BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5597
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 61/105 (58%), Gaps = 8/105 (7%)
Query: 73 GNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSR 132
G N + F G L+ VSEDM+GRVF+G G+P D GP IL E YLDI G+ INP +R
Sbjct: 69 GINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIAR 128
Query: 133 TYPQEMIQTGISAIDKI-------LLQVFEGTSGIDAKNTVCEFT 170
YP E IQTGISAID + L VF G SG+ K +
Sbjct: 129 DYPDEFIQTGISAIDHLNTLVRGQKLPVFSG-SGLPHKELAAQIA 172
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 43/58 (74%)
Query: 4 KSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIIT 61
++ + DS D+FA+VFAA+G+ E A FF +DF + G+++ +F+NLANDP IERI T
Sbjct: 174 QATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLL 201
DK ++Q+FEGTSGI+ KN+ F G L+ VSEDM+GRVF+G G+P D +L
Sbjct: 57 DKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEIL 111
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Query: 73 GNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSR 132
G N + F G L+ VSED +GRVF+G G+P D GP IL E YLDI G+ INP +R
Sbjct: 69 GINLKNSSVRFLGHPLQLGVSEDXIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIAR 128
Query: 133 TYPQEMIQTGISAIDKI-------LLQVFEGTSGIDAKNTVCEFT 170
YP E IQTGISAID + L VF G SG+ K +
Sbjct: 129 DYPDEFIQTGISAIDHLNTLVRGQKLPVFSG-SGLPHKELAAQIA 172
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLL 201
DK +Q+FEGTSGI+ KN+ F G L+ VSED +GRVF+G G+P D +L
Sbjct: 57 DKAXVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDXIGRVFDGLGRPKDNGPEIL 111
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 4 KSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIIT-- 61
++ + DS D+FA+VFAA+G+ E A FF +DF + G+++ F NLANDP IERI T
Sbjct: 174 QATVLDSSDDFAVVFAAIGITFEEAEFFXEDFRQTGAIDRSVXFXNLANDPAIERIATPR 233
Query: 62 --FQAKYFSIYNDGNN 75
A + Y G +
Sbjct: 234 XALTAAEYLAYEKGXH 249
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 83 FTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTG 142
FTG+ L+ P S D+LGR+ +GSG+P D GP I+ + LDI G +NPY+R P++ IQTG
Sbjct: 71 FTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTG 130
Query: 143 ISAID 147
IS ID
Sbjct: 131 ISTID 135
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 10 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIIT----FQAK 65
SE FA+VFAAMG+ E A++F DFE+ G++E +FLNLA+DP +ERI+T A
Sbjct: 172 SESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAA 231
Query: 66 YFSIYNDGNNRGSFICEFT 84
+ Y G + + + T
Sbjct: 232 EYLAYEHGMHVLVILTDIT 250
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 144 SAIDKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLL 201
S+ D +++QVFEGT G+D K+ FTG+ L+ P S D+LGR+ +GSG+P D R++
Sbjct: 47 SSADIVVVQVFEGTGGLD-KDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIV 103
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 83 FTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTG 142
FTG+ L+ P S D+LGR+ +GSG+P D GP I+ + LDI G +NPY+R P++ IQTG
Sbjct: 71 FTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTG 130
Query: 143 ISAID 147
IS ID
Sbjct: 131 ISTID 135
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 10 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIIT----FQAK 65
SE FA+VFAAMG+ E A++F DFE+ G++E +FLNLA+DP +ERI+T A
Sbjct: 172 SESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAA 231
Query: 66 YFSIYNDGNNRGSFICEFT 84
+ Y G + + + T
Sbjct: 232 EYLAYEHGMHVLVILTDIT 250
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 144 SAIDKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLL 201
S+ D +++QVFEGT G+D K+ FTG+ L+ P S D+LGR+ +GSG+P D R++
Sbjct: 47 SSADIVVVQVFEGTGGLD-KDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIV 103
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 83 FTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTG 142
FTG+ L+ P S D+LGR+ +GSG+P D GP I+ + LDI G +NPY+R P++ IQTG
Sbjct: 71 FTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTG 130
Query: 143 ISAID 147
IS ID
Sbjct: 131 ISTID 135
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 10 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIIT 61
SE FA+VFAAMG+ E A++F DFE+ G++E +FLNLA+DP +ERI+T
Sbjct: 172 SESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 223
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 144 SAIDKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLL 201
S+ D +++QVFEGT G+D K+ FTG+ L+ P S D+LGR+ +GSG+P D R++
