Query psy5598
Match_columns 128
No_of_seqs 182 out of 1024
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 21:37:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09099 type III secretion sy 99.9 7.5E-24 1.6E-28 178.3 15.5 111 12-126 11-122 (441)
2 COG1157 FliI Flagellar biosynt 99.9 4.8E-24 1E-28 177.4 12.6 102 23-126 20-122 (441)
3 PRK07196 fliI flagellum-specif 99.9 9.2E-24 2E-28 177.4 14.3 102 23-126 13-114 (434)
4 PRK06936 type III secretion sy 99.9 1.8E-23 3.8E-28 175.8 15.5 115 8-126 6-121 (439)
5 PRK08972 fliI flagellum-specif 99.9 3.4E-23 7.3E-28 174.2 15.4 112 12-126 10-121 (444)
6 PRK08472 fliI flagellum-specif 99.9 2.5E-23 5.4E-28 174.8 14.5 102 23-126 14-116 (434)
7 PRK04196 V-type ATP synthase s 99.9 2.5E-23 5.4E-28 175.9 13.8 100 26-126 2-102 (460)
8 PRK07721 fliI flagellum-specif 99.9 2.7E-23 5.9E-28 174.8 13.9 101 23-125 14-116 (438)
9 PRK08927 fliI flagellum-specif 99.9 4.1E-23 8.8E-28 173.8 14.7 103 23-126 13-116 (442)
10 PRK09281 F0F1 ATP synthase sub 99.9 3.1E-23 6.8E-28 176.8 14.2 120 1-126 1-121 (502)
11 PRK05688 fliI flagellum-specif 99.9 5.1E-23 1.1E-27 173.5 15.3 110 13-126 15-127 (451)
12 PRK06002 fliI flagellum-specif 99.9 3.9E-23 8.4E-28 174.2 14.5 112 12-126 9-123 (450)
13 TIGR03324 alt_F1F0_F1_al alter 99.9 4.5E-23 9.7E-28 175.4 14.8 114 8-126 7-121 (497)
14 PRK05922 type III secretion sy 99.9 3.7E-23 8E-28 173.8 13.9 102 23-126 15-116 (434)
15 PRK13343 F0F1 ATP synthase sub 99.9 5.3E-23 1.2E-27 175.2 15.0 114 8-126 7-121 (502)
16 PRK07960 fliI flagellum-specif 99.9 4.3E-23 9.4E-28 173.9 14.0 111 12-126 14-134 (455)
17 TIGR02546 III_secr_ATP type II 99.9 5.3E-23 1.1E-27 172.4 13.4 101 24-126 2-102 (422)
18 TIGR01040 V-ATPase_V1_B V-type 99.9 5.7E-23 1.2E-27 173.4 12.7 99 27-126 1-100 (466)
19 PRK06820 type III secretion sy 99.9 1.7E-22 3.7E-27 170.0 15.6 113 8-125 8-122 (440)
20 TIGR00962 atpA proton transloc 99.9 1.2E-22 2.7E-27 173.2 14.5 114 8-126 6-120 (501)
21 PRK06315 type III secretion sy 99.9 1.4E-22 3.1E-27 170.6 14.2 102 23-126 19-122 (442)
22 TIGR01041 ATP_syn_B_arch ATP s 99.9 8.9E-23 1.9E-27 172.5 12.8 99 27-126 1-100 (458)
23 PRK02118 V-type ATP synthase s 99.9 2E-22 4.3E-27 169.3 13.7 98 26-126 3-100 (436)
24 TIGR03498 FliI_clade3 flagella 99.9 2.6E-22 5.7E-27 168.0 12.8 97 29-126 1-98 (418)
25 TIGR03496 FliI_clade1 flagella 99.9 3E-22 6.4E-27 167.4 12.8 96 29-126 1-96 (411)
26 TIGR03497 FliI_clade2 flagella 99.9 3.8E-22 8.3E-27 166.9 13.0 96 29-126 1-96 (413)
27 TIGR01026 fliI_yscN ATPase Fli 99.9 5.9E-22 1.3E-26 166.8 12.8 100 23-124 19-119 (440)
28 PRK07594 type III secretion sy 99.9 7.9E-22 1.7E-26 165.7 13.1 97 24-125 18-114 (433)
29 PRK06793 fliI flagellum-specif 99.9 1.3E-21 2.8E-26 164.4 12.0 99 23-126 17-115 (432)
30 PRK12597 F0F1 ATP synthase sub 99.9 2.7E-21 5.8E-26 163.6 12.4 97 28-126 3-102 (461)
31 PRK07165 F0F1 ATP synthase sub 99.9 3.2E-21 6.9E-26 164.3 12.7 94 30-126 4-97 (507)
32 CHL00059 atpA ATP synthase CF1 99.9 2.5E-21 5.5E-26 164.2 12.0 96 26-126 5-100 (485)
33 PRK09280 F0F1 ATP synthase sub 99.9 3.2E-21 7E-26 163.0 12.3 99 27-126 2-103 (463)
34 PRK08149 ATP synthase SpaL; Va 99.9 4.1E-21 8.9E-26 161.2 12.7 99 24-124 3-104 (428)
35 TIGR01043 ATP_syn_A_arch ATP s 99.9 2.6E-21 5.6E-26 166.8 11.3 92 29-124 2-93 (578)
36 PRK04192 V-type ATP synthase s 99.9 4.6E-21 1E-25 165.4 11.7 94 27-124 3-96 (586)
37 TIGR01042 V-ATPase_V1_A V-type 99.9 3E-21 6.5E-26 166.3 10.2 94 27-124 1-94 (591)
38 CHL00060 atpB ATP synthase CF1 99.8 8.8E-21 1.9E-25 161.2 12.5 98 27-126 15-120 (494)
39 TIGR01039 atpD ATP synthase, F 99.8 1.2E-20 2.5E-25 159.5 11.5 97 28-126 2-102 (461)
