Query psy5597
Match_columns 204
No_of_seqs 203 out of 2075
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 21:36:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1157 FliI Flagellar biosynt 100.0 7.6E-38 1.6E-42 285.2 12.0 170 28-203 32-210 (441)
2 TIGR01041 ATP_syn_B_arch ATP s 100.0 1.9E-34 4.1E-39 268.2 13.6 172 29-203 12-194 (458)
3 PRK04196 V-type ATP synthase s 100.0 4E-34 8.6E-39 266.3 13.8 172 28-203 13-196 (460)
4 PRK09280 F0F1 ATP synthase sub 100.0 5.1E-34 1.1E-38 265.1 12.3 163 38-203 23-194 (463)
5 PRK12597 F0F1 ATP synthase sub 100.0 8.5E-34 1.9E-38 263.9 12.5 170 30-203 14-193 (461)
6 TIGR03305 alt_F1F0_F1_bet alte 100.0 8.9E-34 1.9E-38 262.8 12.3 176 14-203 4-188 (449)
7 TIGR01039 atpD ATP synthase, F 100.0 6.1E-34 1.3E-38 264.2 11.0 170 31-203 12-193 (461)
8 TIGR01040 V-ATPase_V1_B V-type 100.0 3.1E-33 6.8E-38 259.2 13.6 168 30-202 13-201 (466)
9 CHL00060 atpB ATP synthase CF1 100.0 1.8E-33 3.8E-38 262.8 11.6 162 38-202 36-210 (494)
10 PRK08927 fliI flagellum-specif 100.0 8.2E-33 1.8E-37 256.0 14.2 169 28-202 27-204 (442)
11 PRK02118 V-type ATP synthase s 100.0 4.9E-33 1.1E-37 256.8 12.6 159 37-203 21-187 (436)
12 TIGR03324 alt_F1F0_F1_al alter 100.0 1.1E-32 2.4E-37 257.7 12.8 167 27-203 36-211 (497)
13 PRK06936 type III secretion sy 100.0 1.7E-32 3.6E-37 253.7 13.7 161 36-202 39-208 (439)
14 CHL00059 atpA ATP synthase CF1 100.0 2E-32 4.3E-37 255.3 12.7 167 27-203 15-190 (485)
15 PRK08972 fliI flagellum-specif 100.0 2.9E-32 6.2E-37 252.1 13.5 164 33-203 38-209 (444)
16 PRK07165 F0F1 ATP synthase sub 100.0 2E-32 4.3E-37 256.2 12.6 169 27-203 10-192 (507)
17 PRK09281 F0F1 ATP synthase sub 100.0 3.9E-32 8.4E-37 255.1 12.6 167 27-203 36-211 (502)
18 TIGR00962 atpA proton transloc 100.0 4.3E-32 9.3E-37 254.8 12.8 167 27-203 35-210 (501)
19 PRK13343 F0F1 ATP synthase sub 100.0 1E-31 2.2E-36 251.9 12.2 167 27-203 36-211 (502)
20 PRK07960 fliI flagellum-specif 100.0 1.3E-30 2.9E-35 241.6 13.7 165 32-202 39-221 (455)
21 COG0055 AtpD F0F1-type ATP syn 100.0 1.3E-30 2.8E-35 235.5 9.4 179 14-202 7-196 (468)
22 PRK05688 fliI flagellum-specif 100.0 5.7E-30 1.2E-34 237.6 13.8 168 29-202 36-214 (451)
23 PRK09099 type III secretion sy 100.0 7.1E-30 1.5E-34 236.7 13.7 169 27-203 33-210 (441)
24 PRK05922 type III secretion sy 100.0 8.1E-30 1.7E-34 235.7 14.0 168 27-202 28-203 (434)
25 TIGR01042 V-ATPase_V1_A V-type 100.0 2.3E-30 5.1E-35 244.8 10.6 163 30-203 13-273 (591)
26 PRK07196 fliI flagellum-specif 100.0 9E-30 1.9E-34 235.5 13.4 165 32-202 29-201 (434)
27 TIGR01043 ATP_syn_A_arch ATP s 100.0 4.6E-30 1E-34 243.2 11.3 163 30-203 12-269 (578)
28 PTZ00185 ATPase alpha subunit; 100.0 4E-29 8.6E-34 234.3 14.6 167 32-202 56-245 (574)
29 PRK04192 V-type ATP synthase s 100.0 1.4E-29 3.1E-34 240.1 10.9 163 30-203 15-274 (586)
30 TIGR03498 FliI_clade3 flagella 100.0 4.5E-29 9.7E-34 230.1 13.7 170 27-202 8-186 (418)
31 TIGR03497 FliI_clade2 flagella 100.0 4.2E-29 9E-34 230.1 12.8 160 38-203 17-184 (413)
32 KOG1350|consensus 100.0 6.5E-30 1.4E-34 227.8 7.0 181 13-203 55-241 (521)
33 TIGR03496 FliI_clade1 flagella 100.0 6.7E-29 1.5E-33 228.6 13.6 168 28-203 9-184 (411)
34 PRK06820 type III secretion sy 100.0 4.9E-29 1.1E-33 231.0 12.7 157 36-202 45-209 (440)
35 PRK06315 type III secretion sy 100.0 1.5E-28 3.4E-33 227.7 13.0 162 36-202 39-211 (442)
36 PRK08472 fliI flagellum-specif 100.0 1.2E-28 2.6E-33 228.0 11.9 168 28-203 28-204 (434)
37 TIGR02546 III_secr_ATP type II 99.9 8.7E-28 1.9E-32 221.9 12.8 167 28-202 15-191 (422)
38 PRK07594 type III secretion sy 99.9 1.5E-27 3.2E-32 220.7 12.9 161 30-202 33-201 (433)
39 PRK08149 ATP synthase SpaL; Va 99.9 3.7E-27 8.1E-32 217.8 15.0 162 35-202 21-197 (428)
40 TIGR01026 fliI_yscN ATPase Fli 99.9 2.6E-27 5.7E-32 219.7 13.2 160 37-202 40-209 (440)
41 PRK06793 fliI flagellum-specif 99.9 2.4E-27 5.3E-32 219.2 12.8 166 29-203 30-203 (432)
42 PRK07721 fliI flagellum-specif 99.9 2.6E-27 5.6E-32 219.6 12.5 160 37-202 35-204 (438)
43 cd01135 V_A-ATPase_B V/A-type 99.9 3.9E-28 8.6E-33 213.0 6.4 115 87-203 1-122 (276)
44 PRK06002 fliI flagellum-specif 99.9 1.5E-26 3.3E-31 214.6 13.6 168 27-202 35-211 (450)
45 cd01133 F1-ATPase_beta F1 ATP 99.9 5.9E-27 1.3E-31 205.6 5.5 115 87-203 1-119 (274)
46 cd01132 F1_ATPase_alpha F1 ATP 99.9 1.1E-25 2.3E-30 197.6 6.2 112 88-203 2-118 (274)
47 COG1156 NtpB Archaeal/vacuolar 99.9 1E-24 2.2E-29 198.4 7.9 166 30-201 18-197 (463)
48 COG0056 AtpA F0F1-type ATP syn 99.9 2.6E-22 5.5E-27 184.6 9.6 167 28-203 37-211 (504)
49 cd01136 ATPase_flagellum-secre 99.8 1.5E-20 3.3E-25 168.7 6.5 111 87-202 1-115 (326)
50 KOG1351|consensus 99.8 5E-20 1.1E-24 163.4 4.4 161 39-200 43-222 (489)
51 COG1155 NtpA Archaeal/vacuolar 99.8 4.7E-19 1E-23 165.5 10.0 155 38-202 20-270 (588)
52 PRK14698 V-type ATP synthase s 99.8 6.1E-19 1.3E-23 177.0 8.6 166 30-203 15-281 (1017)
53 cd01134 V_A-ATPase_A V/A-type 99.7 1.2E-17 2.7E-22 151.2 3.1 79 119-203 122-204 (369)
54 PRK12608 transcription termina 99.6 4.5E-16 9.8E-21 142.1 4.1 122 72-203 57-184 (380)
55 KOG1352|consensus 99.4 2.1E-14 4.6E-19 131.4 1.9 179 8-203 15-292 (618)
56 KOG1353|consensus 99.3 1.4E-12 3.1E-17 113.7 2.0 120 74-202 75-203 (340)
57 KOG1351|consensus 99.1 2.2E-11 4.7E-16 108.7 1.5 62 2-63 193-254 (489)
58 PRK12678 transcription termina 98.7 1.3E-08 2.7E-13 97.9 4.0 76 125-202 385-466 (672)
59 PF00006 ATP-synt_ab: ATP synt 98.6 5E-09 1.1E-13 89.4 -1.0 58 141-203 1-62 (215)
60 PRK09376 rho transcription ter 98.6 4.3E-08 9.3E-13 90.7 3.6 78 124-203 136-220 (416)
61 COG1156 NtpB Archaeal/vacuolar 97.4 2.4E-05 5.2E-10 72.5 -0.6 55 147-201 52-106 (463)
62 PF02874 ATP-synt_ab_N: ATP sy 96.6 0.0068 1.5E-07 41.9 5.5 47 38-85 18-69 (69)
63 cd01128 rho_factor Transcripti 96.5 0.0018 3.9E-08 56.4 2.9 60 142-203 3-67 (249)
64 TIGR00767 rho transcription te 96.3 0.0062 1.3E-07 56.9 5.3 73 129-203 141-219 (415)
65 PRK02118 V-type ATP synthase s 90.1 0.15 3.3E-06 48.0 1.6 54 147-201 48-101 (436)
66 PRK14698 V-type ATP synthase s 88.2 0.23 5.1E-06 51.3 1.5 23 181-203 681-703 (1017)
67 PRK04192 V-type ATP synthase s 85.1 0.34 7.4E-06 47.3 0.7 52 147-199 46-97 (586)
68 TIGR01041 ATP_syn_B_arch ATP s 83.3 0.51 1.1E-05 44.8 1.0 54 147-200 47-100 (458)
69 PRK06936 type III secretion sy 82.9 0.59 1.3E-05 44.2 1.3 54 147-201 69-122 (439)
70 PRK09099 type III secretion sy 82.6 0.7 1.5E-05 43.7 1.7 53 147-200 70-122 (441)
71 PRK07594 type III secretion sy 81.4 0.83 1.8E-05 43.1 1.6 50 149-199 65-114 (433)
72 PRK08972 fliI flagellum-specif 81.1 0.77 1.7E-05 43.5 1.3 53 147-200 69-121 (444)
73 PRK09281 F0F1 ATP synthase sub 80.7 0.69 1.5E-05 44.4 0.9 52 148-200 70-121 (502)
74 COG1158 Rho Transcription term 80.6 1.7 3.7E-05 40.3 3.3 57 143-202 161-223 (422)
75 PRK07196 fliI flagellum-specif 79.6 1 2.2E-05 42.6 1.6 53 147-200 62-114 (434)
76 TIGR02546 III_secr_ATP type II 79.6 0.89 1.9E-05 42.6 1.2 53 147-200 50-102 (422)
77 PRK08472 fliI flagellum-specif 78.9 0.92 2E-05 42.8 1.1 53 147-200 64-116 (434)
78 PRK09280 F0F1 ATP synthase sub 78.8 1.2 2.6E-05 42.4 1.8 51 149-200 53-103 (463)
79 PRK06820 type III secretion sy 78.7 1.1 2.3E-05 42.5 1.5 53 147-200 71-123 (440)
80 TIGR03497 FliI_clade2 flagella 78.5 1 2.2E-05 42.2 1.2 53 147-200 44-96 (413)
81 PRK05922 type III secretion sy 78.0 1 2.2E-05 42.5 1.1 53 147-200 64-116 (434)
82 PRK08927 fliI flagellum-specif 76.7 1.3 2.8E-05 42.0 1.4 53 147-200 64-116 (442)
83 PRK04196 V-type ATP synthase s 76.6 1.4 3.1E-05 41.8 1.7 53 147-200 49-102 (460)
84 TIGR01043 ATP_syn_A_arch ATP s 76.6 1.1 2.4E-05 43.8 1.0 51 147-198 43-93 (578)
85 PRK07165 F0F1 ATP synthase sub 76.1 1.5 3.2E-05 42.3 1.6 50 149-199 47-96 (507)
86 PRK07721 fliI flagellum-specif 75.8 1.2 2.7E-05 41.9 1.0 51 147-198 65-115 (438)
87 TIGR01026 fliI_yscN ATPase Fli 74.9 1.5 3.3E-05 41.4 1.3 51 147-198 69-119 (440)
88 PRK07960 fliI flagellum-specif 74.9 1.6 3.5E-05 41.5 1.5 53 147-200 75-134 (455)
89 TIGR03498 FliI_clade3 flagella 74.9 1.4 3.1E-05 41.3 1.2 53 147-200 46-98 (418)
90 TIGR01040 V-ATPase_V1_B V-type 74.2 1.8 4E-05 41.2 1.7 51 149-200 49-100 (466)
91 PRK06315 type III secretion sy 74.1 2 4.3E-05 40.7 1.9 49 147-196 68-116 (442)
92 TIGR03305 alt_F1F0_F1_bet alte 72.3 1.8 3.9E-05 41.1 1.2 52 148-200 46-97 (449)
93 PRK05688 fliI flagellum-specif 71.9 2.3 5E-05 40.4 1.8 53 147-200 75-127 (451)
94 PRK12597 F0F1 ATP synthase sub 71.7 2.4 5.1E-05 40.4 1.8 51 149-200 52-102 (461)
95 TIGR03496 FliI_clade1 flagella 70.6 2.1 4.6E-05 40.0 1.2 51 149-200 46-96 (411)
96 TIGR03324 alt_F1F0_F1_al alter 69.6 2.1 4.5E-05 41.2 1.0 51 149-200 71-121 (497)
97 TIGR00962 atpA proton transloc 68.1 2.3 5E-05 40.9 0.9 51 149-200 70-120 (501)
98 cd01735 LSm12_N LSm12 belongs 67.9 10 0.00022 26.3 3.9 25 40-64 4-28 (61)
99 CHL00060 atpB ATP synthase CF1 66.3 3.8 8.2E-05 39.4 2.0 106 91-200 10-120 (494)
100 TIGR01039 atpD ATP synthase, F 62.0 4.4 9.6E-05 38.6 1.6 51 149-200 52-102 (461)
101 PRK13343 F0F1 ATP synthase sub 61.0 3.8 8.2E-05 39.5 1.0 49 151-200 73-121 (502)
102 PRK08149 ATP synthase SpaL; Va 60.8 3.9 8.5E-05 38.6 1.0 50 148-198 55-104 (428)
103 PRK06002 fliI flagellum-specif 60.0 5.3 0.00012 38.0 1.7 51 148-200 73-123 (450)
104 CHL00059 atpA ATP synthase CF1 59.2 4.2 9.1E-05 39.0 0.9 51 149-200 50-100 (485)
105 PRK06793 fliI flagellum-specif 57.9 4.7 0.0001 38.1 1.0 50 150-200 66-115 (432)
106 PTZ00185 ATPase alpha subunit; 56.6 6.5 0.00014 38.4 1.7 47 150-197 92-138 (574)
107 TIGR01042 V-ATPase_V1_A V-type 49.7 5.5 0.00012 39.1 -0.0 51 147-198 44-94 (591)
108 cd01394 radB RadB. The archaea 37.5 12 0.00027 30.7 0.3 36 139-178 1-44 (218)
109 cd01122 GP4d_helicase GP4d_hel 36.5 29 0.00062 29.5 2.4 50 137-190 11-67 (271)
110 PRK09361 radB DNA repair and r 27.7 21 0.00045 29.6 0.1 41 136-178 2-48 (225)
111 PF13998 MgrB: MgrB protein 25.8 46 0.00099 19.8 1.3 15 137-151 14-28 (29)
112 TIGR03877 thermo_KaiC_1 KaiC d 22.2 25 0.00055 29.7 -0.4 55 138-197 2-64 (237)
No 1
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=7.6e-38 Score=285.20 Aligned_cols=170 Identities=21% Similarity=0.331 Sum_probs=146.5
Q ss_pred cceeeeccccccCccCEEEEEecCCC-CeEEEEeeeccceEE--EcC--CcccCCccEEEecCCeeEEeCCccccccccc
Q psy5597 28 ARFFKQDFEENGSMENVCLFLNLAND-PTIERIITFQAKYFS--IYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFN 102 (204)
Q Consensus 28 ~~~~v~~~~~~~~iGd~c~I~~~~~~-~~~aEVVg~~~~~ll--~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD 102 (204)
.|..+++..+.+++|++|.|+...+. ..+||||||+...++ |+. .|+.+| ++|.++++++++++|++|||||+|
T Consensus 32 ~G~~lea~g~~~~iGelc~i~~~~~~~~~~aEVvgf~~~~~~L~p~~~~~gv~~g-~~V~~~~~~~~v~~g~~lLGRVld 110 (441)
T COG1157 32 TGLLLEAVGPQARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPVEGVSPG-AEVVPTGRPLSVPVGDALLGRVLD 110 (441)
T ss_pred eeeEEEEecCCCcccceEEEEecCCCCceeEEEEEEcCCeEEEeccCccccCCCC-CEEEecCCccccccChhhhhhhhc
Confidence 35677888889999999999986443 339999999955444 543 579999 899999999999999999999999
Q ss_pred ccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccc
Q psy5597 103 GSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPV 178 (204)
Q Consensus 103 ~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~ 178 (204)
++|+|||+.+.++...++|++.+||||+.|++|++||.||||+||+|+|.-.|++.|+| .||+ +||+|+++++.
T Consensus 111 ~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKS--tLLgMiar~t~ 188 (441)
T COG1157 111 GLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKS--TLLGMIARNTE 188 (441)
T ss_pred cCCCcCcCCCCCCCcccccccCCCCCchhcccccccccccceeeecccccccCceeEEEecCCCcHH--HHHHHHhcccc
Confidence 99999999888888888999999999999999999999999999999995555555554 3555 79999999986
Q ss_pred cCCCCEEEEEeeeccccccchhccc
Q psy5597 179 SEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 179 s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
.+ ++|.+.||||+||++||+++
T Consensus 189 aD---v~ViaLIGERGREVrEFIE~ 210 (441)
T COG1157 189 AD---VNVIALIGERGREVREFIEK 210 (441)
T ss_pred CC---EEEEEEeeccchhHHHHHHH
Confidence 55 99999999999999999864
No 2
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=1.9e-34 Score=268.19 Aligned_cols=172 Identities=33% Similarity=0.526 Sum_probs=148.5
Q ss_pred ceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccccc
Q psy5597 29 RFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGS 104 (204)
Q Consensus 29 ~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~l 104 (204)
.+.++++. .+++||+|.|...++....|||++|+ .+.++++. .|+..|+.+|.+|+++++||||++|||||+|++
T Consensus 12 iv~v~g~~-~~~~ge~~~i~~~~~~~~~geVv~~~~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v~vg~~lLGRViD~~ 90 (458)
T TIGR01041 12 LVFVEGVE-PVAYNEIVEIETPDGEKRRGQVLDSSEGLAVVQVFEGTTGLDPTGTKVRFTGETLKLPVSEDMLGRILNGS 90 (458)
T ss_pred EEEEEccC-CCCcCCEEEEEcCCCcEEEEEEEEEECCEEEEEEecCCcCcCCCCcEEEECCCceEEEcChhhccCEEccC
Confidence 36666665 89999999996433445789999999 56666664 579899545999999999999999999999999
Q ss_pred ceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccC
Q psy5597 105 GKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSE 180 (204)
Q Consensus 105 G~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~ 180 (204)
|+|||+++++..++++|++++||||++|+++++||+||||+||+|+|...|++.||+ ++|| +++.+++++...+
T Consensus 91 G~plD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs--~L~~~ia~~~~ad 168 (458)
T TIGR01041 91 GEPIDGGPEIVPDERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHN--ELAAQIARQATVR 168 (458)
T ss_pred CcccCCCCCCCccceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCCCCCHH--HHHHHHHHhhccc
Confidence 999999888777778999999999999999999999999999999998888888886 5787 6999999987544
Q ss_pred ---CCCEEEEEeeeccccccchhccc
Q psy5597 181 ---DMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 181 ---~~~~~Vf~giGer~~e~~el~~~ 203 (204)
+.+++||++||||+||+.||++.
T Consensus 169 ~~~~~~v~V~~~iGERgrEv~efi~~ 194 (458)
T TIGR01041 169 GEESEFAVVFAAMGITYEEANFFMKD 194 (458)
T ss_pred CCCCceEEEEEEccccchHHHHHHHH
Confidence 45699999999999999999863
No 3
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=4e-34 Score=266.28 Aligned_cols=172 Identities=33% Similarity=0.524 Sum_probs=148.9
Q ss_pred cceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--Cccc-CCccEEEecCCeeEEeCCccccccccc
Q psy5597 28 ARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNN-RGSFICEFTGDILRTPVSEDMLGRVFN 102 (204)
Q Consensus 28 ~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~-~Gg~~V~~tg~~~~Vpvg~~lLGRViD 102 (204)
.-+.+++++ .+++||+|.|...++....|||++|+ .+.++++. .|+. .| ++|.+|+++++||+|++|||||+|
T Consensus 13 ~~v~v~g~~-~~~~ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~t~gl~i~G-~~V~~tg~~~~V~vg~~lLGRVvD 90 (460)
T PRK04196 13 PLLFVEGVE-GVAYGEIVEIELPNGEKRRGQVLEVSEDKAVVQVFEGTTGLDLKD-TKVRFTGEPLKLPVSEDMLGRIFD 90 (460)
T ss_pred cEEEEeccC-CCCCCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEccCCCCCCCCC-CEEEeCCCccEEEcCcccccCEEC
Confidence 346777776 78999999996434445799999999 56666664 5788 78 899999999999999999999999
Q ss_pred ccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccc
Q psy5597 103 GSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPV 178 (204)
Q Consensus 103 ~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~ 178 (204)
++|+|||+++++....++|+++.||||++|+++++||+||||+||+|+|...|++.|++ ++|| +++.++++++.
T Consensus 91 ~~G~PlD~~~~i~~~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs--~L~~~ia~~~~ 168 (460)
T PRK04196 91 GLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHN--ELAAQIARQAK 168 (460)
T ss_pred ccCCCccCCCCCCCCccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCCCcc--HHHHHHHHhhh
Confidence 99999999988876777899999999999999999999999999999998888888886 5777 69999999874
Q ss_pred cC---CCCEEEEEeeeccccccchhccc
Q psy5597 179 SE---DMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 179 s~---~~~~~Vf~giGer~~e~~el~~~ 203 (204)
.+ ..+++||++||||+||+.||++.
T Consensus 169 ~d~~~~~~v~V~~~iGeRgrEv~e~~~~ 196 (460)
T PRK04196 169 VLGEEENFAVVFAAMGITFEEANFFMED 196 (460)
T ss_pred hccCCCceEEEEEEeccccHHHHHHHHH
Confidence 43 45799999999999999999864
No 4
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=5.1e-34 Score=265.13 Aligned_cols=163 Identities=23% Similarity=0.251 Sum_probs=143.6
Q ss_pred ccCccCEEEEEecCCCCeEEEEee-ecc--ceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccceeecCCC
Q psy5597 38 NGSMENVCLFLNLANDPTIERIIT-FQA--KYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGP 112 (204)
Q Consensus 38 ~~~iGd~c~I~~~~~~~~~aEVVg-~~~--~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~PiDg~~ 112 (204)
.+++||+|.|...++..+.||||+ |+. ..++++. .|+..| ++|.+|+++++||+|++|||||+|++|+|||+.+
T Consensus 23 ~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G-~~V~~tg~~~~v~vg~~lLGRViD~~G~pld~~~ 101 (463)
T PRK09280 23 LPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRG-MEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKG 101 (463)
T ss_pred CccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCC-CEEEeCCCceEEEcChhhcCCEEeeeccccCCCC
Confidence 679999999952223468999999 884 4455664 679999 8999999999999999999999999999999998
Q ss_pred CCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCCCEEEEE
Q psy5597 113 PILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDMLGRVFN 188 (204)
Q Consensus 113 ~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~~~Vf~ 188 (204)
++...++||++.+||||++|.++++||+||||+||+|+|...|++.|++ +||| +++.+++++...++..++||+
T Consensus 102 ~~~~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~GvGKt--~Ll~~i~~~~~~~~~~v~V~~ 179 (463)
T PRK09280 102 PIGAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT--VLIQELINNIAKEHGGYSVFA 179 (463)
T ss_pred CcCccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecCCCCChh--HHHHHHHHHHHhcCCCEEEEE
Confidence 8777778999999999999999999999999999999999888888886 5888 699999988766656799999
Q ss_pred eeeccccccchhccc
Q psy5597 189 GSGKPIDKAVRLLRY 203 (204)
Q Consensus 189 giGer~~e~~el~~~ 203 (204)
+||||+||+.|||+.