Sbjct: 47 SSADIVVVQVFEGTGGLD-KDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIV 103
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 83 FTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTG 142
FTG+ L+ P S D+LGR+ +GSG+P D GP I+ + LDI G +NPY+R P++ IQTG
Sbjct: 80 FTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTG 139
Query: 143 ISAID 147
IS ID
Sbjct: 140 ISTID 144
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 10 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIIT----FQAK 65
SE FA+VFAAMG+ E A++F DFE+ G++E +FLNLA+DP +ERI+T A
Sbjct: 181 SESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAA 240
Query: 66 YFSIYNDGNNRGSFICEFT 84
+ Y G + + + T
Sbjct: 241 EYLAYEHGMHVLVILTDIT 259
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 144 SAIDKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLL 201
S+ D +++QVFEGT G+D K+ FTG+ L+ P S D+LGR+ +GSG+P D R++
Sbjct: 56 SSADIVVVQVFEGTGGLD-KDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIV 112
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 83 FTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTG 142
FTG+ L+ P S D+LGR+ +GSG+P D GP I+ + LDI G +NPY+R P++ IQTG
Sbjct: 80 FTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTG 139
Query: 143 ISAID 147
IS ID
Sbjct: 140 ISTID 144
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 10 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIIT----FQAK 65
SE FA+VFAAMG+ E A++F DFE+ G++E +FLNLA+DP +ERI+T A
Sbjct: 181 SESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAA 240
Query: 66 YFSIYNDGNNRGSFICEFT 84
+ Y G + + + T
Sbjct: 241 EYLAYEHGMHVLVILTDIT 259
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 144 SAIDKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLL 201
S+ D +++QVFEGT G+D K+ FTG+ L+ P S D+LGR+ +GSG+P D R++
Sbjct: 56 SSADIVVVQVFEGTGGLD-KDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIV 112
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 43/62 (69%)
Query: 86 DILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISA 145
D+ R VS++MLGR FNG GKPID PPI E L I G P+NP +R P++ IQTGIS
Sbjct: 78 DVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGIST 137
Query: 146 ID 147
ID
Sbjct: 138 ID 139
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 9 DSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ----- 63
+ E+ FA+VFAAMG+ +F Q+FE G++ LFLN A+DPTIERI+T +
Sbjct: 182 EKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTV 241
Query: 64 AKYFSIYND 72
A+Y + +D
Sbjct: 242 AEYLAFEHD 250
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 150 LLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
++QVFE T+G+D T D+ R VS++MLGR FNG GKPID
Sbjct: 56 VIQVFEETTGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPID 101
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 43/62 (69%)
Query: 86 DILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISA 145
D+ R VS++MLGR FNG GKPID PPI E L I G P+NP +R P++ IQTGIS
Sbjct: 78 DVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGIST 137
Query: 146 ID 147
ID
Sbjct: 138 ID 139
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 9 DSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ----- 63
+ E+ FA+VFAAMG+ +F Q+FE G++ LFLN A+DPTIERI+T +
Sbjct: 182 EKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTV 241
Query: 64 AKYFSIYND 72
A+Y + +D
Sbjct: 242 AEYLAFEHD 250
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 150 LLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
++QVFE T+G+D T D+ R VS++MLGR FNG GKPID
Sbjct: 56 VIQVFEETTGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPID 101
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%)
Query: 84 TGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGI 143
TG I+ PV E +LGRV N G+P+D PI +Y IE R E +QTGI
Sbjct: 91 TGRIMEVPVGEALLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGI 150
Query: 144 SAIDKIL 150
AID ++
Sbjct: 151 KAIDSMI 157
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 163 KNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
+ T + TG I+ PV E +LGRV N G+P+D
Sbjct: 84 EGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLD 116
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 84 TGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGI 143
TG I+ PV E ++GRV N G+P+D P+ + IE + R E +QTGI
Sbjct: 91 TGRIMEVPVGETLIGRVVNPLGQPVDGLGPVETTETRPIESRAPGVMDRRSVHEPLQTGI 150
Query: 144 SAIDKIL 150
AID ++
Sbjct: 151 KAIDALV 157
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 170 TGDILRTPVSEDMLGRVFNGSGKPID 195
