Query psy5597
Match_columns 204
No_of_seqs 203 out of 2075
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 21:36:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gqb_B V-type ATP synthase bet 100.0 2.6E-34 8.9E-39 265.9 10.8 170 30-203 19-207 (464)
2 3vr4_D V-type sodium ATPase su 100.0 3.3E-34 1.1E-38 265.3 11.2 170 30-203 23-204 (465)
3 2c61_A A-type ATP synthase non 100.0 5.9E-34 2E-38 264.3 9.2 170 30-203 25-205 (469)
4 1fx0_B ATP synthase beta chain 100.0 3E-33 1E-37 260.8 11.3 171 30-203 31-215 (498)
5 3oaa_A ATP synthase subunit al 100.0 1.4E-32 4.9E-37 256.4 12.1 167 27-203 36-211 (513)
6 2ck3_D ATP synthase subunit be 100.0 1.9E-32 6.4E-37 254.6 12.5 167 32-202 27-202 (482)
7 1fx0_A ATP synthase alpha chai 100.0 3.8E-32 1.3E-36 253.9 11.4 166 28-203 38-212 (507)
8 2qe7_A ATP synthase subunit al 100.0 3.6E-32 1.2E-36 253.8 11.0 166 28-203 37-211 (502)
9 2ck3_A ATP synthase subunit al 100.0 4.9E-32 1.7E-36 253.3 11.2 168 28-203 37-219 (510)
10 2r9v_A ATP synthase subunit al 100.0 4E-32 1.4E-36 253.8 9.6 167 28-203 49-224 (515)
11 1sky_E F1-ATPase, F1-ATP synth 100.0 9.2E-30 3.2E-34 236.4 9.5 170 30-202 14-200 (473)
12 3vr4_A V-type sodium ATPase ca 100.0 1.3E-29 4.4E-34 239.6 8.4 163 30-203 21-279 (600)
13 3gqb_A V-type ATP synthase alp 100.0 3.7E-29 1.3E-33 235.7 9.0 163 30-203 14-268 (578)
14 3mfy_A V-type ATP synthase alp 99.9 1.6E-29 5.5E-34 238.3 0.3 163 30-203 15-274 (588)
15 2dpy_A FLII, flagellum-specifi 99.9 3.3E-22 1.1E-26 183.8 12.3 165 29-201 20-202 (438)
16 2obl_A ESCN; ATPase, hydrolase 99.7 1.6E-18 5.3E-23 155.0 4.4 112 87-203 2-118 (347)
17 3l0o_A Transcription terminati 99.3 3.6E-13 1.2E-17 123.1 0.5 122 72-203 96-226 (427)
18 3ice_A Transcription terminati 98.7 1.1E-09 3.9E-14 100.0 -1.9 77 125-203 140-225 (422)
19 3gqb_B V-type ATP synthase bet 84.4 0.31 1.1E-05 45.0 1.4 53 147-200 53-106 (464)
20 3gqb_A V-type ATP synthase alp 82.7 0.17 5.7E-06 48.0 -1.2 52 147-199 45-96 (578)
21 1fx0_B ATP synthase beta chain 82.7 0.24 8.3E-06 46.1 -0.1 52 148-200 73-124 (498)
22 2c61_A A-type ATP synthase non 82.1 0.2 6.9E-06 46.3 -0.8 53 147-200 59-111 (469)
23 3vr4_A V-type sodium ATPase ca 81.2 0.25 8.7E-06 47.0 -0.5 51 147-198 52-102 (600)
24 3vr4_D V-type sodium ATPase su 81.0 0.38 1.3E-05 44.5 0.6 53 147-200 57-110 (465)
25 3oaa_A ATP synthase subunit al 79.1 0.42 1.5E-05 44.7 0.2 50 150-200 72-121 (513)
26 3mfy_A V-type ATP synthase alp 76.3 0.47 1.6E-05 45.0 -0.3 52 147-199 46-97 (588)
27 1fx0_A ATP synthase alpha chai 75.6 0.51 1.7E-05 44.1 -0.3 53 147-200 70-122 (507)
28 2qe7_A ATP synthase subunit al 75.1 0.5 1.7E-05 44.0 -0.5 53 147-200 69-121 (502)
29 2ck3_D ATP synthase subunit be 74.4 0.56 1.9E-05 43.5 -0.4 51 149-200 62-112 (482)
30 2ck3_A ATP synthase subunit al 74.1 0.54 1.8E-05 43.9 -0.5 51 149-200 71-121 (510)
31 1sky_E F1-ATPase, F1-ATP synth 73.0 0.57 1.9E-05 43.3 -0.7 53 147-200 57-109 (473)
32 2r9v_A ATP synthase subunit al 67.6 0.77 2.6E-05 42.9 -1.1 51 149-200 84-134 (515)
33 2dpy_A FLII, flagellum-specifi 52.2 3.3 0.00011 37.4 0.3 52 147-199 57-115 (438)
34 2zts_A Putative uncharacterize 50.4 1.5 5.2E-05 34.7 -2.1 53 137-193 10-70 (251)
35 2w0m_A SSO2452; RECA, SSPF, un 28.5 9.5 0.00032 29.4 -0.6 39 137-177 3-47 (235)
36 3p87_G Ribonuclease H2 subunit 21.0 12 0.00041 20.3 -0.9 10 141-150 3-12 (23)
37 3bh0_A DNAB-like replicative h 20.8 19 0.00064 30.4 -0.3 43 136-180 48-95 (315)
No 1
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=2.6e-34 Score=265.93 Aligned_cols=170 Identities=28% Similarity=0.401 Sum_probs=149.6
Q ss_pred eeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--Cccc-CCccEEEecCCeeEEeCCccccccccccc
Q psy5597 30 FFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNN-RGSFICEFTGDILRTPVSEDMLGRVFNGS 104 (204)
Q Consensus 30 ~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~-~Gg~~V~~tg~~~~Vpvg~~lLGRViD~l 104 (204)
+.+.|+. .+++||+|+|...++....|||++|+ .+.++++. .|+. .| ++|.+||++++||||++|||||+|++
T Consensus 19 v~v~gl~-~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g-~~V~~tg~~~~vpvg~~lLGRV~d~l 96 (464)
T 3gqb_B 19 LFVENAK-DLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLAT-TSVSLVEDVARLGVSKEMLGRRFNGI 96 (464)
T ss_dssp EEEESCT-TSCTTCEEEEECTTSCEEEEEEEEEESSEEEEEESSCCTTCCSSS-CEEEEEESSCEEEECSTTTTEEEETT
T ss_pred EEEecCC-CCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCC-CEEEECCCCcEEEeChHhcCCEeccC
Confidence 6666665 79999999998655656899999999 45666664 5798 56 89999999999999999999999999
Q ss_pred ceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhccccc-
Q psy5597 105 GKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVS- 179 (204)
Q Consensus 105 G~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s- 179 (204)
|+|||+++++..++++|++++||||++|.++++||+||||+||+|+|...|++.||+ ++|| +++.++++++..
T Consensus 97 G~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt--~L~~~Ia~~~~a~ 174 (464)
T 3gqb_B 97 GKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPAN--EIAAQIARQATVR 174 (464)
T ss_dssp CCBCSSSCCCCCSEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCHH--HHHHHHHHHCBCC
T ss_pred CcccCCCccccCcceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEecCCCCCch--HHHHHHHHHHHhc
Confidence 999999999888888999999999999999999999999999999999999888886 5888 588889888643
Q ss_pred ---------CCCCEEEEEeeeccccccchhccc
Q psy5597 180 ---------EDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 180 ---------~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
.+.+++||++||||.+|+.||++.
T Consensus 175 ~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~ 207 (464)
T 3gqb_B 175 PDLSGEGEKEEPFAVVFAAMGITQRELSYFIQE 207 (464)
T ss_dssp HHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHH
T ss_pred ccccccccCCCceEEEEEEecCchHHHHHHHHH
Confidence 345699999999999999999863
No 2
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=3.3e-34 Score=265.28 Aligned_cols=170 Identities=33% Similarity=0.498 Sum_probs=149.6
Q ss_pred eeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--Cccc-CCccEEEecCCeeEEeCCccccccccccc
Q psy5597 30 FFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNN-RGSFICEFTGDILRTPVSEDMLGRVFNGS 104 (204)
Q Consensus 30 ~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~-~Gg~~V~~tg~~~~Vpvg~~lLGRViD~l 104 (204)
+.++|+. .+++||+|+|...++..+.|||++|+ .+.++++. .|+. .| ++|.+||++++||||++|||||+|++
T Consensus 23 v~v~gl~-~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g-~~V~~tg~~~~vpvg~~lLGRV~d~l 100 (465)
T 3vr4_D 23 MAVEKVS-GVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSGINLKN-SSVRFLGHPLQLGVSEDMIGRVFDGL 100 (465)
T ss_dssp EEEESCC-SCCTTCEEEEECTTSCEEEEEEEEEESSEEEEEETTCCTTCCTTT-CEEEECSSCCEEEECGGGTTEEEETT
T ss_pred EEEecCC-CCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCC-CEEEECCCcceeecchhhccceeccC
Confidence 6666664 79999999998655657899999999 45666664 5788 56 89999999999999999999999999
Q ss_pred ceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhccccc-
Q psy5597 105 GKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVS- 179 (204)
Q Consensus 105 G~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s- 179 (204)
|+|||+++++..++++|++++||+|++|.++++||+||||+||+|+|...|++.||+ ++|| ++++++++++..