T Consensus 180 liGER~rEv~efi~~ 194 (463)
T PRK09280 180 GVGERTREGNDLYHE 194 (463)
T ss_pred EeccCcHHHHHHHHH
Confidence 999999999999863
No 5
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=8.5e-34 Score=263.87 Aligned_cols=170 Identities=22% Similarity=0.265 Sum_probs=147.5
Q ss_pred eeeecccc-ccCccCEEEEEecCCCCeEEEEeee-cc--ceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccc
Q psy5597 30 FFKQDFEE-NGSMENVCLFLNLANDPTIERIITF-QA--KYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNG 103 (204)
Q Consensus 30 ~~v~~~~~-~~~iGd~c~I~~~~~~~~~aEVVg~-~~--~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~ 103 (204)
+.+.+... .+++||+|.|...+ ..+.+||++| +. ..++++. .|+..| ++|.+|+++++||+|++|||||+|+
T Consensus 14 i~v~g~~~~~~~ige~~~i~~~~-~~~~~eVv~~l~~~~v~l~~~~~~~gl~~G-~~V~~tg~~~~v~vg~~llGRVid~ 91 (461)
T PRK12597 14 VDVEFEEGALPPINQALTVHDDG-GPTLLEVKQHLDETTVRAIALGSTSGLARG-DEVRNTGGPIEVPVGEAVLGRLLDV 91 (461)
T ss_pred EEEEECCCCCcCccCEEEEecCC-CcEEEEEEEEcCCCeEEEEEecCccCCCCC-CEEEeCCCceEEEcChhhcCCEEee
Confidence 55555522 29999999996422 3588999999 64 5566664 679999 8999999999999999999999999
Q ss_pred cceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhccccc
Q psy5597 104 SGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVS 179 (204)
Q Consensus 104 lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s 179 (204)
+|+|||+.+++...++||++.+||||++|+++++||+||||+||+|+|...|++.|++ .||| +++++++++...
T Consensus 92 ~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G~GKt--~Ll~~~~~~~~~ 169 (461)
T PRK12597 92 LGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKT--VLMMELIFNISK 169 (461)
T ss_pred ccccccCCCCCCCcceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCCCChh--HHHHHHHHHHHh
Confidence 9999999988776678999999999999999999999999999999999999988886 5888 699999999875
Q ss_pred CCCCEEEEEeeeccccccchhccc
Q psy5597 180 EDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 180 ~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
.+..++||++||||+||+.|||+.
T Consensus 170 ~~~dv~V~~liGER~rEv~ef~~~ 193 (461)
T PRK12597 170 QHSGSSVFAGVGERSREGHELYHE 193 (461)
T ss_pred hCCCEEEEEcCCcchHHHHHHHHH
Confidence 567899999999999999999863
No 6
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=8.9e-34 Score=262.79 Aligned_cols=176 Identities=20% Similarity=0.287 Sum_probs=154.0
Q ss_pred eEEEEEeeeeeccccceeeeccccccCccCEEEEEecCCCCeEEEEee-ec--cceEEEcC--CcccCCccEEEecCCee
Q psy5597 14 FAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIIT-FQ--AKYFSIYN--DGNNRGSFICEFTGDIL 88 (204)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg-~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~ 88 (204)
..|++++++|+|+. ..+.+.+.+.+.. +.++.+||++ |+ ...++++. .|+..| ++|.+|++++
T Consensus 4 ~~i~g~vvdv~f~~---------~~p~i~~~l~~~~--~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G-~~V~~tg~~~ 71 (449)
T TIGR03305 4 VAVRGSIVDVRFDG---------ELPAIHSVLRAGR--EGEVVVEVLSQLDAHHVRGIALTPTQGLARG-MPVRDSGGPL 71 (449)
T ss_pred EEEEcCEEEEEeCC---------CCcchhheEEecC--CCcEEEeeeeEecCCeEEEEEccCcccCCCC-CEEEecCCce
Confidence 47999999999952 2788899888864 3578999999 88 45555553 679999 8999999999
Q ss_pred EEeCCcccccccccccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCc
Q psy5597 89 RTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKN 164 (204)
Q Consensus 89 ~Vpvg~~lLGRViD~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~k 164 (204)
+||||++|||||+|++|+|||+++++...+++|++++||||++|+++++||+||||+||+|+|...|++.|++ ++|
T Consensus 72 ~VpVg~~lLGRVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~GK 151 (449)
T TIGR03305 72 KAPVGKPTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGK 151 (449)
T ss_pred EEEcChhhcCCEEccCccccCCCCCCCCccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCCh
Confidence 9999999999999999999999988766677899999999999999999999999999999999999988886 588
Q ss_pred eehhhhhhhhcccccCCCCEEEEEeeeccccccchhccc
Q psy5597 165 TVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 165 tv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
| +++.++++|....+.+++||++||||.||+.|||+.
T Consensus 152 t--~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~ 188 (449)
T TIGR03305 152 T--VLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYRE 188 (449)
T ss_pred h--HHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHH
Confidence 8 699999999654456899999999999999999863
No 7
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=6.1e-34 Score=264.20 Aligned_cols=170 Identities=24% Similarity=0.278 Sum_probs=146.1
Q ss_pred eeeccccccCccCEE---EEEecCCCCeEEEEee-ecc--ceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccc
Q psy5597 31 FKQDFEENGSMENVC---LFLNLANDPTIERIIT-FQA--KYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFN 102 (204)
Q Consensus 31 ~v~~~~~~~~iGd~c---~I~~~~~~~~~aEVVg-~~~--~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD 102 (204)
.+++....+++|++| .|...++..+.+|||+ |+. ..++++. .|+..| +.|.+|+++++||+|++|||||+|
T Consensus 12 ~ie~~~~~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G-~~V~~t~~~~~i~vg~~lLGRViD 90 (461)
T TIGR01039 12 VVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRG-LEVIDTGAPISVPVGKETLGRIFN 90 (461)
T ss_pred EEEEEECCCCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCC-CEEEeCCCceEEEcChhhcCCEEc
Confidence 344444588999999 7743233258999999 884 4455553 579999 899999999999999999999999
Q ss_pred ccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccc
Q psy5597 103 GSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPV 178 (204)
Q Consensus 103 ~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~ 178 (204)
++|+|||+.+++...++||++.+||||++|+++++||+||||+||+|+|...|++.|++ .||| +++.++++|..
T Consensus 91 ~~G~pid~~~~~~~~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~G~GKt--~L~~~~~~~~~ 168 (461)
T TIGR01039 91 VLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT--VLIQELINNIA 168 (461)
T ss_pred cCCcccCCCCCCCCCcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeecCCCCChH--HHHHHHHHHHH
Confidence 99999999887766677899999999999999999999999999999999999988886 5888 69999999876
Q ss_pred cCCCCEEEEEeeeccccccchhccc
Q psy5597 179 SEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 179 s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
.++..++||++||||+||+.|||+.
T Consensus 169 ~~~~~v~V~alIGER~rEv~ef~~~ 193 (461)
T TIGR01039 169 KEHGGYSVFAGVGERTREGNDLYHE 193 (461)
T ss_pred hcCCCeEEEEEecCCchHHHHHHHH
Confidence 6667899999999999999999974
No 8
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=3.1e-33 Score=259.21 Aligned_cols=168 Identities=43% Similarity=0.684 Sum_probs=142.6
Q ss_pred eeeeccccccCccCEEEEEecCCCCeEEEEeeecc--ceEEEcC--CcccC-CccEEEecCCeeEEeCCccccccccccc
Q psy5597 30 FFKQDFEENGSMENVCLFLNLANDPTIERIITFQA--KYFSIYN--DGNNR-GSFICEFTGDILRTPVSEDMLGRVFNGS 104 (204)
Q Consensus 30 ~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~~--~~ll~~~--~gi~~-Gg~~V~~tg~~~~Vpvg~~lLGRViD~l 104 (204)
+.+.+++ .+++||+|.|+..++....|||++|+. ..++++. +|+.. | ++|.+|+++++||||++|||||+|++
T Consensus 13 i~~~g~~-~~~~Ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~~~gi~~~g-~~V~~t~~~~~v~vg~~lLGRVid~~ 90 (466)
T TIGR01040 13 VILDNVK-FPRFAEIVNLTLPDGTVRSGQVLEVSGNKAVVQVFEGTSGIDAKK-TTCEFTGDILRTPVSEDMLGRVFNGS 90 (466)
T ss_pred EEEECCC-CCCcCCEEEEEeCCCCEEEEEEEEEeCCeEEEEEcCCCCCcccCC-CEEEECCCccEEEcCcccccCEECcc
Confidence 6677766 899999999973344447899999994 5555654 57887 7 89999999999999999999999999
Q ss_pred ceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccc--
Q psy5597 105 GKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPV-- 178 (204)
Q Consensus 105 G~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~-- 178 (204)
|+|||+++++..+.++|++++||||++|+++++||+||||+||+|+|...|++.|++ ++|| ++++++++++.
T Consensus 91 G~piD~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsGvGKs--~L~~~i~~~~~~~ 168 (466)
T TIGR01040 91 GKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHN--EIAAQICRQAGLV 168 (466)
T ss_pred ccccCCCCCCCCCceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCCCCHH--HHHHHHHHhhccc
Confidence 999999988776777899999999999999999999999999999997777777775 4666 79999998864
Q ss_pred ----c------CCCCEEEEEeeeccccccchhcc
Q psy5597 179 ----S------EDMLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 179 ----s------~~~~~~Vf~giGer~~e~~el~~ 202 (204)
+ .+.+++||+++||| +|+.||+.
T Consensus 169 ~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~ 201 (466)
T TIGR01040 169 KLPTKDVHDGHEDNFAIVFAAMGVN-METARFFK 201 (466)
T ss_pred cccccccccccCCceEEEEEEeeee-hHHHHHHH
Confidence 1 24569999999999 88888764
No 9
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=1.8e-33 Score=262.76 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=139.3
Q ss_pred ccCccCEEEEEecC--CC--CeEEEEeeecc---ceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccceee
Q psy5597 38 NGSMENVCLFLNLA--ND--PTIERIITFQA---KYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPI 108 (204)
Q Consensus 38 ~~~iGd~c~I~~~~--~~--~~~aEVVg~~~---~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~Pi 108 (204)
.+.+|++|.|...+ +. .+.+||++|+. ..++++. .|+..| ++|.+|+++++||+|++|||||+|++|+||
T Consensus 36 iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G-~~V~~tg~~~~vpvg~~lLGRVid~~G~pi 114 (494)
T CHL00060 36 MPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRG-MEVIDTGAPLSVPVGGATLGRIFNVLGEPV 114 (494)
T ss_pred cCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCC-CEEEeCCCcceeecchhhcCCEEeecCccc
Confidence 35669999995422 21 48999999984 4455553 579999 899999999999999999999999999999
Q ss_pred cCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCCCE
Q psy5597 109 DKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDMLG 184 (204)
Q Consensus 109 Dg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~~ 184 (204)
|+++++...+++|++..||||++|+++++||+||||+||+|+|...|++.|++ +||| +++.++++|....+.++
T Consensus 115 Dg~~~~~~~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkGQR~gIfgg~GvGKs--~L~~~~~~~~~~~~~dv 192 (494)
T CHL00060 115 DNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKT--VLIMELINNIAKAHGGV 192 (494)
T ss_pred CCCCCCCCCccccccCCCcCchhcccccceeecCceeeeccCCcccCCEEeeecCCCCChh--HHHHHHHHHHHHhcCCe
Confidence 99988776677899999999999999999999999999999999888888886 5888 69999998844334579
Q ss_pred EEEEeeeccccccchhcc
Q psy5597 185 RVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 185 ~Vf~giGer~~e~~el~~ 202 (204)
+||++||||+||+.|||+
T Consensus 193 ~V~~lIGERgrEv~efi~ 210 (494)
T CHL00060 193 SVFGGVGERTREGNDLYM 210 (494)
T ss_pred EEEEEeccCchHHHHHHH
Confidence 999999999999999986
No 10
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.2e-33 Score=255.95 Aligned_cols=169 Identities=18% Similarity=0.167 Sum_probs=144.6
Q ss_pred cceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccc
Q psy5597 28 ARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNG 103 (204)
Q Consensus 28 ~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~ 103 (204)
..+.+.+.+..+++||+|.|...++..+.+||++|+ ...++++. .|+..| ++|.+|+++++||+|++|||||+|+
T Consensus 27 ~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~V~~tg~~~~v~vg~~llGRVid~ 105 (442)
T PRK08927 27 LLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRGDRALLMPFGPLEGVRRG-CRAVIANAAAAVRPSRAWLGRVVNA 105 (442)
T ss_pred cEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCccCCCCC-CEEEeCCCccEEECChhhCCCEEcc
Confidence 346777776688999999996544435899999998 44555553 579999 8999999999999999999999999
Q ss_pred cceeecCCCCCCCC-cceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccc
Q psy5597 104 SGKPIDKGPPILAE-DYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPV 178 (204)
Q Consensus 104 lG~PiDg~~~~~~~-~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~ 178 (204)
+|+|||+++++... .++|++++||||++|+++++||+||||+||+|+|...+++.+++ .+|| +|+.+++++..
T Consensus 106 ~G~piDg~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~GKT--tLL~~I~~~~~ 183 (442)
T PRK08927 106 LGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKS--VLLSMLARNAD 183 (442)
T ss_pred CCCCccCCCCCCCCcccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCCCCCHH--HHHHHHHhccC
Confidence 99999999877654 57899999999999999999999999999999998777777775 4777 78898888763
Q ss_pred cCCCCEEEEEeeeccccccchhcc
Q psy5597 179 SEDMLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 179 s~~~~~~Vf~giGer~~e~~el~~ 202 (204)
. ..+||++||||.||+.||++
T Consensus 184 ~---d~~v~~~iGER~rEv~ef~~ 204 (442)
T PRK08927 184 A---DVSVIGLIGERGREVQEFLQ 204 (442)
T ss_pred C---CEEEEEEEecCcHHHHHHHH
Confidence 3 48899999999999999984
No 11
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=4.9e-33 Score=256.84 Aligned_cols=159 Identities=26% Similarity=0.383 Sum_probs=137.2
Q ss_pred cccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccceeecCCC
Q psy5597 37 ENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGP 112 (204)
Q Consensus 37 ~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~PiDg~~ 112 (204)
+.+++||+|.|...++ ...+||++++ .+.++++. .|+.+| ++|.+|+++++||||++|||||+|++|+|||+++
T Consensus 21 ~~~~~ge~~~i~~~~~-~~~geVi~~~~~~v~~~~~~~t~Gl~~g-~~V~~tg~~~~vpvg~~lLGRV~d~~G~PiD~~~ 98 (436)
T PRK02118 21 EGVGYGELATVERKDG-SSLAQVIRLDGDKVTLQVFGGTRGISTG-DEVVFLGRPMQVTYSESLLGRRFNGSGKPIDGGP 98 (436)
T ss_pred CCCCCCCEEEEEcCCC-CEEEEEEEEcCCEEEEEEecCCcCCCCC-CEEEeCCCceEEEcCccccCCEEccCCcccCCCC
Confidence 4699999999975444 5899999998 45666664 689999 8999999999999999999999999999999887
Q ss_pred CCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCCCEEEEE
Q psy5597 113 PILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDMLGRVFN 188 (204)
Q Consensus 113 ~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~~~Vf~ 188 (204)
++.. +.+|++++||||++|.++++||+||||+||+|+|...|++.||+ .+|+ +|+++++++.. .+++||+
T Consensus 99 ~~~~-~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~--~L~~~ia~~~~---~~v~Vfa 172 (436)
T PRK02118 99 ELEG-EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYN--ALLARIALQAE---ADIIILG 172 (436)
T ss_pred CCCc-ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHH--HHHHHHHHhhC---CCeEEEE
Confidence 7754 44899999999999999999999999999999998777777775 3565 68888888863 3589999
Q ss_pred eeeccccccchhccc
Q psy5597 189 GSGKPIDKAVRLLRY 203 (204)
Q Consensus 189 giGer~~e~~el~~~ 203 (204)
+||||.||++|||+.
T Consensus 173 ~iGeR~rE~~ef~~~ 187 (436)
T PRK02118 173 GMGLTFDDYLFFKDT 187 (436)
T ss_pred EeccchhHHHHHHHH
Confidence 999999999999974
No 12
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=1.1e-32 Score=257.72 Aligned_cols=167 Identities=19% Similarity=0.222 Sum_probs=143.8
Q ss_pred ccceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccc
Q psy5597 27 TARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFN 102 (204)
Q Consensus 27 ~~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD 102 (204)
.+-+.+.|+ ..+++||+|.|. + .+.|||++++ ...++++. .|+..| +.|.+|+++++||||++|||||+|
T Consensus 36 g~ii~v~gl-~~~~~gEl~~i~---~-~~~g~Vi~l~~~~v~~~~l~~~~gi~~G-~~V~~tg~~~~vpvg~~llGRVvd 109 (497)
T TIGR03324 36 TGIARVHGL-PGVGFEELLRFP---G-GLLGIAFNVDEDEVGVVLLGEYSHLQAG-DEVERTGRVMDVPVGDGLLGRVVD 109 (497)
T ss_pred ceEEEEEcc-CCCCcCCEEEEC---C-CcEEEEEEEcCCeEEEEEecCCcCCcCC-CEEEECCCCCeEECCHhhCcCEEC
Confidence 334666664 489999999993 2 3789999999 45555554 579999 899999999999999999999999
Q ss_pred ccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhh-hhhhhccc
Q psy5597 103 GSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEF-TGDILRTP 177 (204)
Q Consensus 103 ~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l-~~~~~~~~ 177 (204)
++|+|||+++++...++||++.+||++++|+++++||+||||+||+|+|...|++.|++ +||| ++ +++++++.
T Consensus 110 ~lG~PiDg~~~~~~~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~pigrGQR~~Ifg~~g~GKT--~Lal~~I~~q~ 187 (497)
T TIGR03324 110 PLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKT--AIAIDTILNQK 187 (497)
T ss_pred CCCCCcCCCCCCCCCceeehhccCcCccccCCCCchhhcCCEEEeccCCcccCCEEEeecCCCCCHH--HHHHHHHHHhc
Confidence 99999999988877778999999999999999999999999999999999999988886 5888 56 67888886
Q ss_pred ccCCCCEEEEEeeeccccccchhccc
Q psy5597 178 VSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 178 ~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
.+ .+.+||++||||++|+.||++.
T Consensus 188 ~~--dv~~V~~~IGeR~rev~e~i~~ 211 (497)
T TIGR03324 188 GR--NVLCIYCAIGQRASAVAKVVAN 211 (497)
T ss_pred CC--CcEEEEEEeccCcHHHHHHHHH
Confidence 33 3459999999999999999874
No 13
>PRK06936 type III secretion system ATPase; Provisional
Probab=99.98 E-value=1.7e-32 Score=253.72 Aligned_cols=161 Identities=20% Similarity=0.287 Sum_probs=141.3
Q ss_pred ccccCccCEEEEEecCCC-CeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccceeecC
Q psy5597 36 EENGSMENVCLFLNLAND-PTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDK 110 (204)
Q Consensus 36 ~~~~~iGd~c~I~~~~~~-~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~PiDg 110 (204)
...+++||+|.|...++. .+.+|||+|+ .+.++++. .|+..| ++|.+|+++++||+|++|||||+|++|+|||+
T Consensus 39 ~~~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~V~~tg~~~~v~vg~~lLGRV~d~~G~plD~ 117 (439)
T PRK06936 39 VPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLTPLGEMYGISSN-TEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDG 117 (439)
T ss_pred eCCCCCCCEEEEecCCCCcceEEEEEEEECCeEEEEecCCCCCCCCC-CEEEeCCCceEEEeCccccCCEECCCCCccCC
Confidence 458999999999743233 5899999999 56666664 679999 89999999999999999999999999999999
Q ss_pred CCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCCCEEE
Q psy5597 111 GPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDMLGRV 186 (204)
Q Consensus 111 ~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~~~V 186 (204)
++++...+++|++++||||++|+++++||+||||+||.|+|...|++.|++ .+|| +++.+++++... .++|
T Consensus 118 ~~~~~~~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKS--tLl~~Ia~~~~~---dv~V 192 (439)
T PRK06936 118 GHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKS--TLLASLIRSAEV---DVTV 192 (439)
T ss_pred CCCCCccceeeccCCCCChHHccccCCCCcCCcceeeeeEEecCCCEEEEECCCCCChH--HHHHHHhcCCCC---CEEE
Confidence 988776777899999999999999999999999999999998777777775 5787 789999888744 4899
Q ss_pred EEeeeccccccchhcc
Q psy5597 187 FNGSGKPIDKAVRLLR 202 (204)
Q Consensus 187 f~giGer~~e~~el~~ 202 (204)
|++||||+||+.||++
T Consensus 193 ~~liGERgrEv~ef~~ 208 (439)
T PRK06936 193 LALIGERGREVREFIE 208 (439)
T ss_pred EEEEccCcHHHHHHHH
Confidence 9999999999999985
No 14
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=99.98 E-value=2e-32 Score=255.29 Aligned_cols=167 Identities=24% Similarity=0.199 Sum_probs=144.7
Q ss_pred ccceeeeccccccCccCEEEEEecCCCCeEEEEeeecc--ceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccc
Q psy5597 27 TARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQA--KYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFN 102 (204)
Q Consensus 27 ~~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~~--~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD 102 (204)
.+-+.+.|++ .+++||+|.+. ++ ..|||++++. ..++++. .|+..| +.|..|++.++||+|++|||||+|
T Consensus 15 ~~ii~v~Gl~-~~~~ge~~~i~--~~--~~g~vi~~~~~~v~~~~l~~~~gi~~G-~~V~~tg~~~~vpvg~~llGRVvd 88 (485)
T CHL00059 15 DGIARIYGLD-EVMAGELVEFE--DG--TIGIALNLESNNVGVVLMGDGLMIQEG-SSVKATGKIAQIPVSEAYLGRVVN 88 (485)
T ss_pred ccEEEEeccc-cCCcCCEEEEC--CC--CEEEEEEEcCCEEEEEEeeCCCCCCCC-CEEEECCCcceEEcCHhhcCCEEC
Confidence 4558888887 79999999994 23 6899999984 4555553 579999 899999999999999999999999
Q ss_pred ccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhh-hhhhhccc
Q psy5597 103 GSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEF-TGDILRTP 177 (204)
Q Consensus 103 ~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l-~~~~~~~~ 177 (204)
++|+|||+++++...+++|++.+||+|++|+++++||+||||+||+|+|...|++.|++ +||| ++ +++++++.
T Consensus 89 ~lG~piDg~~~~~~~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt--~Lal~~I~~q~ 166 (485)
T CHL00059 89 ALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKT--AVATDTILNQK 166 (485)
T ss_pred CCCCeeCCCCCcCCCccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCCCHH--HHHHHHHHhcc
Confidence 99999999988877777899999999999999999999999999999998888888886 5888 57 67777774
Q ss_pred ccCCCCEEEEEeeeccccccchhccc
Q psy5597 178 VSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 178 ~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
+..+.|||++||||.+|+.||++.