40 COG1156 NtpB Archaeal/vacuolar 99.8 3.2E-20 6.8E-25 154.2 11.2 103 24-126 3-105 (463)
41 PRK14698 V-type ATP synthase s 99.8 3.9E-20 8.5E-25 167.9 10.5 92 27-122 3-94 (1017)
42 PTZ00185 ATPase alpha subunit; 99.8 2.8E-19 6.2E-24 152.9 12.8 97 26-123 38-138 (574)
43 TIGR03305 alt_F1F0_F1_bet alte 99.8 2.5E-19 5.5E-24 151.1 11.3 95 29-126 1-97 (449)
44 COG0056 AtpA F0F1-type ATP syn 99.8 1.7E-18 3.7E-23 145.3 12.3 115 8-127 7-122 (504)
45 KOG1351|consensus 99.7 2.4E-17 5.1E-22 133.9 9.4 115 12-126 8-122 (489)
46 COG1155 NtpA Archaeal/vacuolar 99.7 4E-17 8.7E-22 139.0 9.0 91 28-122 2-92 (588)
47 KOG1352|consensus 99.5 2.5E-15 5.4E-20 125.6 1.3 93 25-121 18-110 (618)
48 COG0055 AtpD F0F1-type ATP syn 99.5 8.5E-14 1.8E-18 115.6 7.4 98 28-126 3-104 (468)
49 PF02874 ATP-synt_ab_N: ATP sy 99.3 1E-11 2.2E-16 79.3 7.8 66 31-97 1-69 (69)
50 KOG1353|consensus 99.3 1.5E-12 3.3E-17 103.7 2.7 98 24-126 17-114 (340)
51 KOG1350|consensus 99.2 7.9E-12 1.7E-16 102.8 4.7 100 26-127 50-151 (521)
52 PRK12608 transcription termina 97.0 0.00034 7.4E-09 58.6 2.2 38 82-123 55-92 (380)
53 PF09378 HAS-barrel: HAS barre 92.8 0.35 7.7E-06 31.5 5.2 46 27-73 4-49 (91)
54 cd01735 LSm12_N LSm12 belongs 77.8 8.3 0.00018 24.3 4.9 33 47-79 3-35 (61)
55 TIGR02038 protease_degS peripl 56.8 58 0.0013 26.7 7.1 71 28-101 81-162 (351)
56 PRK10898 serine endoprotease; 45.8 1.7E+02 0.0037 24.1 8.5 71 28-101 81-162 (353)
57 PF04085 MreC: rod shape-deter 44.2 1.2E+02 0.0026 21.8 8.8 84 27-115 36-121 (152)
58 cd04454 S1_Rrp4_like S1_Rrp4_l 38.2 50 0.0011 20.8 3.2 55 60-115 7-64 (82)
59 COG3485 PcaH Protocatechuate 3 38.1 14 0.0003 29.2 0.6 15 108-122 75-89 (226)
60 TIGR00219 mreC rod shape-deter 38.0 71 0.0015 25.7 4.7 43 63-114 118-163 (283)
61 PF09953 DUF2187: Uncharacteri 37.6 81 0.0018 19.7 3.9 29 46-78 3-31 (57)
62 PRK10942 serine endoprotease; 36.9 2.7E+02 0.0059 23.9 8.4 70 28-100 114-196 (473)
63 PRK10139 serine endoprotease; 34.1 1.7E+02 0.0036 25.1 6.6 71 28-101 93-176 (455)
64 COG3168 PilP Tfp pilus assembl 34.0 81 0.0018 23.8 4.1 59 13-78 86-147 (170)
65 smart00333 TUDOR Tudor domain. 33.7 98 0.0021 17.8 5.7 27 47-73 3-29 (57)
66 PRK06247 pyruvate kinase; Prov 30.4 3.7E+02 0.0081 23.5 9.0 33 6-42 46-78 (476)
67 PF11717 Tudor-knot: RNA bindi 30.0 1.2E+02 0.0025 18.1 3.7 26 48-73 2-27 (55)
68 PF02470 MCE: mce related prot 29.2 1E+02 0.0022 19.3 3.6 22 75-97 4-25 (81)
69 PRK08515 flgA flagellar basal 28.8 1.4E+02 0.003 23.1 4.9 24 46-69 192-215 (222)
70 PF02736 Myosin_N: Myosin N-te 27.2 1.3E+02 0.0027 17.0 5.7 30 52-81 3-32 (42)
71 TIGR00996 Mtu_fam_mce virulenc 26.5 85 0.0018 24.6 3.4 24 73-97 32-55 (291)
72 TIGR03170 flgA_cterm flagella 26.0 2.1E+02 0.0046 19.3 5.0 31 38-68 82-115 (122)
73 TIGR01064 pyruv_kin pyruvate k 25.6 4.4E+02 0.0096 22.8 9.5 33 6-42 42-74 (473)
74 PRK15095 FKBP-type peptidyl-pr 25.2 2.3E+02 0.0049 20.6 5.2 51 47-102 93-143 (156)
75 PF11608 Limkain-b1: Limkain b 23.9 1.9E+02 0.004 19.7 4.1 33 6-45 16-48 (90)
76 PF14085 DUF4265: Domain of un 23.7 2.5E+02 0.0055 19.3 7.9 52 34-85 9-64 (117)
77 PF00775 Dioxygenase_C: Dioxyg 23.2 34 0.00073 25.8 0.5 14 109-122 33-46 (183)
78 COG2100 Predicted Fe-S oxidore 23.1 2.2E+02 0.0048 24.2 5.3 48 47-95 352-399 (414)
79 PTZ00300 pyruvate kinase; Prov 22.5 5.1E+02 0.011 22.4 8.2 99 6-115 16-124 (454)
80 cd05707 S1_Rrp5_repeat_sc11 S1 22.5 1.7E+02 0.0037 17.4 3.6 25 63-87 4-28 (68)
81 cd05702 S1_Rrp5_repeat_hs11_sc 22.2 1.7E+02 0.0038 17.6 3.6 52 62-114 3-59 (70)
82 PF04452 Methyltrans_RNA: RNA 22.2 2.8E+02 0.0061 21.0 5.5 36 46-81 16-51 (225)
83 COG1974 LexA SOS-response tran 21.0 3.9E+02 0.0084 20.5 7.1 52 35-89 129-183 (201)
84 PF13144 SAF_2: SAF-like 20.8 3.3E+02 0.0071 20.0 5.5 23 46-68 166-189 (196)