TG I+ PV E ++GRV N G+P+D
Sbjct: 91 TGRIMEVPVGETLIGRVVNPLGQPVD 116
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 36/70 (51%)
Query: 81 CEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQ 140
+ TG I + PVSE LGRV N KPID I A + IE SR E +Q
Sbjct: 89 VKATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQ 148
Query: 141 TGISAIDKIL 150
TG+ AID ++
Sbjct: 149 TGLIAIDAMI 158
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 151 LQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
L + EG+S + TG I + PVSE LGRV N KPID
Sbjct: 81 LMIQEGSS--------VKATGRIAQIPVSEAYLGRVINALAKPID 117
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 5 SVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDP-TIERIITFQ 63
++L+ N V+ A+G + +F+E G+ME + A+ P T++ + +
Sbjct: 183 TILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYT 242
Query: 64 ----AKYFS--------IYNDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKG 111
A+YF IY+D + + + + + R P E G VF + +++
Sbjct: 243 GAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERA 302
Query: 112 PPI 114
+
Sbjct: 303 AKL 305
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 87 ILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAI 146
I+ PV E++LGRV N G+P+D PI A+++ IE + R +QTGI AI
Sbjct: 107 IIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAI 166
Query: 147 D 147
D
Sbjct: 167 D 167
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 137 EMIQTGISAI------DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGS 190
E ++TG+ + D + + + I +TV I+ PV E++LGRV N
Sbjct: 66 EFVETGVKGVAFNLEEDNVGIIILGEYKDIKEGHTVRRLK-RIIEVPVGEELLGRVVNPL 124
Query: 191 GKPID 195
G+P+D
Sbjct: 125 GEPLD 129
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 84 TGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGI 143
TG IL PV +LGRV N G PID P+ + + +E R + +QTG
Sbjct: 91 TGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGY 150
Query: 144 SAIDKIL 150
A+D ++
Sbjct: 151 KAVDSMI 157
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 162 AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
A+ + TG IL PV +LGRV N G PID
Sbjct: 83 AEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPID 116
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
+G RG + + +G +R PV + LGR+ N G+PID+ PI + + I +
Sbjct: 58 TEGLVRGQKVLD-SGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFV 116
Query: 131 SRTYPQEMIQTGISAID 147
+ QE++ TGI +D
Sbjct: 117 EMSVEQEILVTGIKVVD 133
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 109 DKG-PPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGIDAKNTVC 167
D+G PPIL + L+++G+ +R + G S + I + +GT G+ V
Sbjct: 18 DEGLPPIL--NALEVQGRE----TRLVLEVAQHLGESTVRTIAM---DGTEGLVRGQKVL 68
Query: 168 EFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
+ +G +R PV + LGR+ N G+PID+
Sbjct: 69 D-SGAPIRIPVGPETLGRIMNVIGEPIDE 96
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
+G RG + + +G +R PV + LGR+ N G+PID+ PI + + I +
Sbjct: 70 TEGLVRGQKVLD-SGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFV 128
Query: 131 SRTYPQEMIQTGISAID 147
+ QE++ TGI +D
Sbjct: 129 EMSVEQEILVTGIKVVD 145
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 109 DKG-PPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGIDAKNTVC 167
D+G PPIL + L+++G+ +R + G S + I + +GT G+ V
Sbjct: 30 DEGLPPIL--NALEVQGRE----TRLVLEVAQHLGESTVRTIAM---DGTEGLVRGQKVL 80
Query: 168 EFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
+ +G +R PV + LGR+ N G+PID+
Sbjct: 81 D-SGAPIRIPVGPETLGRIMNVIGEPIDE 108
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
+G RG + + +G +R PV + LGR+ N G+PID+ PI + + I +
Sbjct: 70 TEGLVRGQKVLD-SGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFV 128
Query: 131 SRTYPQEMIQTGISAID 147
+ QE++ TGI +D
Sbjct: 129 EMSVEQEILVTGIKVVD 145
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 109 DKG-PPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGIDAKNTVC 167
D+G PPIL + L+++G+ +R + G S + I + +GT G+ V
Sbjct: 30 DEGLPPIL--NALEVQGRE----TRLVLEVAQHLGESTVRTIAM---DGTEGLVRGQKVL 80
Query: 168 EFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
+ +G +R PV + LGR+ N G+PID+
Sbjct: 81 D-SGAPIRIPVGPETLGRIMNVIGEPIDE 108
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
+G RG + + +G +R PV + LGR+ N G+PID+ PI + + I +
Sbjct: 70 TEGLVRGQKVLD-SGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFV 128
Query: 131 SRTYPQEMIQTGISAID 147
+ QE++ TGI +D
Sbjct: 129 EMSVEQEILVTGIKVVD 145