T Consensus 167 --~~dv~cV~~~IGer~rev~e~~~~ 190 (485)
T CHL00059 167 --GQNVICVYVAIGQKASSVAQVVTT 190 (485)
T ss_pred --cCCeEEEEEEecCCchHHHHHHHH
Confidence 334577999999999999999864
No 15
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=99.98 E-value=2.9e-32 Score=252.08 Aligned_cols=164 Identities=21% Similarity=0.287 Sum_probs=140.6
Q ss_pred eccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccceee
Q psy5597 33 QDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPI 108 (204)
Q Consensus 33 ~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~Pi 108 (204)
++-+..+++||+|.|...+ ..+.||||+|+ .+.++++. .|+..| ++|.+|+++++||+|++|||||+|++|+||
T Consensus 38 ~~~g~~~~ige~~~i~~~~-~~~~~EVv~~~~~~~~l~~~~~~~gi~~g-~~V~~tg~~~~v~vg~~llGRVid~~G~pl 115 (444)
T PRK08972 38 EATGCRAPVGSLCSIETMA-GELEAEVVGFDGDLLYLMPIEELRGVLPG-ARVTPLGEQSGLPVGMSLLGRVIDGVGNPL 115 (444)
T ss_pred EEeeCCCCCCCEEEEecCC-CcEEEEEEEecCCEEEEEECCCcCCCCCC-CEEEECCCccEEEcChhhcCCeECCCCCCc
Confidence 3333479999999995433 35899999998 45555653 679999 899999999999999999999999999999
Q ss_pred cCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCCCE
Q psy5597 109 DKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDMLG 184 (204)
Q Consensus 109 Dg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~~ 184 (204)
|+++++..++++|++.+||||++|.++++||+||||+||.++|...|++.|+. .+|| +|+.+++++... ++
T Consensus 116 D~~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~GqrigI~G~sG~GKS--TLL~~I~~~~~~---dv 190 (444)
T PRK08972 116 DGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKS--VLLGMMTRGTTA---DV 190 (444)
T ss_pred CCCCCCCCCccccccCCCCChhhcCCCCCcccccceeecceEEEcCCCEEEEECCCCCChh--HHHHHhccCCCC---CE
Confidence 99988877778999999999999999999999999999999998777777774 5787 788888876533 48
Q ss_pred EEEEeeeccccccchhccc
Q psy5597 185 RVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 185 ~Vf~giGer~~e~~el~~~ 203 (204)
+||++||||+||+.||++.
T Consensus 191 ~Vi~lIGER~rEv~efi~~ 209 (444)
T PRK08972 191 IVVGLVGERGREVKEFIEE 209 (444)
T ss_pred EEEEEEcCChHHHHHHHHH
Confidence 9999999999999999863
No 16
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=99.98 E-value=2e-32 Score=256.19 Aligned_cols=169 Identities=14% Similarity=0.054 Sum_probs=144.7
Q ss_pred ccceeeeccccccCccCEEEEEecCCCCeEEEEeeecc--ceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccc
Q psy5597 27 TARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQA--KYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFN 102 (204)
Q Consensus 27 ~~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~~--~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD 102 (204)
.+-+.+.|+. .+++||+|.+.+ +....|+|++++. +.++++. .|+..| ++|.+||++++||||++|||||+|
T Consensus 10 ~~i~~v~Gl~-~~~~ge~~~~~~--~~~~~g~V~~~~~~~v~~~~l~~~~gi~~G-~~V~~tg~~~~vpvg~~lLGRVvd 85 (507)
T PRK07165 10 DYIVEVKGEY-DYQQNQFFTLKN--NPNVKAFVISATEDKAYLLINNEKGKIKIN-DELIELNNTNKVKTSKEYFGKIID 85 (507)
T ss_pred ceEEEEEccc-CCCcCCEEEECC--CCeEEEEEEEEeCCeEEEEEccCccCCCCC-CEEEECCCccEEECCccccCCEEC
Confidence 3447788877 999999999943 3358999999994 5555554 579998 899999999999999999999999
Q ss_pred ccceeecCCCCCCC-----CcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhh-hhh
Q psy5597 103 GSGKPIDKGPPILA-----EDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEF-TGD 172 (204)
Q Consensus 103 ~lG~PiDg~~~~~~-----~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l-~~~ 172 (204)
++|+|||+++++.. ...+|++.+||||++|+++++||+|||||||+|+|...|++.|++ +||| ++ +++
T Consensus 86 ~lG~piDg~g~i~~~~~~~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT--~lal~~ 163 (507)
T PRK07165 86 IDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKT--HIALNT 163 (507)
T ss_pred CCCcccCCCCCCCcccccccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCcc--HHHHHH
Confidence 99999999986654 456799999999999999999999999999999999999999987 5888 46 677
Q ss_pred hhcccccCCCCEEEEEeeeccccccchhccc
Q psy5597 173 ILRTPVSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 173 ~~~~~~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
++++. +..+.|||++||||.+|+.||++.
T Consensus 164 I~~q~--~~dv~~V~~~IGer~~ev~~~~~~ 192 (507)
T PRK07165 164 IINQK--NTNVKCIYVAIGQKRENLSRIYET 192 (507)
T ss_pred HHHhc--CCCeEEEEEEccCChHHHHHHHHH
Confidence 88775 344678999999999999999863
No 17
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=99.97 E-value=3.9e-32 Score=255.10 Aligned_cols=167 Identities=23% Similarity=0.243 Sum_probs=144.2
Q ss_pred ccceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccc
Q psy5597 27 TARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFN 102 (204)
Q Consensus 27 ~~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD 102 (204)
.+-+.++|+. .+++||+|.|. ++ ..+||++++ .+.++++. .|+..| +.|.+|+++++||+|++|||||+|
T Consensus 36 g~~v~v~g~~-~~~~ge~~~i~--~~--~~g~Vi~~~~~~~~~~~~~~~~gi~~g-~~V~~~~~~~~v~vg~~llGrv~d 109 (502)
T PRK09281 36 DGIARVYGLD-NVMAGELLEFP--GG--VYGIALNLEEDNVGAVILGDYEDIKEG-DTVKRTGRILEVPVGEALLGRVVN 109 (502)
T ss_pred CCEEEEECcc-ccccCCEEEEC--CC--cEEEEEEEcCCeEEEEEecCcccccCC-CeeeecCCceEEecCHHhcCCEEc
Confidence 3447777776 89999999994 23 799999998 45566664 579988 899999999999999999999999
Q ss_pred ccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhh-hhhhhccc
Q psy5597 103 GSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEF-TGDILRTP 177 (204)
Q Consensus 103 ~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l-~~~~~~~~ 177 (204)
++|+|||+++++...+++|++.+||||++|+++++||+||||+||+|+|...|++.|++ +||| ++ +++++++.
T Consensus 110 ~~G~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pigrGQr~~Ifg~~g~GKt--~lal~~i~~~~ 187 (502)
T PRK09281 110 PLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKT--AIAIDTIINQK 187 (502)
T ss_pred cCCCCcCCCCCCCCCceecccCCCcCccccCCccceeecCCeeeecccccccCcEEEeecCCCCCch--HHHHHHHHHhc
Confidence 99999999988877788999999999999999999999999999999998888888886 5788 56 67777765
Q ss_pred ccCCCCEEEEEeeeccccccchhccc
Q psy5597 178 VSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 178 ~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
. ..+.|||++||||+||+.||++.
T Consensus 188 ~--~dv~~V~~~IGer~~ev~e~~~~ 211 (502)
T PRK09281 188 G--KDVICIYVAIGQKASTVAQVVRK 211 (502)
T ss_pred C--CCeEEEEEEecCChHHHHHHHHH
Confidence 3 33567999999999999999863
No 18
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=99.97 E-value=4.3e-32 Score=254.77 Aligned_cols=167 Identities=23% Similarity=0.257 Sum_probs=144.6
Q ss_pred ccceeeeccccccCccCEEEEEecCCCCeEEEEeeecc--ceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccc
Q psy5597 27 TARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQA--KYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFN 102 (204)
Q Consensus 27 ~~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~~--~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD 102 (204)
.+-+.+.|++ .+++||+|.|. ++ ..+||++++. ..++++. .|+..| +.|.+|+++++||+|++|||||+|
T Consensus 35 g~ii~v~g~~-~~~~ge~~~i~--~~--~~g~Vi~~~~~~~~~~~~~~~~gi~~G-~~V~~tg~~~~v~vg~~llGRV~d 108 (501)
T TIGR00962 35 DGIARVYGLE-NVMSGELIEFE--GG--VQGIALNLEEDSVGAVIMGDYSNIREG-STVKRTGRILKVPVGDGLLGRVVN 108 (501)
T ss_pred CCEEEEECCc-CCCCCCEEEEC--CC--eEEEEEEecCCeEEEEEecCCcCCCCC-CeeEecCCccEEecChHhcCCEeC
Confidence 4458888887 89999999994 23 7899999994 4555554 579999 899999999999999999999999
Q ss_pred ccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhh-hhhhhccc
Q psy5597 103 GSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEF-TGDILRTP 177 (204)
Q Consensus 103 ~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l-~~~~~~~~ 177 (204)
++|+|||+++++....++|++..||++++|+++++||+||||+||+|+|...|++.||+ +||| ++ +++++++.
T Consensus 109 ~~G~pld~~~~~~~~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~pigrGQr~~I~g~~g~GKt--~Lal~~i~~~~ 186 (501)
T TIGR00962 109 ALGQPIDGKGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKT--AVAIDTIINQK 186 (501)
T ss_pred CCCCeeCCCCCcCCCCceeeecCCCChhhcCCcCceeccCCceeeccCCcccCCEEEeecCCCCCcc--HHHHHHHHhhc
Confidence 99999999988876777899999999999999999999999999999999999998886 5888 57 67777775
Q ss_pred ccCCCCEEEEEeeeccccccchhccc
Q psy5597 178 VSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 178 ~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
. ....|||++||||+||+.|||+.
T Consensus 187 ~--~dv~~V~~~IGer~rev~e~~~~ 210 (501)
T TIGR00962 187 D--SDVYCVYVAIGQKASTVAQVVRK 210 (501)
T ss_pred C--CCeEEEEEEccCChHHHHHHHHH
Confidence 3 33457999999999999999874
No 19
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=99.97 E-value=1e-31 Score=251.85 Aligned_cols=167 Identities=20% Similarity=0.276 Sum_probs=143.6
Q ss_pred ccceeeeccccccCccCEEEEEecCCCCeEEEEeeeccc--eEEEcC--CcccCCccEEEecCCeeEEeCCccccccccc
Q psy5597 27 TARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQAK--YFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFN 102 (204)
Q Consensus 27 ~~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~~~--~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD 102 (204)
.+-+.+.++. .+++||+|.|. ++ ..|||++|+.. .++++. .|+..| +.|.+|+++++||+|++|||||+|
T Consensus 36 g~i~~v~gl~-~~~~ge~~~i~--~~--~~g~V~~l~~~~v~~~~l~~~~gi~~G-~~V~~tg~~~~vpvg~~llGRVid 109 (502)
T PRK13343 36 DGIAFVSGLP-DAALDELLRFE--GG--SRGFAFNLEEELVGAVLLDDTADILAG-TEVRRTGRVLEVPVGDGLLGRVID 109 (502)
T ss_pred CCEEEEeCCC-CCCCCCEEEEC--CC--cEEEEEEecCCeEEEEEeeCCCCCCCC-CEeEecCCcceeecCHHhcCCEEC
Confidence 4446777654 89999999993 23 78999999944 455554 579999 899999999999999999999999
Q ss_pred ccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhh-hhhhhccc
Q psy5597 103 GSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEF-TGDILRTP 177 (204)
Q Consensus 103 ~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l-~~~~~~~~ 177 (204)
++|+|||+++++...+++|++.+||+|++|+++++||+||||+||+|+|...|++.|++ +||| ++ +++++++.
T Consensus 110 ~lG~piDg~~~i~~~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~pigrGQR~~I~g~~g~GKt--~Lal~~i~~~~ 187 (502)
T PRK13343 110 PLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKT--AIAIDAIINQK 187 (502)
T ss_pred CCCCcccCCCCCCCCceecccCCCcChhhcCCCCcccccCCceeccccccccCCEEEeeCCCCCCcc--HHHHHHHHhhc
Confidence 99999999998887788999999999999999999999999999999998888888886 5888 57 67888775
Q ss_pred ccCCCCEEEEEeeeccccccchhccc
Q psy5597 178 VSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 178 ~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
.+ ...|||++||||.+|+.||++.
T Consensus 188 ~~--dv~~V~~~IGer~rev~e~~~~ 211 (502)
T PRK13343 188 DS--DVICVYVAIGQKASAVARVIET 211 (502)
T ss_pred CC--CEEEEEEEeccChHHHHHHHHH
Confidence 32 3457999999999999999874
No 20
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=99.97 E-value=1.3e-30 Score=241.64 Aligned_cols=165 Identities=19% Similarity=0.245 Sum_probs=139.2
Q ss_pred eeccccccCccCEEEEEecCCC---CeEEEEeeeccc--eEEEcC--CcccCCccEEEec-------CCeeEEeCCcccc
Q psy5597 32 KQDFEENGSMENVCLFLNLAND---PTIERIITFQAK--YFSIYN--DGNNRGSFICEFT-------GDILRTPVSEDML 97 (204)
Q Consensus 32 v~~~~~~~~iGd~c~I~~~~~~---~~~aEVVg~~~~--~ll~~~--~gi~~Gg~~V~~t-------g~~~~Vpvg~~lL 97 (204)
+++.+..+++||+|.|...++. .+.||||+|+.. .++++. .|+.+| ++|.++ +++++||||++||
T Consensus 39 v~~~g~~~~iG~~c~i~~~~~~~~~~~~~eVvg~~~~~~~l~~~~~~~gi~~g-~~v~~~~~~~~~~~~~~~v~vg~~ll 117 (455)
T PRK07960 39 LEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGILPG-ARVYARNISGEGLQSGKQLPLGPALL 117 (455)
T ss_pred EEEeCCCCCCCCEEEEEeCCCccccceeeeEEEecCCEEEEEECCCccCCCCC-CEEEECCcccccCCCceEEECCcccc
Confidence 4445569999999999543331 488999999954 455553 679998 899998 9999999999999
Q ss_pred cccccccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhh
Q psy5597 98 GRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDI 173 (204)
Q Consensus 98 GRViD~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~ 173 (204)
|||+|++|+|||+++++...+++|++++||||++|+++++||+||||+||.|++...+++.++. .+|| +|+.++
T Consensus 118 GRvid~~G~piDg~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~I~~Gqri~I~G~sG~GKT--TLL~~I 195 (455)
T PRK07960 118 GRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKS--VLLGMM 195 (455)
T ss_pred cCEECCCccccCCCCCCCCCccccccCCCcChHHhcccccchhccceeeeecccccCCcEEEEECCCCCCcc--HHHHHH
Confidence 9999999999999988776667899999999999999999999999999999997777776664 4777 688888
Q ss_pred hcccccCCCCEEEEEeeeccccccchhcc
Q psy5597 174 LRTPVSEDMLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 174 ~~~~~s~~~~~~Vf~giGer~~e~~el~~ 202 (204)
+++... ..+|+++||++.+|+.++|+
T Consensus 196 a~~~~~---d~iv~g~Igerg~ev~e~~~ 221 (455)
T PRK07960 196 ARYTQA---DVIVVGLIGERGREVKDFIE 221 (455)
T ss_pred hCCCCC---CEEEEEEEEECCeEHHHHHH
Confidence 877533 47899999999999999875
No 21
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=99.97 E-value=1.3e-30 Score=235.48 Aligned_cols=179 Identities=23% Similarity=0.281 Sum_probs=155.5
Q ss_pred eEEEEEeeeeeccccceeeeccccccCccCEEEEEecCCCCeEEEEeee---c--cceEEEcCCcccCCccEEEecCCee
Q psy5597 14 FAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITF---Q--AKYFSIYNDGNNRGSFICEFTGDIL 88 (204)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~---~--~~~ll~~~~gi~~Gg~~V~~tg~~~ 88 (204)
+-|++++++|.|... +..+.|.+.+.+...+...+..||..+ + ++++|-.++|+.+| ..|..||++.
T Consensus 7 vqv~g~VvdV~F~~~-------~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg-~~v~dtg~pi 78 (468)
T COG0055 7 VQVIGPVVDVEFPEE-------DELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRG-LEVIDTGKPI 78 (468)
T ss_pred EEEEeeEEEEEecCc-------ccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccC-cEEecCCCce
Confidence 468999999999742 235677777777654212466777544 2 56666678999999 7999999999
Q ss_pred EEeCCcccccccccccceeecCCCCCCCC--cceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----C
Q psy5597 89 RTPVSEDMLGRVFNGSGKPIDKGPPILAE--DYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----A 162 (204)
Q Consensus 89 ~Vpvg~~lLGRViD~lG~PiDg~~~~~~~--~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~ 162 (204)
+||||+..|||++|.+|+|||..+++... ++|+|+.++|...+...-.|.|+||||+||.|.|...||+.||+ .
T Consensus 79 ~VPVG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGV 158 (468)
T COG0055 79 SVPVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 158 (468)
T ss_pred EEecchhhcccchhccCCcccccCCCCccccceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeeeccCCc
Confidence 99999999999999999999999888765 88999999999999999999999999999999999999999997 5
Q ss_pred CceehhhhhhhhcccccCCCCEEEEEeeeccccccchhcc
Q psy5597 163 KNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 163 ~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el~~ 202 (204)
|||| +++++++|.+.+|...+||+|+|||.||+.|||+
T Consensus 159 GKTV--l~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~ 196 (468)
T COG0055 159 GKTV--LIQELINNIAKEHGGYSVFAGVGERTREGNDLYH 196 (468)
T ss_pred ccee--eHHHHHHHHHHHcCCeEEEEeccccccchHHHHH
Confidence 8996 8999999998899999999999999999999997
No 22
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=99.97 E-value=5.7e-30 Score=237.60 Aligned_cols=168 Identities=21% Similarity=0.297 Sum_probs=141.1
Q ss_pred ceeeeccccccCccCEEEEEecCCC---CeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccc
Q psy5597 29 RFFKQDFEENGSMENVCLFLNLAND---PTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVF 101 (204)
Q Consensus 29 ~~~v~~~~~~~~iGd~c~I~~~~~~---~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRVi 101 (204)
|..+++-+..+++||+|.|...++. .+.|||++|+ .+.++++. .|+..| ++|++|+++++||+|++|||||+
T Consensus 36 g~~~~~~g~~~~~ge~c~i~~~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~V~~tg~~~~v~vg~~llGRV~ 114 (451)
T PRK05688 36 GLTLEAEGLRAAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVFLMPVGSVAGIAPG-ARVVPLADTGRLPMGMSMLGRVL 114 (451)
T ss_pred ecEEEEecCCCCCCCEEEEecCCCccccceEEEEEEEcCCEEEEEEccCccCCCCC-CEEEECCCccEEEecccccCCEE
Confidence 3334444447999999999643332 5899999998 45566664 579999 89999999999999999999999
Q ss_pred cccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhccc
Q psy5597 102 NGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTP 177 (204)
Q Consensus 102 D~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~ 177 (204)
|++|+|||+++++...+++|++++||||++|.++++||+||||+||.|++...+++.|+. .+|| +++.+++++.
T Consensus 115 d~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~sG~GKS--TLl~~I~g~~ 192 (451)
T PRK05688 115 DGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKS--VLLGMMTRFT 192 (451)
T ss_pred eccCceecCCCCCCccceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEEEEECCCCCCHH--HHHHHHhCCC
Confidence 999999999988776777899999999999999999999999999999997777777775 4777 6888877764
Q ss_pred ccCCCCEEEEEeeeccccccchhcc
Q psy5597 178 VSEDMLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 178 ~s~~~~~~Vf~giGer~~e~~el~~ 202 (204)
+..++||+++|++.+|+.+|++
T Consensus 193 ---~~dv~V~g~Ig~rg~ev~~~~~ 214 (451)
T PRK05688 193 ---EADIIVVGLIGERGREVKEFIE 214 (451)
T ss_pred ---CCCEEEEEEeCcCcHhHHHHHH
Confidence 3348899999999999999875
No 23
>PRK09099 type III secretion system ATPase; Provisional
Probab=99.96 E-value=7.1e-30 Score=236.66 Aligned_cols=169 Identities=20% Similarity=0.328 Sum_probs=143.8
Q ss_pred ccceeeeccccccCccCEEEEEecCCCC-eEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccc
Q psy5597 27 TARFFKQDFEENGSMENVCLFLNLANDP-TIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVF 101 (204)
Q Consensus 27 ~~~~~v~~~~~~~~iGd~c~I~~~~~~~-~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRVi 101 (204)
..-+.+.++ .+++||+|.|...++.. ..||||+|+ .+.++++. .|+..| ++|.+|+++++||+|++|||||+
T Consensus 33 g~~i~~~g~--~~~~ge~~~i~~~~g~~~~~~eVv~~~~~~~~l~~~~~t~gi~~g-~~V~~tg~~~~v~vg~~lLGrV~ 109 (441)
T PRK09099 33 GTLLRVSGL--DVTLGELCELRQRDGTLLQRAEVVGFSRDVALLSPFGELGGLSRG-TRVIGLGRPLSVPVGPALLGRVI 109 (441)
T ss_pred CCEEEEecc--CCCCCCEEEEecCCCCeeeEEEEEEEECCEEEEEEccCCcCCCCC-CEEEeCCCccEEEeccccccCEE
Confidence 344777777 59999999995433433 789999999 45566664 579999 89999999999999999999999
Q ss_pred cccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhccc
Q psy5597 102 NGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTP 177 (204)
Q Consensus 102 D~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~ 177 (204)
|++|+|||+.+++...+++|++..||||++|+++++||+||+++||.++|...+++.++. .+|| +++.+++++.
T Consensus 110 d~~G~piD~~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKT--tLl~~ia~~~ 187 (441)
T PRK09099 110 DGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKS--TLMGMFARGT 187 (441)
T ss_pred cccCCccCCCCCCccccccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEEECCCCCCHH--HHHHHHhCCC
Confidence 999999999888776677899999999999999999999999999999997777777774 4787 6888888776
Q ss_pred ccCCCCEEEEEeeeccccccchhccc
Q psy5597 178 VSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 178 ~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
..+ ..+|.++|||++|+.||++.
T Consensus 188 ~~d---~~vi~~iGer~~ev~ef~~~ 210 (441)
T PRK09099 188 QCD---VNVIALIGERGREVREFIEL 210 (441)
T ss_pred CCC---eEEEEEEccChHHHHHHHHH
Confidence 443 68999999999999999763
No 24
>PRK05922 type III secretion system ATPase; Validated
Probab=99.96 E-value=8.1e-30 Score=235.73 Aligned_cols=168 Identities=19% Similarity=0.226 Sum_probs=143.2
Q ss_pred ccceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccc
Q psy5597 27 TARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFN 102 (204)
Q Consensus 27 ~~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD 102 (204)
..-+.++++ .+++||+|.|...++..+.|||++|+ .+.++++. .|+..| ++|.+++++++|++|++|||||+|
T Consensus 28 g~~i~~~g~--~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~G-~~V~~~~~~~~v~vg~~llGrv~d 104 (434)
T PRK05922 28 GNLLEAQGL--SACLGELCQISLSKSPPILAEVIGFHNRTTLLMSLSPIHYVALG-AEVLPLRRPPSLHLSDHLLGRVLD 104 (434)
T ss_pred ccEEEEEeC--CCCCCCEEEEecCCCCeeEEEEEEEeCCeEEEEEccCCCCCCCC-CEEEeCCCCcEEEcChhhcCCEeC
Confidence 344777777 58899999997432345899999999 45666664 579999 899999999999999999999999
Q ss_pred ccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccc
Q psy5597 103 GSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPV 178 (204)
Q Consensus 103 ~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~ 178 (204)
++|+|||+.+++....++|++.+||||++|+++++||+||||+||+|+|...+++.|++ .+|| +|+.+++++.
T Consensus 105 ~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKS--TLL~~Ia~~~- 181 (434)
T PRK05922 105 GFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKS--SLLSTIAKGS- 181 (434)
T ss_pred CCCCccCCCCCCCccceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCChH--HHHHHHhccC-
Confidence 99999999887776677899999999999999999999999999999998888887774 4777 7888888775
Q ss_pred cCCCCEEEEEeeeccccccchhcc
Q psy5597 179 SEDMLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 179 s~~~~~~Vf~giGer~~e~~el~~ 202 (204)
+.+..+|+++|+|++|+.++|.