85 cd03464 3,4-PCD_beta Protocate 20.6 43 0.00093 26.2 0.6 14 109-122 69-82 (220)
86 COG4873 Uncharacterized protei 20.6 1.7E+02 0.0036 19.1 3.2 39 47-89 24-64 (81)
87 cd00288 Pyruvate_Kinase Pyruva 20.4 5.8E+02 0.013 22.2 9.5 33 6-42 43-75 (480)
No 1
>PRK09099 type III secretion system ATPase; Provisional
Probab=99.91 E-value=7.5e-24 Score=178.28 Aligned_cols=111 Identities=25% Similarity=0.322 Sum_probs=97.3
Q ss_pred hHHHHhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCce-EEEEEEEEeCCEEEEEEccCCCCcccCC
Q psy5598 12 NVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSY-RAGQVLEVSGSKAVVQVFEGTSGIDAKN 90 (128)
Q Consensus 12 ~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~-~~geVv~~~~~~v~l~~~~~~~Gi~~G~ 90 (128)
.+.++++. ..+.+.+|+|++|.|++++++|+. +++||+|.|...++.. ..|||++|+++.+.+|||+++.||+.|
T Consensus 11 ~~~~~~~~--~~~~~~~G~V~~v~g~~i~~~g~~-~~~ge~~~i~~~~g~~~~~~eVv~~~~~~~~l~~~~~t~gi~~g- 86 (441)
T PRK09099 11 ALERELAA--LPAVRRTGKVVEVIGTLLRVSGLD-VTLGELCELRQRDGTLLQRAEVVGFSRDVALLSPFGELGGLSRG- 86 (441)
T ss_pred HHHHHHhc--CCcceEeeEEEEEECCEEEEeccC-CCCCCEEEEecCCCCeeeEEEEEEEECCEEEEEEccCCcCCCCC-
Confidence 34444443 367778999999999999999985 9999999995434443 789999999999999999999999999
Q ss_pred cEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 91 TVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 91 ~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
++|.++|++++||+|++|||||+|++|+|||+++++
T Consensus 87 ~~V~~tg~~~~v~vg~~lLGrV~d~~G~piD~~~~~ 122 (441)
T PRK09099 87 TRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPL 122 (441)
T ss_pred CEEEeCCCccEEEeccccccCEEcccCCccCCCCCC
Confidence 599999999999999999999999999999998764
No 2
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.91 E-value=4.8e-24 Score=177.40 Aligned_cols=102 Identities=24% Similarity=0.387 Sum_probs=93.4
Q ss_pred CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCc-eEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeee
Q psy5598 23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS-YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILR 101 (128)
Q Consensus 23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~-~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~ 101 (128)
.++..+|+|++|.|.++++.|+ .+++||+|.|+.+++. ...|||++|+++.+++|||++..|+++| ++|.+++++++
T Consensus 20 ~~~~~~G~v~~v~G~~lea~g~-~~~iGelc~i~~~~~~~~~~aEVvgf~~~~~~L~p~~~~~gv~~g-~~V~~~~~~~~ 97 (441)
T COG1157 20 DPYKRRGRLTRVTGLLLEAVGP-QARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPVEGVSPG-AEVVPTGRPLS 97 (441)
T ss_pred CcceEEEEEEEEeeeEEEEecC-CCcccceEEEEecCCCCceeEEEEEEcCCeEEEeccCccccCCCC-CEEEecCCccc
Confidence 6777899999999999999997 5999999999976433 2399999999999999999999999999 59999999999
Q ss_pred EeCCCCCccceecCCcccccCCCCC
Q psy5598 102 TPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 102 Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+++|++|||||+|++|+||||++.+
T Consensus 98 v~~g~~lLGRVld~~G~plDg~~~~ 122 (441)
T COG1157 98 VPVGDALLGRVLDGLGRPLDGGGLP 122 (441)
T ss_pred cccChhhhhhhhccCCCcCcCCCCC
Confidence 9999999999999999999996654
No 3
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=99.91 E-value=9.2e-24 Score=177.42 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=93.5
Q ss_pred CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeE
Q psy5598 23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRT 102 (128)
Q Consensus 23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~V 102 (128)
.+.+.+|+|++|.|.++++.|+ .+++||+|+|...++..+.|||++|+++.+++|||++++|++.| ++|.+++++++|
T Consensus 13 ~~~~~~G~v~~v~g~~~~~~~~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~v~~~~~~~~v 90 (434)