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 109 DKG-PPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGIDAKNTVC 167
D+G PPIL + L+++G+ +R + G S + I + +GT G+ V
Sbjct: 30 DEGLPPIL--NALEVQGRE----TRLVLEVAQHLGESTVRTIAM---DGTEGLVRGQKVL 80
Query: 168 EFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
+ +G +R PV + LGR+ N G+PID+
Sbjct: 81 D-SGAPIRIPVGPETLGRIMNVIGEPIDE 108
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
+G RG + + +G +R PV + LGR+ N G+PID+ PI + + I +
Sbjct: 68 TEGLVRGQKVLD-SGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFV 126
Query: 131 SRTYPQEMIQTGISAID 147
+ QE++ TGI +D
Sbjct: 127 EMSVEQEILVTGIKVVD 143
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 109 DKG-PPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGIDAKNTVC 167
D+G PPIL + L+++G+ +R + G S + I + +GT G+ V
Sbjct: 28 DEGLPPIL--NALEVQGRE----TRLVLEVAQHLGESTVRTIAM---DGTEGLVRGQKVL 78
Query: 168 EFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
+ +G +R PV + LGR+ N G+PID+
Sbjct: 79 D-SGAPIRIPVGPETLGRIMNVIGEPIDE 106
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 91 PVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEG---QPINPYSRTYPQEMIQTGISAID 147
P+ +LGRV +G GKP+D P A D L+ P NP RT + ++ TG+ AI+
Sbjct: 93 PLGPALLGRVLDGGGKPLDGLP---APDTLETGALITPPFNPLQRTPIEHVLDTGVRAIN 149
Query: 148 KIL 150
+L
Sbjct: 150 ALL 152
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 177 PVSEDMLGRVFNGSGKPID 195
P+ +LGRV +G GKP+D
Sbjct: 93 PLGPALLGRVLDGGGKPLD 111
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
+G RG + + +G +R PV + LGR+ N G+PID+ PI + + I +
Sbjct: 116 TEGLVRGQKVLD-SGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFV 174
Query: 131 SRTYPQEMIQTGISAID 147
+ QE++ TGI +D
Sbjct: 175 EMSVEQEILVTGIKVVD 191
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 109 DKG-PPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGIDAKNTVC 167
D+G PPIL + L+++G+ +R + G S + I + +GT G+ V
Sbjct: 76 DEGLPPIL--NALEVQGR----ETRLVLEVAQHLGESTVRTIAM---DGTEGLVRGQKVL 126
Query: 168 EFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
+ +G +R PV + LGR+ N G+PID+
Sbjct: 127 D-SGAPIRIPVGPETLGRIMNVIGEPIDE 154
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 80 ICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI--LAEDYLDIEGQPINPYSRTYPQE 137
I + TG I+ PV E++LGRV + G ID PI A + ++ I P R +E
Sbjct: 130 IVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIP--RISVRE 187
Query: 138 MIQTGISAIDKIL 150
+QTGI A+D ++
Sbjct: 188 PMQTGIKAVDSLV 200
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 166 VCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
+ + TG I+ PV E++LGRV + G ID
Sbjct: 130 IVKRTGAIVDVPVGEELLGRVVDALGNAID 159
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
+G RG + + TG + PV + LGR+ N G+PID+ PI ++ I P +
Sbjct: 100 TEGLVRGEKVLD-TGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFA 158
Query: 131 SRTYPQEMIQTGISAID 147
++ E+++TGI +D
Sbjct: 159 EQSTSAEILETGIKVVD 175
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 154 FEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
+GT G+ V + TG + PV + LGR+ N G+PID+
Sbjct: 97 MDGTEGLVRGEKVLD-TGGPISVPVGRETLGRIINVIGEPIDE 138
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 80 ICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI--LAEDYLDIEGQPINPYSRTYPQE 137
I + TG I+ PV E++LGRV + G ID PI A + ++ I P R +E
Sbjct: 87 IVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIP--RISVRE 144
Query: 138 MIQTGISAIDKIL 150
+QTGI A+D ++
Sbjct: 145 PMQTGIKAVDSLV 157
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 166 VCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
+ + TG I+ PV E++LGRV + G ID
Sbjct: 87 IVKRTGAIVDVPVGEELLGRVVDALGNAID 116
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 80 ICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI--LAEDYLDIEGQPINPYSRTYPQE 137
I + TG I+ PV E++LGRV + G ID PI A + ++ I P R +E
Sbjct: 87 IVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIP--RISVRE 144
Query: 138 MIQTGISAIDKIL 150
+QTGI A+D ++
Sbjct: 145 PMQTGIKAVDSLV 157
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 166 VCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
+ + TG I+ PV E++LGRV + G ID
Sbjct: 87 IVKRTGAIVDVPVGEELLGRVVDALGNAID 116
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 80 ICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI--LAEDYLDIEGQPINPYSRTYPQE 137
I + TG I+ PV E++LGRV + G ID PI A + ++ I P R +E