T Consensus 182 --~~d~gvi~liGerg~ev~eyl~ 203 (434)
T PRK05922 182 --KSTINVIALIGERGREVREYIE 203 (434)
T ss_pred --CCCceEEEEeCCCCchHHHHHH
Confidence 3458999999999999988874
No 25
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=99.96 E-value=2.3e-30 Score=244.80 Aligned_cols=163 Identities=17% Similarity=0.259 Sum_probs=139.1
Q ss_pred eeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccc
Q psy5597 30 FFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSG 105 (204)
Q Consensus 30 ~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG 105 (204)
+.++++. .+++||+|.|. +..+.+|||+|+ .+.+++|. .|+..| ++|..|+++++|++|++|||||+|++|
T Consensus 13 V~a~g~~-~~~~gE~v~v~---~~~l~gEVI~l~~d~a~iq~ye~t~Gl~~G-~~V~~tg~~lsv~lGpglLG~V~Dgig 87 (591)
T TIGR01042 13 VVAENMA-GAAMYELVRVG---HDELVGEIIRLEGDKATIQVYEETSGLTVG-DPVLRTGKPLSVELGPGILGNIFDGIQ 87 (591)
T ss_pred EEEecCC-CCCcCCEEEEC---CCceEEEEEEEcCCeEEEEEccCccCCCCC-CEEEeCCCccEEEcCHHHhhcccCcCC
Confidence 4455554 89999999993 235899999999 67777775 579999 899999999999999999999999999
Q ss_pred eeecCCC----C-----------CCCC-----------------------------------------------------
Q psy5597 106 KPIDKGP----P-----------ILAE----------------------------------------------------- 117 (204)
Q Consensus 106 ~PiDg~~----~-----------~~~~----------------------------------------------------- 117 (204)
+|||+.+ + ++.+
T Consensus 88 rPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i~~~g~ 167 (591)
T TIGR01042 88 RPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYIAPAGN 167 (591)
T ss_pred CchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEEccCCC
Confidence 9999753 1 2111
Q ss_pred ----------------------cceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhh
Q psy5597 118 ----------------------DYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTG 171 (204)
Q Consensus 118 ----------------------~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~ 171 (204)
++||+.. |||+++|.++++||.||+|+||+|+|...|++.|++ +||| ++++
T Consensus 168 ytv~~~i~~~~~~g~~~~~~m~~~wPvr~-p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg~G~GKT--~l~~ 244 (591)
T TIGR01042 168 YTVDDTVLEVEFQGVKKKFSMLQTWPVRS-PRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT--VISQ 244 (591)
T ss_pred ceeeeEEEEEeeCCceeeeccceeeeccc-CCChhhccCCCCccccchhhhhhccchhcCCeEEEEcCCCcCHH--HHHH
Confidence 2589997 899999999999999999999999999999999997 6999 4788
Q ss_pred hhhcccccCCCCEEEEEeeeccccccchhccc
Q psy5597 172 DILRTPVSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 172 ~~~~~~~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
+++++.. .+++||++||||++|+.|+++.
T Consensus 245 ~lak~s~---aDviVyvg~GERG~Em~evle~ 273 (591)
T TIGR01042 245 SLSKYSN---SDAIVYVGCGERGNEMAEVLMD 273 (591)
T ss_pred HHHhccC---cCEEEEEEEeechHHHHHHHHH
Confidence 8888764 4499999999999999999863
No 26
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=99.96 E-value=9e-30 Score=235.50 Aligned_cols=165 Identities=17% Similarity=0.190 Sum_probs=138.6
Q ss_pred eeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccccccee
Q psy5597 32 KQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKP 107 (204)
Q Consensus 32 v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~P 107 (204)
+++-+..+++||+|.|...++..+.||||+|+ .+.++++. .|+..| ++|.+|+++++||+|++|||||+|++|+|
T Consensus 29 ~~~~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~v~~~~~~~~v~vg~~llGrv~d~~G~p 107 (434)
T PRK07196 29 LESVGCRLAIGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGVLGG-ARVFPSEQDGELLIGDSWLGRVINGLGEP 107 (434)
T ss_pred EEEecCCCCcCCEEEEEeCCCceEEEEEEEecCCEEEEEECCCccCCCCC-CEEEECCCccEEEcCccccCCeeCcCCCC
Confidence 33333479999999995434435899999999 45666654 579999 89999999999999999999999999999
Q ss_pred ecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCCC
Q psy5597 108 IDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDML 183 (204)
Q Consensus 108 iDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~ 183 (204)
||+++++.....++++++||||++|.++++||+||+++||.+++...+++.|+. .+|| +++.+++++.. ..
T Consensus 108 ld~~~~~~~~~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKS--TLl~~I~g~~~---~d 182 (434)
T PRK07196 108 LDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKS--VLLGMITRYTQ---AD 182 (434)
T ss_pred cCCCCCCCCCceeeccCCCCChHHhcccccccccceeeccceEeEecceEEEEECCCCCCcc--HHHHHHhcccC---CC
Confidence 999988766667899999999999999999999999999999997777777774 4787 68888777653 23
Q ss_pred EEEEEeeeccccccchhcc
Q psy5597 184 GRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 184 ~~Vf~giGer~~e~~el~~ 202 (204)
..+++++|++.+|+.||+.
T Consensus 183 v~vig~IGerg~ev~ef~~ 201 (434)
T PRK07196 183 VVVVGLIGERGREVKEFIE 201 (434)
T ss_pred eEEEEEEeeecHHHHHHHH
Confidence 7789999999999999874
No 27
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=99.96 E-value=4.6e-30 Score=243.16 Aligned_cols=163 Identities=18% Similarity=0.249 Sum_probs=138.3
Q ss_pred eeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccc
Q psy5597 30 FFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSG 105 (204)
Q Consensus 30 ~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG 105 (204)
+.++++ ..+++||+|.|. +..+.+||++++ .+.+++|. .|+.+| ++|.+||++++|++|++|||||+|++|
T Consensus 12 v~a~g~-~~~~~gE~v~v~---~~~l~gEVi~~~~d~a~iqvye~t~Gl~~G-~~V~~tg~plsV~lGpglLGrV~Dgig 86 (578)
T TIGR01043 12 VVADGM-KGAQMYEVVKVG---EEGLIGEIIRIEGDKAFIQVYEETSGIKPG-EPVVGTGAPLSVELGPGLLGSIYDGVQ 86 (578)
T ss_pred EEEecC-CCCCcCCEEEEC---CCcEEEEEEEEcCCeEEEEECCCCCCCCCC-CEEEECCCccEEEcCHHHhcceeccCC
Confidence 444454 359999999994 245899999998 67777775 689999 899999999999999999999999999
Q ss_pred eeecCCCC--------------CCCC------------------------------------------------------
Q psy5597 106 KPIDKGPP--------------ILAE------------------------------------------------------ 117 (204)
Q Consensus 106 ~PiDg~~~--------------~~~~------------------------------------------------------ 117 (204)
+|||+.++ +..+
T Consensus 87 rPLd~~~~~~g~~i~rg~~~~~l~~~~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i~~~g~~~ 166 (578)
T TIGR01043 87 RPLDVLKEKTGDFIARGVDAPGLDRDKKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEIAEEGDYT 166 (578)
T ss_pred ccccCcccccccccccCccCCCcCcccccccccccccCccccCCceEEEEecccceeeeeecCCCCcceEEEeccCCCce
Confidence 99997621 1111
Q ss_pred -------------------cceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhh
Q psy5597 118 -------------------DYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDIL 174 (204)
Q Consensus 118 -------------------~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~ 174 (204)
++||+.. |+|+++|.++++||.||+|+||+|+|...|++.|++ +||| +++++++
T Consensus 167 ~~~~v~~~~~~g~~~~~~~~~wPvr~-p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GKT--~l~~~la 243 (578)
T TIGR01043 167 VEDTIAVVDTDGDEEIKMYQKWPVRI-PRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKT--VTQHQLA 243 (578)
T ss_pred eeeeEEEEecCCceeeeeeeeccccc-CCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCHH--HHHHHHH
Confidence 1578877 889999999999999999999999999999999997 6999 4888988
Q ss_pred cccccCCCCEEEEEeeeccccccchhccc
Q psy5597 175 RTPVSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 175 ~~~~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
++. +.+++||++||||++|+.|+++.
T Consensus 244 k~~---~adivVyvg~GERG~E~~e~le~ 269 (578)
T TIGR01043 244 KWS---DADIVVYIGCGERGNEMTDVLEE 269 (578)
T ss_pred hcC---CCCEEEEEEeccChHHHHHHHHH
Confidence 886 55699999999999999998763
No 28
>PTZ00185 ATPase alpha subunit; Provisional
Probab=99.96 E-value=4e-29 Score=234.27 Aligned_cols=167 Identities=16% Similarity=0.199 Sum_probs=139.7
Q ss_pred eeccccccCccCEEEEEecCCCCeEEEEeeeccc---eEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccce
Q psy5597 32 KQDFEENGSMENVCLFLNLANDPTIERIITFQAK---YFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGK 106 (204)
Q Consensus 32 v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~~~---~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~ 106 (204)
+.|+ .++..||++++...+++...+.|...+.+ .++++. .|+..| ++|.+|+++++||||++|||||+|++|+
T Consensus 56 v~Gl-~~~~~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~~G-~~V~~tg~~~~VpVG~~lLGRVvD~lG~ 133 (574)
T PTZ00185 56 APGN-PGVAYNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSG-QKVMATGKLLYIPVGAGVLGKVVNPLGH 133 (574)
T ss_pred cCCC-cccccCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCCCC-CEEEECCCccEEECCcccccCEECCCCc
Confidence 4677 47889999999754444568999888743 455553 579989 8999999999999999999999999999
Q ss_pred eecCC------CCCCCC-cceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhh-hhhhh
Q psy5597 107 PIDKG------PPILAE-DYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEF-TGDIL 174 (204)
Q Consensus 107 PiDg~------~~~~~~-~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l-~~~~~ 174 (204)
|||++ +++..+ .++|++.+||+|++|+++++||+||||+||+|+|...|++.||+ +||| ++ +.+++
T Consensus 134 PIDg~~~~~~~g~i~~~~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR~lIfGd~GtGKT--tLAld~Ii 211 (574)
T PTZ00185 134 EVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKT--SIAVSTII 211 (574)
T ss_pred ccCCCCccccCCCCCcccccccccCCCcChhhcCCCCCcCcCCceeeeccccccCCCEEEeecCCCCChH--HHHHHHHH
Confidence 99987 344444 46799999999999999999999999999999998888888886 5788 57 58888
Q ss_pred ccc------ccCCCCEEEEEeeeccccccchhcc
Q psy5597 175 RTP------VSEDMLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 175 ~~~------~s~~~~~~Vf~giGer~~e~~el~~ 202 (204)
+|. ...+.++|||++||||.+|+.|+++
T Consensus 212 nQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~ 245 (574)
T PTZ00185 212 NQVRINQQILSKNAVISIYVSIGQRCSNVARIHR 245 (574)
T ss_pred hhhhhccccccCCCCEEEEEEeccchHHHHHHHH
Confidence 885 1246789999999999999999875
No 29
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=99.96 E-value=1.4e-29 Score=240.14 Aligned_cols=163 Identities=20% Similarity=0.280 Sum_probs=139.3
Q ss_pred eeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccc
Q psy5597 30 FFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSG 105 (204)
Q Consensus 30 ~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG 105 (204)
+.++++ ..+++||+|.|. +..+.+||++++ .+.+++|. +|+.+| ++|.+||++++|++|++|||||+|++|
T Consensus 15 v~~~~~-~~~~~~E~v~v~---~~~l~gEVi~~~~d~a~iqv~e~T~Gl~~G-~~V~~tg~plsv~lGpglLGrv~Dg~g 89 (586)
T PRK04192 15 VVAEGM-GGARMYEVVRVG---EEGLIGEIIRIEGDKATIQVYEETSGIKPG-EPVEFTGEPLSVELGPGLLGSIFDGIQ 89 (586)
T ss_pred EEEEeC-CCCCccCEEEEC---CCcEEEEEEEEeCCceEEEEecCCcCCCCC-CEEEeCCCccEEEcCHHhcCCeecCCC
Confidence 444444 358999999993 346899999998 67778875 689999 899999999999999999999999999
Q ss_pred eeecCCCC--------------CCC-------------------------------------------------------
Q psy5597 106 KPIDKGPP--------------ILA------------------------------------------------------- 116 (204)
Q Consensus 106 ~PiDg~~~--------------~~~------------------------------------------------------- 116 (204)
+|||+.+. ++.
T Consensus 90 rPLd~~~~~~~~~i~rG~~~~~l~~~~~w~f~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i~~~G~yt 169 (586)
T PRK04192 90 RPLDELAEKSGDFLERGVYVPALDREKKWEFTPTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEIVSEGDYT 169 (586)
T ss_pred CcccccchhcccccccCCCCCCCCcccccceecccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEEccCCCce
Confidence 99997641 111
Q ss_pred --------------------CcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhh
Q psy5597 117 --------------------EDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGD 172 (204)
Q Consensus 117 --------------------~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~ 172 (204)
.++||++.++|+ .+|.++++||.||+|+||+|+|...|||.|++ +||| +++++
T Consensus 170 v~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~-~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G~GKT--vl~~~ 246 (586)
T PRK04192 170 VDDTIAVLEDEDGEGVELTMMQKWPVRRPRPY-KEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKT--VTQHQ 246 (586)
T ss_pred eeeEEEEEEccCCceeeeccccccccccCCcc-cccCCCCCccccCchhhhcccccccCCeEEEecCCCCCHH--HHHHH
Confidence 134799998777 99999999999999999999999999999997 6999 58899
Q ss_pred hhcccccCCCCEEEEEeeeccccccchhccc
Q psy5597 173 ILRTPVSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 173 ~~~~~~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
+++++ +.+++||+|||||++|+.|+++-
T Consensus 247 iak~a---~adivVyvg~GERg~E~~e~l~e 274 (586)
T PRK04192 247 LAKWA---DADIVIYVGCGERGNEMTEVLEE 274 (586)
T ss_pred HHhcC---CCCEEEEEEcCcChHHHHHHHHH
Confidence 99987 45699999999999999999863
No 30
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=99.96 E-value=4.5e-29 Score=230.13 Aligned_cols=170 Identities=18% Similarity=0.218 Sum_probs=141.9
Q ss_pred ccceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccc
Q psy5597 27 TARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFN 102 (204)
Q Consensus 27 ~~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD 102 (204)
..-+.++++...+++||+|.|...++....|||++|+ .+.++++. .|+.+| +.|++|+++++||+|++|||||+|
T Consensus 8 g~~~~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~~~gi~~G-~~V~~tg~~~~i~vg~~lLGRViD 86 (418)
T TIGR03498 8 GLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLG-CAVFAREGPLAVRPHPSWLGRVIN 86 (418)
T ss_pred CcEEEEEcCCCccCCCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCC-CEEEECCCccEEEeChhhcCCEEC
Confidence 3447778775445999999996544435899999999 45555654 679999 899999999999999999999999
Q ss_pred ccceeecCCCCCCCC-cceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhccc
Q psy5597 103 GSGKPIDKGPPILAE-DYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTP 177 (204)
Q Consensus 103 ~lG~PiDg~~~~~~~-~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~ 177 (204)
++|+|||+++++... .++|++..||||++|.++++||+||+++||.++|...+++.++. .+|| +|+.+++++.
T Consensus 87 ~lG~plD~~~~~~~~~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKT--tLl~~I~~~~ 164 (418)
T TIGR03498 87 ALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKS--TLLSMLARNT 164 (418)
T ss_pred CCCCccCCCCCCCCCcceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCCChH--HHHHHHhCCC
Confidence 999999998876544 46899999999999999999999999999999997777777764 4777 6888887765
Q ss_pred ccCCCCEEEEEeeeccccccchhcc
Q psy5597 178 VSEDMLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 178 ~s~~~~~~Vf~giGer~~e~~el~~ 202 (204)
.. ...++.++|+|.+|+.||++
T Consensus 165 ~~---~~gvi~~iGer~~ev~~~~~ 186 (418)
T TIGR03498 165 DA---DVVVIALVGERGREVREFLE 186 (418)
T ss_pred CC---CEEEEEEEeeechHHHHHHH
Confidence 32 36789999999999999986
No 31
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=99.96 E-value=4.2e-29 Score=230.11 Aligned_cols=160 Identities=24% Similarity=0.396 Sum_probs=138.4
Q ss_pred ccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccceeecCCCC
Q psy5597 38 NGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPP 113 (204)
Q Consensus 38 ~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~PiDg~~~ 113 (204)
.+++||+|.|...++..+.+||++|+ .+.++++. .|+.+| ++|.+|+++++||+|++|||||+|++|+|||+.++
T Consensus 17 ~~~ige~~~i~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G-~~V~~tg~~~~vpvg~~lLGRVid~~G~plD~~~~ 95 (413)
T TIGR03497 17 KAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGPG-SLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGP 95 (413)
T ss_pred CCCcCCEEEEEeCCCCeEEEEEEEEcCCeEEEEEccCccCCCCC-CEEEEcCCeeEEEcchhhcCCEEcCCCCcccCCCC
Confidence 79999999996433456899999998 45666664 679999 89999999999999999999999999999999888
Q ss_pred CCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCCCEEEEEe
Q psy5597 114 ILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDMLGRVFNG 189 (204)
Q Consensus 114 ~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~~~Vf~g 189 (204)
+...++||++++||||++|.++++++.||+|+||.++|...+++.++. .+|| +|+.+++++... ...++++
T Consensus 96 ~~~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GKT--tLl~~i~~~~~~---~~gvi~~ 170 (413)
T TIGR03497 96 IIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKS--TLLGMIARNAKA---DINVIAL 170 (413)
T ss_pred CCCCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCHH--HHHHHHhCCCCC---CeEEEEE
Confidence 776678999999999999999999999999999999998777777775 4777 688888877533 3678999
Q ss_pred eeccccccchhccc
Q psy5597 190 SGKPIDKAVRLLRY 203 (204)
Q Consensus 190 iGer~~e~~el~~~ 203 (204)
+|||.+|+.||++.
T Consensus 171 ~Ger~~ev~e~~~~ 184 (413)
T TIGR03497 171 IGERGREVRDFIEK 184 (413)
T ss_pred EccchHHHHHHHHH
Confidence 99999999999763
No 32
>KOG1350|consensus
Probab=99.96 E-value=6.5e-30 Score=227.78 Aligned_cols=181 Identities=23% Similarity=0.275 Sum_probs=156.3
Q ss_pred ceEEEEEeeeeeccccc-eeeeccccccCccCEEE-EEecCCCCeEEEEeeeccceEEEcCCcccCCccEEEecCCeeEE
Q psy5597 13 NFAIVFAAMGVNMETAR-FFKQDFEENGSMENVCL-FLNLANDPTIERIITFQAKYFSIYNDGNNRGSFICEFTGDILRT 90 (204)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~iGd~c~-I~~~~~~~~~aEVVg~~~~~ll~~~~gi~~Gg~~V~~tg~~~~V 90 (204)
-.|||+|++||+||++- -++++|+...+-.-++. +..+-|++... +..|--++|+.+| .+|..||.|.+|
T Consensus 55 i~avIGavvDv~F~~~~P~ilNaLev~~~~~~lvlEV~qhlG~n~VR-------~iAMdgTEGLvRG-~~VlDtG~Pi~i 126 (521)
T KOG1350|consen 55 IVAVIGAVVDVQFEEGLPPILNALEVKGRDTRLVLEVAQHLGENTVR-------TIAMDGTEGLVRG-QKVLDTGYPISI 126 (521)
T ss_pred EEEEEeeeEEEecCCCCcchhhceeecCCCceeeeHHHHHhCcCeEE-------EEEecCchhhhcC-cccccCCCceee
Confidence 37999999999999988 67788766655554332 33333333322 3344456899999 689999999999
Q ss_pred eCCcccccccccccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCcee
Q psy5597 91 PVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTV 166 (204)
Q Consensus 91 pvg~~lLGRViD~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv 166 (204)
|||++.|||++|..|+|+|.++|+....+.||++.+|...+-..-.|.|.||||++|.|.|...+|++||+ .+|||
T Consensus 127 pVG~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTV 206 (521)
T KOG1350|consen 127 PVGPETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 206 (521)
T ss_pred ecCHHHHhhHHHhcCCcccccCCcccccccccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 58995
Q ss_pred hhhhhhhhcccccCCCCEEEEEeeeccccccchhccc
Q psy5597 167 CEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 167 ~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
|++++++|.++.|..++||+|+|||.||+++|||-
T Consensus 207 --lImELINNiAKaHGGySVF~GvGERTREGNDLY~E 241 (521)
T KOG1350|consen 207 --LIMELINNIAKAHGGYSVFAGVGERTREGNDLYHE 241 (521)
T ss_pred --eHHHHHHHHHHhcCCeEEeeccccccccccHHHHH
Confidence 89999999999999999999999999999999974
No 33
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=99.96 E-value=6.7e-29 Score=228.62 Aligned_cols=168 Identities=21% Similarity=0.292 Sum_probs=144.2
Q ss_pred cceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccc
Q psy5597 28 ARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNG 103 (204)
Q Consensus 28 ~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~ 103 (204)
.-+.++++ .+++||+|.|...++..+.+||++|+ .+.++++. .|+.+| +.|++|+++++||+|++|||||+|+
T Consensus 9 ~~v~v~g~--~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~t~gl~~G-~~V~~tg~~~~v~vg~~llGrVid~ 85 (411)
T TIGR03496 9 LVLEAVGL--RAPVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLRPG-ARVFPLEGPLRLPVGDSLLGRVIDG 85 (411)
T ss_pred cEEEEEeC--CCCcCCEEEEEcCCCCeEEEEEEEecCCEEEEEEccCccCCCCC-CEEEECCCccEEEcchhhcCCEECC
Confidence 34667776 89999999996434546899999998 45666664 579999 8999999999999999999999999
Q ss_pred cceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhccccc
Q psy5597 104 SGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVS 179 (204)
Q Consensus 104 lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s 179 (204)
+|+|||+.+++...++||++.+||||++|.++++++.||+++||.++|...+++.++. .+|| +|+.+++++...
T Consensus 86 ~G~pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKT--tLl~~I~~~~~~ 163 (411)
T TIGR03496 86 LGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKS--TLLGMMARYTEA 163 (411)
T ss_pred CCCCcCCCCCCCcccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCHH--HHHHHHhcCCCC
Confidence 9999999888776778999999999999999999999999999999998888877775 5787 688888776533
Q ss_pred CCCCEEEEEeeeccccccchhccc
Q psy5597 180 EDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 180 ~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
...+|+++|+|.+|+.||++.
T Consensus 164 ---~~~vi~~iGer~~ev~e~~~~ 184 (411)
T TIGR03496 164 ---DVVVVGLIGERGREVKEFIED 184 (411)
T ss_pred ---CEEEEEEEecChHHHHHHHHH
Confidence 377899999999999999864
No 34
>PRK06820 type III secretion system ATPase; Validated
Probab=99.96 E-value=4.9e-29 Score=230.96 Aligned_cols=157 Identities=23% Similarity=0.360 Sum_probs=136.1
Q ss_pred ccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccceeecCC
Q psy5597 36 EENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKG 111 (204)
Q Consensus 36 ~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~PiDg~ 111 (204)
...+++||+|.|.. + ...|||++|+ .+.++++. .|+..| ++|.+|+++++|++|++|||||+|++|+|||++
T Consensus 45 ~~~~~~ge~~~i~~-~--~~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~v~~tg~~~~v~vg~~llGrv~d~~G~pld~~ 120 (440)
T PRK06820 45 LPGVAQGELCRIEP-Q--GMLAEVVSIEQEMALLSPFASSDGLRCG-QWVTPLGHMHQVQVGADLAGRILDGLGAPIDGG 120 (440)
T ss_pred ECCCCcCCEEEEec-C--CeEEEEEEEeCCeEEEEEccCccCCCCC-CEEEECCCCcEEEechhhcCCEECccCCccCCC
Confidence 46899999999954 2 2899999998 45666664 579999 899999999999999999999999999999998
Q ss_pred CCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCCCEEEE
Q psy5597 112 PPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDMLGRVF 187 (204)
Q Consensus 112 ~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~~~Vf 187 (204)
+++ ..+++|+++.||||++|+++++||+||||+||.|+|...|++.+++ .+|| +|+.+++++. +.+.+||
T Consensus 121 ~~~-~~~~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~~i~~Gqri~I~G~sG~GKS--tLl~~I~~~~---~~dv~V~ 194 (440)
T PRK06820 121 PPL-TGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKS--TLLGMLCADS---AADVMVL 194 (440)
T ss_pred CCC-CcccccccCCCCChhhcCCchhhccCCCceecceEEecCCCEEEEECCCCCChH--HHHHHHhccC---CCCEEEE
Confidence 765 4566799999999999999999999999999999998888887775 4787 6888877765 3458899
Q ss_pred Eeeeccccccchhcc
Q psy5597 188 NGSGKPIDKAVRLLR 202 (204)
Q Consensus 188 ~giGer~~e~~el~~ 202 (204)
+++|||++|+.+|++
T Consensus 195 ~~iGergrEv~ef~e 209 (440)
T PRK06820 195 ALIGERGREVREFLE 209 (440)
T ss_pred EEEccChHHHHHHHH
Confidence 999999999999875
No 35
>PRK06315 type III secretion system ATPase; Provisional
Probab=99.96 E-value=1.5e-28 Score=227.72 Aligned_cols=162 Identities=23% Similarity=0.324 Sum_probs=134.9
Q ss_pred ccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccceeecC-
Q psy5597 36 EENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDK- 110 (204)
Q Consensus 36 ~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~PiDg- 110 (204)
...+++||+|.|...++..+.|||++|+ .+.++++. .|+..| ++|++|+++++||+|++|||||+|++|+|||+
T Consensus 39 ~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~V~~~g~~~~v~vg~~llGrv~d~~G~pld~~ 117 (442)
T PRK06315 39 VPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS-SEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTE 117 (442)
T ss_pred ECCcccCCEEEEecCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCC-CEEEeCCCccEEEecccccCCEEeccCcccccc
Confidence 4468999999996532225899999998 45666664 679999 89999999999999999999999999999998
Q ss_pred -CCCCC-CCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCCCE
Q psy5597 111 -GPPIL-AEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDMLG 184 (204)
Q Consensus 111 -~~~~~-~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~~ 184 (204)
++++. ..+++|++.+||||++|.++++||+||||+||.+++...+++.|+. .+|| +++.+++++... ...