T Consensus 101 G~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt--~L~~~Ia~~~~~~ 178 (465)
T 3vr4_D 101 GRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHK--ELAAQIARQATVL 178 (465)
T ss_dssp SCBCSCCCCCCCSEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHH--HHHHHHHHHCBCS
T ss_pred CcccCCCCCCcccceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCCCCcChH--HHHHHHHHHHHhc
Confidence 999999999888888999999999999999999999999999999999888888886 5788 588899888653
Q ss_pred --CCCCEEEEEeeeccccccchhccc
Q psy5597 180 --EDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 180 --~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
.+.+++||++||||.+|+.||++.
T Consensus 179 ~d~~~~~~V~~~iGeR~~Ev~e~~~~ 204 (465)
T 3vr4_D 179 DSSDDFAVVFAAIGITFEEAEFFMED 204 (465)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHH
T ss_pred cCCCceEEEEEEecCCcHHHHHHHHH
Confidence 356799999999999999999863
No 3
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=5.9e-34 Score=264.25 Aligned_cols=170 Identities=28% Similarity=0.427 Sum_probs=139.7
Q ss_pred eeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccc
Q psy5597 30 FFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSG 105 (204)
Q Consensus 30 ~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG 105 (204)
+.++++ ..+++||+|+|...++....|||++++ .+.++++. .|+..| ++|.+||++++||||++|||||+|++|
T Consensus 25 v~v~g~-~~~~~ge~v~i~~~~g~~~~geV~~~~~~~v~~~~~~~t~gl~~G-~~V~~tg~~l~vpvg~~lLGRV~d~lG 102 (469)
T 2c61_A 25 IFVEKT-EPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKD-CGVIFTGETLKLPASVDLLGRILSGSG 102 (469)
T ss_dssp EEEECC-SCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEC--------------CEEEBCEEEECGGGTTCEEETTS
T ss_pred EEEeeC-CCCCcCCEEEEEeCCCCEEEEEEEEEeCCEEEEEEeCCCcCCCCC-CEEEEcCCCcEEEccccceeeEEcccC
Confidence 566666 489999999997544445789999998 45666664 579999 899999999999999999999999999
Q ss_pred eeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhccccc--
Q psy5597 106 KPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVS-- 179 (204)
Q Consensus 106 ~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s-- 179 (204)
+|||+++++..+.++|++++||+|++|.++++||+||||+||+|+|...|++.||+ ++|| +++.+++++...
T Consensus 103 ~PiDg~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GKt--~Ll~~Ia~~~~~n~ 180 (469)
T 2c61_A 103 EPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHN--EIALQIARQASVPG 180 (469)
T ss_dssp CBSSSCCCCCCSEEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHH--HHHHHHHHHCBCTT
T ss_pred CCCCCCCCCCccccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEECCCCCCHH--HHHHHHHHHHhhcc
Confidence 99999998887788999999999999999999999999999999999999998886 5888 699999988643
Q ss_pred -CCCCEEEEEeeeccccccchhccc
Q psy5597 180 -EDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 180 -~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
++.+++||++||||.+|+.||++.
T Consensus 181 ~~~~~~~V~~~iGER~~Ev~e~~~~ 205 (469)
T 2c61_A 181 SESAFAVVFAAMGITNEEAQYFMSD 205 (469)
T ss_dssp CSSCEEEEEEEEEECHHHHHHHHHH
T ss_pred CCCCcEEEEEEccCCcHHHHHHHHH
Confidence 234799999999999999999863
No 4
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=3e-33 Score=260.80 Aligned_cols=171 Identities=18% Similarity=0.165 Sum_probs=147.9
Q ss_pred eeeeccc-cccCccCEEEEEecC--CC--CeEEEEee-ec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccc
Q psy5597 30 FFKQDFE-ENGSMENVCLFLNLA--ND--PTIERIIT-FQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGR 99 (204)
Q Consensus 30 ~~v~~~~-~~~~iGd~c~I~~~~--~~--~~~aEVVg-~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGR 99 (204)
+.+++.+ ..+.+++.|.|...+ +. .+.+||++ +. ...++++. .|+.+| ++|.+||++++||||++||||
T Consensus 31 v~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G-~~V~~tg~~~~vpvG~~lLGR 109 (498)
T 1fx0_B 31 LNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRG-MEVIDTGAPLSVPVGGPTLGR 109 (498)
T ss_dssp EEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTT-CEEEECSSSCEEEESSTTTTC
T ss_pred EEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCC-CEEEecCCcceEecCccceee
Confidence 4455553 468999999996422 23 57899999 65 44566774 689999 899999999999999999999
Q ss_pred cccccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhc
Q psy5597 100 VFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILR 175 (204)
Q Consensus 100 ViD~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~ 175 (204)
|+|++|+|||+++++..+++|||+.+||+|++|.++++||+||||+||+|+|...|++.||+ ++|| ++++++++
T Consensus 110 V~d~lG~PiD~~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~gIfgg~GvGKT--~L~~~l~~ 187 (498)
T 1fx0_B 110 IFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKT--VLIMELIN 187 (498)
T ss_dssp EECTTSCBCSSSSCCCCSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSSHH--HHHHHHHH
T ss_pred EEcccccCCCCcCCcCCCceeccccCCCchhhhcccccccccceeEeeeecccccCCeEEeecCCCCCch--HHHHHHHH
Confidence 99999999999988887788999999999999999999999999999999999999999986 6898 58999999
Q ss_pred ccccCCCCEEEEEeeeccccccchhccc
Q psy5597 176 TPVSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 176 ~~~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
|....+..++||++||||.||+.|||+.
T Consensus 188 ~~a~~~~~v~V~~~iGER~rEv~e~~~~ 215 (498)
T 1fx0_B 188 NIAKAHGGVSVFGGVGERTREGNDLYME 215 (498)
T ss_dssp HTTTTCSSCEEEEEESCCSHHHHHHHHH
T ss_pred HHHhhCCCEEEEEEcccCcHHHHHHHHh
Confidence 8655556799999999999999999863
No 5
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=99.98 E-value=1.4e-32 Score=256.44 Aligned_cols=167 Identities=17% Similarity=0.236 Sum_probs=146.0
Q ss_pred ccceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCccccccccc
Q psy5597 27 TARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFN 102 (204)
Q Consensus 27 ~~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD 102 (204)
.+-+.+.|+. .+++||+|++. + ...|||++++ ...++++. .|+..| ++|.+||++++||||++|||||+|
T Consensus 36 g~i~~v~Gl~-~~~~gElv~~~--~--~~~g~v~~l~~d~v~~~~~~~~~gi~~G-~~V~~tg~~~~VpvG~~lLGRV~d 109 (513)
T 3oaa_A 36 DGVIRIHGLA-DCMQGEMISLP--G--NRYAIALNLERDSVGAVVMGPYADLAEG-MKVKCTGRILEVPVGRGLLGRVVN 109 (513)
T ss_dssp TTEEEEEECT-TCBTTCEEEET--T--TEEEEEEEECSSCEEEEESSCCSSCCTT-CEEECCSCSSEEECSGGGTTCEEE
T ss_pred CcEEEEECCc-cCCcCCEEEEC--C--CCEEEEEEeeCCEEEEEEeCCccCCCCC-CEEEEcCCCCeEeeCHHHhccchh
Confidence 3347788886 79999999994 2 3789999998 55667764 679998 899999999999999999999999
Q ss_pred ccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhh-hhhhhccc
Q psy5597 103 GSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEF-TGDILRTP 177 (204)
Q Consensus 103 ~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l-~~~~~~~~ 177 (204)
++|+|||+++++...+++|++.+||+|++|+++++||+||||+||+|+|...|++.||+ +||| ++ +.+++++.
T Consensus 110 ~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l~PigrGQR~~Ifg~~g~GKT--~l~l~~I~n~~ 187 (513)
T 3oaa_A 110 TLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKT--ALAIDAIINQR 187 (513)
T ss_dssp TTSCBTTCSCSCCCSCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHHSCCBTTCBCEEEESSSSSHH--HHHHHHHHTTS
T ss_pred hcCcCccCCCCCCccceeecccCCCCccccCCcCcccccceeeeccccccccCCEEEeecCCCCCcc--hHHHHHHHhhc
Confidence 99999999999988889999999999999999999999999999999999999998886 6888 46 56776664
Q ss_pred ccCCCCEEEEEeeeccccccchhccc
Q psy5597 178 VSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 178 ~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
...+.+||++||||.+|+.||++.
