RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5597
(204 letters)
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 81.1 bits (200), Expect = 3e-19
Identities = 27/70 (38%), Positives = 32/70 (45%)
Query: 91 PVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKIL 150
PVSE LGRV N KPID I A + IE SR E +QTG+ AID ++
Sbjct: 3 PVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMI 62
Query: 151 LQVFEGTSGI 160
I
Sbjct: 63 PVGRGQRELI 72
Score = 43.0 bits (101), Expect = 7e-06
Identities = 13/19 (68%), Positives = 13/19 (68%)
Query: 177 PVSEDMLGRVFNGSGKPID 195
PVSE LGRV N KPID
Sbjct: 3 PVSEAYLGRVINALAKPID 21
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 80.2 bits (198), Expect = 5e-19
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 88 LRTPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAID 147
+R PV + LGR+ N G+PID+ PI + + I + + QE++ TGI +D
Sbjct: 1 IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVD 60
Query: 148 KILLQVFEGTSGI 160
+ G G+
Sbjct: 61 LLAPYAKGGKIGL 73
Score = 44.7 bits (106), Expect = 2e-06
Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 18/83 (21%)
Query: 3 GKSVL-------DDSEDNFAIVFAAMGVNMETARFFKQDFEENG------SMENVCLFLN 49
GK+VL VFA +G + E+G + V L
Sbjct: 80 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYG 139
Query: 50 LANDPTIERII-----TFQAKYF 67
N+P R A+YF
Sbjct: 140 QMNEPPGARARVALTGLTVAEYF 162
Score = 43.2 bits (102), Expect = 7e-06
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 174 LRTPVSEDMLGRVFNGSGKPID 195
+R PV + LGR+ N G+PID
Sbjct: 1 IRIPVGPETLGRIMNVIGEPID 22
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 80.6 bits (199), Expect = 5e-19
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 91 PVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDKIL 150
PV E++LGRV + G ID PI ++ + + R +E +QTGI A+D ++
Sbjct: 4 PVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLV 63
Query: 151 LQVFEGTSGI 160
I
Sbjct: 64 PIGRGQRELI 73
Score = 46.7 bits (111), Expect = 4e-07
Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 8 DDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITFQ---- 63
D + ++ A+G T + + +M+ + A+D + +
Sbjct: 99 TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCS 158
Query: 64 -AKYF 67
+YF
Sbjct: 159 MGEYF 163
Score = 41.3 bits (97), Expect = 3e-05
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 177 PVSEDMLGRVFNGSGKPID 195
PV E++LGRV + G ID
Sbjct: 4 PVGEELLGRVVDALGNAID 22
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme)
{Plasmodium vivax [TaxId: 5855]}
Length = 373
Score = 26.1 bits (56), Expect = 3.4
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 9 DSEDNFAIVFAAMGVNME-TARFFKQDFEENGSMENVCLFLNLANDPTIERII---TFQA 64
D+++ + F + ++ E +C+ L D I F
Sbjct: 296 DNKEMPTLEFKSANNTYTLEPEYYMNPILEVDD--TLCMITMLPVDIDSNTFILGDPFMR 353
Query: 65 KYFSIYNDGNNRGSF 79
KYF++++ F
Sbjct: 354 KYFTVFDYDKESVGF 368
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading
enzyme) {Plasmodium falciparum, plasmepsin II [TaxId:
5833]}
Length = 329
Score = 25.8 bits (55), Expect = 4.3
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 42 ENVCLFLNLANDPTIERII---TFQAKYFSIYNDGNNRGSF 79
+C+ + D + I F KYF++++ N+
Sbjct: 282 PGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGI 322
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium
janthinellum), penicillopepsin [TaxId: 5079]}
Length = 323
Score = 25.4 bits (54), Expect = 5.2
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 43 NVCLFLNLANDPTIERII--TFQAKYFSIYNDGNNRGSF 79
+ CL +N I F + +++ + F
Sbjct: 281 STCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGF 319
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}
Length = 357
Score = 25.3 bits (54), Expect = 6.3
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 8 DDSEDNFAIVFAAMGVNMETARF---FKQDFEENGSMENVCLFLNLANDPTIERII---T 61
DS+ F++V G + +T + C+F+ + I
Sbjct: 272 QDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFI--VLPDGGNQFIVGNL 329
Query: 62 FQAKYFSIYNDGNNRGSF 79
F + ++Y+ G NR F
Sbjct: 330 FLRFFVNVYDFGKNRIGF 347
>d1dy2a_ d.169.1.5 (A:) Endostatin domain of collagen alpha1(xv)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 168
Score = 24.7 bits (54), Expect = 8.1
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 100 VFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMI 139
+F+G G + PI + D D+ P ++PQ+++
Sbjct: 76 IFSGDGGQFNTHIPIYSFDGRDVMTDP------SWPQKVV 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.414
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 798,800
Number of extensions: 38303
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 23
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)