T Consensus 118 ~~~~~~~~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~G~sG~GKS--tLl~~I~~~~~~--~~~ 193 (442)
T PRK06315 118 TKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKS--SLLGMIARNAEE--ADV 193 (442)
T ss_pred cCCCcccccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEECCCCCCcc--hHHHHhhccccc--CCc
Confidence 66654 4456899999999999999999999999999999997777777774 4777 688888876521 235
Q ss_pred EEEEeeeccccccchhcc
Q psy5597 185 RVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 185 ~Vf~giGer~~e~~el~~ 202 (204)
.++.++|||++|+.+|++
T Consensus 194 ~vi~liGerg~ev~~~~~ 211 (442)
T PRK06315 194 NVIALIGERGREVREFIE 211 (442)
T ss_pred eEEEEECCCchHHHHHHH
Confidence 789999999999999875
No 36
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=99.96 E-value=1.2e-28 Score=228.01 Aligned_cols=168 Identities=20% Similarity=0.253 Sum_probs=143.2
Q ss_pred cceeeeccccccCccCEEEEEecC-CCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccc
Q psy5597 28 ARFFKQDFEENGSMENVCLFLNLA-NDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFN 102 (204)
Q Consensus 28 ~~~~v~~~~~~~~iGd~c~I~~~~-~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD 102 (204)
.-+.++++ .+++||+|.|...+ +..+.|||++|+ .+.++++. .|+..| ++|++|+++++||+|++|||||+|
T Consensus 28 ~~v~~~g~--~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~t~gl~~G-~~V~~tg~~~~v~vg~~llGRViD 104 (434)
T PRK08472 28 TIIEADGL--NPSVGDIVKIESSDNGKECLGMVVVIEKEQFGISPFSFIEGFKIG-DKVFISKEGLNIPVGRNLLGRVVD 104 (434)
T ss_pred cEEEEEec--CCCCCCEEEEecCCCCCceEEEEEEEeCCeEEEEEccCCCCCCCC-CEEEeCCCceEEEcChhhcCCEEC
Confidence 34677776 48999999996432 135899999999 45666664 679999 899999999999999999999999
Q ss_pred ccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccc
Q psy5597 103 GSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPV 178 (204)
Q Consensus 103 ~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~ 178 (204)
++|+|||+++++...+++|++++||||++|.+++++|.||+++||.|++...+++.++. .+|| +++.+++++..
T Consensus 105 ~~G~plD~~g~~~~~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKS--tLl~~i~~~~~ 182 (434)
T PRK08472 105 PLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKS--TLMGMIVKGCL 182 (434)
T ss_pred CCCCcccCCCCCCcccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEEECCCCCCHH--HHHHHHhhccC
Confidence 99999999988766667899999999999999999999999999999997777777774 4777 78888888764
Q ss_pred cCCCCEEEEEeeeccccccchhccc
Q psy5597 179 SEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 179 s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
. ..++|+++|+|++|+.+|+++
T Consensus 183 ~---~v~vi~~iGergrev~e~~~~ 204 (434)
T PRK08472 183 A---PIKVVALIGERGREIPEFIEK 204 (434)
T ss_pred C---CEEEEEeeCccchhHHHHHHH
Confidence 3 489999999999999999864
No 37
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=99.95 E-value=8.7e-28 Score=221.94 Aligned_cols=167 Identities=22% Similarity=0.277 Sum_probs=140.2
Q ss_pred cceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccc
Q psy5597 28 ARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNG 103 (204)
Q Consensus 28 ~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~ 103 (204)
..+.++ ...+++||+|.|.+..+..+.+||++|+ .+.++++. .|+..| ++|.+||++++||+|++|||||+|+
T Consensus 15 ~~v~v~--~~~~~~ge~~~i~~~~~~~~~~eVi~~~~~~~~l~~~~~~~gl~~G-~~V~~tg~~~~v~vg~~lLGrViD~ 91 (422)
T TIGR02546 15 TLLKAV--LPGARVGELCLIRRRDPSQLLAEVVGFTGDEALLSPLGELHGISPG-SEVIPTGRPLSIRVGEALLGRVLDG 91 (422)
T ss_pred cEEEEE--ECCCCCCCEEEEeeCCCCeEEEEEEEEcCCcEEEEEccCccCCCCC-CEEEECCCCceEEeChhhccCEeCC
Confidence 335554 3479999999997433446899999998 55666664 679999 8999999999999999999999999
Q ss_pred cceeecCCCCCCCCc--ceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhccc
Q psy5597 104 SGKPIDKGPPILAED--YLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTP 177 (204)
Q Consensus 104 lG~PiDg~~~~~~~~--~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~ 177 (204)
+|+|||+.+++.... +||++++||||++|.++++||+||+++||.++|...+++.++. .+|| +++.+++++.
T Consensus 92 ~G~plD~~~~~~~~~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKS--tLl~~I~~~~ 169 (422)
T TIGR02546 92 FGRPLDGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKS--TLLGMIARGA 169 (422)
T ss_pred CCCcccCCCCCCCCCceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECCCCCChH--HHHHHHhCCC
Confidence 999999998776553 6899999999999999999999999999999987777766664 4777 6888888775
Q ss_pred ccCCCCEEEEEeeeccccccchhcc
Q psy5597 178 VSEDMLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 178 ~s~~~~~~Vf~giGer~~e~~el~~ 202 (204)
. ....+|.++|++.+|+.||++
T Consensus 170 ~---~~~~vi~~iG~~~~ev~~~~~ 191 (422)
T TIGR02546 170 S---ADVNVIALIGERGREVREFIE 191 (422)
T ss_pred C---CCEEEEEEEccCCcCHHHHHH
Confidence 3 348999999999999998863
No 38
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=99.95 E-value=1.5e-27 Score=220.69 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=136.8
Q ss_pred eeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccc
Q psy5597 30 FFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSG 105 (204)
Q Consensus 30 ~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG 105 (204)
+.+. ...+++||+|.|.. ++ ..|||++|+ .+.++++. .|+..| ++|.+|+++++|++|++|||||+|++|
T Consensus 33 ~~~~--~~~~~~ge~~~i~~-~~--~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~V~~tg~~~~v~vg~~llGrVid~~G 106 (433)
T PRK07594 33 LNAW--LPGVFMGELCCIKP-GE--ELAEVVGINGSKALLSPFTSTIGLHCG-QQVMALRRRHQVPVGEALLGRVIDGFG 106 (433)
T ss_pred EEEE--ECCcCCCCEEEEec-CC--eEEEEEEEcCCeEEEEEccCCcCCCCC-CEEEeCCCccEEEeChhhccCEEcccC
Confidence 4444 56999999999954 22 799999998 55666664 679999 899999999999999999999999999
Q ss_pred eeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCC
Q psy5597 106 KPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSED 181 (204)
Q Consensus 106 ~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~ 181 (204)
+|||++++. ...++|++..||||++|++++++|+||+|+||.|+|...+++.||. .+|| +++.+++++...
T Consensus 107 ~pld~~~~~-~~~~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GKS--TLL~~I~~~~~~-- 181 (433)
T PRK07594 107 RPLDGRELP-DVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS--TLLAMLCNAPDA-- 181 (433)
T ss_pred CCcCCCCCC-cccccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCcc--HHHHHhcCCCCC--
Confidence 999998763 4456799999999999999999999999999999998777777775 4777 688887776533
Q ss_pred CCEEEEEeeeccccccchhcc
Q psy5597 182 MLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 182 ~~~~Vf~giGer~~e~~el~~ 202 (204)
...+|.++|||.+|+.||++
T Consensus 182 -d~~vi~~iGeRgrEv~efl~ 201 (433)
T PRK07594 182 -DSNVLVLIGERGREVREFID 201 (433)
T ss_pred -CEEEEEEECCCchHHHHHHH
Confidence 36899999999999999875
No 39
>PRK08149 ATP synthase SpaL; Validated
Probab=99.95 E-value=3.7e-27 Score=217.79 Aligned_cols=162 Identities=20% Similarity=0.234 Sum_probs=135.5
Q ss_pred cccccCccCEEEEEecC-CCCeE--EEEeeecc--ceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccccccee
Q psy5597 35 FEENGSMENVCLFLNLA-NDPTI--ERIITFQA--KYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKP 107 (204)
Q Consensus 35 ~~~~~~iGd~c~I~~~~-~~~~~--aEVVg~~~--~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~P 107 (204)
-.+.+++||+|.|.... +..+. ||||+|+. +.++++. +|+..| ++|.+++++++||+|++|||||+|++|+|
T Consensus 21 ~~~~~~~ge~~~i~~~~~~~~~~~~~evv~~~~~~~~l~~~~~~~gi~~g-~~v~~~~~~~~v~vg~~llGrv~d~~G~p 99 (428)
T PRK08149 21 ELPDVAIGEICEIRAGWHSNEVIARAQVVGFQRERTILSLIGNAQGLSRQ-VVLKPTGKPLSVWVGEALLGAVLDPTGKI 99 (428)
T ss_pred EECCCCcCCEEEEeecCCCCceeeEEEEEEeeCcEEEEEECCCccCCCCC-CEEEEcCCcCEEEeChhhcCCeeCCCCCC
Confidence 35699999999995421 22355 99999994 5555664 679999 89999999999999999999999999999
Q ss_pred ecCCC--CCC--CCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhccccc
Q psy5597 108 IDKGP--PIL--AEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVS 179 (204)
Q Consensus 108 iDg~~--~~~--~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s 179 (204)
||+.+ +.. ..+++|++++||||++|+++++||.||+++||.++|...|++.|++ .+|| +|+.+++++..
T Consensus 100 iD~~~~~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~G~sG~GKT--TLl~~i~~~~~- 176 (428)
T PRK08149 100 VERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKT--SLMNMLIEHSE- 176 (428)
T ss_pred cCCCCCCcccccccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEEECCCCCChh--HHHHHHhcCCC-
Confidence 99886 332 2466899999999999999999999999999999998777777775 4787 78888887753
Q ss_pred CCCCEEEEEeeeccccccchhcc
Q psy5597 180 EDMLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 180 ~~~~~~Vf~giGer~~e~~el~~ 202 (204)
...+||+++|+|++|+.||++
T Consensus 177 --~dv~v~g~Ig~rg~ev~e~~~ 197 (428)
T PRK08149 177 --ADVFVIGLIGERGREVTEFVE 197 (428)
T ss_pred --CCeEEEEEEeeCCccHHHHHH
Confidence 347889999999999999875
No 40
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=99.95 E-value=2.6e-27 Score=219.68 Aligned_cols=160 Identities=24% Similarity=0.359 Sum_probs=135.6
Q ss_pred cccCccCEEEEEecC-CCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccceeecCC
Q psy5597 37 ENGSMENVCLFLNLA-NDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKG 111 (204)
Q Consensus 37 ~~~~iGd~c~I~~~~-~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~PiDg~ 111 (204)
..+++||+|.|.... +..+.|||++|+ .+.++++. .|+.+| ++|++||++++||+|++|||||+|++|+|||+.
T Consensus 40 ~~~~~ge~~~i~~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G-~~V~~tg~~~~v~vg~~llGRVid~~G~plD~~ 118 (440)
T TIGR01026 40 PQASVGDLCLIERRGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPG-SKVLATGEGLSIKVGDGLLGRVLDGLGKPIDGK 118 (440)
T ss_pred CCCCcCCEEEEeecCCCCcEEEEEEEecCCEEEEEEccCCcCCCCC-CEEEeCCCccEEEcChhhhhceecCCCcccCCC
Confidence 479999999996421 224899999998 55666664 679999 899999999999999999999999999999998
Q ss_pred C-CCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCCCEEE
Q psy5597 112 P-PILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDMLGRV 186 (204)
Q Consensus 112 ~-~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~~~V 186 (204)
+ ++.....+|++.+||||++|.+++++|+||+++||.++|...+++.++. .+|| +|+.+++++. +....+
T Consensus 119 ~~~~~~~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKS--tLl~~I~~~~---~~~~~v 193 (440)
T TIGR01026 119 GKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKS--TLLGMIARNT---EADVNV 193 (440)
T ss_pred CCCCCCccccccccCCCChHHccCccccccceeeeeeeccccCCCcEEEEECCCCCCHH--HHHHHHhCCC---CCCEEE
Confidence 7 5555556799999999999999999999999999999997777777764 4777 6888888775 334789
Q ss_pred EEeeeccccccchhcc
Q psy5597 187 FNGSGKPIDKAVRLLR 202 (204)
Q Consensus 187 f~giGer~~e~~el~~ 202 (204)
|+++|+|.+|+.+|++
T Consensus 194 i~~iG~r~~ev~~~~~ 209 (440)
T TIGR01026 194 IALIGERGREVREFIE 209 (440)
T ss_pred EEEEeecchHHHHHHH
Confidence 9999999999999874
No 41
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.95 E-value=2.4e-27 Score=219.23 Aligned_cols=166 Identities=16% Similarity=0.271 Sum_probs=139.0
Q ss_pred ceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccccc
Q psy5597 29 RFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGS 104 (204)
Q Consensus 29 ~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~l 104 (204)
|..+++-++.+++||+|.|. ++ .+.+||++|+ ...++++. .|+.+| ++|.+|+++++||||++|||||+|++
T Consensus 30 g~~~~~~g~~~~ige~~~i~--~~-~~~~eV~~~~~~~~~~~~~~~~~gi~~g-~~v~~~~~~~~v~vg~~~lGrV~d~~ 105 (432)
T PRK06793 30 EQFFVAKGPKAKIGDVCFVG--EH-NVLCEVIAIEKENNMLLPFEQTEKVCYG-DSVTLIAEDVVIPRGNHLLGKVLSAN 105 (432)
T ss_pred EEEEEEEcCCCCcCCEEEEC--CC-CEEEEEEEecCCcEEEEEccCccCCCCC-CEEEECCCccEEEcCHhhccCEECcC
Confidence 34455555699999999993 33 5899999998 45556654 579999 89999999999999999999999999
Q ss_pred ceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccC
Q psy5597 105 GKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSE 180 (204)
Q Consensus 105 G~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~ 180 (204)
|+|+|+++++...+++|++++||+|++|+++++++.||+|+||.++|...+.+.+++ .+|| +++.+++.+...
T Consensus 106 G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKT--tLl~~Ia~~~~~- 182 (432)
T PRK06793 106 GEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKS--TLLGMIAKNAKA- 182 (432)
T ss_pred CccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChH--HHHHHHhccCCC-
Confidence 999999877655567899999999999999999999999999999997777666664 4677 688888887532
Q ss_pred CCCEEEEEeeeccccccchhccc
Q psy5597 181 DMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 181 ~~~~~Vf~giGer~~e~~el~~~ 203 (204)
...++.++|||++|+.||+++
T Consensus 183 --~~gvI~~iGerg~ev~e~~~~ 203 (432)
T PRK06793 183 --DINVISLVGERGREVKDFIRK 203 (432)
T ss_pred --CeEEEEeCCCCcccHHHHHHH
Confidence 356888999999999999864
No 42
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.95 E-value=2.6e-27 Score=219.64 Aligned_cols=160 Identities=21% Similarity=0.302 Sum_probs=132.8
Q ss_pred cccCccCEEEEEecCCC--CeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccceeecC
Q psy5597 37 ENGSMENVCLFLNLAND--PTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDK 110 (204)
Q Consensus 37 ~~~~iGd~c~I~~~~~~--~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~PiDg 110 (204)
..+++||+|.|....+. .+.+||++|+ ...++++. .|+.+| ++|.+||++++||+|++|||||+|++|+|||+
T Consensus 35 ~~~~ige~~~i~~~~~~~~~~~~EVi~~~~~~~~l~~~~~~~gl~~g-~~V~~tg~~~~v~vg~~llGRv~d~~G~plD~ 113 (438)
T PRK07721 35 PESSIGDVCYIHTKGGGDKAIKAEVVGFKDEHVLLMPYTEVAEIAPG-CLVEATGKPLEVKVGSGLIGQVLDALGEPLDG 113 (438)
T ss_pred CCCCchheEEEEecCCCCceEEEEEEEEcCCEEEEEEccCccCCCCC-CEEEECCCccEEEechhhcCCEECcCCCccCC
Confidence 36899999999743222 5899999998 45555554 679999 89999999999999999999999999999998
Q ss_pred CCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCCCEEE
Q psy5597 111 GPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDMLGRV 186 (204)
Q Consensus 111 ~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~~~V 186 (204)
.+......++|++.+||||++|.+++++|+||+++||.|++...+++.++. .+|| +++.+++++... ...+
T Consensus 114 ~~~~~~~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKS--tLl~~I~~~~~~---~~gv 188 (438)
T PRK07721 114 SALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKS--TLMGMIARNTSA---DLNV 188 (438)
T ss_pred CCCCCccccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEEECCCCCCHH--HHHHHHhcccCC---CeEE
Confidence 874444456899999999999999999999999999999987667666664 4677 688877776532 3578
Q ss_pred EEeeeccccccchhcc
Q psy5597 187 FNGSGKPIDKAVRLLR 202 (204)
Q Consensus 187 f~giGer~~e~~el~~ 202 (204)
+.++|||.+|+.||++
T Consensus 189 I~~~Gerg~ev~e~~~ 204 (438)
T PRK07721 189 IALIGERGREVREFIE 204 (438)
T ss_pred EEEEecCCccHHHHHH
Confidence 8999999999999864
No 43
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=99.94 E-value=3.9e-28 Score=213.04 Aligned_cols=115 Identities=50% Similarity=0.750 Sum_probs=103.1
Q ss_pred eeEEeCCcccccccccccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----C
Q psy5597 87 ILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----A 162 (204)
Q Consensus 87 ~~~Vpvg~~lLGRViD~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~ 162 (204)
+++||||++|||||+|++|+|||+++++..++++|++.+||||++|+++++||+||||+||+|+|...|++.|++ +
T Consensus 1 ~~~Vpvg~~lLGRVvd~lG~piD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv 80 (276)
T cd01135 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL 80 (276)
T ss_pred CcEEECChhhcCCEECCCCCCCCCCCCCCCCceeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCC
Confidence 368999999999999999999999888766678899999999999999999999999999999998888888886 5
Q ss_pred Cceehhhhhhhhcccc---cCCCCEEEEEeeeccccccchhccc
Q psy5597 163 KNTVCEFTGDILRTPV---SEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 163 ~ktv~~l~~~~~~~~~---s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
+|| +|+.+++++.. +.+.+++||++||||+||+.|||+.
T Consensus 81 GKt--~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~ 122 (276)
T cd01135 81 PHN--ELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDD 122 (276)
T ss_pred Chh--HHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHH
Confidence 788 68999998863 2346799999999999999999964
No 44
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=99.94 E-value=1.5e-26 Score=214.60 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=139.5
Q ss_pred ccceeeeccccccCccCEEEEEecCCCCeEEEEeeecc--ceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccc
Q psy5597 27 TARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQA--KYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFN 102 (204)
Q Consensus 27 ~~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~~--~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD 102 (204)
...+.+.|++..+++||+|.|+..++ ...|||++|+. ..++++. .|+..| ++|.+ ++++++++|++|||||+|
T Consensus 35 g~~~~~~g~~~~~~iGe~~~i~~~~~-~~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~v~~-~~~~~v~vg~~llGRV~d 111 (450)
T PRK06002 35 ASHYRVRGLSRFVRLGDFVAIRADGG-THLGEVVRVDPDGVTVKPFEPRIEIGLG-DAVFR-KGPLRIRPDPSWKGRVIN 111 (450)
T ss_pred ceEEEEEcCccCCCCCCEEEEECCCC-cEEEEEEEEeCCeEEEEEccCCcCCCCC-CEEEe-CCCceeecCcccccCEEC
Confidence 34477888777999999999964333 58999999994 4555553 579999 78999 568899999999999999
Q ss_pred ccceeecCCCCCCCCc-ceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhccc
Q psy5597 103 GSGKPIDKGPPILAED-YLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTP 177 (204)
Q Consensus 103 ~lG~PiDg~~~~~~~~-~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~ 177 (204)
++|+|||+.+++...+ ++|++.+|||+++|+.+++++.||+++||.|+|...|++.+|. .+|| +++.++++..
T Consensus 112 ~~G~piDg~~~~~~~~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~G~SGsGKT--TLL~~Ia~l~ 189 (450)
T PRK06002 112 ALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKS--TLLAMLARAD 189 (450)
T ss_pred CCCcCCCCCCCCCCCcceeeccCCCCCCeEeecceEEcCCCcEEeeeeceecCCcEEEEECCCCCCHH--HHHHHHhCCC
Confidence 9999999988776544 5799999999999999999999999999999997777777774 4777 7888777664
Q ss_pred ccCCCCEEEEEeeeccccccchhcc
Q psy5597 178 VSEDMLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 178 ~s~~~~~~Vf~giGer~~e~~el~~ 202 (204)
. ....+|.++|||++|+.+|++
T Consensus 190 ~---pd~gvv~liGergrev~e~~~ 211 (450)
T PRK06002 190 A---FDTVVIALVGERGREVREFLE 211 (450)
T ss_pred C---CCeeeeeecccCCccHHHHhH
Confidence 2 336799999999999998865
No 45
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=99.93 E-value=5.9e-27 Score=205.62 Aligned_cols=115 Identities=24% Similarity=0.342 Sum_probs=103.7
Q ss_pred eeEEeCCcccccccccccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----C
Q psy5597 87 ILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----A 162 (204)
Q Consensus 87 ~~~Vpvg~~lLGRViD~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~ 162 (204)
+++||||++|||||+|++|+|||+++++...++||++++||||++|.++++||+||||+||+|+|...|++.+++ .
T Consensus 1 ~~~vpvg~~llGRv~d~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~ 80 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274)
T ss_pred CcEEecChhhcCCEECCCCCccCCCCCCCccccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCC
Confidence 468999999999999999999999988776778999999999999999999999999999999999999988886 5
Q ss_pred CceehhhhhhhhcccccCCCCEEEEEeeeccccccchhccc
Q psy5597 163 KNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 163 ~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
+|| +++.+++++....+...+||++||||.+|+.|||+.
T Consensus 81 GKT--tLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~ 119 (274)
T cd01133 81 GKT--VLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHE 119 (274)
T ss_pred Chh--HHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHH
Confidence 888 688998888654455689999999999999999863
No 46
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=99.92 E-value=1.1e-25 Score=197.62 Aligned_cols=112 Identities=25% Similarity=0.333 Sum_probs=99.4
Q ss_pred eEEeCCcccccccccccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CC
Q psy5597 88 LRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AK 163 (204)
Q Consensus 88 ~~Vpvg~~lLGRViD~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ 163 (204)
++||+|++|||||+|++|+|||+++++...++||++.+||||++|.++++||+||||+||+|+|...|++.|++ +|
T Consensus 2 ~~vpvg~~lLGRvld~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~G 81 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 81 (274)
T ss_pred eEEECCHhhCCCEEccCCCCccCCCCcCcCceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCC
Confidence 68999999999999999999999888777778999999999999999999999999999999999999999996 58
Q ss_pred ceehhh-hhhhhcccccCCCCEEEEEeeeccccccchhccc
Q psy5597 164 NTVCEF-TGDILRTPVSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 164 ktv~~l-~~~~~~~~~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
|| ++ +++++++. +....+||++||||.+|+.||++.
