RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5597
(204 letters)
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 126 bits (319), Expect = 1e-34
Identities = 37/76 (48%), Positives = 46/76 (60%)
Query: 72 DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYS 131
G + + D+ R VS++MLGR FNG GKPID PPI E L I G P+NP +
Sbjct: 64 TGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVA 123
Query: 132 RTYPQEMIQTGISAID 147
R P++ IQTGIS ID
Sbjct: 124 RRKPEQFIQTGISTID 139
Score = 88.6 bits (220), Expect = 7e-21
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
+ ++QVFE T+G+D T D+ R VS++MLGR FNG GKPID
Sbjct: 53 EYAVIQVFEETTGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDG 102
Score = 86.7 bits (215), Expect = 3e-20
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 2 PGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIIT 61
P S + E+ FA+VFAAMG+ +F Q+FE G++ LFLN A+DPTIERI+T
Sbjct: 175 PDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILT 234
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 124 bits (313), Expect = 8e-34
Identities = 35/70 (50%), Positives = 47/70 (67%)
Query: 81 CEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQ 140
FTG+ L+ P S D+LGR+ +GSG+P D GP I+ + LDI G +NPY+R P++ IQ
Sbjct: 78 VIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQ 137
Query: 141 TGISAIDKIL 150
TGIS ID
Sbjct: 138 TGISTIDGTN 147
Score = 86.7 bits (215), Expect = 3e-20
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 7 LDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIIT 61
+ SE FA+VFAAMG+ E A++F DFE+ G++E +FLNLA+DP +ERI+T
Sbjct: 178 VPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232
Score = 82.8 bits (205), Expect = 7e-19
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
D +++QVFEGT G+D K+ FTG+ L+ P S D+LGR+ +GSG+P D
Sbjct: 59 DIVVVQVFEGTGGLD-KDCGVIFTGETLKLPASVDLLGRILSGSGEPRDG 107
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 68.9 bits (169), Expect = 4e-14
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 82 EFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQT 141
+ + P+ +LGRV +G GKP+D P + + P NP RT + ++ T
Sbjct: 84 DGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDT 143
Query: 142 GISAIDKIL 150
G+ AI+ +L
Sbjct: 144 GVRAINALL 152
Score = 41.6 bits (98), Expect = 8e-05
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 147 DKILLQVFEGTSGI------DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
++ L E GI A+N + + P+ +LGRV +G GKP+D
Sbjct: 57 QRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVLDGGGKPLD 111
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 65.0 bits (159), Expect = 7e-13
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 88 LRTPVSEDMLGRVFNGSGKPID-KGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAI 146
+ V + +LGR+ +G G+P++ + +P +P R + G+ AI
Sbjct: 3 HKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAI 62
Query: 147 DKIL 150
D +L
Sbjct: 63 DGLL 66
Score = 36.9 bits (86), Expect = 0.003
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 174 LRTPVSEDMLGRVFNGSGKPID 195
+ V + +LGR+ +G G+P++
Sbjct: 3 HKIRVGDALLGRLIDGIGRPME 24
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 58.8 bits (143), Expect = 1e-10
Identities = 28/64 (43%), Positives = 34/64 (53%)
Query: 84 TGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGI 143
TG I+ PV E +LGRV N G+P+D PI +Y IE R E +QTGI
Sbjct: 91 TGRIMEVPVGEALLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGI 150
Query: 144 SAID 147
AID
Sbjct: 151 KAID 154
Score = 41.1 bits (97), Expect = 1e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 170 TGDILRTPVSEDMLGRVFNGSGKPID 195
TG I+ PV E +LGRV N G+P+D
Sbjct: 91 TGRIMEVPVGEALLGRVVNPLGQPLD 116
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 58.9 bits (143), Expect = 1e-10
Identities = 29/64 (45%), Positives = 33/64 (51%)
Query: 84 TGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGI 143
TG I + PVSE LGRV N KPID I A + IE SR E +QTG+
Sbjct: 92 TGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGL 151
Query: 144 SAID 147
AID
Sbjct: 152 IAID 155
Score = 41.1 bits (97), Expect = 1e-04
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 170 TGDILRTPVSEDMLGRVFNGSGKPID 195
TG I + PVSE LGRV N KPID
Sbjct: 92 TGRIAQIPVSEAYLGRVINALAKPID 117