Sbjct: 69 IVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIP--RISVRE 126
Query: 138 MIQTGISAIDKIL 150
+QTGI A+D ++
Sbjct: 127 PMQTGIKAVDSLV 139
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 166 VCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
+ + TG I+ PV E++LGRV + G ID
Sbjct: 69 IVKRTGAIVDVPVGEELLGRVVDALGNAID 98
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 80 ICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI--LAEDYLDIEGQPINPYSRTYPQE 137
I + TG I+ PV E++LGRV + G ID PI A + ++ I P R +E
Sbjct: 87 IVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIP--RISVRE 144
Query: 138 MIQTGISAIDKIL 150
+QTGI A+D ++
Sbjct: 145 PMQTGIKAVDSLV 157
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 166 VCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
+ + TG I+ PV E++LGRV + G ID
Sbjct: 87 IVKRTGAIVDVPVGEELLGRVVDALGNAID 116
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 80 ICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI--LAEDYLDIEGQPINPYSRTYPQE 137
I + TG I+ PV E++LGRV + G ID PI A + ++ I P R +E
Sbjct: 64 IVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIP--RISVRE 121
Query: 138 MIQTGISAIDKIL 150
+QTGI A+D ++
Sbjct: 122 PMQTGIKAVDSLV 134
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 166 VCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
+ + TG I+ PV E++LGRV + G ID
Sbjct: 64 IVKRTGAIVDVPVGEELLGRVVDALGNAID 93
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
+G RG + + TG + PV + LGR+ N G+PID+ PI ++ I P +
Sbjct: 73 TEGLVRGEKVLD-TGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFA 131
Query: 131 SRTYPQEMIQTGISAID 147
++ E+++TGI +D
Sbjct: 132 EQSTSAEILETGIKVVD 148
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 154 FEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
+GT G+ V + TG + PV + LGR+ N G+PID+
Sbjct: 70 MDGTEGLVRGEKVLD-TGGPISVPVGRETLGRIINVIGEPIDE 111
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
+G RG + + TG + PV + LGR+ N G+PID+ PI ++ I P +
Sbjct: 73 TEGLVRGEKVLD-TGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFA 131
Query: 131 SRTYPQEMIQTGISAID 147
++ E+++TGI +D
Sbjct: 132 EQSTSAEILETGIKVVD 148
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 154 FEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
+GT G+ V + TG + PV + LGR+ N G+PID+
Sbjct: 70 MDGTEGLVRGEKVLD-TGGPISVPVGRETLGRIINVIGEPIDE 111
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
+G RG + + TG + PV + LGR+ N G+PID+ PI ++ I P +
Sbjct: 67 TEGLVRGEKVLD-TGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFA 125
Query: 131 SRTYPQEMIQTGISAID 147
++ E+++TGI +D
Sbjct: 126 EQSTSAEILETGIKVVD 142
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 154 FEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
+GT G+ V + TG + PV + LGR+ N G+PID+
Sbjct: 64 MDGTEGLVRGEKVLD-TGGPISVPVGRETLGRIINVIGEPIDE 105
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
+G RG + + TG + PV + LGR+ N G+PID+ PI ++ I P +
Sbjct: 62 TEGLVRGEKVLD-TGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFA 120
Query: 131 SRTYPQEMIQTGISAID 147
++ E+++TGI +D
Sbjct: 121 EQSTSAEILETGIKVVD 137
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 154 FEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
+GT G+ V + TG + PV + LGR+ N G+PID+
Sbjct: 59 MDGTEGLVRGEKVLD-TGGPISVPVGRETLGRIINVIGEPIDE 100
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
+G RG + + TG + PV + LGR+ N G+PID+ PI ++ I P +
Sbjct: 62 TEGLVRGEKVLD-TGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFA 120
Query: 131 SRTYPQEMIQTGISAID 147
++ E+++TGI +D
Sbjct: 121 EQSTSAEILETGIKVVD 137
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 154 FEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
+GT G+ V + TG + PV + LGR+ N G+PID+
Sbjct: 59 MDGTEGLVRGEKVLD-TGGPISVPVGRETLGRIINVIGEPIDE 100
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 80 ICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMI 139
+ + TG+I+ PV +LGRV + G PID PI A + + R E +
Sbjct: 64 LVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPV 123
Query: 140 QTGISAIDKIL 150
QTG+ A+D ++
Sbjct: 124 QTGLKAVDALV 134
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 153 VFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
V G+ + + + + TG+I+ PV +LGRV + G PID
Sbjct: 51 VLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPID 93
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 80 ICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMI 139