T Consensus 188 --~~dv~~V~~~IGeR~~ev~e~~~~ 211 (513)
T 3oaa_A 188 --DSGIKCIYVAIGQKASTISNVVRK 211 (513)
T ss_dssp --SSSCEEEEEEESCCHHHHHHHHHH
T ss_pred --cCCceEEEEEecCChHHHHHHHHH
Confidence 344679999999999999999864
No 6
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=99.98 E-value=1.9e-32 Score=254.62 Aligned_cols=167 Identities=21% Similarity=0.240 Sum_probs=147.1
Q ss_pred eeccccccCccCEEEEEecCCCCeEEEEee-ecc--ceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccce
Q psy5597 32 KQDFEENGSMENVCLFLNLANDPTIERIIT-FQA--KYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGK 106 (204)
Q Consensus 32 v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg-~~~--~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG~ 106 (204)
+++.+..+.+++.|.|... +..+.+||++ ++. ..++++. .|+.+| ++|.+||++++||||++|||||+|++|+
T Consensus 27 v~~~~~~~~i~~~~~i~~~-~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G-~~V~~tg~~~~vpvG~~lLGRV~d~lG~ 104 (482)
T 2ck3_D 27 VQFDEGLPPILNALEVQGR-ETRLVLEVAQHLGESTVRTIAMDGTEGLVRG-QKVLDSGAPIRIPVGPETLGRIMNVIGE 104 (482)
T ss_dssp EEESSCCCCTTCEEEESSC-SSCCEEEEEEEEETTEEEEEESSCCTTCBTT-CEEEECSSSCEEECSGGGBTCEECTTSC
T ss_pred EEecCccCcccceEEEeeC-CCcEEEEEeEEecCCeEEEEeccCccCCCCC-CEEEEcCCcceeeccccccCCEEcccCc
Confidence 4555778999999998542 3468999999 663 4566774 689999 8999999999999999999999999999
Q ss_pred eecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccCCC
Q psy5597 107 PIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSEDM 182 (204)
Q Consensus 107 PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~~~ 182 (204)
|||+++++...++||++.+||++++|+++++||+||||+||+|+|...|++.||+ +||| +++.++++|....+.
T Consensus 105 PiDg~~~~~~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT--~L~~~i~~~~~~~~~ 182 (482)
T 2ck3_D 105 PIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT--VLIMELINNVAKAHG 182 (482)
T ss_dssp BCSSSCSCCCCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHH--HHHHHHHHHTTTTCS
T ss_pred CcCCcCCCCccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeecCCCCChH--HHHHHHHHhhHhhCC
Confidence 9999988877788999999999999999999999999999999999999999996 6898 589999988655556
Q ss_pred CEEEEEeeeccccccchhcc
Q psy5597 183 LGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 183 ~~~Vf~giGer~~e~~el~~ 202 (204)
.++||++||||.+|+.|||+
T Consensus 183 ~v~V~~~iGER~rEv~e~~~ 202 (482)
T 2ck3_D 183 GYSVFAGVGERTREGNDLYH 202 (482)
T ss_dssp SEEEEEEESCCHHHHHHHHH
T ss_pred CEEEEEECCCcchHHHHHHH
Confidence 78999999999999999986
No 7
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=99.97 E-value=3.8e-32 Score=253.85 Aligned_cols=166 Identities=24% Similarity=0.205 Sum_probs=145.0
Q ss_pred cceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccc
Q psy5597 28 ARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNG 103 (204)
Q Consensus 28 ~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~ 103 (204)
+-+.+.|+. .+++||+|++.+ + ..+||++++ ...++++. .|+..| ++|.+||++++||||++|||||+|+
T Consensus 38 ~iv~v~gl~-~~~~ge~~~i~~--g--~~g~v~~l~~~~v~~~~~~~~~gi~~G-~~V~~tg~~~~vpvG~~lLGRVvd~ 111 (507)
T 1fx0_A 38 GIARIHGLD-EVMAGELVEFEE--G--TIGIALNLESNNVGVVLMGDGLMIQEG-SSVKATGRIAQIPVSEAYLGRVINA 111 (507)
T ss_dssp SEEEEEECT-TCCTTCCEEETT--C--CEEEEEEECSSEEEEEECSCGGGCCTT-CEEECCCCCCEEEESSSCSSCCCCS
T ss_pred CEEEEEECC-CccCCCEEEECC--C--ceEEEEeccCCeEEEEEecCccCCcCC-CEEEEeCCcceeecCccceeEEEcc
Confidence 337788876 799999999942 3 579999999 45566664 579999 8999999999999999999999999
Q ss_pred cceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhh-hhhhhcccc
Q psy5597 104 SGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEF-TGDILRTPV 178 (204)
Q Consensus 104 lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l-~~~~~~~~~ 178 (204)
+|+|||+++++...++||++.+||+|++|.++++||+||||+||+|+|...|++.|++ +||| ++ +.+++++..
T Consensus 112 lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT--~Lal~~I~~~~~ 189 (507)
T 1fx0_A 112 LAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKT--AVATDTILNQQG 189 (507)
T ss_dssp SSCCSSSSCCCCCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCBTTCBCBEEESSSSSHH--HHHHHHHHTCCT
T ss_pred CCcCCCCCCCCCCCceeeccCCCCCcccccccCCcccccceecccccccccCCEEEEecCCCCCcc--HHHHHHHHHhhc
Confidence 9999999999888888999999999999999999999999999999999999998886 6888 46 667777753
Q ss_pred cCCCCEEEEEeeeccccccchhccc
Q psy5597 179 SEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 179 s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
..+.+||++||||.+|+.||++.
T Consensus 190 --~dv~~V~~~iGeR~~Ev~~~~~~ 212 (507)
T 1fx0_A 190 --QNVICVYVAIGQKASSVAQVVTN 212 (507)
T ss_dssp --TTCEEEEEEESCCHHHHHHHHHH
T ss_pred --CCcEEEEEEcCCCchHHHHHHHH
Confidence 44689999999999999999864
No 8
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=99.97 E-value=3.6e-32 Score=253.78 Aligned_cols=166 Identities=22% Similarity=0.249 Sum_probs=144.6
Q ss_pred cceeeeccccccCccCEEEEEecCCCCeEEEEeeecc--ceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccc
Q psy5597 28 ARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQA--KYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNG 103 (204)
Q Consensus 28 ~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~~--~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~ 103 (204)
+-+.+.|+. .+++||+|++.+ + ..+||++++. ..++++. .|+..| ++|.+||++++||||++|||||+|+
T Consensus 37 ~iv~v~gl~-~~~~ge~~~i~~--g--~~g~v~~l~~~~v~~~~~~~~~gi~~G-~~V~~tg~~~~vpvG~~lLGRVvd~ 110 (502)
T 2qe7_A 37 GIARVHGLE-KVMAGELLEFEN--G--VMGMAQNLEEDNVGVVILGPYTEIREG-TQVKRTGRIMEVPVGEALLGRVVNP 110 (502)
T ss_dssp TEEEEECCT-TCBTTEEEEETT--S--CEEEEEEEETTEEEEEECSCCSSCCTT-CEEEEEEEESEEECSGGGTTCEECT
T ss_pred cEEEEEECC-CCCCCCEEEECC--C--CEEEEEEecCCeEEEEEecCccCCcCC-CEEEEeCCcceEEcccccceEEEcc
Confidence 347778876 799999999942 3 5799999994 5566664 679999 8999999999999999999999999
Q ss_pred cceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhh-hhhhhcccc
Q psy5597 104 SGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEF-TGDILRTPV 178 (204)
Q Consensus 104 lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l-~~~~~~~~~ 178 (204)
+|+|||+++++...++||++.+||+|++|+++++||+||||+||+|+|...|++.|++ +||| ++ +.+++++..
T Consensus 111 lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT--~Lal~~I~~~~~ 188 (502)
T 2qe7_A 111 LGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKT--TIAIDTIINQKG 188 (502)
T ss_dssp TCCBSSCSCCCCCCCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHSSCCBTTCBCEEEECSSSCHH--HHHHHHHHGGGS
T ss_pred CCCCCCCCCCCCCCceeeccCCCCCcccccCCCCccccceeecccccccccCCEEEEECCCCCCch--HHHHHHHHHhhc
Confidence 9999999999888888999999999999999999999999999999999999998886 6888 46 667777753
Q ss_pred cCCCCEEEEEeeeccccccchhccc
Q psy5597 179 SEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 179 s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
..+.+||++||||.+|+.||++.