T Consensus 82 Kt--~L~l~~i~~~~--~~~v~~V~~~iGer~~ev~e~~~~ 118 (274)
T cd01132 82 KT--AIAIDTIINQK--GKKVYCIYVAIGQKASTVAQVVKT 118 (274)
T ss_pred cc--HHHHHHHHHhc--CCCeEEEEEecccchHHHHHHHHH
Confidence 88 46 56666664 234677999999999999999863
No 47
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=99.91 E-value=1e-24 Score=198.43 Aligned_cols=166 Identities=38% Similarity=0.678 Sum_probs=147.0
Q ss_pred eeeeccccccCccCEEEEEecCCCCeEEEEeeecc--ceEEEc--CCcccCCccEEEecCCeeEEeCCcccccccccccc
Q psy5597 30 FFKQDFEENGSMENVCLFLNLANDPTIERIITFQA--KYFSIY--NDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSG 105 (204)
Q Consensus 30 ~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~~--~~ll~~--~~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG 105 (204)
+++++. +.++-|+++.|+..++....++|..++. +.++.+ ++|+...++.|+++|++++|++++++|||++|++|
T Consensus 18 v~ve~~-eg~~y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~vs~dllGRifnG~G 96 (463)
T COG1156 18 IIVEGV-EGASYGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIPVSEDLLGRIFNGSG 96 (463)
T ss_pred EEEecc-cCCCcceEEEEECCCCCeeeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEEeecHHhhhhhhcCCC
Confidence 455555 3678899999999888888999999984 455555 47888887789999999999999999999999999
Q ss_pred eeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeee-------eeccCeecccCCceehhhhhhhhcccc
Q psy5597 106 KPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILL-------QVFEGTSGIDAKNTVCEFTGDILRTPV 178 (204)
Q Consensus 106 ~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp-------~v~~gt~Gl~~~ktv~~l~~~~~~~~~ 178 (204)
+|||+.+.+..+++.+|+++|.||..|..++++++|||++||+|++ .+|++ +|++++ ++++++++|+.
T Consensus 97 ~PiDggp~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSg-SGlphN----~LaaqIarQA~ 171 (463)
T COG1156 97 KPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSG-SGLPHN----ELAAQIARQAT 171 (463)
T ss_pred CcCCCCCcCCCCcccccCCCCCCchhhhChhhHhhcCccHHhhhhhhhcccccccccC-CCCchH----HHHHHHHHhcc
Confidence 9999999999889999999999999999999999999999999997 68998 999997 69999999963
Q ss_pred ---cCCCCEEEEEeeeccccccchhc
Q psy5597 179 ---SEDMLGRVFNGSGKPIDKAVRLL 201 (204)
Q Consensus 179 ---s~~~~~~Vf~giGer~~e~~el~ 201 (204)
+++.|.+||+++|-..+++..|-
T Consensus 172 v~~~~e~favVfaamGit~eea~fF~ 197 (463)
T COG1156 172 VDGEEEEFAVVFAAMGITHEEALFFM 197 (463)
T ss_pred cCCCccceeEEEeecCccHHHHHHHH
Confidence 46899999999999999887653
No 48
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=99.87 E-value=2.6e-22 Score=184.60 Aligned_cols=167 Identities=23% Similarity=0.250 Sum_probs=130.5
Q ss_pred cceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccc
Q psy5597 28 ARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNG 103 (204)
Q Consensus 28 ~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~ 103 (204)
|=..+.|++ ++..|+++++.+ .+.+-+.-.+ ...+.++. ..+..| +.|..|++.+.||||++++|||+|+
T Consensus 37 gIa~v~Gl~-~~~~~E~~ef~~----~v~G~alnle~d~VG~vi~g~~~~i~eG-~~v~~Tg~i~~Vpvg~~llGRVVn~ 110 (504)
T COG0056 37 GIARVSGLE-NVMAGELVEFPG----GVKGMALNLEEDSVGAVILGDYSDIKEG-DEVKRTGRILEVPVGEELLGRVVDA 110 (504)
T ss_pred ceEEEecCc-hhhcCceEEecC----CcEEEEEeccccceeEEEecCCccccCC-cEEEeeCceEEEecchhhcceeecC
Confidence 335666664 456677777652 2334443333 33344443 458888 7999999999999999999999999
Q ss_pred cceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeecc----cCCceehhhhhhhhccccc
Q psy5597 104 SGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGI----DAKNTVCEFTGDILRTPVS 179 (204)
Q Consensus 104 lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl----~~~ktv~~l~~~~~~~~~s 179 (204)
+|+|+|+++++......|++..+|+.++|++++|||+|||+|||.|+|+-.|...=+ .+|||-+. +.-+++|.
T Consensus 111 lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGKTaIA-idtIiNQk-- 187 (504)
T COG0056 111 LGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIA-IDTIINQK-- 187 (504)
T ss_pred CCCccCCCCCccccccCccccccCceecccccCchhhhhhHHHhhhcccCCCceEEEeccCcCCcchhh-HHHHHhcc--
Confidence 999999999999889999999999999999999999999999999999888875433 16888432 24444443
Q ss_pred CCCCEEEEEeeeccccccchhccc
Q psy5597 180 EDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 180 ~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
.....|||+++|++...+.+.+++
T Consensus 188 ~~~v~CIYVAIGQK~stva~vv~t 211 (504)
T COG0056 188 GSGVKCIYVAIGQKRSTVANVVRT 211 (504)
T ss_pred cCCcEEEEEEcccchHHHHHHHHH
Confidence 567899999999999999988764
No 49
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=99.81 E-value=1.5e-20 Score=168.73 Aligned_cols=111 Identities=27% Similarity=0.352 Sum_probs=98.2
Q ss_pred eeEEeCCcccccccccccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----C
Q psy5597 87 ILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----A 162 (204)
Q Consensus 87 ~~~Vpvg~~lLGRViD~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~ 162 (204)
+++||||++|||||+|++|+|||+.+++...+++|++.+||||++|.+++++|+||+++||.++|...+++.++. .
T Consensus 1 ~~~v~vg~~~lGrv~d~~G~pid~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CceeeCCcccccCEECCCCcccCCCCCCCCCccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCC
Confidence 468999999999999999999999988766677899999999999999999999999999999998888877775 4
Q ss_pred CceehhhhhhhhcccccCCCCEEEEEeeeccccccchhcc
Q psy5597 163 KNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 163 ~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el~~ 202 (204)
+|| +++.+++++... ...+|.++|+|.+|+.||++
T Consensus 81 GKT--tLl~~Ia~~~~~---~~~vi~~iGer~~ev~~~~~ 115 (326)
T cd01136 81 GKS--TLLGMIARGTTA---DVNVIALIGERGREVREFIE 115 (326)
T ss_pred ChH--HHHHHHhCCCCC---CEEEEEEEecCCccHHHHHH
Confidence 788 688888877543 47899999999999999875
No 50
>KOG1351|consensus
Probab=99.79 E-value=5e-20 Score=163.41 Aligned_cols=161 Identities=44% Similarity=0.745 Sum_probs=129.3
Q ss_pred cCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccceeecCCCCC
Q psy5597 39 GSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI 114 (204)
Q Consensus 39 ~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~PiDg~~~~ 114 (204)
+.-.+++.+.-.+|....++|.... ++.++.+. +|+..--+.+.+||+.++.||++++||||+|+.|+|||.++++
T Consensus 43 p~y~eiv~ltlpdgt~r~gqvlev~g~kavvqvfegtsgid~k~t~~eftg~~lr~pvsedmlgrifngsgkpid~gp~v 122 (489)
T KOG1351|consen 43 PKYAEIVNLTLPDGSVRSGQVLEVSGEKAVVQVFEGTSGIDAKKTTVEFTGEILRTPVSEDMLGRIFNGSGKPIDKGPPV 122 (489)
T ss_pred cchhhheEEecCCCCeecceEEEecCCeeEEEEeccccccccccceEEEecccccccccHHHhhhhhcCCCCccCCCCCc
Confidence 4445666666556666678887776 67777774 6765555789999999999999999999999999999999999
Q ss_pred CCCcceeecCCCCCCccCCCCCcccccceeeeeeeee-------eeccCeecccCC---ceehhhhhhhhcc-----ccc
Q psy5597 115 LAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILL-------QVFEGTSGIDAK---NTVCEFTGDILRT-----PVS 179 (204)
Q Consensus 115 ~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp-------~v~~gt~Gl~~~---ktv~~l~~~~~~~-----~~s 179 (204)
..+.+..|++.|+||.+|-.+.|.++|||.+||.|.. .+|+. +||++. +++|++.+..-+- ..+
T Consensus 123 l~edyldi~gqpinp~~riypeemiqtgis~idvmnsiargqkipifsa-aglphneiaaqicrqaglvk~~~k~~~d~~ 201 (489)
T KOG1351|consen 123 LAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSA-AGLPHNEIAAQICRQAGLVKRPEKDVHDGH 201 (489)
T ss_pred ChHHhhccCCCcCCcccccChHHHHHhCchHHhhhhHHhccCccceeec-CCCChhHHHHHHHHhcCccccCCccccccc
Confidence 9999999999999999999999999999999999995 57776 899874 2334443332211 235
Q ss_pred CCCCEEEEEeeeccccccchh
Q psy5597 180 EDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 180 ~~~~~~Vf~giGer~~e~~el 200 (204)
+++|.+||+++|.+.+.++-|
T Consensus 202 ~dnfaivfaamgvnmetarff 222 (489)
T KOG1351|consen 202 EDNFAIVFAAMGVNMETARFF 222 (489)
T ss_pred ccceeeeehhhcccHHHHHHH
Confidence 789999999999998877654
No 51
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=99.78 E-value=4.7e-19 Score=165.47 Aligned_cols=155 Identities=19% Similarity=0.255 Sum_probs=126.9
Q ss_pred ccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccceeecCC--
Q psy5597 38 NGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKG-- 111 (204)
Q Consensus 38 ~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~PiDg~-- 111 (204)
.+.+-|+|.|- +..+.+|||.++ ++.++.|. .|+.+| .+|..||++++|.+||.||+.|+|++.|||+..
T Consensus 20 ~~~my~~v~Vg---~~~L~gEiI~i~gd~a~iQVyE~T~Gi~~G-e~V~~Tg~pLsvELGPGll~~IyDGiQrPL~~i~e 95 (588)
T COG1155 20 GAKMYDVVKVG---EMGLIGEIIRIEGNRATIQVYEDTAGIRPG-EKVENTGRPLSVELGPGLLKSIYDGIQRPLDVIKE 95 (588)
T ss_pred CCceEEEEEEc---CCceeEEEEEEeCCeEEEEEEeecCCCCCC-CeeecCCCceEEEeCccHHhhhhhhccChHHHHHH
Confidence 47788899884 357999999998 78888885 689999 799999999999999999999999999999742
Q ss_pred ------------CCCCCCc-------------------------------------------------------------
Q psy5597 112 ------------PPILAED------------------------------------------------------------- 118 (204)
Q Consensus 112 ------------~~~~~~~------------------------------------------------------------- 118 (204)
++++.+.
T Consensus 96 ~sg~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~ytv~d~ia~v 175 (588)
T COG1155 96 TSGDFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEYTVEDVIATV 175 (588)
T ss_pred HhhhHhhcCCCCCCCCcccccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCceeeEEEEEE
Confidence 1121111
Q ss_pred -------------ceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCC
Q psy5597 119 -------------YLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSED 181 (204)
Q Consensus 119 -------------~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~ 181 (204)
+||+..+ -+..++.++++||.||.|+||+|+|.+.|||++++ .|||| ...+++++. +
T Consensus 176 ~~~~g~~~~~m~~~WPVR~~-rp~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsGKTV--~qh~laK~s---d 249 (588)
T COG1155 176 STEGGEVDVQMMTTWPVRKA-RPVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKTV--SQHTLSKLA---D 249 (588)
T ss_pred ecCCCeEEEEEEEeccccCC-ccccccCCCCCcccccceeehhhcccccCccccccCCCCCCcEe--hhhhhhhhc---c
Confidence 2444433 34578889999999999999999999999999997 59997 556777776 4
Q ss_pred CCEEEEEeeeccccccchhcc
Q psy5597 182 MLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 182 ~~~~Vf~giGer~~e~~el~~ 202 (204)
..++||.|||||++|..|.+.
T Consensus 250 adiVVyigCGERGNEmtevL~ 270 (588)
T COG1155 250 GDIVIYVGCGERGNEMTEVLQ 270 (588)
T ss_pred CCEEEEEecCCccchHHHHHH
Confidence 459999999999999888654
No 52
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=99.77 E-value=6.1e-19 Score=176.98 Aligned_cols=166 Identities=19% Similarity=0.235 Sum_probs=126.9
Q ss_pred eeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccc
Q psy5597 30 FFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSG 105 (204)
Q Consensus 30 ~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG 105 (204)
+.+.+++ .+++||+|.|. +..+.||||+|+ .+.++++. .|+.+| ++|.+|+++++|++|++|||||+|++|
T Consensus 15 v~a~g~~-~~~iGE~v~I~---~~~l~gEVIg~~~d~a~iq~~e~t~Gl~~G-~~V~~tg~~l~V~lG~~LLGRV~DGlG 89 (1017)
T PRK14698 15 VIADGMK-GAKMYEVVRVG---ELGLIGEIIRLEGDKAVIQVYEETAGLKPG-EPVEGTGSSLSVELGPGLLTSIYDGIQ 89 (1017)
T ss_pred EEEecCc-CCCCCCEEEEC---CCcEEEEEEEEeCCEEEEEECCCCCCCCCC-CEEEEcCCcceeecCHHHhhcccCCCC
Confidence 5666666 89999999993 234899999999 56777764 679998 899999999999999999999999999
Q ss_pred eeecCC--------------CCCCCCcc----------------------------------------------------
Q psy5597 106 KPIDKG--------------PPILAEDY---------------------------------------------------- 119 (204)
Q Consensus 106 ~PiDg~--------------~~~~~~~~---------------------------------------------------- 119 (204)
+||+.. ++++.+..
T Consensus 90 rPL~~~~~~~~~~i~~g~~~~~l~~~~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~~~~g~~~ 169 (1017)
T PRK14698 90 RPLEVIREKSGDFIARGISAPALPRDKKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEIADEGEYT 169 (1017)
T ss_pred ChHHHHHHHhcccccCCCCCCCCCCCCeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEEcCCCCcc
Confidence 999742 12222222
Q ss_pred -----------------------eeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhh
Q psy5597 120 -----------------------LDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGD 172 (204)
Q Consensus 120 -----------------------~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~ 172 (204)
||+.. |-+..++-+.+.||.||+|+||+|+|.+.|||++++ ++|++ .-..
T Consensus 170 ~~~~~~~~~~~~g~~~~~~~~~~wpvr~-~r~~~~~~~~~~pl~tgqrv~d~~fp~~~ggt~~~~G~~G~GKCV--~~dt 246 (1017)
T PRK14698 170 IEEVIAKVKTPSGEIKELKMYQRWPVRV-KRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKCV--DGDT 246 (1017)
T ss_pred eeeEEEEEEcCCCCEEEeeeEecCCCCC-CCcccccCCCCcccccccchHhhhhhhhcCceeEeccCCCcCccc--CCcc
Confidence 33333 346788999999999999999999999999999996 58874 2222
Q ss_pred hhccc----ccCCCCEEEEEeeeccccccchhccc
Q psy5597 173 ILRTP----VSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 173 ~~~~~----~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
++... ..-+-++..|.+.|++.+++.|+|++
T Consensus 247 ~V~l~~g~~i~i~elve~~~g~~~~~~~g~e~~~~ 281 (1017)
T PRK14698 247 LILTKEFGLIKIKDLYEILDGKGKKTVEGNEEWTE 281 (1017)
T ss_pred eEeecCCceeEeccceEeccCCcceeeeccceeee
Confidence 22211 11233577788999999999888853
No 53
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=99.68 E-value=1.2e-17 Score=151.22 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=70.0
Q ss_pred ceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCCCEEEEEeeeccc
Q psy5597 119 YLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPI 194 (204)
Q Consensus 119 ~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~ 194 (204)
.||++.++|++ +|.++++||+||||+||+|+|...|++.+++ .+|| +++.+++++. +.+++||++||||+
T Consensus 122 ~~Pv~~~~P~~-~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT--~L~~~Iak~~---~~dvvVyv~iGERg 195 (369)
T cd01134 122 KWPVRQPRPVK-EKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKT--VIQQSLSKYS---NSDIVIYVGCGERG 195 (369)
T ss_pred eeecccCCCcc-ccCCCCCchhccchhhhccccccCCCEEEEECCCCCChH--HHHHHHHhCC---CCCEEEEEEeCCCh
Confidence 46788888888 9999999999999999999999999999996 5899 5888999986 44589999999999
Q ss_pred cccchhccc
Q psy5597 195 DKAVRLLRY 203 (204)
Q Consensus 195 ~e~~el~~~ 203 (204)
+|+.|+++.
T Consensus 196 ~Ev~e~l~e 204 (369)
T cd01134 196 NEMTEVLEE 204 (369)
T ss_pred HHHHHHHHH
Confidence 999998863
No 54
>PRK12608 transcription termination factor Rho; Provisional
Probab=99.60 E-value=4.5e-16 Score=142.08 Aligned_cols=122 Identities=13% Similarity=-0.024 Sum_probs=103.9
Q ss_pred CcccCCccEEEecCCeeEEeCCcccccccccccceeecCCCCCCCCcceeecCCCCCCccCCCCCccc-ccceeeeeeee
Q psy5597 72 DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMI-QTGISAIDKIL 150 (204)
Q Consensus 72 ~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL-~TGIraID~ll 150 (204)
+++..| +.|..++++ ++++.+||||+|++|+|+|+.. ...++.+..|++|++|.++++++ .+|+|+||.|+
T Consensus 57 ~~l~~G-d~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~----~~~~~~~~~pi~p~~R~~ie~~~~~~~~RvID~l~ 128 (380)
T PRK12608 57 FNLRTG-DVVEGVARP---RERYRVLVRVDSVNGTDPEKLA----RRPHFDDLTPLHPRERLRLETGSDDLSMRVVDLVA 128 (380)
T ss_pred hCCCCC-CEEEeccCC---CCChhheEEEeccCCcCchhcc----cccCcCcCCCCCccccccccccCcchhHhhhhhee
Confidence 479999 899999988 9999999999999999999762 23456788999999999999999 99999999999
Q ss_pred eeeccCeeccc----CCceehhhhhhhhcccccCCC-CEEEEEeeeccccccchhccc
Q psy5597 151 LQVFEGTSGID----AKNTVCEFTGDILRTPVSEDM-LGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 151 p~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~-~~~Vf~giGer~~e~~el~~~ 203 (204)
|.-.|+..+|. +||| +++.+++++....+. ..++++.||||.+|+.|||++
T Consensus 129 PiGkGQR~LIvG~pGtGKT--TLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~ 184 (380)
T PRK12608 129 PIGKGQRGLIVAPPRAGKT--VLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRS 184 (380)
T ss_pred ecCCCceEEEECCCCCCHH--HHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHH
Confidence 98888877764 6899 688888877544332 346999999999999999975
No 55
>KOG1352|consensus
Probab=99.45 E-value=2.1e-14 Score=131.44 Aligned_cols=179 Identities=18% Similarity=0.270 Sum_probs=127.3
Q ss_pred CCCCCceEEEEEeeeeecc-ccceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEE
Q psy5597 8 DDSEDNFAIVFAAMGVNME-TARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICE 82 (204)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~ 82 (204)
|..|..+.-|+++-|=-+- +++. ...+.+++.+- ...+.+||++++ .+.++.|. +|+..| +.|.
T Consensus 15 e~~es~~G~v~~VSGPVV~a~~M~-------G~aMYELVrVG---h~~LvGEiIrlegD~aTIQVYEeTsG~tVg-Dpvl 83 (618)
T KOG1352|consen 15 EEEESEYGRVYSVSGPVVVAENMA-------GCAMYELVRVG---HDELVGEIIRLEGDMATIQVYEETSGLTVG-DPVL 83 (618)
T ss_pred chhhhccceEEeccCceEehhccc-------chHHHHHHHcc---hHhhhhheeEecCceeEEEEEeccCCcccC-Cchh
Confidence 4444456666665542221 2221 23444555553 246889999998 57788885 789999 7999
Q ss_pred ecCCeeEEeCCcccccccccccceeecCCC---------------CCCCCc-----------------------------
Q psy5597 83 FTGDILRTPVSEDMLGRVFNGSGKPIDKGP---------------PILAED----------------------------- 118 (204)
Q Consensus 83 ~tg~~~~Vpvg~~lLGRViD~lG~PiDg~~---------------~~~~~~----------------------------- 118 (204)
.||+|++|.+|+.++|.++|+..+||.... .+..+.
T Consensus 84 rTgkPLsvELGPGimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsl 163 (618)
T KOG1352|consen 84 RTGKPLSVELGPGIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSL 163 (618)
T ss_pred hcCCcceEeeCcchhhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccch
Confidence 999999999999999999999999985321 111111
Q ss_pred ----------------------------------------------ceeecCCCCCCccCCCCCcccccceeeeeeeeee
Q psy5597 119 ----------------------------------------------YLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQ 152 (204)
Q Consensus 119 ----------------------------------------------~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~ 152 (204)
.||+. .|-+..+..+-+.||-||.|+.|+|+|-
T Consensus 164 i~hki~lpPr~~Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR-~pRPv~ekl~an~PLltGQRvLDalfPc 242 (618)
T KOG1352|consen 164 IKHKILLPPRARGTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVR-QPRPVTEKLPANHPLLTGQRVLDALFPC 242 (618)
T ss_pred hhceeecCCccCceEEEEecCCccccccEEEEEeecCceeeEEEEEecccC-CCcchhhccCCCCcccccchHHHhhcch
Confidence 12232 2346778888999999999999999999
Q ss_pred eccCeeccc----CCceehhhhhhhhcccccCCCCEEEEEeeeccccccchhccc
Q psy5597 153 VFEGTSGID----AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 153 v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
+.|||..++ .+||| .-+.+.+. .|.+.+||+|||||++|-.|.++-
T Consensus 243 VqGGTtaIPGAFGCGKTV--ISQsLSKY---SNSD~iiYVGCGERGNEMsEVL~d 292 (618)
T KOG1352|consen 243 VQGGTTAIPGAFGCGKTV--ISQSLSKY---SNSDAIIYVGCGERGNEMSEVLMD 292 (618)
T ss_pred hcCCccccCcccccchHH--HHHHHhhc---cCCCeEEEEcccccchhHHHHHHh
Confidence 999999997 59996 22233333 355699999999999999887653
No 56
>KOG1353|consensus
Probab=99.26 E-value=1.4e-12 Score=113.72 Aligned_cols=120 Identities=22% Similarity=0.220 Sum_probs=90.0
Q ss_pred ccCCccEEEecCCeeEEeCCcccccccccccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeee
Q psy5597 74 NNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQV 153 (204)
Q Consensus 74 i~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v 153 (204)
+.-| ..|..|+....||+++.|+||+.|++|+|+|+++++...+.+ ...|.++.+|.+||+||+|.++|.-
T Consensus 75 ikeg-~~VkrTgaIvDVpvg~~LlgrvvdAlGn~idgkG~i~~~~~~--------ii~r~Sv~epmqtg~KAvdslVpig 145 (340)
T KOG1353|consen 75 IKEG-DTVKRTAAISDVPPLKALLGRVGCALGEPIDGNGKISAKERR--------IIPRASVDEPMQTGLKAVDSLVPIG 145 (340)
T ss_pred eccC-ceEEeeeeeeccCchHHHhhhhhhhhcCeecCCCCccccccc--------cccceeeechhhhhhhHhhceeeec
Confidence 5555 679999999999999999999999999999999988765433 7789999999999999999999965
Q ss_pred ccCeecc----cCCceeh---hhhhhhhcccc--cCCCCEEEEEeeeccccccchhcc
Q psy5597 154 FEGTSGI----DAKNTVC---EFTGDILRTPV--SEDMLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 154 ~~gt~Gl----~~~ktv~---~l~~~~~~~~~--s~~~~~~Vf~giGer~~e~~el~~ 202 (204)
.+...=+ .++||-. +.+++=..|.. +..++.|||+++|+++..+..|..