+ + TG+I+ PV +LGRV + G PID PI A + + R E +
Sbjct: 65 LVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPV 124
Query: 140 QTGISAIDKIL 150
QTG+ A+D ++
Sbjct: 125 QTGLKAVDALV 135
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 153 VFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
V G+ + + + + TG+I+ PV +LGRV + G PID
Sbjct: 52 VLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPID 94
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 80 ICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMI 139
+ + TG+I+ PV +LGRV + G PID PI A + + R E +
Sbjct: 89 LVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPV 148
Query: 140 QTGISAIDKIL 150
QTG+ A+D ++
Sbjct: 149 QTGLKAVDALV 159
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 153 VFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
V G+ + + + + TG+I+ PV +LGRV + G PID
Sbjct: 76 VLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPID 118
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 80 ICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMI 139
+ + TG+I+ PV +LGRV + G PID PI A + + R E +
Sbjct: 124 LVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPV 183
Query: 140 QTGISAIDKIL 150
QTG+ A+D ++
Sbjct: 184 QTGLKAVDALV 194
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 153 VFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
V G+ + + + + TG+I+ PV +LGRV + G PID
Sbjct: 111 VLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPID 153
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 80 ICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMI 139
+ + TG+I+ PV +LGRV + G PID PI A + + R E +
Sbjct: 89 LVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPV 148
Query: 140 QTGISAIDKIL 150
QTG+ A+D ++
Sbjct: 149 QTGLKAVDALV 159
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 153 VFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
V G+ + + + + TG+I+ PV +LGRV + G PID
Sbjct: 76 VLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPID 118
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 80 ICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMI 139
+ + TG+I+ PV +LGRV + G PID PI A + + R E +
Sbjct: 89 LVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPV 148
Query: 140 QTGISAIDKIL 150
QTG+ A+D ++
Sbjct: 149 QTGLKAVDALV 159
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 153 VFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
V G+ + + + + TG+I+ PV +LGRV + G PID
Sbjct: 76 VLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPID 118
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
+G RG + + +G ++ PV + LGR+ N G+PID+ PI + + I +
Sbjct: 66 TEGLVRGQKVLD-SGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFI 124
Query: 131 SRTYPQEMIQTGISAID 147
+ QE++ TGI +D
Sbjct: 125 EMSVEQEILVTGIKVVD 141
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 109 DKG-PPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGIDAKNTVC 167
D+G PPIL + L+++G+ SR + G S + I + +GT G+ V
Sbjct: 26 DEGLPPIL--NALEVQGRE----SRLVLEVAQHLGESTVRTIAM---DGTEGLVRGQKVL 76
Query: 168 EFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
+ +G ++ PV + LGR+ N G+PID+
Sbjct: 77 D-SGAPIKIPVGPETLGRIMNVIGEPIDE 104
>pdb|3PQS|A Chain A, The Crystal Structures Of Porcine Pathogen Aph87_tbpb
Length = 521
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 88 LRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAID 147
LR V ++ G F G DK PIL +D +EG P S + + A D
Sbjct: 213 LRYTVEANISGNRFRGKATATDKTDPILGKDSEHLEGGLYGPKSEELAGKFV-----AHD 267
Query: 148 KILLQVFEGTSGIDAKNTV 166
K L VF G G D TV
Sbjct: 268 KSLFAVFSGKRGNDVLETV 286
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 80 ICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMI 139
I + TG I+ PV +++LGRV + G ID P+ ++ + + R +E +
Sbjct: 87 IVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKAPGIIPRISVREPM 146
Query: 140 QTGISAIDKIL 150
QTGI A+D ++
Sbjct: 147 QTGIKAVDSLV 157
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 166 VCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
+ + TG I+ PV +++LGRV + G ID
Sbjct: 87 IVKRTGAIVDVPVGDELLGRVVDALGNAID 116
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 80 ICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMI 139
I + TG I+ PV +++LGRV + G ID P+ ++ + + R +E +
Sbjct: 87 IVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKAPGIIPRISVREPM 146
Query: 140 QTGISAIDKIL 150
QTGI A+D ++
Sbjct: 147 QTGIKAVDSLV 157