T Consensus 189 --~dv~~V~~~iGeR~~Ev~~~~~~ 211 (502)
T 2qe7_A 189 --QDVICIYVAIGQKQSTVAGVVET 211 (502)
T ss_dssp --CSEEEEEEEESCCHHHHHHHHHH
T ss_pred --CCcEEEEEECCCcchHHHHHHHH
Confidence 33578999999999999999863
No 9
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=99.97 E-value=4.9e-32 Score=253.29 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=145.4
Q ss_pred cceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccc
Q psy5597 28 ARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNG 103 (204)
Q Consensus 28 ~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~ 103 (204)
+-+.+.|+. .+.+||+|++.+ + ..+||++++ ...++++. .|+..| ++|.+||++++||||++|||||+|+
T Consensus 37 ~iv~v~gl~-~~~~ge~~~i~~--g--~~g~v~~l~~~~v~~~~~~~~~gi~~G-~~V~~tg~~~~vpvg~~lLGRVvd~ 110 (510)
T 2ck3_A 37 GIARVHGLR-NVQAEEMVEFSS--G--LKGMSLNLEPDNVGVVVFGNDKLIKEG-DIVKRTGAIVDVPVGEELLGRVVDA 110 (510)
T ss_dssp TEEEEEECT-TCBTTCEEEETT--S--CEEEEEEECSSCEEEEESSCGGGCCTT-CEEEECCCCCEEEESGGGTTCEECT
T ss_pred cEEEEeeCC-CCCCCCEEEECC--C--CeEEEEeccCCeEEEEEECCcccccCC-CEEEEeCCcceeecCccceeeEEcc
Confidence 337778876 799999999942 3 579999999 45566664 579999 8999999999999999999999999
Q ss_pred cceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhh-hhhhhcccc
Q psy5597 104 SGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEF-TGDILRTPV 178 (204)
Q Consensus 104 lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l-~~~~~~~~~ 178 (204)
+|+|||+++++...++||++.+||+|++|.++++||+||||+||+|+|...|++.+++ +||| ++ +.+++++..
T Consensus 111 lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT--~Lal~~I~~q~~ 188 (510)
T 2ck3_A 111 LGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKT--SIAIDTIINQKR 188 (510)
T ss_dssp TSCBCSSSCCCCCSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBTTCBCEEEESTTSSHH--HHHHHHHHHTHH
T ss_pred CCcCcCCCCCCCccceeecccCCCCcccccccCccccccceeeccccccccCCEEEEecCCCCCch--HHHHHHHHHHHh
Confidence 9999999999887888999999999999999999999999999999999999998886 6888 46 667777764
Q ss_pred c------CCCCEEEEEeeeccccccchhccc
Q psy5597 179 S------EDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 179 s------~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
. ...+.+||++||||.+|+.||++.
T Consensus 189 ~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~ 219 (510)
T 2ck3_A 189 FNDGTDEKKKLYCIYVAIGQKRSTVAQLVKR 219 (510)
T ss_dssp HHTSCCTTTCCEEEEEEESCCHHHHHHHHHH
T ss_pred hccccccCCCeEEEEEECCCCcHHHHHHHHH
Confidence 1 133689999999999999999863
No 10
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=99.97 E-value=4e-32 Score=253.84 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=145.0
Q ss_pred cceeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccc
Q psy5597 28 ARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNG 103 (204)
Q Consensus 28 ~~~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~ 103 (204)
+-+.+.|+. .+++||+|++. .++ ..|||++++ ...++++. .|+..| ++|.+||++++||||++|||||+|+
T Consensus 49 ~iv~v~gl~-~~~~gEl~~i~-~~g--~~g~v~~l~~~~v~~~~~~~~~gi~~G-~~V~~tg~~~~vpvG~~lLGRVvd~ 123 (515)
T 2r9v_A 49 GIARAYGLN-KVMVSELVEFV-ETG--VKGVAFNLEEDNVGIIILGEYKDIKEG-HTVRRLKRIIEVPVGEELLGRVVNP 123 (515)
T ss_dssp TEEEEEECT-TCCTTEEEEET-TTC--CEEEEEECCTTCEEEEEESCCTTCCTT-CEEEEEEEECEEEESGGGTTCEECT
T ss_pred cEEEEecCC-CCCCCCEEEEe-cCC--eEEEEEEecCCeEEEEEecCcccccCC-CEEEEeCCcceeecCccceeeEEcC
Confidence 336777876 79999999995 223 569999999 45566664 679999 8999999999999999999999999
Q ss_pred cceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhh-hhhhhcccc
Q psy5597 104 SGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEF-TGDILRTPV 178 (204)
Q Consensus 104 lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l-~~~~~~~~~ 178 (204)
+|+|||+++++...++||++.+||+|++|.++++||+||||+||+|+|...|++.|++ +||| ++ +.+++++..
T Consensus 124 lG~PiDg~g~i~~~~~~pi~~~~P~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT--~Lal~~I~~~~~ 201 (515)
T 2r9v_A 124 LGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKT--AIAIDTIINQKG 201 (515)
T ss_dssp TSCBCSSSCCCCCSEEEESCCCCCCGGGBCCCCSEECCSCHHHHHHSCEETTCBEEEEEETTSSHH--HHHHHHHHTTTT
T ss_pred CCCCcCCCCCCCccceeecccCCCCcccccCCCcchhcCccccccccccccCCEEEEEcCCCCCcc--HHHHHHHHHhhc
Confidence 9999999999888888999999999999999999999999999999999999999996 6898 46 667777763
Q ss_pred cCCCCEEEEEeeeccccccchhccc
Q psy5597 179 SEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 179 s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
..+.+||++||||.+|+.||++.
T Consensus 202 --~dv~~V~~~IGeR~~Ev~e~~~~ 224 (515)
T 2r9v_A 202 --QGVYCIYVAIGQKKSAIARIIDK 224 (515)
T ss_dssp --TTEEEEEEEESCCHHHHHHHHHH
T ss_pred --CCcEEEEEEcCCCcHHHHHHHHH
Confidence 33578999999999999999863
No 11
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=99.96 E-value=9.2e-30 Score=236.43 Aligned_cols=170 Identities=22% Similarity=0.195 Sum_probs=144.8
Q ss_pred eeeeccc-cccCccCEEEEEecC--CC----CeEEEEee-ec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccc
Q psy5597 30 FFKQDFE-ENGSMENVCLFLNLA--ND----PTIERIIT-FQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDML 97 (204)
Q Consensus 30 ~~v~~~~-~~~~iGd~c~I~~~~--~~----~~~aEVVg-~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lL 97 (204)
+.+++.+ ..+++|+.|.|...+ +. ...+||++ ++ ...++++. .|+..| ++|.+||++++||||++||
T Consensus 14 v~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G-~~V~~tg~~~~vpvg~~ll 92 (473)
T 1sky_E 14 VDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRG-MEVIDTGAPISVPVGQVTL 92 (473)
T ss_dssp EEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTT-CEEEEEEEECEEECSGGGT
T ss_pred EEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCC-CEEEEcCCcceeeccccce
Confidence 3444453 478999999997522 33 47899998 66 45666764 689999 8999999999999999999
Q ss_pred cccccccceeecCCCCCCCC-cceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhh
Q psy5597 98 GRVFNGSGKPIDKGPPILAE-DYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGD 172 (204)
Q Consensus 98 GRViD~lG~PiDg~~~~~~~-~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~ 172 (204)
|||+|++|+|||+++++... ++||++.+||+|++|+++++||+||||+||.|.|...+++.+++ .||| +++.+
T Consensus 93 Grv~d~lG~piD~~g~i~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq~~~i~G~sGvGKT--tL~~~ 170 (473)
T 1sky_E 93 GRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKT--VLIQE 170 (473)
T ss_dssp TCEECTTSCBCSSSCCCCTTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTCEEEEECCSSSCHH--HHHHH
T ss_pred eeEEeecCCccCcccccCCCceeecccccCcchhhhcccCccccccchHHHHHhhhccCCEEEEECCCCCCcc--HHHHH
Confidence 99999999999999888776 78999999999999999999999999999999998888887775 5888 68898
Q ss_pred hhcccccCCCCEEEEEeeeccccccchhcc
Q psy5597 173 ILRTPVSEDMLGRVFNGSGKPIDKAVRLLR 202 (204)
Q Consensus 173 ~~~~~~s~~~~~~Vf~giGer~~e~~el~~ 202 (204)
++.+.......++||+++|+|.+|+.|||+
T Consensus 171 l~~~~~~~~~~i~V~~~iGerttev~el~~ 200 (473)
T 1sky_E 171 LIHNIAQEHGGISVFAGVGERTREGNDLYH 200 (473)
T ss_dssp HHHHHHHHTCCCEEEEEESSCHHHHHHHHH
T ss_pred HHhhhhhccCcEEEEeeeccCchHHHHHHH
Confidence 888765445568899999999999999986
No 12
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=99.96 E-value=1.3e-29 Score=239.59 Aligned_cols=163 Identities=18% Similarity=0.293 Sum_probs=134.8
Q ss_pred eeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccc
Q psy5597 30 FFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSG 105 (204)
Q Consensus 30 ~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG 105 (204)
+.++++. .+++||+|+|. +..+.|||++++ .+.++++. .|+.+| ++|++||++++|++|++|||||+|++|
T Consensus 21 v~v~g~~-~~~~gE~v~v~---~~~l~gEVi~~~~d~a~i~v~e~t~Gl~~G-~~V~~tG~~lsV~vG~~lLGrV~DglG 95 (600)
T 3vr4_A 21 VMAENMS-EASIQDMCLVG---DLGVIGEIIEMRQDVASIQVYEETSGIGPG-EPVRSTGEALSVELGPGIISQMFDGIQ 95 (600)
T ss_dssp EEEESCT-TSCTTCEEEET---TTTEEEEEEEEETTEEEEEESSCCTTCCTT-CEEEECSSSSEEEESTTCTTCEECTTC
T ss_pred EEEEcCC-CCccCCEEEEC---CCcEEEEEEEEcCCcEEEEEccCCCCCCCC-CEEEECCCCCEEEeCHHHHhhhhCcCC
Confidence 5566654 59999999993 346899999998 56677775 689999 799999999999999999999999999
Q ss_pred eeecCC----C-----------CCCCCcc---------------------------------------------------
Q psy5597 106 KPIDKG----P-----------PILAEDY--------------------------------------------------- 119 (204)
Q Consensus 106 ~PiDg~----~-----------~~~~~~~--------------------------------------------------- 119 (204)
+|||+. + ++..++.