T PRK07196 13 HLARVAGRLVRVTGLLLESVGC-RLAIGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGVLGG-ARVFPSEQDGEL 90 (434)
T ss_pred CccceeeEEEEEEcCEEEEecC-CCCcCCEEEEEeCCCceEEEEEEEecCCEEEEEECCCccCCCCC-CEEEECCCccEE
Confidence 5667799999999999999998 59999999996434435899999999999999999999999999 599999999999
Q ss_pred eCCCCCccceecCCcccccCCCCC
Q psy5598 103 PVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 103 pvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
|+|++|||||+|++|+|||+++++
T Consensus 91 ~vg~~llGrv~d~~G~pld~~~~~ 114 (434)
T PRK07196 91 LIGDSWLGRVINGLGEPLDGKGQL 114 (434)
T ss_pred EcCccccCCeeCcCCCCcCCCCCC
Confidence 999999999999999999998764
No 4
>PRK06936 type III secretion system ATPase; Provisional
Probab=99.91 E-value=1.8e-23 Score=175.84 Aligned_cols=115 Identities=22% Similarity=0.261 Sum_probs=99.5
Q ss_pred HHHHhHHHHhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCc-eEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598 8 ALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS-YRAGQVLEVSGSKAVVQVFEGTSGI 86 (128)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~-~~~geVv~~~~~~v~l~~~~~~~Gi 86 (128)
.+...+.++++.+ .+.+.+|+|++|.|+++++.+. .+++||+|.|...++. .+.+||++|+++.+++|||++++||
T Consensus 6 ~~~~~~~~~~~~~--~~~~~~G~V~~v~g~~v~~~~~-~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi 82 (439)
T PRK06936 6 YIPHHLRHAIVGS--RLIQIRGRVTQVTGTILKAVVP-GVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLTPLGEMYGI 82 (439)
T ss_pred HHHHHHHHHHhcC--CccceeeEEEEEECcEEEEEeC-CCCCCCEEEEecCCCCcceEEEEEEEECCeEEEEecCCCCCC
Confidence 3444555555554 5577799999999999999975 6999999999743333 4899999999999999999999999
Q ss_pred ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+.| ++|++||++++||+|++|||||+|++|+|||+++++
T Consensus 83 ~~g-~~V~~tg~~~~v~vg~~lLGRV~d~~G~plD~~~~~ 121 (439)
T PRK06936 83 SSN-TEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPP 121 (439)
T ss_pred CCC-CEEEeCCCceEEEeCccccCCEECCCCCccCCCCCC
Confidence 999 599999999999999999999999999999998764
No 5
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=99.91 E-value=3.4e-23 Score=174.18 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=97.8
Q ss_pred hHHHHhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCc
Q psy5598 12 NVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNT 91 (128)
Q Consensus 12 ~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~ 91 (128)
.|.+.-+.....+.+.+|+|++|.|++|++.|+. +++||+|.|...++ .+.|||++|+++.+.+|||++++||+.| +
T Consensus 10 ~~~~~~~~~~~~~~~~~G~v~~v~g~~i~~~g~~-~~ige~~~i~~~~~-~~~~EVv~~~~~~~~l~~~~~~~gi~~g-~ 86 (444)
T PRK08972 10 RLKQYKVKVPPFRAVASGKLVRVVGLTLEATGCR-APVGSLCSIETMAG-ELEAEVVGFDGDLLYLMPIEELRGVLPG-A 86 (444)
T ss_pred HHHHHhhccCCCCcceeeEEEEEEcCEEEEeeCC-CCCCCEEEEecCCC-cEEEEEEEecCCEEEEEECCCcCCCCCC-C
Confidence 3444445555556677999999999999999984 99999999953233 4899999999999999999999999999 5
Q ss_pred EEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 92 VCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 92 ~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+|.++|++++||+|++|||||+|++|+|||+++++
T Consensus 87 ~V~~tg~~~~v~vg~~llGRVid~~G~plD~~~~~ 121 (444)
T PRK08972 87 RVTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPI 121 (444)
T ss_pred EEEECCCccEEEcChhhcCCeECCCCCCcCCCCCC
Confidence 99999999999999999999999999999998765
No 6
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=99.91 E-value=2.5e-23 Score=174.83 Aligned_cols=102 Identities=20% Similarity=0.345 Sum_probs=93.2
Q ss_pred CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCC-ceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeee
Q psy5598 23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDG-SYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILR 101 (128)
Q Consensus 23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~-~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~ 101 (128)
.+.+.+|+|++|.|++++++|+. +++||+|.|...++ ..+.|||++|+++.+.++||+++.||+.| ++|.+++++++
T Consensus 14 ~~~~~~G~v~~v~g~~v~~~g~~-~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~t~gl~~G-~~V~~tg~~~~ 91 (434)
T PRK08472 14 NLSPRFGSITKISPTIIEADGLN-PSVGDIVKIESSDNGKECLGMVVVIEKEQFGISPFSFIEGFKIG-DKVFISKEGLN 91 (434)
T ss_pred CcceeeeEEEEEEccEEEEEecC-CCCCCEEEEecCCCCCceEEEEEEEeCCeEEEEEccCCCCCCCC-CEEEeCCCceE
Confidence 67788999999999999999985 99999999964221 24899999999999999999999999999 59999999999
Q ss_pred EeCCCCCccceecCCcccccCCCCC
Q psy5598 102 TPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 102 Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
||+|++|||||+|++|+|||+++++
T Consensus 92 v~vg~~llGRViD~~G~plD~~g~~ 116 (434)
T PRK08472 92 IPVGRNLLGRVVDPLGRPIDGKGAI 116 (434)
T ss_pred EEcChhhcCCEECCCCCcccCCCCC
Confidence 9999999999999999999998764
No 7
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=99.90 E-value=2.5e-23 Score=175.92 Aligned_cols=100 Identities=54% Similarity=0.855 Sum_probs=92.0
Q ss_pred eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcc-cCCcEEEEcCCeeeEeC
Q psy5598 26 ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID-AKNTVCEFTGDILRTPV 104 (128)
Q Consensus 26 ~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~-~G~~~V~~tg~~~~Vpv 104 (128)
+.||+|++|.|++++++|+..+++||+|+|...++....|||++|+++.+.++||+++.||+ .| ++|.+||++++||+
T Consensus 2 ~~yg~V~~i~g~~v~v~g~~~~~~ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~t~gl~i~G-~~V~~tg~~~~V~v 80 (460)
T PRK04196 2 KEYRTVSEIKGPLLFVEGVEGVAYGEIVEIELPNGEKRRGQVLEVSEDKAVVQVFEGTTGLDLKD-TKVRFTGEPLKLPV 80 (460)
T ss_pred ceeEEEEEEECcEEEEeccCCCCCCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEccCCCCCCCCC-CEEEeCCCccEEEc
Confidence 46999999999999999997899999999964344457999999999999999999999999 89 59999999999999
Q ss_pred CCCCccceecCCcccccCCCCC
Q psy5598 105 SEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 105 g~~lLGRViD~lG~PlDg~~~~ 126 (128)
|++|||||+|++|+|||+++++
T Consensus 81 g~~lLGRVvD~~G~PlD~~~~i 102 (460)
T PRK04196 81 SEDMLGRIFDGLGRPIDGGPEI 102 (460)
T ss_pred CcccccCEECccCCCccCCCCC
Confidence 9999999999999999998765
No 8
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.90 E-value=2.7e-23 Score=174.81 Aligned_cols=101 Identities=19% Similarity=0.330 Sum_probs=91.7
Q ss_pred CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCc--eEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCee
Q psy5598 23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS--YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDIL 100 (128)
Q Consensus 23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~--~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~ 100 (128)
.+.+.+|+|++|.|++|+++|+ .+++||+|.|...++. .+.|||++|+++.+.++||++++||++| ++|+++|+++
T Consensus 14 ~~~~~~G~v~~i~G~~i~~~~~-~~~ige~~~i~~~~~~~~~~~~EVi~~~~~~~~l~~~~~~~gl~~g-~~V~~tg~~~ 91 (438)
T PRK07721 14 DPYKRYGKVSRVIGLMIESKGP-ESSIGDVCYIHTKGGGDKAIKAEVVGFKDEHVLLMPYTEVAEIAPG-CLVEATGKPL 91 (438)
T ss_pred CccceecEEEEEECcEEEEEEC-CCCchheEEEEecCCCCceEEEEEEEEcCCEEEEEEccCccCCCCC-CEEEECCCcc
Confidence 6677899999999999999986 5999999999643222 4899999999999999999999999999 5999999999
Q ss_pred eEeCCCCCccceecCCcccccCCCC
Q psy5598 101 RTPVSEDMLGRVFNGSGKPIDKDCC 125 (128)
Q Consensus 101 ~Vpvg~~lLGRViD~lG~PlDg~~~ 125 (128)
+||+|++|||||+|++|+|||+++.