T Consensus 146 RgqrELiIgdRqTGkTsla~dTI~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~ 203 (340)
T KOG1353|consen 146 RGQRELIIGDRQTGKTSLAIDTILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQ 203 (340)
T ss_pred cCceEEEeccccCCceeeeehhhhhhhhhcccccccceEEEEEEecccchhHHHHHHH
Confidence 4442111 1344421 12222112222 345789999999999999988764
No 57
>KOG1351|consensus
Probab=99.10 E-value=2.2e-11 Score=108.72 Aligned_cols=62 Identities=87% Similarity=1.244 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCceEEEEEeeeeeccccceeeeccccccCccCEEEEEecCCCCeEEEEeeec
Q psy5597 2 PGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ 63 (204)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~ 63 (204)
|+|++.|++||||||||||||||||+|+++.+.|+++.+++..|...+..+++..-.++.-+
T Consensus 193 ~~k~~~d~~~dnfaivfaamgvnmetarffk~dfeengsm~~v~lflnlandptieriitpr 254 (489)
T KOG1351|consen 193 PEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERIITPR 254 (489)
T ss_pred CCcccccccccceeeeehhhcccHHHHHHHHhhHHhcCCccceEEEEecCCCCchhhhcchh
Confidence 79999999999999999999999999999999999999999999998877777766666543
No 58
>PRK12678 transcription termination factor Rho; Provisional
Probab=98.68 E-value=1.3e-08 Score=97.90 Aligned_cols=76 Identities=16% Similarity=0.065 Sum_probs=63.4
Q ss_pred CCCCCccCCCCC-cccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhccccc-CCCCEEEEEeeeccccccc
Q psy5597 125 QPINPYSRTYPQ-EMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVS-EDMLGRVFNGSGKPIDKAV 198 (204)
Q Consensus 125 ~pp~p~~R~~i~-epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s-~~~~~~Vf~giGer~~e~~ 198 (204)
.|++|++|.++. +|+.||+|+||+|+|+-.|+..+|. +||| +++.+|+++... .....+++++||||.+|+.
T Consensus 385 tp~~P~~R~~le~e~~~~giRvIDll~PIGkGQR~LIvgpp~aGKT--tLL~~IAn~i~~n~~~~~~ivvLIgERpeEVt 462 (672)
T PRK12678 385 TPLYPNERLRLETEPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKT--TILQNIANAITTNNPECHLMVVLVDERPEEVT 462 (672)
T ss_pred CCCChHHhcccccCcccccceeeeeecccccCCEeEEeCCCCCCHH--HHHHHHHHHHhhcCCCeEEEEEEEeCchhhHH
Confidence 789999999999 9999999999999999999988885 6999 688888876432 1224567999999999999
Q ss_pred hhcc
Q psy5597 199 RLLR 202 (204)
Q Consensus 199 el~~ 202 (204)
||-+
T Consensus 463 dm~r 466 (672)
T PRK12678 463 DMQR 466 (672)
T ss_pred HHHH
Confidence 8743
No 59
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=98.61 E-value=5e-09 Score=89.40 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=50.4
Q ss_pred cceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCCCEEEEEeeeccccccchhccc
Q psy5597 141 TGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 141 TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
||||+||.|+|...|++.+++ .+|| +++.+++++..++ ..||++||||.+|+.||++.
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt--~Ll~~i~~~~~~d---~~V~~~iGer~~Ev~~~~~~ 62 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKT--VLLQEIANNQDAD---VVVYALIGERGREVTEFIEE 62 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHH--HHHHHHHHHCTTT---EEEEEEESECHHHHHHHHHH
T ss_pred CCCceeccccccccCCEEEEEcCcccccc--hhhHHHHhccccc---ceeeeeccccchhHHHHHHH
Confidence 899999999999999999886 6898 5899999887444 67999999999999999874
No 60
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.56 E-value=4.3e-08 Score=90.68 Aligned_cols=78 Identities=14% Similarity=0.018 Sum_probs=64.7
Q ss_pred CCCCCCccCCCCCc--ccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCC-CEEEEEeeeccccc
Q psy5597 124 GQPINPYSRTYPQE--MIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDM-LGRVFNGSGKPIDK 196 (204)
Q Consensus 124 ~~pp~p~~R~~i~e--pL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~-~~~Vf~giGer~~e 196 (204)
-.|++|++|.++++ |++||+|+||.|+|+..|++.+|. +||| +++.+++++....+. ..+++..+|||.+|
T Consensus 136 l~p~~p~~R~~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKT--TLaK~Ian~I~~nhFDv~~~VvLIgER~~E 213 (416)
T PRK09376 136 LTPLYPNERLRLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKT--VLLQNIANSITTNHPEVHLIVLLIDERPEE 213 (416)
T ss_pred CCCCChhhcccccCCCCcccceeeeeeecccccCceEEEeCCCCCChh--HHHHHHHHHHHhhcCCeEEEEEEeCCchhH
Confidence 37899999999998 899999999999999999988885 6899 688887776544333 35578899999999
Q ss_pred cchhccc
Q psy5597 197 AVRLLRY 203 (204)
Q Consensus 197 ~~el~~~ 203 (204)
+.++++.
T Consensus 214 Vtdiqrs 220 (416)
T PRK09376 214 VTDMQRS 220 (416)
T ss_pred HHHHHHH
Confidence 9998763
No 61
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=97.44 E-value=2.4e-05 Score=72.52 Aligned_cols=55 Identities=62% Similarity=1.061 Sum_probs=50.3
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchhc
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLL 201 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el~ 201 (204)
|.-.+|+|+||+|+++.+|.++|+++.++-..|+++.+++|+|.|+|+|.++++.
T Consensus 52 ~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~vs~dllGRifnG~G~PiDggp~i~ 106 (463)
T COG1156 52 DKAVVQVFEGTSGLDTKGTTVRFTGETLKIPVSEDLLGRIFNGSGKPIDGGPEIV 106 (463)
T ss_pred ceEEEEEeecccCCCCCCceEEEeCceEEEeecHHhhhhhhcCCCCcCCCCCcCC
Confidence 4455799999999998778679999999999999999999999999999999986
No 62
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=96.56 E-value=0.0068 Score=41.92 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=37.4
Q ss_pred ccCccCEEEEEecC-CCCeEEEEeeec--cceEEEcC--CcccCCccEEEecC
Q psy5597 38 NGSMENVCLFLNLA-NDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTG 85 (204)
Q Consensus 38 ~~~iGd~c~I~~~~-~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg 85 (204)
.+.+++.|.++..+ +....|||++|+ .+.+++|. .|+.+| ++|++||
T Consensus 18 ~~g~~~~~~~~~~~~~~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~G-~~V~~tG 69 (69)
T PF02874_consen 18 LPGIGEAVEVELVDFGNGVLGEVVGLDEDEVRLQVFGSTDGLSRG-TEVRFTG 69 (69)
T ss_dssp EEETTTEEEEEEEEETTEEEEEEEEEETTEEEEEESSSGTTSBTT-CEEEEEE
T ss_pred CCCccEEEEEecccceeeeeeeecccCccEEEEEEecCCCCCCCC-CEEEcCc
Confidence 47888999998544 567899999998 56666664 689998 8999986
No 63
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.53 E-value=0.0018 Score=56.42 Aligned_cols=60 Identities=10% Similarity=-0.082 Sum_probs=44.9
Q ss_pred ceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCCC-EEEEEeeeccccccchhccc
Q psy5597 142 GISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDML-GRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 142 GIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~~-~~Vf~giGer~~e~~el~~~ 203 (204)
-.|+||+|+|...|++.++. .||| +++.++.++....+.. .+++..+++|.+++.||++.
T Consensus 3 ~~~~id~~~~i~~Gqr~~I~G~~G~GKT--TLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~ 67 (249)
T cd01128 3 STRVVDLFAPIGKGQRGLIVAPPKAGKT--TLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRS 67 (249)
T ss_pred chhheeeecccCCCCEEEEECCCCCCHH--HHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHH
Confidence 35899999998777777764 5788 7888887775443323 44556699999999999863
No 64
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.33 E-value=0.0062 Score=56.92 Aligned_cols=73 Identities=11% Similarity=-0.025 Sum_probs=52.8
Q ss_pred CccCCCC-CcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCC-CCEEEEEeeeccccccchhcc
Q psy5597 129 PYSRTYP-QEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSED-MLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 129 p~~R~~i-~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~-~~~~Vf~giGer~~e~~el~~ 202 (204)
|.+|..+ ..+=+.|+|+||.++|.-.|++.++. .||| +++.++.+.....+ ...+++..+|||.+|+.||++
T Consensus 141 P~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKT--tL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqr 218 (415)
T TIGR00767 141 PNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKT--VLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQR 218 (415)
T ss_pred CCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChh--HHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHH
Confidence 3344333 24557899999999998888877773 5888 67777776643321 235688899999999999986
Q ss_pred c
Q psy5597 203 Y 203 (204)
Q Consensus 203 ~ 203 (204)
.
T Consensus 219 s 219 (415)
T TIGR00767 219 S 219 (415)
T ss_pred H
Confidence 3
No 65
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=90.06 E-value=0.15 Score=48.05 Aligned_cols=54 Identities=50% Similarity=0.776 Sum_probs=46.0
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchhc
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLL 201 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el~ 201 (204)
|....++|++|.|+..+.. +.++++.++-..+++.+++||++.|++.|+.+++.
T Consensus 48 ~~v~~~~~~~t~Gl~~g~~-V~~tg~~~~vpvg~~lLGRV~d~~G~PiD~~~~~~ 101 (436)
T PRK02118 48 DKVTLQVFGGTRGISTGDE-VVFLGRPMQVTYSESLLGRRFNGSGKPIDGGPELE 101 (436)
T ss_pred CEEEEEEecCCcCCCCCCE-EEeCCCceEEEcCccccCCEEccCCcccCCCCCCC
Confidence 4445699999999998766 47889999999999999999999999999887653
No 66
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=88.22 E-value=0.23 Score=51.33 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.5
Q ss_pred CCCEEEEEeeeccccccchhccc
Q psy5597 181 DMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 181 ~~~~~Vf~giGer~~e~~el~~~ 203 (204)
+.+++||++||||++|+.|+++.
T Consensus 681 ~adi~V~~~iGERg~Ev~e~l~~ 703 (1017)
T PRK14698 681 DAQVVIYIGCGERGNEMTDVLEE 703 (1017)
T ss_pred CCCEEEEEeeccchHHHHHHHHH
Confidence 55699999999999999999863
No 67
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=85.10 E-value=0.34 Score=47.30 Aligned_cols=52 Identities=40% Similarity=0.734 Sum_probs=44.6
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccch
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVR 199 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~e 199 (204)
|....|+|+.|.||..+..| .+++++..-.+++..+++||+|+|+|.++..+
T Consensus 46 d~a~iqv~e~T~Gl~~G~~V-~~tg~plsv~lGpglLGrv~Dg~grPLd~~~~ 97 (586)
T PRK04192 46 DKATIQVYEETSGIKPGEPV-EFTGEPLSVELGPGLLGSIFDGIQRPLDELAE 97 (586)
T ss_pred CceEEEEecCCcCCCCCCEE-EeCCCccEEEcCHHhcCCeecCCCCcccccch
Confidence 33456999999999987664 78899888888999999999999999998874
No 68
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=83.31 E-value=0.51 Score=44.80 Aligned_cols=54 Identities=54% Similarity=0.935 Sum_probs=44.5
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|....+.|+++.|+..+.+.+..+++..+-..+++.+++||++.|++.|+...+
T Consensus 47 ~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v~vg~~lLGRViD~~G~plD~~~~~ 100 (458)
T TIGR01041 47 GLAVVQVFEGTTGLDPTGTKVRFTGETLKLPVSEDMLGRILNGSGEPIDGGPEI 100 (458)
T ss_pred CEEEEEEecCCcCcCCCCcEEEECCCceEEEcChhhccCEEccCCcccCCCCCC
Confidence 445568999999998766534688888888889999999999999999986654
No 69
>PRK06936 type III secretion system ATPase; Provisional
Probab=82.88 E-value=0.59 Score=44.19 Aligned_cols=54 Identities=31% Similarity=0.487 Sum_probs=45.1
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchhc
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLL 201 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el~ 201 (204)
|..+.+.|+.+.|+..+..| .++++..+-..+++.+++||++.|++.|+...+.
T Consensus 69 ~~~~l~~~~~~~gi~~g~~V-~~tg~~~~v~vg~~lLGRV~d~~G~plD~~~~~~ 122 (439)
T PRK06936 69 HQALLTPLGEMYGISSNTEV-SPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPE 122 (439)
T ss_pred CeEEEEecCCCCCCCCCCEE-EeCCCceEEEeCccccCCEECCCCCccCCCCCCC
Confidence 34456889999999987664 7888888888999999999999999999876653
No 70
>PRK09099 type III secretion system ATPase; Provisional
Probab=82.62 E-value=0.7 Score=43.69 Aligned_cols=53 Identities=38% Similarity=0.544 Sum_probs=44.9
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|..+.+.|+.+.|+..+..| .+++...+-..+++.+++||++.|++.|+...+
T Consensus 70 ~~~~l~~~~~t~gi~~g~~V-~~tg~~~~v~vg~~lLGrV~d~~G~piD~~~~~ 122 (441)
T PRK09099 70 DVALLSPFGELGGLSRGTRV-IGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPL 122 (441)
T ss_pred CEEEEEEccCCcCCCCCCEE-EeCCCccEEEeccccccCEEcccCCccCCCCCC
Confidence 44556899999999987664 788888888889999999999999999987554
No 71
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=81.36 E-value=0.83 Score=43.13 Aligned_cols=50 Identities=34% Similarity=0.527 Sum_probs=42.7
Q ss_pred eeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccch
Q psy5597 149 ILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVR 199 (204)
Q Consensus 149 llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~e 199 (204)
.+.+.|+.+.|+..+..| .++++..+-..+++.+++||++.|++.|+.+.
T Consensus 65 ~~l~~~~~~~gi~~g~~V-~~tg~~~~v~vg~~llGrVid~~G~pld~~~~ 114 (433)
T PRK07594 65 ALLSPFTSTIGLHCGQQV-MALRRRHQVPVGEALLGRVIDGFGRPLDGREL 114 (433)
T ss_pred EEEEEccCCcCCCCCCEE-EeCCCccEEEeChhhccCEEcccCCCcCCCCC
Confidence 446889999999987664 68888888888999999999999999998754
No 72
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=81.15 E-value=0.77 Score=43.52 Aligned_cols=53 Identities=30% Similarity=0.463 Sum_probs=45.0
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|..+.+.|+++.|+..+..| .+++...+-..+++.+++||++.|++.|+..++
T Consensus 69 ~~~~l~~~~~~~gi~~g~~V-~~tg~~~~v~vg~~llGRVid~~G~plD~~~~~ 121 (444)
T PRK08972 69 DLLYLMPIEELRGVLPGARV-TPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPI 121 (444)
T ss_pred CEEEEEECCCcCCCCCCCEE-EECCCccEEEcChhhcCCeECCCCCCcCCCCCC
Confidence 44556899999999987664 688888888889999999999999999987665
No 73
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=80.71 E-value=0.69 Score=44.42 Aligned_cols=52 Identities=37% Similarity=0.540 Sum_probs=44.0
Q ss_pred eeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 148 KILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 148 ~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
....++|+.+.|+..+..| +++++..+-..+++.+++||++.|++.|+...+
T Consensus 70 ~~~~~~~~~~~gi~~g~~V-~~~~~~~~v~vg~~llGrv~d~~G~pid~~~~~ 121 (502)
T PRK09281 70 NVGAVILGDYEDIKEGDTV-KRTGRILEVPVGEALLGRVVNPLGQPIDGKGPI 121 (502)
T ss_pred eEEEEEecCcccccCCCee-eecCCceEEecCHHhcCCEEccCCCCcCCCCCC
Confidence 3446889999999987664 788998888899999999999999999987654
No 74
>COG1158 Rho Transcription termination factor [Transcription]
Probab=80.56 E-value=1.7 Score=40.28 Aligned_cols=57 Identities=14% Similarity=0.026 Sum_probs=42.8
Q ss_pred eeeeeeeeeeeccCeeccc-----CCceehhhhhhhhcccccCCCC-EEEEEeeeccccccchhcc
Q psy5597 143 ISAIDKILLQVFEGTSGID-----AKNTVCEFTGDILRTPVSEDML-GRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 143 IraID~llp~v~~gt~Gl~-----~~ktv~~l~~~~~~~~~s~~~~-~~Vf~giGer~~e~~el~~ 202 (204)
-|+||.+.|+-+|+ .||- .||| +++..+++.....|.. .-+.-.+.||-.|+-|+-+
T Consensus 161 ~RviDL~~PIGkGQ-R~LIVAPPkaGKT--~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqr 223 (422)
T COG1158 161 TRVIDLISPIGKGQ-RGLIVAPPKAGKT--TLLQNIANAITTNHPECELIVLLIDERPEEVTDMQR 223 (422)
T ss_pred hHHHhhhcccCCCc-eeeEecCCCCCch--HHHHHHHHHHhcCCCceEEEEEEecCCchHHHHHHH
Confidence 37899999999998 7773 4999 5888888775443333 4566689999999887643
No 75
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=79.64 E-value=1 Score=42.60 Aligned_cols=53 Identities=28% Similarity=0.368 Sum_probs=44.0
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|..+.+.|+.+.|+..+..| .++++..+-..+++.+++|+++.|++.|+...+
T Consensus 62 ~~~~l~~~~~~~gi~~g~~v-~~~~~~~~v~vg~~llGrv~d~~G~pld~~~~~ 114 (434)
T PRK07196 62 DITYLMPFKHPGGVLGGARV-FPSEQDGELLIGDSWLGRVINGLGEPLDGKGQL 114 (434)
T ss_pred CEEEEEECCCccCCCCCCEE-EECCCccEEEcCccccCCeeCcCCCCcCCCCCC
Confidence 44556889999999987664 788888888889999999999999999976543
No 76
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=79.60 E-value=0.89 Score=42.64 Aligned_cols=53 Identities=38% Similarity=0.551 Sum_probs=44.4
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|..+.+.|+.+.||..+..| .++++..+-..+++.+++||++.|++.|+...+
T Consensus 50 ~~~~l~~~~~~~gl~~G~~V-~~tg~~~~v~vg~~lLGrViD~~G~plD~~~~~ 102 (422)
T TIGR02546 50 DEALLSPLGELHGISPGSEV-IPTGRPLSIRVGEALLGRVLDGFGRPLDGKGEL 102 (422)
T ss_pred CcEEEEEccCccCCCCCCEE-EECCCCceEEeChhhccCEeCCCCCcccCCCCC
Confidence 44456889999999987664 688888888889999999999999999987654
No 77
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=78.90 E-value=0.92 Score=42.83 Aligned_cols=53 Identities=26% Similarity=0.454 Sum_probs=44.3
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|..+.+.|+.+.||..+..| .+++...+-..+++.+++||++.|++.|+..++
T Consensus 64 ~~~~l~~~~~t~gl~~G~~V-~~tg~~~~v~vg~~llGRViD~~G~plD~~g~~ 116 (434)
T PRK08472 64 EQFGISPFSFIEGFKIGDKV-FISKEGLNIPVGRNLLGRVVDPLGRPIDGKGAI 116 (434)
T ss_pred CeEEEEEccCCCCCCCCCEE-EeCCCceEEEcChhhcCCEECCCCCcccCCCCC
Confidence 44556889999999987765 678888888889999999999999999987654
No 78
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=78.78 E-value=1.2 Score=42.41 Aligned_cols=51 Identities=31% Similarity=0.449 Sum_probs=42.9
Q ss_pred eeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 149 ILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 149 llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
.+.+.++++.||..+..| +++++..+-..+++.+++||++.|++.|+...+
T Consensus 53 ~~~~~~~~~~gi~~G~~V-~~tg~~~~v~vg~~lLGRViD~~G~pld~~~~~ 103 (463)
T PRK09280 53 VRTIAMGSTDGLVRGMEV-IDTGAPISVPVGKATLGRIFNVLGEPIDEKGPI 103 (463)
T ss_pred EEEEEecCccCCCCCCEE-EeCCCceEEEcChhhcCCEEeeeccccCCCCCc
Confidence 335788999999987664 688888888889999999999999999987654
No 79
>PRK06820 type III secretion system ATPase; Validated
Probab=78.70 E-value=1.1 Score=42.47 Aligned_cols=53 Identities=28% Similarity=0.517 Sum_probs=43.6
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|..+.+.|+++.|+..+.. |.++++..+-..+++.+++||++.|++.|+...+
T Consensus 71 ~~~~l~~~~~~~gi~~g~~-v~~tg~~~~v~vg~~llGrv~d~~G~pld~~~~~ 123 (440)
T PRK06820 71 EMALLSPFASSDGLRCGQW-VTPLGHMHQVQVGADLAGRILDGLGAPIDGGPPL 123 (440)
T ss_pred CeEEEEEccCccCCCCCCE-EEECCCCcEEEechhhcCCEECccCCccCCCCCC
Confidence 4455688999999988765 4788888888888999999999999999987643
No 80
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=78.45 E-value=1 Score=42.25 Aligned_cols=53 Identities=32% Similarity=0.541 Sum_probs=44.4
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|....+.|+++.||..+..| .++++..+-..+++.+++||++.|++.|+..++
T Consensus 44 ~~v~l~~~~~t~gl~~G~~V-~~tg~~~~vpvg~~lLGRVid~~G~plD~~~~~ 96 (413)
T TIGR03497 44 ENVLLMPLGEVEGIGPGSLV-IATGRPLAIKVGKGLLGRVLDGLGRPLDGEGPI 96 (413)
T ss_pred CeEEEEEccCccCCCCCCEE-EEcCCeeEEEcchhhcCCEEcCCCCcccCCCCC
Confidence 44556899999999987664 677888888889999999999999999987654
No 81
>PRK05922 type III secretion system ATPase; Validated
Probab=77.99 E-value=1 Score=42.50 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=44.2
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|..+.+.|+.+.|+..+..| .+++...+-..+++.+++||++.|++.|+...+
T Consensus 64 ~~~~l~~~~~~~gi~~G~~V-~~~~~~~~v~vg~~llGrv~d~~G~pld~~~~~ 116 (434)
T PRK05922 64 RTTLLMSLSPIHYVALGAEV-LPLRRPPSLHLSDHLLGRVLDGFGNPLDGKEQL 116 (434)
T ss_pred CeEEEEEccCCCCCCCCCEE-EeCCCCcEEEcChhhcCCEeCCCCCccCCCCCC
Confidence 34556889999999987765 688888888889999999999999999987644
No 82
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=76.69 E-value=1.3 Score=41.96 Aligned_cols=53 Identities=30% Similarity=0.381 Sum_probs=44.0
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|..+.+.|+.+.|+..+..| .+++...+-..+++.+++|+++.|++.|+...+
T Consensus 64 ~~~~l~~~~~~~gi~~g~~V-~~tg~~~~v~vg~~llGRVid~~G~piDg~~~~ 116 (442)
T PRK08927 64 DRALLMPFGPLEGVRRGCRA-VIANAAAAVRPSRAWLGRVVNALGEPIDGKGPL 116 (442)
T ss_pred CeEEEEEccCccCCCCCCEE-EeCCCccEEECChhhCCCEEccCCCCccCCCCC
Confidence 34556889999999977654 688888888889999999999999999987654
No 83
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=76.64 E-value=1.4 Score=41.83 Aligned_cols=53 Identities=55% Similarity=1.000 Sum_probs=43.9
Q ss_pred eeeeeeeccCeeccc-CCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGID-AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~-~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|..+.++|+.+.|+. .+.. |..++...+-..+++.+++||++.|++.|+.+++
T Consensus 49 ~~~~l~~~~~t~gl~i~G~~-V~~tg~~~~V~vg~~lLGRVvD~~G~PlD~~~~i 102 (460)
T PRK04196 49 DKAVVQVFEGTTGLDLKDTK-VRFTGEPLKLPVSEDMLGRIFDGLGRPIDGGPEI 102 (460)
T ss_pred CeEEEEEccCCCCCCCCCCE-EEeCCCccEEEcCcccccCEECccCCCccCCCCC
Confidence 445568899999999 6655 4678888888889999999999999999987654
No 84
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=76.64 E-value=1.1 Score=43.76 Aligned_cols=51 Identities=35% Similarity=0.595 Sum_probs=43.4
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccc
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAV 198 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~ 198 (204)
|..+.|+++.|.||..+..| ..+++...-.+.+..+++||+++|+|.++..