T Consensus 96 rPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i~~g~~~ 175 (600)
T 3vr4_A 96 RPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEATIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKIESGSFT 175 (600)
T ss_dssp CBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEECSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEECCEEEC
T ss_pred CcccccccccCccccccCCcCCCCCcccccccCcccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEecCCcce
Confidence 999986 3 2222222
Q ss_pred ----------------------eeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhh
Q psy5597 120 ----------------------LDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDI 173 (204)
Q Consensus 120 ----------------------~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~ 173 (204)
||++. ||+.++|.++++||+||||+||+|+|...|++.||+ +||| +++.++
T Consensus 176 v~~~v~~i~~~~g~~~i~~~~~wpv~~-~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~GKT--~L~~~i 252 (600)
T 3vr4_A 176 IDDPICVIETEQGLKELTMMQKWPVRR-GRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKT--VVQHQI 252 (600)
T ss_dssp TTSCCEEEEETTEEEEECSCEEEETTS-CCCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTSCHH--HHHHHH
T ss_pred eceeEEEEeccCCcccccccccccccC-CCchhhccCCCceecccchhhhccCCccCCCEEeeecCCCccHH--HHHHHH
Confidence 33332 456678999999999999999999999999999997 6899 588899
Q ss_pred hcccccCCCCEEEEEeeeccccccchhccc
Q psy5597 174 LRTPVSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 174 ~~~~~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
+++. +.+++||++||||.+|+.||++.
T Consensus 253 a~~~---~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 253 AKWS---DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHS---SCSEEEEEEEEECHHHHHHHHHH
T ss_pred Hhcc---CCCEEEEEEecccHHHHHHHHHH
Confidence 8886 34599999999999999999864
No 13
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=99.95 E-value=3.7e-29 Score=235.70 Aligned_cols=163 Identities=16% Similarity=0.240 Sum_probs=134.4
Q ss_pred eeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccc
Q psy5597 30 FFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSG 105 (204)
Q Consensus 30 ~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG 105 (204)
+.++++. .+++||+|+|. +..+.|||++++ .+.++++. .|+.+| ++|++||++++|++|++|||||+|++|
T Consensus 14 v~v~g~~-~~~~gE~v~v~---~~~l~gEVi~~~~d~~~i~v~e~t~Gl~~G-~~V~~tg~~l~V~vG~~lLGrV~DglG 88 (578)
T 3gqb_A 14 VIAKGML-GARMYDISKVG---EEGLVGEIIRLDGDTAFVQVYEDTSGLKVG-EPVVSTGLPLAVELGPGMLNGIYDGIQ 88 (578)
T ss_dssp EEEESCT-TCCTTEEEEET---TTTEEEEEEEEETTEEEEEESSCCTTCCTT-CEEEEEEEESEEEESTTCTTCEECTTS
T ss_pred EEEEcCC-CCccCCEEEEC---CCcEEEEEEEEcCCcEEEEEcCCCCCCCCC-CEEEECCCCCEEEeCHHHhhhhhCcCC
Confidence 5566664 59999999993 346899999998 56677774 689999 799999999999999999999999999
Q ss_pred eeecCC----C----------CCCCCcc----------------------------------------------------
Q psy5597 106 KPIDKG----P----------PILAEDY---------------------------------------------------- 119 (204)
Q Consensus 106 ~PiDg~----~----------~~~~~~~---------------------------------------------------- 119 (204)
+|||+. + ++..++.
T Consensus 89 ~PlD~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i~~~G~~~v 168 (578)
T 3gqb_A 89 RPLERIREKTGIYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVKPAGEYTV 168 (578)
T ss_dssp CBHHHHHHHHCSBCCTTCCCCSSCSSSCEEEEECCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEECCSEEECT
T ss_pred CcccccccccCccccccccCCCcCcccccccccccccCccccccceeeeecccccceecccCCCcCceeEEeccCCcccc
Confidence 999986 2 1222222
Q ss_pred ------------------eeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhccc
Q psy5597 120 ------------------LDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTP 177 (204)
Q Consensus 120 ------------------~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~ 177 (204)
||++.+ ++.++|.++++||+||||+||+|+|...|++.||+ +||| +++++++++.
T Consensus 169 ~~~i~~~~~g~~i~~~~~wPv~~~-~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT--~l~~~ia~~~ 245 (578)
T 3gqb_A 169 EEPVVVLEDGTELKMYHTWPVRRA-RPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKS--VTQQSLAKWS 245 (578)
T ss_dssp TSCSEEETTCCEECSCEEEETTSC-CCCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHH--HHHHHHHHHS
T ss_pred cceeEEeecCccccccccccccCC-CChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHH--HHHHHHHhcc
Confidence 233322 45778999999999999999999999999999997 6899 5888998886
Q ss_pred ccCCCCEEEEEeeeccccccchhccc
Q psy5597 178 VSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 178 ~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
+.+++||++||||.+|+.||++.
T Consensus 246 ---~~~v~V~~~iGER~~Ev~e~~~~ 268 (578)
T 3gqb_A 246 ---NADVVVYVGSGERGNEMTDVLVE 268 (578)
T ss_dssp ---SCSEEEEEEEEECHHHHHHHHTT
T ss_pred ---CCCEEEEEEecccHHHHHHHHHH
Confidence 34599999999999999999864
No 14
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=99.95 E-value=1.6e-29 Score=238.35 Aligned_cols=163 Identities=17% Similarity=0.212 Sum_probs=101.9
Q ss_pred eeeeccccccCccCEEEEEecCCCCeEEEEeeec--cceEEEcC--CcccCCccEEEecCCeeEEeCCcccccccccccc
Q psy5597 30 FFKQDFEENGSMENVCLFLNLANDPTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSG 105 (204)
Q Consensus 30 ~~v~~~~~~~~iGd~c~I~~~~~~~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~~~~Vpvg~~lLGRViD~lG 105 (204)
+.++++. .+++||+|+|.. ..+.|||++|+ .+.++++. .|+..| ++|.+||++++|++|++|||||+|++|
T Consensus 15 v~~~g~~-~~~~gElv~v~~---~~l~geVi~l~~d~~~i~v~e~t~Gi~~G-~~V~~tg~~lsV~vG~gLLGrV~Dglg 89 (588)
T 3mfy_A 15 VVADGMK-GAKMYEVVRVGE---LGLIGEIIRLEGDKAVIQVYEETAGVRPG-EPVVGTGASLSVELGPRLLTSIYDGIQ 89 (588)
T ss_dssp --------------------------------------------------CC-CCCSSSSSCCEEEESTTCTTCEEETTC
T ss_pred EEEEcCC-CCccCCEEEEcC---CceEEEEEEecCCeEEEEEccCCCCCCCC-CEEEEcCCCCEEEeCHHHHhhccCCCC
Confidence 4555553 489999999942 35899999998 56677764 579999 799999999999999999999999999
Q ss_pred eeecCCCC--------------CCCC------------------------------------------------------
Q psy5597 106 KPIDKGPP--------------ILAE------------------------------------------------------ 117 (204)
Q Consensus 106 ~PiDg~~~--------------~~~~------------------------------------------------------ 117 (204)
+|||+.++ +..+
T Consensus 90 rPLd~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i~~~g~~~ 169 (588)
T 3mfy_A 90 RPLEVIREKTGDFIARGVTAPALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYT 169 (588)
T ss_dssp CSSSSCCCCCSSSCCCCCCCCSSCSSCCEEEEECCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEECCSEEEC
T ss_pred CcccCcccccccccccccccCccccccccccccccccCcccccCceEEEEecccceeeeeecCCCCCceEEEeccCCccc
Confidence 99998743 1111
Q ss_pred ---------------------cceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhhhh
Q psy5597 118 ---------------------DYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGD 172 (204)
Q Consensus 118 ---------------------~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~ 172 (204)
++||++. |+++++|.++++||+||||+||+|+|...|++.||+ +||| +++++
T Consensus 170 v~~~i~~i~~~~g~~~~i~~~~~wpv~~-~~p~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~g~GKT--~L~~~ 246 (588)
T 3mfy_A 170 IEEVIAKVKTPSGEIKELKMYQRWPVRV-KRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGKT--VTQHQ 246 (588)
T ss_dssp TTSEEEEEECTTCCEEEEESCEEEETTS-CCCCSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCCSHHHH--HHHHH
T ss_pred ccceEEEEecCCCccccccccccccccC-CCchhhhccCCcccccCcchhhccCCcccCCeEEeecCCCCCHH--HHHHH
Confidence 1234443 345678999999999999999999999999999996 5898 58888
Q ss_pred hhcccccCCCCEEEEEeeeccccccchhccc
Q psy5597 173 ILRTPVSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 173 ~~~~~~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
++++. +..++||++||||.+|+.||++.