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 58.1 bits (141), Expect = 2e-10
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 84 TGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGI 143
I+ PV E++LGRV N G+P+D PI A+++ IE + R +QTGI
Sbjct: 104 LKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQTGI 163
Query: 144 SAID 147
AID
Sbjct: 164 KAID 167
Score = 40.8 bits (96), Expect = 1e-04
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 170 TGDILRTPVSEDMLGRVFNGSGKPID 195
I+ PV E++LGRV N G+P+D
Sbjct: 104 LKRIIEVPVGEELLGRVVNPLGEPLD 129
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 58.1 bits (141), Expect = 2e-10
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 84 TGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGI 143
TG I+ PV E++LGRV + G ID PI ++ + + R +E +QTGI
Sbjct: 91 TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGI 150
Query: 144 SAID 147
A+D
Sbjct: 151 KAVD 154
Score = 41.1 bits (97), Expect = 1e-04
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 170 TGDILRTPVSEDMLGRVFNGSGKPID 195
TG I+ PV E++LGRV + G ID
Sbjct: 91 TGAIVDVPVGEELLGRVVDALGNAID 116
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 58.1 bits (141), Expect = 3e-10
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 84 TGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGI 143
TG IL PV +LGRV N G PID P+ + + +E R + +QTG
Sbjct: 91 TGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGY 150
Query: 144 SAID 147
A+D
Sbjct: 151 KAVD 154
Score = 41.1 bits (97), Expect = 1e-04
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 170 TGDILRTPVSEDMLGRVFNGSGKPID 195
TG IL PV +LGRV N G PID
Sbjct: 91 TGRILEVPVGRGLLGRVVNTLGAPID 116
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 51.5 bits (124), Expect = 4e-08
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 72 DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYS 131
+G RG +G +R PV + LGR+ N G+PID+ PI + + I +
Sbjct: 71 EGLVRGQ-KVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVE 129
Query: 132 RTYPQEMIQTGISAID 147
+ QE++ TGI +D
Sbjct: 130 MSVEQEILVTGIKVVD 145
Score = 34.9 bits (81), Expect = 0.013
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 170 TGDILRTPVSEDMLGRVFNGSGKPID 195
+G +R PV + LGR+ N G+PID
Sbjct: 82 SGAPIRIPVGPETLGRIMNVIGEPID 107
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 49.6 bits (119), Expect = 2e-07
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 72 DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYS 131
DG RG + + TG L PV LGR+FN G+P+D P+ I
Sbjct: 83 DGLTRGMEVID-TGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQ 141
Query: 132 RTYPQEMIQTGISAID 147
+ +TGI ++
Sbjct: 142 LDTKLSIFETGIKVVN 157
Score = 35.0 bits (81), Expect = 0.011
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 107 PIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQ-TGISAIDKILLQVFEG-TSGIDAKN 164
P K P I + L ++G+ E+ Q G + + + + +G T G++ +
Sbjct: 36 PPGKMPNIY--NALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVID 93
Query: 165 TVCEFTGDILRTPVSEDMLGRVFNGSGKPID 195
T G L PV LGR+FN G+P+D
Sbjct: 94 T-----GAPLSVPVGGPTLGRIFNVLGEPVD 119
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC
F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1
b.49.1.1 c.37.1.11
Length = 473
Score = 47.0 bits (112), Expect = 1e-06
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 16/84 (19%)
Query: 72 DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYS 131
DG RG + + TG + PV + LGRVFN G+PID I A D PI+
Sbjct: 68 DGLIRGMEVID-TGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPA----DARRDPIH--- 119
Query: 132 RTYP--------QEMIQTGISAID 147
R P E+++TGI +D
Sbjct: 120 RPAPKFEELATEVEILETGIKVVD 143
Score = 35.0 bits (81), Expect = 0.011
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 170 TGDILRTPVSEDMLGRVFNGSGKPID 195
TG + PV + LGRVFN G+PID
Sbjct: 79 TGAPISVPVGQVTLGRVFNVLGEPID 104
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 7e-06
Identities = 38/204 (18%), Positives = 61/204 (29%), Gaps = 70/204 (34%)
Query: 33 QDFEENG-----SM--------ENVCLFLNLAND--PTIERIITFQAKYFSIYNDGNNRG 77
+D EN M E V ++N N P +++ S+ N N
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV------EISLVNGAKN-- 376
Query: 78 SFICEFTGDILRTPVS----EDMLGRVFNGSGK-----PIDKGPPILAEDYLDIEGQPIN 128
+ +G P S L + SG P + + +L P+