T Consensus 92 ~v~vg~~llGRv~d~~G~plD~~~~ 116 (438)
T PRK07721 92 EVKVGSGLIGQVLDALGEPLDGSAL 116 (438)
T ss_pred EEEechhhcCCEECcCCCccCCCCC
Confidence 9999999999999999999998753
No 9
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=99.90 E-value=4.1e-23 Score=173.78 Aligned_cols=103 Identities=21% Similarity=0.249 Sum_probs=94.4
Q ss_pred CCceeeeEEEEEECCEEEEEcCC-CCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeee
Q psy5598 23 QPRITYKTVSGVNGPLVILDEVK-FPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILR 101 (128)
Q Consensus 23 ~~~~~~G~V~~I~G~~i~v~g~~-~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~ 101 (128)
.+.+.+|+|++|.|++++++|++ .+++||+|.|...+++.+.|||++|+++.++++||+++.|++.| ++|++++++++
T Consensus 13 ~~~~~~g~v~~i~g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~V~~tg~~~~ 91 (442)
T PRK08927 13 DTLVIYGRVVAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRGDRALLMPFGPLEGVRRG-CRAVIANAAAA 91 (442)
T ss_pred CcceeeeEEEEEEccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCccCCCCC-CEEEeCCCccE
Confidence 67778999999999999999984 59999999996534435899999999999999999999999999 59999999999
Q ss_pred EeCCCCCccceecCCcccccCCCCC
Q psy5598 102 TPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 102 Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
||+|++|||||+|++|+|||+++++
T Consensus 92 v~vg~~llGRVid~~G~piDg~~~~ 116 (442)
T PRK08927 92 VRPSRAWLGRVVNALGEPIDGKGPL 116 (442)
T ss_pred EECChhhCCCEEccCCCCccCCCCC
Confidence 9999999999999999999998764
No 10
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=99.90 E-value=3.1e-23 Score=176.82 Aligned_cols=120 Identities=22% Similarity=0.300 Sum_probs=106.1
Q ss_pred CCcchHHHHHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEE
Q psy5598 1 MSISSKQALRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQV 79 (128)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~ 79 (128)
|+++.. ...+-+++++++|+..+. +.+|+|++|.|++++++|++++++||+|.|. ++ ..|||++++++.+.+++
T Consensus 1 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~~v~v~g~~~~~~ge~~~i~--~~--~~g~Vi~~~~~~~~~~~ 75 (502)
T PRK09281 1 MQINPE-EISAIIKQQIENFDAEAEVEEVGTVISVGDGIARVYGLDNVMAGELLEFP--GG--VYGIALNLEEDNVGAVI 75 (502)
T ss_pred CCCCHH-HHHHHHHHHHHhcCCcceeEEEEEEEEEeCCEEEEECccccccCCEEEEC--CC--cEEEEEEEcCCeEEEEE
Confidence 444333 344678889999987754 4689999999999999999889999999995 44 79999999999999999
Q ss_pred ccCCCCcccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 80 FEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 80 ~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
|+++.||+.| +.|.++|++++||+|++|||||+|++|+|||+++++
T Consensus 76 ~~~~~gi~~g-~~V~~~~~~~~v~vg~~llGrv~d~~G~pid~~~~~ 121 (502)
T PRK09281 76 LGDYEDIKEG-DTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPI 121 (502)
T ss_pred ecCcccccCC-CeeeecCCceEEecCHHhcCCEEccCCCCcCCCCCC
Confidence 9999999999 599999999999999999999999999999998764
No 11
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=99.90 E-value=5.1e-23 Score=173.52 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=96.7
Q ss_pred HHHHhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCc---eEEEEEEEEeCCEEEEEEccCCCCcccC
Q psy5598 13 VLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS---YRAGQVLEVSGSKAVVQVFEGTSGIDAK 89 (128)
Q Consensus 13 ~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~---~~~geVv~~~~~~v~l~~~~~~~Gi~~G 89 (128)
+.+.++.. .+.+.+|+|++|.|.++++.|+ .+++||+|.|...++. .+.|||++|+++.+.++||+++.||++|
T Consensus 15 ~~~~~~~~--~~~~~~g~v~~v~g~~~~~~g~-~~~~ge~c~i~~~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g 91 (451)