T Consensus 247 ia~~~---~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 247 LAKWS---DAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHS---SCSEEEEEECCSSSSHHHHHHHH
T ss_pred HHhcc---CCCEEEEEEecccHHHHHHHHHH
Confidence 88875 34599999999999999999864
No 15
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.87 E-value=3.3e-22 Score=183.85 Aligned_cols=165 Identities=18% Similarity=0.237 Sum_probs=137.7
Q ss_pred ceeeeccccccCccCEEEEEecCCC---CeEEEEeeec--cceEEEcC--CcccCCccEEEecCC-------eeEEeCCc
Q psy5597 29 RFFKQDFEENGSMENVCLFLNLAND---PTIERIITFQ--AKYFSIYN--DGNNRGSFICEFTGD-------ILRTPVSE 94 (204)
Q Consensus 29 ~~~v~~~~~~~~iGd~c~I~~~~~~---~~~aEVVg~~--~~~ll~~~--~gi~~Gg~~V~~tg~-------~~~Vpvg~ 94 (204)
-+.++++ .+++||+|+|...++. .+.|||++|+ .+.++++. .|+.+| +.|.+|++ ++++++|+
T Consensus 20 ~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~gl~~g-~~v~~~~~~~~~~~~~~~v~~g~ 96 (438)
T 2dpy_A 20 VLEATGL--QLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILPG-ARVYARNGHGDGLQSGKQLPLGP 96 (438)
T ss_dssp SEEEESC--CCCSSCEEEEEECSTTSCEEEEEEEEECCTTCEEEEESSCCTTCCTT-EEEEEC----------CEEECSG
T ss_pred EEEEEeC--CCCCCCEEEEecCCCCccccEEEEEEEEcCCEEEEEEccCCCCCCCC-CEEEECCCccccccccEEEEcch
Confidence 3667777 8999999999864444 5889999998 56667764 679999 89999999 99999999
Q ss_pred ccccccccccceeecCCCCCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----CCceehhhh
Q psy5597 95 DMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFT 170 (204)
Q Consensus 95 ~lLGRViD~lG~PiDg~~~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~ 170 (204)
++||||+|++|+|+|+.+++...++||++.++|++++|+.+++++.||+++||.+++.-.|++.||. .||| +|+
T Consensus 97 ~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKS--TLl 174 (438)
T 2dpy_A 97 ALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKS--VLL 174 (438)
T ss_dssp GGTTEEECTTCCBSSSSCCCCCSCEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHH--HHH
T ss_pred hhhhhhhhccCCccCCCCCccccccccccCCCCCceEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHH--HHH
Confidence 9999999999999999888877778999999999999999999999999999999987777777774 5888 798
Q ss_pred hhhhcccccCCCCEEEEEeeeccccccchhc
Q psy5597 171 GDILRTPVSEDMLGRVFNGSGKPIDKAVRLL 201 (204)
Q Consensus 171 ~~~~~~~~s~~~~~~Vf~giGer~~e~~el~ 201 (204)
..++++... ...++..+|+|.+++.+++
T Consensus 175 ~~Iag~~~~---~~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 175 GMMARYTRA---DVIVVGLIGERGREVKDFI 202 (438)
T ss_dssp HHHHHHSCC---SEEEEEEESCCHHHHHHHH
T ss_pred HHHhcccCC---CeEEEEEeceecHHHHHHH
Confidence 888887533 3568888999988887764
No 16
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.72 E-value=1.6e-18 Score=155.00 Aligned_cols=112 Identities=20% Similarity=0.253 Sum_probs=98.3
Q ss_pred eeEEeCCcccccccccccceeecCCC-CCCCCcceeecCCCCCCccCCCCCcccccceeeeeeeeeeeccCeeccc----
Q psy5597 87 ILRTPVSEDMLGRVFNGSGKPIDKGP-PILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKILLQVFEGTSGID---- 161 (204)
Q Consensus 87 ~~~Vpvg~~lLGRViD~lG~PiDg~~-~~~~~~~~pi~~~pp~p~~R~~i~epL~TGIraID~llp~v~~gt~Gl~---- 161 (204)
+++||||++|||||+|++|+|||+++ ++...++||++.+||++++|+.+++++.||+++||.++|.-.|+..||.
T Consensus 2 ~~~~~vg~~~lGrv~~~~g~p~d~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nG 81 (347)
T 2obl_A 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSG 81 (347)
T ss_dssp CCEEEECGGGTTCEECTTSCBCSCCSSCCCCCEEEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTT
T ss_pred CceeecCccccCCEECCCCCcCCCCCCCCCCCCcccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCC
Confidence 67999999999999999999999998 8877778999999999999999999999999999999998888888884
Q ss_pred CCceehhhhhhhhcccccCCCCEEEEEeeeccccccchhccc
Q psy5597 162 AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 162 ~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el~~~ 203 (204)
.||| +++.+++.+...+ ..++..+|++.+++.+++.+
T Consensus 82 aGKT--TLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~ 118 (347)
T 2obl_A 82 VGKS--TLLGMICNGASAD---IIVLALIGERGREVNEFLAL 118 (347)
T ss_dssp SSHH--HHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTT
T ss_pred CCHH--HHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHh
Confidence 5888 7888888885333 66888999999888777543
No 17
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=99.28 E-value=3.6e-13 Score=123.06 Aligned_cols=122 Identities=13% Similarity=-0.000 Sum_probs=85.5
Q ss_pred CcccCCccEEEecCCeeEEeCCc--ccccccccccceeecCCCCCCCCcceeecC-CCCCCccCCCCC-cccccceeeee
Q psy5597 72 DGNNRGSFICEFTGDILRTPVSE--DMLGRVFNGSGKPIDKGPPILAEDYLDIEG-QPINPYSRTYPQ-EMIQTGISAID 147 (204)
Q Consensus 72 ~gi~~Gg~~V~~tg~~~~Vpvg~--~lLGRViD~lG~PiDg~~~~~~~~~~pi~~-~pp~p~~R~~i~-epL~TGIraID 147 (204)
+++..| +.|...-++.+- ++ .-|+||-+..|++.+ ....+...+. .|++|++|.+++ +|++||+|+||
T Consensus 96 ~~lr~g-d~v~g~~r~~~~--~e~~~~l~~v~~vng~~p~-----~~~~r~~fe~l~Pi~P~~R~~le~e~~~tGiraID 167 (427)
T 3l0o_A 96 FNLNTG-DIISGVIRKPKE--GEKYFAMIKIEAINYRPVE-----AVNDRVNFDNLTPDYPRERFILETDPKIYSTRLID 167 (427)
T ss_dssp TTCCTT-CEEEEEEECCCS--SSCSEEEEEEEEETTEEC---------CCCCGGGSCEECCCSBCCCCCSTTCHHHHHHH
T ss_pred cCCCCC-CEEEEEEeCCCC--CcccccceEEEecCCCChH-----HhccccccccCCCCCchhhccccccchhccchhhh
Confidence 467778 566544332211 11 134566655655543 2222233333 567999999999 99999999999
Q ss_pred eeeeeeccCeeccc----CCceehhhhhhhhcccccC-CCCEEEEEeeeccccccchhccc
Q psy5597 148 KILLQVFEGTSGID----AKNTVCEFTGDILRTPVSE-DMLGRVFNGSGKPIDKAVRLLRY 203 (204)
Q Consensus 148 ~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~-~~~~~Vf~giGer~~e~~el~~~ 203 (204)
+|+|...|++.+++ +||| +++.+++++.... ..+.+||++||||.+|+.||++.
T Consensus 168 ~l~PigrGQR~lIfg~~g~GKT--~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~ 226 (427)
T 3l0o_A 168 LFAPIGKGQRGMIVAPPKAGKT--TILKEIANGIAENHPDTIRIILLIDERPEEVTDIRES 226 (427)
T ss_dssp HHSCCBTTCEEEEEECTTCCHH--HHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSS
T ss_pred hcccccCCceEEEecCCCCChh--HHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHH
Confidence 99999999988886 6898 5888888875432 33468999999999999999874
No 18
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.68 E-value=1.1e-09 Score=100.04 Aligned_cols=77 Identities=12% Similarity=-0.033 Sum_probs=62.2
Q ss_pred CCCCCccCCCCC----cccccceeeeeeeeeeeccCeeccc----CCceehhhhhhhhcccccC-CCCEEEEEeeecccc
Q psy5597 125 QPINPYSRTYPQ----EMIQTGISAIDKILLQVFEGTSGID----AKNTVCEFTGDILRTPVSE-DMLGRVFNGSGKPID 195 (204)
Q Consensus 125 ~pp~p~~R~~i~----epL~TGIraID~llp~v~~gt~Gl~----~~ktv~~l~~~~~~~~~s~-~~~~~Vf~giGer~~ 195 (204)
.|.+|.+|..++ +|++||||+||.++|...|++.++. .||| +++.+++++.... ..+.+||++||||.+
T Consensus 140 tp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKT--tLl~~Iar~i~~~~~~v~~I~~lIGER~~ 217 (422)
T 3ice_A 140 TPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKT--MLLQNIAQSIAYNHPDCVLMVLLIDERPE 217 (422)
T ss_dssp CEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHH--HHHHHHHHHHHHHCTTSEEEEEEESSCHH
T ss_pred cccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChh--HHHHHHHHHHhhcCCCeeEEEEEecCChH
Confidence 445667788887 8999999999999998888887775 5888 6888888775432 234688999999999
Q ss_pred ccchhccc
Q psy5597 196 KAVRLLRY 203 (204)
Q Consensus 196 e~~el~~~ 203 (204)
|+.||++.