T Consensus 43 d~a~iqvye~t~Gl~~G~~V-~~tg~plsV~lGpglLGrV~DgigrPLd~~~ 93 (578)
T TIGR01043 43 DKAFIQVYEETSGIKPGEPV-VGTGAPLSVELGPGLLGSIYDGVQRPLDVLK 93 (578)
T ss_pred CeEEEEECCCCCCCCCCCEE-EECCCccEEEcCHHHhcceeccCCccccCcc
Confidence 44556899999999988775 6788888888889999999999999999764
No 85
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=76.07 E-value=1.5 Score=42.33 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=42.4
Q ss_pred eeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccch
Q psy5597 149 ILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVR 199 (204)
Q Consensus 149 llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~e 199 (204)
...++|+++.|+..+.+| ..+++.++-..+++.+++|+++.|++.|+..+
T Consensus 47 v~~~~l~~~~gi~~G~~V-~~tg~~~~vpvg~~lLGRVvd~lG~piDg~g~ 96 (507)
T PRK07165 47 AYLLINNEKGKIKINDEL-IELNNTNKVKTSKEYFGKIIDIDGNIIYPEAQ 96 (507)
T ss_pred EEEEEccCccCCCCCCEE-EECCCccEEECCccccCCEECCCCcccCCCCC
Confidence 445788999999887664 78888888889999999999999999998763
No 86
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=75.79 E-value=1.2 Score=41.94 Aligned_cols=51 Identities=27% Similarity=0.512 Sum_probs=43.2
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccc
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAV 198 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~ 198 (204)
|..+.+.|+.+.|+..+..| .+++...+-..+++.+++||++.|++.|+..
T Consensus 65 ~~~~l~~~~~~~gl~~g~~V-~~tg~~~~v~vg~~llGRv~d~~G~plD~~~ 115 (438)
T PRK07721 65 EHVLLMPYTEVAEIAPGCLV-EATGKPLEVKVGSGLIGQVLDALGEPLDGSA 115 (438)
T ss_pred CEEEEEEccCccCCCCCCEE-EECCCccEEEechhhcCCEECcCCCccCCCC
Confidence 34456899999999987664 7888888888999999999999999999754
No 87
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=74.91 E-value=1.5 Score=41.41 Aligned_cols=51 Identities=35% Similarity=0.587 Sum_probs=44.2
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccc
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAV 198 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~ 198 (204)
|....+.++.+.||..+..| .++++..+-..+++.+++||++.|++.|+..
T Consensus 69 ~~v~l~~~~~t~gl~~G~~V-~~tg~~~~v~vg~~llGRVid~~G~plD~~~ 119 (440)
T TIGR01026 69 EFVFLMPYEEVEGVRPGSKV-LATGEGLSIKVGDGLLGRVLDGLGKPIDGKG 119 (440)
T ss_pred CEEEEEEccCCcCCCCCCEE-EeCCCccEEEcChhhhhceecCCCcccCCCC
Confidence 55667899999999987664 7888888888899999999999999999876
No 88
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=74.88 E-value=1.6 Score=41.49 Aligned_cols=53 Identities=30% Similarity=0.458 Sum_probs=43.2
Q ss_pred eeeeeeeccCeecccCCceehhhh-------hhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFT-------GDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~-------~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|..+.+.|+.+.|+..+..| +++ +...+-..+++.+++|+++.|++.|+...+
T Consensus 75 ~~~~l~~~~~~~gi~~g~~v-~~~~~~~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~ 134 (455)
T PRK07960 75 QRLFLMPLEEVEGILPGARV-YARNISGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAP 134 (455)
T ss_pred CEEEEEECCCccCCCCCCEE-EECCcccccCCCceEEECCcccccCEECCCccccCCCCCC
Confidence 34456789999999987765 565 777777889999999999999999987654
No 89
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=74.86 E-value=1.4 Score=41.32 Aligned_cols=53 Identities=34% Similarity=0.425 Sum_probs=43.6
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|....+.++.+.||..+..| .+++...+-..+++.+++||++.|++.|+...+
T Consensus 46 ~~v~l~~~~~~~gi~~G~~V-~~tg~~~~i~vg~~lLGRViD~lG~plD~~~~~ 98 (418)
T TIGR03498 46 DRVLLMPFEPLEGVGLGCAV-FAREGPLAVRPHPSWLGRVINALGEPIDGKGPL 98 (418)
T ss_pred CeEEEEEccCCcCCCCCCEE-EECCCccEEEeChhhcCCEECCCCCccCCCCCC
Confidence 34456788999999887664 678888888889999999999999999987554
No 90
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=74.23 E-value=1.8 Score=41.23 Aligned_cols=51 Identities=84% Similarity=1.297 Sum_probs=42.5
Q ss_pred eeeeeccCeecccC-CceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 149 ILLQVFEGTSGIDA-KNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 149 llp~v~~gt~Gl~~-~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
.+.+.|+++.|+.. +.. |.+++...+-..+++.+++||++.|++.|+...+
T Consensus 49 ~~l~~~~~~~gi~~~g~~-V~~t~~~~~v~vg~~lLGRVid~~G~piD~~~~~ 100 (466)
T TIGR01040 49 AVVQVFEGTSGIDAKKTT-CEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPV 100 (466)
T ss_pred EEEEEcCCCCCcccCCCE-EEECCCccEEEcCcccccCEECccccccCCCCCC
Confidence 44578899999985 655 4788888888899999999999999999987654
No 91
>PRK06315 type III secretion system ATPase; Provisional
Probab=74.06 E-value=2 Score=40.73 Aligned_cols=49 Identities=33% Similarity=0.534 Sum_probs=42.7
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccc
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 196 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e 196 (204)
|..+.+.++.+.|+..+..| .+++...+-..+++.+++||++.|++.|+
T Consensus 68 ~~~~l~~~~~~~gi~~g~~V-~~~g~~~~v~vg~~llGrv~d~~G~pld~ 116 (442)
T PRK06315 68 NFVFLSPLGELTGVSPSSEV-IPTGLPLHIRAGNGLLGRVLNGLGEPIDT 116 (442)
T ss_pred CeEEEEEccCCcCCCCCCEE-EeCCCccEEEecccccCCEEeccCccccc
Confidence 55667899999999987765 67888888888999999999999999997
No 92
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=72.26 E-value=1.8 Score=41.07 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=43.5
Q ss_pred eeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 148 KILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 148 ~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
....+.++++.|+..+..| ..++...+-..+++.+++|+++.|++.|+...+
T Consensus 46 ~v~l~~l~~t~Gi~~G~~V-~~tg~~~~VpVg~~lLGRVlD~~G~PiD~~~~~ 97 (449)
T TIGR03305 46 HVRGIALTPTQGLARGMPV-RDSGGPLKAPVGKPTLSRMFDVFGNTIDRREPP 97 (449)
T ss_pred eEEEEEccCcccCCCCCEE-EecCCceEEEcChhhcCCEEccCccccCCCCCC
Confidence 3445788999999987664 677888888889999999999999999987654
No 93
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=71.86 E-value=2.3 Score=40.40 Aligned_cols=53 Identities=32% Similarity=0.512 Sum_probs=43.8
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|..+.+.|+.+.|+..+..| ..++...+-..+++.+++||++.|++.|+...+
T Consensus 75 ~~~~l~~~~~~~gi~~g~~V-~~tg~~~~v~vg~~llGRV~d~~G~plD~~~~~ 127 (451)
T PRK05688 75 DKVFLMPVGSVAGIAPGARV-VPLADTGRLPMGMSMLGRVLDGAGRALDGKGPM 127 (451)
T ss_pred CEEEEEEccCccCCCCCCEE-EECCCccEEEecccccCCEEeccCceecCCCCC
Confidence 44556889999999887654 678888888889999999999999999987544
No 94
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=71.67 E-value=2.4 Score=40.42 Aligned_cols=51 Identities=31% Similarity=0.524 Sum_probs=42.4
Q ss_pred eeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 149 ILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 149 llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
.+.+.++.+.||..+..| .+++...+-..+++.+++||++.|++.|+...+
T Consensus 52 v~l~~~~~~~gl~~G~~V-~~tg~~~~v~vg~~llGRVid~~G~plD~~~~~ 102 (461)
T PRK12597 52 VRAIALGSTSGLARGDEV-RNTGGPIEVPVGEAVLGRLLDVLGEPLDGGPPL 102 (461)
T ss_pred EEEEEecCccCCCCCCEE-EeCCCceEEEcChhhcCCEEeeccccccCCCCC
Confidence 445778889999887664 677888888889999999999999999987654
No 95
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=70.58 E-value=2.1 Score=40.05 Aligned_cols=51 Identities=35% Similarity=0.569 Sum_probs=42.9
Q ss_pred eeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 149 ILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 149 llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
...+.|+.+.|+..+..| .++++..+-..+++.+++||++.|++.|+.+.+
T Consensus 46 v~l~~~~~t~gl~~G~~V-~~tg~~~~v~vg~~llGrVid~~G~pld~~~~~ 96 (411)
T TIGR03496 46 VLLMPLEDVEGLRPGARV-FPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGPL 96 (411)
T ss_pred EEEEEccCccCCCCCCEE-EECCCccEEEcchhhcCCEECCCCCCcCCCCCC
Confidence 445888999999887664 678888888889999999999999999987654
No 96
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=69.60 E-value=2.1 Score=41.18 Aligned_cols=51 Identities=31% Similarity=0.545 Sum_probs=42.8
Q ss_pred eeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 149 ILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 149 llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
...++|+.+.||..+..| ..++..++-..+++.+++|+++.|++.|+...+
T Consensus 71 v~~~~l~~~~gi~~G~~V-~~tg~~~~vpvg~~llGRVvd~lG~PiDg~~~~ 121 (497)
T TIGR03324 71 VGVVLLGEYSHLQAGDEV-ERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPL 121 (497)
T ss_pred EEEEEecCCcCCcCCCEE-EECCCCCeEECCHhhCcCEECCCCCCcCCCCCC
Confidence 345788999999987664 678888888899999999999999999987654
No 97
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=68.08 E-value=2.3 Score=40.89 Aligned_cols=51 Identities=37% Similarity=0.570 Sum_probs=42.1
Q ss_pred eeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 149 ILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 149 llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
...++++.+.|+..+..| ..+++..+-..+++.+++||++.|++.|+...+
T Consensus 70 ~~~~~~~~~~gi~~G~~V-~~tg~~~~v~vg~~llGRV~d~~G~pld~~~~~ 120 (501)
T TIGR00962 70 VGAVIMGDYSNIREGSTV-KRTGRILKVPVGDGLLGRVVNALGQPIDGKGPI 120 (501)
T ss_pred EEEEEecCCcCCCCCCee-EecCCccEEecChHhcCCEeCCCCCeeCCCCCc
Confidence 345788888999887664 677888888889999999999999999976544
No 98
>cd01735 LSm12_N LSm12 belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm12 has a novel methyltransferase domain.
Probab=67.90 E-value=10 Score=26.35 Aligned_cols=25 Identities=8% Similarity=0.053 Sum_probs=22.4
Q ss_pred CccCEEEEEecCCCCeEEEEeeecc
Q psy5597 40 SMENVCLFLNLANDPTIERIITFQA 64 (204)
Q Consensus 40 ~iGd~c~I~~~~~~~~~aEVVg~~~ 64 (204)
++|..+.+.+-.++.+.+||+.|+.
T Consensus 4 ~iGs~V~~kTc~g~~ieGEV~afD~ 28 (61)
T cd01735 4 SVGSQVSCRTCFEQRLQGEVVAFDY 28 (61)
T ss_pred ccccEEEEEecCCceEEEEEEEecC
Confidence 6899999998888899999999983
No 99
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=66.27 E-value=3.8 Score=39.41 Aligned_cols=106 Identities=24% Similarity=0.297 Sum_probs=63.7
Q ss_pred eCCcccccccccccceeecCCCCCC-C---CcceeecCCCCCCccCC-CCCcccccceeeeeeeeeeeccCeecccCCce
Q psy5597 91 PVSEDMLGRVFNGSGKPIDKGPPIL-A---EDYLDIEGQPINPYSRT-YPQEMIQTGISAIDKILLQVFEGTSGIDAKNT 165 (204)
Q Consensus 91 pvg~~lLGRViD~lG~PiDg~~~~~-~---~~~~pi~~~pp~p~~R~-~i~epL~TGIraID~llp~v~~gt~Gl~~~kt 165 (204)
.+-+.+.|||....|..++-.++.. - .+...+... ...... .+ .---.|++--|......++++.||..+..
T Consensus 10 ~~~~~~~G~V~~v~G~viev~~~~~~iP~ig~~~~i~~~--~~~~~~~~~-~~EVvg~~~~~~v~~~~l~~~~gi~~G~~ 86 (494)
T CHL00060 10 TLEEKNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGR--DTAGQEINV-TCEVQQLLGNNRVRAVAMSATDGLMRGME 86 (494)
T ss_pred ccccccceEEEEEEccEEEEEecCCCcCCcCCEEEEccC--CCCCccceE-EEEEEEEeCCCeEEEEeccCccCCCCCCE
Confidence 4456677888888888887443210 0 111222100 000000 00 00112222224455678899999998766
Q ss_pred ehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 166 VCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 166 v~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
| ..++...+-..+++.+++|+++.|++.|+...+
T Consensus 87 V-~~tg~~~~vpvg~~lLGRVid~~G~piDg~~~~ 120 (494)
T CHL00060 87 V-IDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPV 120 (494)
T ss_pred E-EeCCCcceeecchhhcCCEEeecCcccCCCCCC
Confidence 4 677888888889999999999999999986544
No 100
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=62.05 E-value=4.4 Score=38.64 Aligned_cols=51 Identities=31% Similarity=0.463 Sum_probs=41.9
Q ss_pred eeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 149 ILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 149 llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
.+...++.+.|+..+..| ..++...+-..+++.+++|+++.|++.|+...+
T Consensus 52 v~l~~l~~~~gi~~G~~V-~~t~~~~~i~vg~~lLGRViD~~G~pid~~~~~ 102 (461)
T TIGR01039 52 VRTIAMGSTDGLVRGLEV-IDTGAPISVPVGKETLGRIFNVLGEPIDEKGPI 102 (461)
T ss_pred EEEEEccCcccCCCCCEE-EeCCCceEEEcChhhcCCEEccCCcccCCCCCC
Confidence 345678888999987664 677888888889999999999999999987654
No 101
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=61.04 E-value=3.8 Score=39.47 Aligned_cols=49 Identities=35% Similarity=0.579 Sum_probs=41.4
Q ss_pred eeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 151 LQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 151 p~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
.++|+.+.|+..+..| +.++...+-..+++.+++|+++.|++.|+...+
T Consensus 73 ~~~l~~~~gi~~G~~V-~~tg~~~~vpvg~~llGRVid~lG~piDg~~~i 121 (502)
T PRK13343 73 AVLLDDTADILAGTEV-RRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPL 121 (502)
T ss_pred EEEeeCCCCCCCCCEe-EecCCcceeecCHHhcCCEECCCCCcccCCCCC
Confidence 4778888999877654 788888888889999999999999999987654
No 102
>PRK08149 ATP synthase SpaL; Validated
Probab=60.80 E-value=3.9 Score=38.59 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=41.4
Q ss_pred eeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccc
Q psy5597 148 KILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAV 198 (204)
Q Consensus 148 ~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~ 198 (204)
..+.+.|+.+.|+..+..| .+++...+-..+++.+++|+++.|++.|+..
T Consensus 55 ~~~l~~~~~~~gi~~g~~v-~~~~~~~~v~vg~~llGrv~d~~G~piD~~~ 104 (428)
T PRK08149 55 RTILSLIGNAQGLSRQVVL-KPTGKPLSVWVGEALLGAVLDPTGKIVERFD 104 (428)
T ss_pred EEEEEECCCccCCCCCCEE-EEcCCcCEEEeChhhcCCeeCCCCCCcCCCC
Confidence 3445789999999987654 6778888888889999999999999999874
No 103
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=59.99 E-value=5.3 Score=37.97 Aligned_cols=51 Identities=29% Similarity=0.335 Sum_probs=39.0
Q ss_pred eeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 148 KILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 148 ~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
..+.+.|+++.|+..+..|. . ....+...+++.+++|+++.|++.|+...+
T Consensus 73 ~~~l~~~~~~~gi~~g~~v~-~-~~~~~v~vg~~llGRV~d~~G~piDg~~~~ 123 (450)
T PRK06002 73 GVTVKPFEPRIEIGLGDAVF-R-KGPLRIRPDPSWKGRVINALGEPIDGLGPL 123 (450)
T ss_pred eEEEEEccCCcCCCCCCEEE-e-CCCceeecCcccccCEECCCCcCCCCCCCC
Confidence 34457788889998877753 2 444555668899999999999999987655
No 104
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=59.23 E-value=4.2 Score=39.03 Aligned_cols=51 Identities=35% Similarity=0.475 Sum_probs=42.0
Q ss_pred eeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 149 ILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 149 llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
...++|+.+.|+..+..| ..+++..+-..+++.+++|+++.|++.|+...+
T Consensus 50 v~~~~l~~~~gi~~G~~V-~~tg~~~~vpvg~~llGRVvd~lG~piDg~~~~ 100 (485)
T CHL00059 50 VGVVLMGDGLMIQEGSSV-KATGKIAQIPVSEAYLGRVVNALAKPIDGKGEI 100 (485)
T ss_pred EEEEEeeCCCCCCCCCEE-EECCCcceEEcCHhhcCCEECCCCCeeCCCCCc
Confidence 334688888999887765 678888888889999999999999999976543
No 105
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=57.86 E-value=4.7 Score=38.10 Aligned_cols=50 Identities=20% Similarity=0.395 Sum_probs=41.5
Q ss_pred eeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 150 LLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 150 lp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
+.+.|+.+.|+..+..| ..++...+-..+++.+++|+++.|++.|+...+
T Consensus 66 ~~~~~~~~~gi~~g~~v-~~~~~~~~v~vg~~~lGrV~d~~G~piD~~~~~ 115 (432)
T PRK06793 66 MLLPFEQTEKVCYGDSV-TLIAEDVVIPRGNHLLGKVLSANGEVLNEEAEN 115 (432)
T ss_pred EEEEccCccCCCCCCEE-EECCCccEEEcCHhhccCEECcCCccCCCCCCC
Confidence 34788888999887665 677888888889999999999999999986543
No 106
>PTZ00185 ATPase alpha subunit; Provisional
Probab=56.58 E-value=6.5 Score=38.40 Aligned_cols=47 Identities=23% Similarity=0.419 Sum_probs=40.5
Q ss_pred eeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeecccccc
Q psy5597 150 LLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKA 197 (204)
Q Consensus 150 lp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~ 197 (204)
..++|+++.|+..+..| ..++..++-..+++.+++|+++.|++.|+.
T Consensus 92 ~~v~lg~~~gI~~G~~V-~~tg~~~~VpVG~~lLGRVvD~lG~PIDg~ 138 (574)
T PTZ00185 92 GIILMDNITEVQSGQKV-MATGKLLYIPVGAGVLGKVVNPLGHEVPVG 138 (574)
T ss_pred EEEEecCccCCCCCCEE-EECCCccEEECCcccccCEECCCCcccCCC
Confidence 34678888999877664 688888888999999999999999999976
No 107
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=49.68 E-value=5.5 Score=39.14 Aligned_cols=51 Identities=33% Similarity=0.586 Sum_probs=41.7
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccc
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAV 198 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~ 198 (204)
|..+.|+++.|.||..+..| ..++......+.+..+++||+|+|++.++..
T Consensus 44 d~a~iq~ye~t~Gl~~G~~V-~~tg~~lsv~lGpglLG~V~DgigrPLd~~~ 94 (591)
T TIGR01042 44 DKATIQVYEETSGLTVGDPV-LRTGKPLSVELGPGILGNIFDGIQRPLKAIA 94 (591)
T ss_pred CeEEEEEccCccCCCCCCEE-EeCCCccEEEcCHHHhhcccCcCCCchHHHH
Confidence 33456899999999988775 5667777777788999999999999999764
No 108
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=37.51 E-value=12 Score=30.75 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=23.5
Q ss_pred cccceeeeeeeee-eeccC-------eecccCCceehhhhhhhhcccc
Q psy5597 139 IQTGISAIDKILL-QVFEG-------TSGIDAKNTVCEFTGDILRTPV 178 (204)
Q Consensus 139 L~TGIraID~llp-~v~~g-------t~Gl~~~ktv~~l~~~~~~~~~ 178 (204)
+.|||..+|.++. ++..| ..| .||| +|..+++.+..
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~G--sGKT--~l~~~~a~~~~ 44 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPG--TGKT--NIAIQLAVETA 44 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCC--CCHH--HHHHHHHHHHH
Confidence 5799999999995 22222 133 4677 57777776654
No 109
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=36.50 E-value=29 Score=29.52 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=29.0
Q ss_pred cccccceeeeeeeeeeec-------cCeecccCCceehhhhhhhhcccccCCCCEEEEEee
Q psy5597 137 EMIQTGISAIDKILLQVF-------EGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGS 190 (204)
Q Consensus 137 epL~TGIraID~llp~v~-------~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~gi 190 (204)
+-+.||+..+|.++-++. +|..| .||| +|+.+++.+.+..+..-+.|...
T Consensus 11 ~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G--~GKT--~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 11 EEVWWPFPVLNKLTKGLRKGELIILTAGTG--VGKT--TFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred cCCCCCcceeeeeeEEEcCCcEEEEEcCCC--CCHH--HHHHHHHHHHHHhcCceEEEEEc
Confidence 355799999999984333 33333 4577 57777766654332333444444
No 110
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=27.68 E-value=21 Score=29.61 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=25.7
Q ss_pred Ccccccceeeeeeeeee-eccCee----cc-cCCceehhhhhhhhcccc
Q psy5597 136 QEMIQTGISAIDKILLQ-VFEGTS----GI-DAKNTVCEFTGDILRTPV 178 (204)
Q Consensus 136 ~epL~TGIraID~llp~-v~~gt~----Gl-~~~ktv~~l~~~~~~~~~ 178 (204)
++.+.||+..+|-++.+ +..|+. |- +.||| +|+.+++.+.+
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT--~l~~~la~~~~ 48 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKT--NICLQLAVEAA 48 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHH--HHHHHHHHHHH
Confidence 56799999999999952 222211 11 24677 57777766543
No 111
>PF13998 MgrB: MgrB protein
Probab=25.76 E-value=46 Score=19.84 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=13.6
Q ss_pred cccccceeeeeeeee
Q psy5597 137 EMIQTGISAIDKILL 151 (204)
Q Consensus 137 epL~TGIraID~llp 151 (204)
+++.+||-+|..++|
T Consensus 14 ~~F~~GiC~it~~iP 28 (29)
T PF13998_consen 14 EQFFSGICSITRFIP 28 (29)
T ss_pred CCceeeeeEEeeecC
Confidence 789999999999887
No 112
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=22.22 E-value=25 Score=29.69 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=33.7
Q ss_pred ccccceeeeeeeee-e-------eccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeecccccc
Q psy5597 138 MIQTGISAIDKILL-Q-------VFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKA 197 (204)
Q Consensus 138 pL~TGIraID~llp-~-------v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~ 197 (204)
.+.|||.-+|.++. + ...|..| .||| +|..+++.+.+. +.-.++|...-|..++.
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pG--sGKT--~la~~~l~~~~~-~ge~~lyvs~ee~~~~i 64 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPG--TGKS--IFSQQFLWNGLQ-MGEPGIYVALEEHPVQV 64 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCC--CCHH--HHHHHHHHHHHH-cCCcEEEEEeeCCHHHH
Confidence 47899999999885 2 2222233 4677 576666655432 23367777777765543
Done!