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 166 VCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
+ + TG I+ PV +++LGRV + G ID
Sbjct: 87 IVKRTGAIVDVPVGDELLGRVVDALGNAID 116
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 17/85 (20%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
DG RG + TG + PV + LGRVFN G+PID+ + AE+ +P
Sbjct: 61 TDGLVRGLEAVD-TGAPISVPVGKATLGRVFNVLGEPIDEQGEVNAEER--------HPI 111
Query: 131 SRTYPQ--------EMIQTGISAID 147
R P+ E+++TGI ID
Sbjct: 112 HRPAPEFEELSTADEILETGIKVID 136
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 170 TGDILRTPVSEDMLGRVFNGSGKPIDK 196
TG + PV + LGRVFN G+PID+
Sbjct: 73 TGAPISVPVGKATLGRVFNVLGEPIDE 99
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
+DG RG + + I PV E LGR+ N G+P+D I E+ I +
Sbjct: 59 SDGLRRGLDVKDLEHPI-EVPVGEATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYE 117
Query: 131 SRTYPQEMIQTGISAID 147
+ QE+++TGI ID
Sbjct: 118 ELSNSQELLETGIKVID 134
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPY 130
DG RG + + TG + PV + LGRVFN G+PID I A+ D +P +
Sbjct: 67 TDGLIRGMEVID-TGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKF 125
Query: 131 SRTYPQ-EMIQTGISAID 147
+ E+++TGI +D
Sbjct: 126 EELATEVEILETGIKVVD 143
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 170 TGDILRTPVSEDMLGRVFNGSGKPID 195
TG + PV + LGRVFN G+PID
Sbjct: 79 TGAPISVPVGQVTLGRVFNVLGEPID 104
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 71 NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI 114
DG RG + + TG L PV LGR+FN G+P+D P+
Sbjct: 82 TDGLTRGMEVID-TGAPLSVPVGGPTLGRIFNVLGEPVDNLRPV 124
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 121 DIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEG-TSGIDAKNTVCEFTGDILRTPVS 179
D GQP+N Q+++ G + + + + +G T G++ +T G L PV
Sbjct: 53 DTAGQPMNVTCEV--QQLL--GNNRVRAVAMSATDGLTRGMEVIDT-----GAPLSVPVG 103
Query: 180 EDMLGRVFNGSGKPID 195
LGR+FN G+P+D
Sbjct: 104 GPTLGRIFNVLGEPVD 119
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154)
From Thermotoga Maritima At 1.70a Resolution
Length = 232
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 10 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERI-ITFQAKYFS 68
+ D F + MG + A F E G+ +N+ F + + DP + R+ +TF+A S
Sbjct: 134 ATDQFDLAILGMGPDGHVASIFDL---ETGNKDNLVTFTDPSGDPKVPRVTLTFRALNTS 190
Query: 69 IY 70
+Y
Sbjct: 191 LY 192
>pdb|1ZTB|A Chain A, Crystal Structure Of Chorismate Synthase From
Mycobacterium Tuberculosis
pdb|2G85|A Chain A, Crystal Structure Of Chorismate Synthase From
Mycobacterium Tuberculosis At 2.22 Angstrons Of
Resolution
Length = 401
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 88 LRTPVSEDMLGRVFN-GSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMI 139
LR + ++L V + G+ P + GPP AED I+ P+ Y + +MI
Sbjct: 155 LRQALGVEVLSHVISIGASAPYE-GPPPRAEDLPAIDASPVRAYDKAAEADMI 206
>pdb|2O11|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase
pdb|2O12|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase In Complex
With Fmn
pdb|2QHF|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase In Complex
With Nca
Length = 407
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 88 LRTPVSEDMLGRVFN-GSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMI 139
LR + ++L V + G+ P + GPP AED I+ P+ Y + +MI
Sbjct: 155 LRQALGVEVLSHVISIGASAPYE-GPPPRAEDLPAIDASPVRAYDKAAEADMI 206
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 79 FICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEM 138
IC TG + D+ +NGS ID+ P+L EDY +E NP ++ +
Sbjct: 229 LICNVTGQL------SDIAYWKWNGSV--IDEDDPVLGEDYYSVE----NPANKRRSTLI 276
Query: 139 IQTGISAIDKILLQ-----VFEGTSGIDA 162
IS I+ + + T GIDA
Sbjct: 277 TVLNISEIESRFYKHPFTCFAKNTHGIDA 305
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 92 VSEDMLGRVFNGSGKPIDKGPPILAEDYLDIE----GQPINPYSRTYPQEMIQTGISAID 147
V + +LGR+ +G G+P++ + YL E +P +P R + G+ AID
Sbjct: 7 VGDALLGRLIDGIGRPMESN---IVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAID 63
Query: 148 KILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPI 194
+L GI A + V + T +LG + NG+ I
Sbjct: 64 GLLTCGIGQRIGIFAGSGVGKST-----------LLGMICNGASADI 99
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 79 FICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEM 138
IC TG + D+ +NGS ID+ P+L EDY +E NP ++ +
Sbjct: 229 LICNVTGQL------SDIAYWKWNGSV--IDEDDPVLGEDYYSVE----NPANKRRSTLI 276
Query: 139 IQTGISAIDKILLQ-----VFEGTSGIDA 162
IS I+ + + T GIDA
Sbjct: 277 TVLNISEIESRFYKHPFTCFAKNTHGIDA 305