T Consensus 218 Ev~~~~~~ 225 (422)
T 3ice_A 218 EVTEMQRL 225 (422)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99999863
No 19
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=84.41 E-value=0.31 Score=45.05 Aligned_cols=53 Identities=45% Similarity=0.750 Sum_probs=44.2
Q ss_pred eeeeeeeccCeeccc-CCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGID-AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~-~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|....++|+.+.|+. .+.. |.++++.++-..+++.+++||++.|++.|+...+
T Consensus 53 ~~~~~~~~~~~~gl~~~g~~-V~~tg~~~~vpvg~~lLGRV~d~lG~PiD~~~~i 106 (464)
T 3gqb_B 53 EYAVIQVFEETTGLDLATTS-VSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPI 106 (464)
T ss_dssp SEEEEEESSCCTTCCSSSCE-EEEEESSCEEEECSTTTTEEEETTCCBCSSSCCC
T ss_pred CeEEEEEecCccccccCCCE-EEECCCCcEEEeChHhcCCEeccCCcccCCCccc
Confidence 444568999999998 5655 4788888888899999999999999999988765
No 20
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=82.68 E-value=0.17 Score=48.04 Aligned_cols=52 Identities=29% Similarity=0.521 Sum_probs=44.3
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccch
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVR 199 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~e 199 (204)
|....|+|+.|.||..+..| +.+++.+.-.+++..+++||+++|+|.|+..+
T Consensus 45 d~~~i~v~e~t~Gl~~G~~V-~~tg~~l~V~vG~~lLGrV~DglG~PlD~~~~ 96 (578)
T 3gqb_A 45 DTAFVQVYEDTSGLKVGEPV-VSTGLPLAVELGPGMLNGIYDGIQRPLERIRE 96 (578)
T ss_dssp TEEEEEESSCCTTCCTTCEE-EEEEEESEEEESTTCTTCEECTTSCBHHHHHH
T ss_pred CcEEEEEcCCCCCCCCCCEE-EECCCCCEEEeCHHHhhhhhCcCCCccccccc
Confidence 44456999999999988775 78888888888999999999999999998743
No 21
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=82.67 E-value=0.24 Score=46.13 Aligned_cols=52 Identities=31% Similarity=0.467 Sum_probs=44.0
Q ss_pred eeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 148 KILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 148 ~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
....++|+++.||..+..| ..++..++-..+++.+++||+++|++.|+..++
T Consensus 73 ~v~~~~~~~t~Gl~~G~~V-~~tg~~~~vpvG~~lLGRV~d~lG~PiD~~~~i 124 (498)
T 1fx0_B 73 RVRAVAMSATDGLTRGMEV-IDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPV 124 (498)
T ss_dssp CEEEEESSCCTTCCTTCEE-EECSSSCEEEESSTTTTCEECTTSCBCSSSSCC
T ss_pred eEEEEEecCccCCCCCCEE-EecCCcceEecCccceeeEEcccccCCCCcCCc
Confidence 3445789999999987664 678888888889999999999999999997665
No 22
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=82.12 E-value=0.2 Score=46.31 Aligned_cols=53 Identities=49% Similarity=0.877 Sum_probs=34.4
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|....++|+.+.||..+..| ..++..++-..+++.+++||++.|++.|+..++
T Consensus 59 ~~v~~~~~~~t~gl~~G~~V-~~tg~~l~vpvg~~lLGRV~d~lG~PiDg~~~i 111 (469)
T 2c61_A 59 DIVVVQVFEGTGGLDKDCGV-IFTGETLKLPASVDLLGRILSGSGEPRDGGPRI 111 (469)
T ss_dssp SEEEEEEC--------------CEEEBCEEEECGGGTTCEEETTSCBSSSCCCC
T ss_pred CEEEEEEeCCCcCCCCCCEE-EEcCCCcEEEccccceeeEEcccCCCCCCCCCC
Confidence 56667899999999987664 688888888889999999999999999987664
No 23
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=81.23 E-value=0.25 Score=46.96 Aligned_cols=51 Identities=31% Similarity=0.580 Sum_probs=44.0
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccc
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAV 198 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~ 198 (204)
|....|+|+.|.||..+..| +++++.+.-.+++..+++||+++|+|.|+..
T Consensus 52 d~a~i~v~e~t~Gl~~G~~V-~~tG~~lsV~vG~~lLGrV~DglGrPlD~~~ 102 (600)
T 3vr4_A 52 DVASIQVYEETSGIGPGEPV-RSTGEALSVELGPGIISQMFDGIQRPLDTFM 102 (600)
T ss_dssp TEEEEEESSCCTTCCTTCEE-EECSSSSEEEESTTCTTCEECTTCCBHHHHH
T ss_pred CcEEEEEccCCCCCCCCCEE-EECCCCCEEEeCHHHHhhhhCcCCCcccccc
Confidence 44557999999999988775 7888888888899999999999999999873
No 24
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=81.04 E-value=0.38 Score=44.49 Aligned_cols=53 Identities=49% Similarity=0.878 Sum_probs=44.2
Q ss_pred eeeeeeeccCeeccc-CCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGID-AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~-~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|....++|+.+.||. .+.. |.++++.++-..+++.+++||++.|++.|+..++
T Consensus 57 ~~~~~~~~~~~~gl~~~g~~-V~~tg~~~~vpvg~~lLGRV~d~lG~PiD~~~~i 110 (465)
T 3vr4_D 57 DKAMVQIFEGTSGINLKNSS-VRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEI 110 (465)
T ss_dssp SEEEEEETTCCTTCCTTTCE-EEECSSCCEEEECGGGTTEEEETTSCBCSCCCCC
T ss_pred CeEEEEEecCccccccCCCE-EEECCCcceeecchhhccceeccCCcccCCCCCC
Confidence 445568999999998 5655 4788888888889999999999999999988765
No 25
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=79.10 E-value=0.42 Score=44.66 Aligned_cols=50 Identities=36% Similarity=0.468 Sum_probs=42.8
Q ss_pred eeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 150 LLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 150 lp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
..++|+.+.||..+.+| ..++++++-..+++.+++||++.|+|.|+...+
T Consensus 72 ~~~~~~~~~gi~~G~~V-~~tg~~~~VpvG~~lLGRV~d~lG~PiDg~g~i 121 (513)
T 3oaa_A 72 GAVVMGPYADLAEGMKV-KCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPL 121 (513)
T ss_dssp EEEESSCCSSCCTTCEE-ECCSCSSEEECSGGGTTCEEETTSCBTTCSCSC
T ss_pred EEEEeCCccCCCCCCEE-EEcCCCCeEeeCHHHhccchhhcCcCccCCCCC
Confidence 35889999999987765 688888888889999999999999999987654
No 26
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=76.27 E-value=0.47 Score=45.02 Aligned_cols=52 Identities=27% Similarity=0.503 Sum_probs=32.0
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccch
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVR 199 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~e 199 (204)
|....|+|+.+.||..+..| ..++++..-.+.+..+++||+|+|+|.|+..+
T Consensus 46 d~~~i~v~e~t~Gi~~G~~V-~~tg~~lsV~vG~gLLGrV~DglgrPLd~~~~ 97 (588)
T 3mfy_A 46 DKAVIQVYEETAGVRPGEPV-VGTGASLSVELGPRLLTSIYDGIQRPLEVIRE 97 (588)
T ss_dssp ---------------CCCCC-SSSSSCCEEEESTTCTTCEEETTCCSSSSCCC
T ss_pred CeEEEEEccCCCCCCCCCEE-EEcCCCCEEEeCHHHHhhccCCCCCcccCccc
Confidence 44556899999999988765 68888888888999999999999999998754
No 27
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=75.62 E-value=0.51 Score=44.05 Aligned_cols=53 Identities=34% Similarity=0.475 Sum_probs=44.4
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|....++|+.+.||..+.+| ..++..++-..+++.+++||++.|++.|+..++
T Consensus 70 ~~v~~~~~~~~~gi~~G~~V-~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i 122 (507)
T 1fx0_A 70 NNVGVVLMGDGLMIQEGSSV-KATGRIAQIPVSEAYLGRVINALAKPIDGRGEI 122 (507)
T ss_dssp SEEEEEECSCGGGCCTTCEE-ECCCCCCEEEESSSCSSCCCCSSSCCSSSSCCC
T ss_pred CeEEEEEecCccCCcCCCEE-EEeCCcceeecCccceeEEEccCCcCCCCCCCC
Confidence 33445899999999988775 678888888889999999999999999987665
No 28
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=75.08 E-value=0.5 Score=44.03 Aligned_cols=53 Identities=32% Similarity=0.523 Sum_probs=44.2
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|....++|+.+.||..+.+| ..++..++-..+++.+++||++.|++.|+..++
T Consensus 69 ~~v~~~~~~~~~gi~~G~~V-~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i 121 (502)