T PRK05688 15 YAEAISLP--AQPVVEGRLLRMVGLTLEAEGL-RAAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVFLMPVGSVAGIAPG 91 (451)
T ss_pred HHHHHhcC--CccceeeEEEEEEecEEEEecC-CCCCCCEEEEecCCCccccceEEEEEEEcCCEEEEEEccCccCCCCC
Confidence 44544443 6667799999999999999998 4999999999542331 4899999999999999999999999999
Q ss_pred CcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 90 NTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 90 ~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+.|+++|++++||+|++|||||+|++|+|||+++++
T Consensus 92 -~~V~~tg~~~~v~vg~~llGRV~d~~G~plD~~~~~ 127 (451)
T PRK05688 92 -ARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGPM 127 (451)
T ss_pred -CEEEECCCccEEEecccccCCEEeccCceecCCCCC
Confidence 599999999999999999999999999999998764
No 12
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=99.90 E-value=3.9e-23 Score=174.17 Aligned_cols=112 Identities=24% Similarity=0.264 Sum_probs=99.0
Q ss_pred hHHHHhcccC--CCCceeeeEEEEEECCEEEEEcCC-CCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCccc
Q psy5598 12 NVLAVTRDYI--SQPRITYKTVSGVNGPLVILDEVK-FPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDA 88 (128)
Q Consensus 12 ~~~~~~~~~~--~~~~~~~G~V~~I~G~~i~v~g~~-~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~ 88 (128)
.++++.+.|. ..+.+.+|+|++|.|.++++.|++ ++++||+|.|+..++ ...|||++|+++.+.+|||+++.||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~G~v~~v~g~~~~~~g~~~~~~iGe~~~i~~~~~-~~~~eVv~~~~~~~~l~~~~~~~gi~~ 87 (450)
T PRK06002 9 RLAALVERYAAPEPLVRIGGTVSEVTASHYRVRGLSRFVRLGDFVAIRADGG-THLGEVVRVDPDGVTVKPFEPRIEIGL 87 (450)
T ss_pred HHHHHHHhcccccCccceeEEEEEEeceEEEEEcCccCCCCCCEEEEECCCC-cEEEEEEEEeCCeEEEEEccCCcCCCC
Confidence 4677888887 345677999999999999999985 699999999964333 489999999999999999999999999
Q ss_pred CCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 89 KNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 89 G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
|+ +|.+ ++++++++|++|||||+|++|+|||+++++
T Consensus 88 g~-~v~~-~~~~~v~vg~~llGRV~d~~G~piDg~~~~ 123 (450)
T PRK06002 88 GD-AVFR-KGPLRIRPDPSWKGRVINALGEPIDGLGPL 123 (450)
T ss_pred CC-EEEe-CCCceeecCcccccCEECCCCcCCCCCCCC
Confidence 95 9999 668999999999999999999999998764
No 13
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=99.90 E-value=4.5e-23 Score=175.39 Aligned_cols=114 Identities=20% Similarity=0.290 Sum_probs=103.5
Q ss_pred HHHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598 8 ALRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI 86 (128)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi 86 (128)
.+.+-+++++++|+.... +.+|+|.+|.|+++++.|++++++||+|+|. ++ ..|||++|+++.+.+++|+++.||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~ii~v~gl~~~~~gEl~~i~--~~--~~g~Vi~l~~~~v~~~~l~~~~gi 82 (497)
T TIGR03324 7 KAFQQLDQARESFQPQLTVQEVGTVESVSTGIARVHGLPGVGFEELLRFP--GG--LLGIAFNVDEDEVGVVLLGEYSHL 82 (497)
T ss_pred HHHHHHHHHHHhcCCCcceeEEEEEEEEeceEEEEEccCCCCcCCEEEEC--CC--cEEEEEEEcCCeEEEEEecCCcCC
Confidence 355678888899987754 4689999999999999998889999999994 33 799999999999999999999999
Q ss_pred ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+.| +.|.++|++++||||++|||||+|++|+|||+++++
T Consensus 83 ~~G-~~V~~tg~~~~vpvg~~llGRVvd~lG~PiDg~~~~ 121 (497)
T TIGR03324 83 QAG-DEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPL 121 (497)
T ss_pred cCC-CEEEECCCCCeEECCHhhCcCEECCCCCCcCCCCCC
Confidence 999 599999999999999999999999999999998765
No 14
>PRK05922 type III secretion system ATPase; Validated
Probab=99.90 E-value=3.7e-23 Score=173.75 Aligned_cols=102 Identities=19% Similarity=0.223 Sum_probs=93.1
Q ss_pred CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeE
Q psy5598 23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRT 102 (128)
