {Spinach (Spinacia oleracea), chloroplast
           [TaxId: 3562]}
          Length = 276

 Score = 75.7 bits (186), Expect = 6e-18
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
           ++  IP     IT+GQI++   L N  I P INV  S+SR+  +A
Sbjct: 231 VSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAA 275


>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
           ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
          Length = 285

 Score = 75.2 bits (185), Expect = 1e-17
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
           ++  IP     IT+GQI+++ +L  + I P INV  S+SR+  +A
Sbjct: 240 VSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 284


>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
           ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 276

 Score = 67.8 bits (166), Expect = 4e-15
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRL 41
           +T P P  T    +    + R +    IYP ++ L S SR+
Sbjct: 236 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 276


>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
           ATPase domain {Escherichia coli [TaxId: 562]}
          Length = 289

 Score = 55.0 bits (132), Expect = 2e-10
 Identities = 11/79 (13%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           +   I +        ++++ R++  ++++P I+   S +R       E +T ++      
Sbjct: 199 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKE-----ELLTTQEELQKMW 253

Query: 61  QLYACYAIGKDVQAMKAVV 79
            L        ++ AM+ ++
Sbjct: 254 ILRKIIHPMGEIDAMEFLI 272


>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase
           (transcarboxylase 12S) {Propionibacterium freudenreichii
           [TaxId: 1744]}
          Length = 253

 Score = 25.6 bits (55), Expect = 2.4
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 3   HPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKD 54
             I  + G    G  Y         +    ++  +  +++KS  GED+T  +
Sbjct: 163 PQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVTADE 214


>d1ooha_ a.39.2.1 (A:) Odorant binding protein LUSH {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 126

 Score = 23.9 bits (51), Expect = 6.4
 Identities = 6/53 (11%), Positives = 18/53 (33%)

Query: 14  EGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACY 66
           +G+    + L       P  ++    + +++        K+  +   Q   C+
Sbjct: 63  KGEFNAPKALAQLPHLVPPEMMEMSRKSVEACRDTHKQFKESCERVYQTAKCF 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 568,336
Number of extensions: 24118
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 9
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)