T 2qe7_A 69 DNVGVVILGPYTEIREGTQV-KRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPI 121 (502)
T ss_dssp TEEEEEECSCCSSCCTTCEE-EEEEEESEEECSGGGTTCEECTTCCBSSCSCCC
T ss_pred CeEEEEEecCccCCcCCCEE-EEeCCcceEEcccccceEEEccCCCCCCCCCCC
Confidence 33445899999999988775 678888888889999999999999999987654
No 29
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=74.38 E-value=0.56 Score=43.51 Aligned_cols=51 Identities=31% Similarity=0.525 Sum_probs=43.3
Q ss_pred eeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 149 ILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 149 llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
...++|+.+.||..+..| ..++..++-..+++.+++||++.|++.|+..++
T Consensus 62 v~~~~~~~t~Gl~~G~~V-~~tg~~~~vpvG~~lLGRV~d~lG~PiDg~~~~ 112 (482)
T 2ck3_D 62 VRTIAMDGTEGLVRGQKV-LDSGAPIRIPVGPETLGRIMNVIGEPIDERGPI 112 (482)
T ss_dssp EEEEESSCCTTCBTTCEE-EECSSSCEEECSGGGBTCEECTTSCBCSSSCSC
T ss_pred EEEEeccCccCCCCCCEE-EEcCCcceeeccccccCCEEcccCcCcCCcCCC
Confidence 335789999999988765 688888888889999999999999999987654
No 30
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=74.10 E-value=0.54 Score=43.91 Aligned_cols=51 Identities=33% Similarity=0.516 Sum_probs=43.3
Q ss_pred eeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 149 ILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 149 llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
...++|+.+.||..+.+| ..++..++-..+++.+++||++.|++.|+..++
T Consensus 71 v~~~~~~~~~gi~~G~~V-~~tg~~~~vpvg~~lLGRVvd~lG~PiDg~g~i 121 (510)
T 2ck3_A 71 VGVVVFGNDKLIKEGDIV-KRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI 121 (510)
T ss_dssp EEEEESSCGGGCCTTCEE-EECCCCCEEEESGGGTTCEECTTSCBCSSSCCC
T ss_pred EEEEEECCcccccCCCEE-EEeCCcceeecCccceeeEEccCCcCcCCCCCC
Confidence 345889999999988775 677888888889999999999999999987665
No 31
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=72.98 E-value=0.57 Score=43.33 Aligned_cols=53 Identities=34% Similarity=0.436 Sum_probs=44.3
Q ss_pred eeeeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
|....++|+.+.||..+..| ..++..++-..+++.+++||++.|++.|+...+
T Consensus 57 ~~v~~~~~~~t~gl~~G~~V-~~tg~~~~vpvg~~llGrv~d~lG~piD~~g~i 109 (473)
T 1sky_E 57 DTVRTIAMASTDGLIRGMEV-IDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDI 109 (473)
T ss_dssp TEEEEEESSCCTTCCTTCEE-EEEEEECEEECSGGGTTCEECTTSCBCSSSCCC
T ss_pred CcEEEEEecCccCCCCCCEE-EEcCCcceeeccccceeeEEeecCCccCccccc
Confidence 44556899999999988775 677888888888999999999999999986554
No 32
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=67.57 E-value=0.77 Score=42.95 Aligned_cols=51 Identities=29% Similarity=0.478 Sum_probs=43.1
Q ss_pred eeeeeccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeeccccccchh
Q psy5597 149 ILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRL 200 (204)
Q Consensus 149 llp~v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer~~e~~el 200 (204)
...++|+.+.||..+.+| ..++..++-..+++.+++||++.|++.|+..++
T Consensus 84 v~~~~~~~~~gi~~G~~V-~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i 134 (515)
T 2r9v_A 84 VGIIILGEYKDIKEGHTV-RRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPI 134 (515)
T ss_dssp EEEEEESCCTTCCTTCEE-EEEEEECEEEESGGGTTCEECTTSCBCSSSCCC
T ss_pred EEEEEecCcccccCCCEE-EEeCCcceeecCccceeeEEcCCCCCcCCCCCC
Confidence 345889999999988775 677888888888999999999999999987654
No 33
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=52.21 E-value=3.3 Score=37.41 Aligned_cols=52 Identities=29% Similarity=0.476 Sum_probs=39.4
Q ss_pred eeeeeeeccCeecccCCceehhhhhh-------hhcccccCCCCEEEEEeeeccccccch
Q psy5597 147 DKILLQVFEGTSGIDAKNTVCEFTGD-------ILRTPVSEDMLGRVFNGSGKPIDKAVR 199 (204)
Q Consensus 147 D~llp~v~~gt~Gl~~~ktv~~l~~~-------~~~~~~s~~~~~~Vf~giGer~~e~~e 199 (204)
|....++|+.+.|+..+..| ..++. .++....++.+++||++.|++.++..+
T Consensus 57 ~~~~~~~~~~~~gl~~g~~v-~~~~~~~~~~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~ 115 (438)
T 2dpy_A 57 QRLFLMPLEEVEGILPGARV-YARNGHGDGLQSGKQLPLGPALLGRVLDGGGKPLDGLPA 115 (438)
T ss_dssp TCEEEEESSCCTTCCTTEEE-EEC----------CEEECSGGGTTEEECTTCCBSSSSCC
T ss_pred CEEEEEEccCCCCCCCCCEE-EECCCccccccccEEEEcchhhhhhhhhccCCccCCCCC
Confidence 44446899999999987664 67777 777778889999999999999987543
No 34
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=50.38 E-value=1.5 Score=34.68 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=30.4
Q ss_pred cccccceeeeeeeee-e-------eccCeecccCCceehhhhhhhhcccccCCCCEEEEEeeecc
Q psy5597 137 EMIQTGISAIDKILL-Q-------VFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKP 193 (204)
Q Consensus 137 epL~TGIraID~llp-~-------v~~gt~Gl~~~ktv~~l~~~~~~~~~s~~~~~~Vf~giGer 193 (204)
+.+.||+..+|.++- + +..|..| .||| +|+.+++.+.+....-.++|...-++
T Consensus 10 ~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG--~GKT--~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTG--TGKT--TFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTT--SSHH--HHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CeecCCcHHHHHhhcCCCCCCeEEEEEeCCC--CCHH--HHHHHHHHHHHHhcCCCceeecccCC
Confidence 458999999999984 2 2222233 4677 57777766543222223445444433
No 35
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=28.52 E-value=9.5 Score=29.40 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=25.2
Q ss_pred cccccceeeeeeeee-eeccCe-ecc----cCCceehhhhhhhhccc
Q psy5597 137 EMIQTGISAIDKILL-QVFEGT-SGI----DAKNTVCEFTGDILRTP 177 (204)
Q Consensus 137 epL~TGIraID~llp-~v~~gt-~Gl----~~~ktv~~l~~~~~~~~ 177 (204)
+.+.||++++|.++. .+..|. .++ +.||| +|+.+++...
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKT--tl~~~l~~~~ 47 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKT--IFSLHFIAKG 47 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHH--HHHHHHHHHH
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHH--HHHHHHHHHH
Confidence 468999999999985 333332 222 25777 6777776553
No 36
>3p87_G Ribonuclease H2 subunit B; DNA binding, DNA replication, DNA repair, sliding clamp, PCN interacting peptide (PIP) motif, PIP-box motif, DNA clamp; 2.99A {Homo sapiens}
Probab=21.01 E-value=12 Score=20.31 Aligned_cols=10 Identities=30% Similarity=0.787 Sum_probs=8.5
Q ss_pred cceeeeeeee
Q psy5597 141 TGISAIDKIL 150 (204)
Q Consensus 141 TGIraID~ll 150 (204)
||+|+||.|+
T Consensus 3 sgMKSI~sFF 12 (23)
T 3p87_G 3 SGMKSIDTFF 12 (26)
T ss_pred ccchhHHHHh
Confidence 7899999876
No 37
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=20.80 E-value=19 Score=30.45 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=27.4
Q ss_pred CcccccceeeeeeeeeeeccCeecc-----cCCceehhhhhhhhcccccC
Q psy5597 136 QEMIQTGISAIDKILLQVFEGTSGI-----DAKNTVCEFTGDILRTPVSE 180 (204)
Q Consensus 136 ~epL~TGIraID~llp~v~~gt~Gl-----~~~ktv~~l~~~~~~~~~s~ 180 (204)
...+.||++.+|.++-++..|..-+ +.||| +|+.+++.+.+..
T Consensus 48 ~~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKT--tl~l~ia~~~a~~ 95 (315)
T 3bh0_A 48 ITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKT--AFALKQAKNMSDN 95 (315)
T ss_dssp CCSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHH--HHHHHHHHHHHTT
T ss_pred CCCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHH--HHHHHHHHHHHHc
Confidence 3578899999998874333332222 24677 6888887665443
Done!