Sbjct: 377 -LVV--SG----PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-----PVA 424
Query: 129 -PYSRTYPQEMIQTGISAIDKILLQVFEGTSGIDAKNTVCEFTGDILRTPV-----SEDM 182
P+ ++ A D I D F ++ PV D+
Sbjct: 425 SPFHSHL---LV----PASDLINK---------DLVKNNVSFNAKDIQIPVYDTFDGSDL 468
Query: 183 LGRVFNGSGKP--IDKAVRLLRYW 204
RV +GS +D +RL W
Sbjct: 469 --RVLSGSISERIVDCIIRLPVKW 490
Score = 37.0 bits (85), Expect = 0.004
Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 40/159 (25%)
Query: 62 FQAKY-FSIYN-DGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDY 119
F+ Y FSI + NN + F G+ + + E+ +F K I E
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKR-IRENYSAMIFETIVDGKLKTEKIFKE-- 1709
Query: 120 LDIEGQPINPYSRTY----PQEMI------QTGISAIDKILLQVFEGTSGIDAKNTVC-- 167
IN +S +Y + ++ Q ++ ++K + + I A T
Sbjct: 1710 -------INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 168 ---EFTGDILRTPVSEDMLGRVFNGSGKPIDKAVRLLRY 203
E+ L S L V I+ V ++ Y
Sbjct: 1763 SLGEYAA--L---AS---LADVM-----SIESLVEVVFY 1788
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 38.6 bits (90), Expect = 8e-04
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
DK ++QV+E T+G+ V TG L + +L +++G +P++
Sbjct: 46 DKAVIQVYEETAGVRPGEPV-VGTGASLSVELGPRLLTSIYDGIQRPLEV 94
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.005
Identities = 29/206 (14%), Positives = 65/206 (31%), Gaps = 61/206 (29%)
Query: 4 KSVLDDSEDNFAIVFAAMGV-NMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITF 62
K +L ED F F V +M + K++ + + + + +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH---------IIMSKDAVSGTLRL-- 67
Query: 63 QAKYFSIYNDGNNRGSFICEFTGDILR-------TPVSEDMLGRVFNGSGKPIDKGPPIL 115
F + +F ++LR +P+ + + P ++
Sbjct: 68 ----FWTLLSKQEEM--VQKFVEEVLRINYKFLMSPIKTE-------------QRQPSMM 108
Query: 116 AEDYLDI------EGQPINPYSRTYPQEMIQTGISAIDKILLQ-------VFEGTSGIDA 162
Y++ + Q Y+ + Q ++ + + LL+ + +G G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-----LRQALLELRPAKNVLIDGVLGS-G 162
Query: 163 KNTVCEFTGDILRT-PVSEDMLGRVF 187
K V D+ + V M ++F
Sbjct: 163 KTWV---ALDVCLSYKVQCKMDFKIF 185
Score = 36.0 bits (82), Expect = 0.007
Identities = 29/199 (14%), Positives = 59/199 (29%), Gaps = 55/199 (27%)
Query: 1 MPG--KSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIER 58
+ G K+ + A + ++ M+ +LNL N + E
Sbjct: 158 VLGSGKTWV-----------AL-----DVCL----SYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 59 IITFQAK-YFSIYNDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAE 117
++ K + I + +R LR + L R+ KP + +L
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSN---IKLRIHSIQAELRRLL--KSKPYENCLLVL-- 250
Query: 118 DYLDIEGQPINPYSRTYPQEMIQTGISAID---KILL-----QVFEGTSGIDAKNTVCEF 169
+++ +A + KILL QV + S + +
Sbjct: 251 L--NVQNAKA---------------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 170 TGDILRTPVSEDMLGRVFN 188
L + +L + +
Sbjct: 294 HSMTLTPDEVKSLLLKYLD 312
Score = 30.6 bits (68), Expect = 0.41
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 34/121 (28%)
Query: 7 LDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVC-----LFLNLA--------ND 53
+ F +VF ++ RF +Q + + N L ND
Sbjct: 486 HPERMTLFRMVF----LDF---RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 54 PTIER----IITFQAKYFSIYNDGNNRGSFICEFTGDILRTPVSEDMLGRVFNGSGKPID 109
P ER I+ F + N ++T D+LR + + +F + K +
Sbjct: 539 PKYERLVNAILDF------LPKIEEN--LICSKYT-DLLRIALMAED-EAIFEEAHKQVQ 588
Query: 110 K 110
+
Sbjct: 589 R 589
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 35.1 bits (81), Expect = 0.013
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 84 TGDILRTPVSEDMLGRVFN--GSGKPIDKGPPILAEDYLDIEG-------QPINPYSRTY 134
G + V D+ GRV +G+ + P ++ ED +++ + +
Sbjct: 141 FGFTHKILVPPDVRGRVKEVKPAGEYTVEEPVVVLEDGTELKMYHTWPVRRARPVQRKLD 200
Query: 135 PQEMIQTGISAIDKILLQVFEGTSGI 160
P TG+ +D + GT+ I
Sbjct: 201 PNTPFLTGMRILDVLFPVAMGGTAAI 226
Score = 30.9 bits (70), Expect = 0.26
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 147 DKILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 196
D +QV+E TSG+ TG L + ML +++G +P+++
Sbjct: 45 DTAFVQVYEDTSGL-KVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLER 93
Score = 27.4 bits (61), Expect = 3.6
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 148 KILLQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFN--GSGKPID 195
+++ + G TV E G + V D+ GRV +G+