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 79 FICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEM 138
IC TG + D+ +NGS ID+ P+L EDY +E NP ++ +
Sbjct: 231 LICNVTGQL------SDIAYWKWNGSV--IDEDDPVLGEDYYSVE----NPANKRRSTLI 278
Query: 139 IQTGISAIDKILLQ-----VFEGTSGIDA 162
IS I+ + + T GIDA
Sbjct: 279 TVLNISEIESRFYKHPFTCFAKNTHGIDA 307
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 79 FICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEM 138
IC TG + D+ +NGS ID+ P+L EDY +E NP ++ +
Sbjct: 226 LICNVTGQL------SDIAYWKWNGSV--IDEDDPVLGEDYYSVE----NPANKRRSTLI 273
Query: 139 IQTGISAIDKILLQ-----VFEGTSGIDA 162
IS I+ + + T GIDA
Sbjct: 274 TVLNISEIESRFYKHPFTCFAKNTHGIDA 302
>pdb|3CJM|A Chain A, Crystal Structure Of Putative Beta-Lactamase (Np_815223.1)
From Enterococcus Faecalis V583 At 1.50 A Resolution
Length = 282
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 14/169 (8%)
Query: 23 VNMETARFFKQ--DFEENGSMENVCLFLNLANDPTIERIITFQAKYFSIYND---GNNRG 77
V +++A+ K D EEN S V F + ND + + F+ Y D G R
Sbjct: 9 VTIDSAKHEKHTKDKEENNSANTV--FFDKINDLLVASVKEFEGTVGISYLDLETGEQRS 66
Query: 78 -SFICEF-TGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYS--RT 133
+ EF T ++ P++ + V +G K D P EDY EG I Y+
Sbjct: 67 VNGQHEFYTASTIKVPLTXLVADTVASGQKKWTDLIPYNAEEDYE--EGTGIIAYNIQPE 124
Query: 134 YPQEMIQT-GISAIDKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSED 181
YP + +Q I+ D I T G DAK + + +TP E+
Sbjct: 125 YPLKTLQEYAITYSDNIAKNXLYDTLGGDAKAKREXYQRYLHKTPSIEE 173
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 151 LQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
+QV+E TSGI V TG+ L + ++ ++F+G +P+D
Sbjct: 56 IQVYEETSGIGPGEPV-RSTGEALSVELGPGIISQMFDGIQRPLD 99
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
DK ++QV+E T+G+ V TG L + +L +++G +P++
Sbjct: 46 DKAVIQVYEETAGVRPGEPVV-GTGASLSVELGPRLLTSIYDGIQRPLE 93
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
DK ++QV+E T+G+ V TG L + +L +++G +P++
Sbjct: 46 DKAVIQVYEETAGVRPGEPVV-GTGASLSVELGPRLLTSIYDGIQRPLE 93
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
DK ++QV+E T+G+ V TG L + +L +++G +P++
Sbjct: 46 DKAVIQVYEETAGVRPGEPVV-GTGASLSVELGPRLLTSIYDGIQRPLE 93
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
DK ++QV+E T+G+ V TG L + +L +++G +P++
Sbjct: 46 DKAVIQVYEETAGVRPGEPVV-GTGASLSVELGPRLLTSIYDGIQRPLE 93
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
DK ++QV+E T+G+ V TG L + +L +++G +P++
Sbjct: 46 DKAVIQVYEETAGVRPGEPVV-GTGASLSVELGPRLLTSIYDGIQRPLE 93
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
DK ++QV+E T+G+ V TG L + +L +++G +P++
Sbjct: 46 DKAVIQVYEETAGVRPGEPVV-GTGASLSVELGPRLLTSIYDGIQRPLE 93
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
DK ++QV+E T+G+ V TG L + +L +++G +P++
Sbjct: 46 DKAVIQVYEETAGVRPGEPVV-GTGASLSVELGPGLLTSIYDGIQRPLE 93
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
DK ++QV+E T+G+ V TG L + +L +++G +P++
Sbjct: 46 DKAVIQVYEETAGVRPGEPVV-GTGASLSVELGPGLLTSIYDGIQRPLE 93
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
DK ++QV+E T+G+ V TG L + +L +++G +P++
Sbjct: 46 DKAVIQVYEETAGVRPGEPVV-GTGASLSVELGPGLLTSIYDGIQRPLE 93
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
DK ++QV+E T+G+ V TG L + +L +++G +P++
Sbjct: 46 DKAVIQVYEETAGVRPGEPVV-GTGASLSVELGPGLLTSIYDGIQRPLE 93
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
DK ++QV+E T+G+ V TG L + +L +++G +P++
Sbjct: 46 DKAVIQVYEETAGVRPGEPVV-GTGASLSVELGPGLLTSIYDGIQRPLE 93
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
DK ++QV+E T+G+ V TG L + +L +++G +P++
Sbjct: 46 DKAVIQVYEETAGVRPGEPVV-GTGASLSVELGPGLLTSIYDGIQRPLE 93
>pdb|1PBT|A Chain A, The Crystal Structure Of Tm1154, Oxidoreductase, SolDEVB
Family From Thermotoga Maritima
Length = 244
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 10 SEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERI-ITFQAKYFS 68
+ D F + G + A F E G+ +N+ F + + DP + R+ +TF+A S
Sbjct: 144 ATDQFDLAILGXGPDGHVASIFDL---ETGNKDNLVTFTDPSGDPKVPRVTLTFRALNTS 200
Query: 69 IY 70
+Y
Sbjct: 201 LY 202
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 151 LQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
+QV+E TSGI V TG+ L + ++ + F+G +P+D
Sbjct: 56 IQVYEETSGIGPGEPV-RSTGEALSVELGPGIISQXFDGIQRPLD 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,607,059
Number of Sequences: 62578
Number of extensions: 295990
Number of successful extensions: 607
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 132
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)