Sbjct: 120 TPMVKPGDEVRGGMVLGTVPE-FGFTHKILVPPDVRGRVKEVKPAGEYTV 168
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 1.0
Identities = 11/97 (11%), Positives = 20/97 (20%), Gaps = 41/97 (42%)
Query: 21 MGVNMETARFFKQDFEENGSMENVC-----LFLNLANDPTIERIITFQAKYFSIYNDGNN 75
M + E+ N ++ C + +
Sbjct: 1 M-MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFS-------------------- 39
Query: 76 RGSFICEFTGDILRTPVSEDMLGRVFNGSGKPIDKGP 112
G +C G +L D K +D
Sbjct: 40 EGDVVCALCGLVL-----SD----------KLVDTRS 61
>1koe_A Endostatin; angiogenesis inhibitor, collagen XVIII,
non-collageneous domain, heparin-binding domain; 1.50A
{Mus musculus} SCOP: d.169.1.5 PDB: 1dy0_A 1dy1_A 1bnl_A
Length = 172
Score = 27.6 bits (61), Expect = 2.2
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 100 VFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTG 142
+F+GS + G I + D D+ P +PQ+ + G
Sbjct: 80 LFSGSQGQLQPGARIFSFDGRDVLRHP------AWPQKSVWHG 116
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal
rearrangement, cytoplasm, membrane, phosphorylation,
polymorphism, proto-oncogene; NMR {Homo sapiens}
Length = 45
Score = 25.6 bits (55), Expect = 2.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 107 PIDKGPPILAEDYLDIEGQPINPYSRTYPQE 137
P P L E D++ PINP+S + ++
Sbjct: 13 PWRATNPFLNETLQDVQPSPINPFSAFFEEQ 43
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent
methyltransferase histone H3 lysine- 9 methylation;
1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Length = 302
Score = 27.6 bits (61), Expect = 2.7
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 76 RGSFICEFTGDILRTPVSE 94
RG F+ + G+I+ + ++
Sbjct: 155 RGQFVDRYLGEIITSEEAD 173
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 27.8 bits (61), Expect = 3.1
Identities = 6/53 (11%), Positives = 10/53 (18%), Gaps = 2/53 (3%)
Query: 12 DNFAIVFAAMGVNMETARFFKQ--DFEENGSMENVCLFLNLANDPTIERIITF 62
A G + + F CL + + F
Sbjct: 153 RENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGF 205
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 27.5 bits (61), Expect = 3.6
Identities = 4/13 (30%), Positives = 9/13 (69%)
Query: 76 RGSFICEFTGDIL 88
G+FI + G+++
Sbjct: 159 AGTFITCYLGEVI 171
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 27.1 bits (60), Expect = 4.0
Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 15/97 (15%)
Query: 111 GPPILAEDYL---DIEGQPINPYSRTYPQEMIQTGISAID--------KILLQVFEGTSG 159
GP E + DI G P R++ +E + TGI ID K+
Sbjct: 427 GPAYANEVVVYKGDIYGIPKTKKWRSFFEEGVPTGIRYIDGFAYYAARKVEEAAMREQEE 486
Query: 160 IDAKNTVCEFTGDI-LRTPVSEDMLGRVFNGSGKPID 195
+ K + E DI L + + R ID
Sbjct: 487 VKVKARIVENLSDINLYI---HENVRRYILWKKGKID 520
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET,
lysine, alternative splicing, cell cycle, cell
division, chromatin regulator, chromosomal protein,
coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB:
3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A*
Length = 166
Score = 26.1 bits (58), Expect = 6.7
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 75 NRGSFICEFTGDILRTPVSE 94
+RG F+ E+ GD++ ++
Sbjct: 51 SRGDFVVEYHGDLIEITDAK 70
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 26.3 bits (58), Expect = 7.3
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 12 DNFAIVFAAMGVNMETARFFKQ----DFEENGSMENVCLFLNLANDPTIERIITFQAKYF 67
F V+ + G+NME +F + + N V N ++R + +
Sbjct: 118 SYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSE 177
Query: 68 S 68
Sbjct: 178 G 178
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 26.0 bits (57), Expect = 8.6
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 76 RGSFICEFTGDILRTPVSE 94
G+F+CE+ G+++ ++
Sbjct: 169 PGTFVCEYVGELISDSEAD 187
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 26.0 bits (57), Expect = 9.0
Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 4 KSVLDDSEDNFAIVFAAMGVNMETARFFKQ-DFEENGSMENVCLFLNLANDPTIERIITF 62
+ L + MG + + F + E + ++++ + T+ R++
Sbjct: 92 EVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILE--KGDYWQTVIDISKNVTLSRVMRS 149
Query: 63 QAK 65
Sbjct: 150 ITI 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.414
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,289,006
Number of extensions: 201449
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 55
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)