Q Consensus 23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~V 102 (128)
.+.+.+|+|++|.|++++++|+. +++||+|.|...++..+.|||++|+++.+.+|||++++||++|+ +|++++++++|
T Consensus 15 ~~~~~~g~v~~v~g~~i~~~g~~-~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~G~-~V~~~~~~~~v 92 (434)
T PRK05922 15 QPYRECGLLSRVSGNLLEAQGLS-ACLGELCQISLSKSPPILAEVIGFHNRTTLLMSLSPIHYVALGA-EVLPLRRPPSL 92 (434)
T ss_pred CcceeeeEEEEEEccEEEEEeCC-CCCCCEEEEecCCCCeeEEEEEEEeCCeEEEEEccCCCCCCCCC-EEEeCCCCcEE
Confidence 56678999999999999999985 89999999974323348999999999999999999999999995 99999999999
Q ss_pred eCCCCCccceecCCcccccCCCCC
Q psy5598 103 PVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 103 pvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
|+|++|||||+|++|+|||+++++
T Consensus 93 ~vg~~llGrv~d~~G~pld~~~~~ 116 (434)
T PRK05922 93 HLSDHLLGRVLDGFGNPLDGKEQL 116 (434)
T ss_pred EcChhhcCCEeCCCCCccCCCCCC
Confidence 999999999999999999998764
No 15
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=99.90 E-value=5.3e-23 Score=175.23 Aligned_cols=114 Identities=21% Similarity=0.324 Sum_probs=103.9
Q ss_pred HHHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598 8 ALRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI 86 (128)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi 86 (128)
...+-+++.+++|...+. +.+|+|++|.|+++++.|++++++||+|.|. ++ ..|+|++|+++.+.+++|+++.||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~i~~v~gl~~~~~ge~~~i~--~~--~~g~V~~l~~~~v~~~~l~~~~gi 82 (502)
T PRK13343 7 EWLARIRQRIARYEPQPDAREIGRVESVGDGIAFVSGLPDAALDELLRFE--GG--SRGFAFNLEEELVGAVLLDDTADI 82 (502)
T ss_pred HHHHHHHHHHhcCCCcceeEEeeEEEEEeCCEEEEeCCCCCCCCCEEEEC--CC--cEEEEEEecCCeEEEEEeeCCCCC
Confidence 455778888999987654 4689999999999999998889999999994 44 799999999999999999999999
Q ss_pred ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+.| +.|+++|++++||+|++|||||+|++|+|||+++++
T Consensus 83 ~~G-~~V~~tg~~~~vpvg~~llGRVid~lG~piDg~~~i 121 (502)
T PRK13343 83 LAG-TEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPL 121 (502)
T ss_pred CCC-CEeEecCCcceeecCHHhcCCEECCCCCcccCCCCC
Confidence 999 599999999999999999999999999999998775
No 16
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=99.90 E-value=4.3e-23 Score=173.94 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=96.7
Q ss_pred hHHHHhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCc---eEEEEEEEEeCCEEEEEEccCCCCccc
Q psy5598 12 NVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS---YRAGQVLEVSGSKAVVQVFEGTSGIDA 88 (128)
Q Consensus 12 ~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~---~~~geVv~~~~~~v~l~~~~~~~Gi~~ 88 (128)
++.++++.. .+.+.+|+|++|.|.+|++.|+ .+++||+|.|...++. .+.||||+|+++.+++|||+++.||+.
T Consensus 14 ~~~~~~~~~--~~~~~~G~v~~v~g~~v~~~g~-~~~iG~~c~i~~~~~~~~~~~~~eVvg~~~~~~~l~~~~~~~gi~~ 90 (455)
T PRK07960 14 NFEAKMAQL--PAVRRYGRLTRATGLVLEATGL-QLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGILP 90 (455)
T ss_pred HHHHHHhcC--CccccccEEEEEEEEEEEEeCC-CCCCCCEEEEEeCCCccccceeeeEEEecCCEEEEEECCCccCCCC
Confidence 345544443 6667799999999999999997 6999999999532331 378999999999999999999999999
Q ss_pred CCcEEEEc-------CCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 89 KNTVCEFT-------GDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 89 G~~~V~~t-------g~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
| ++|+++ |++++||||++|||||+|++|+|||+++++
T Consensus 91 g-~~v~~~~~~~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~ 134 (455)
T PRK07960 91 G-ARVYARNISGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAP 134 (455)
T ss_pred C-CEEEECCcccccCCCceEEECCcccccCEECCCccccCCCCCC
Confidence 9 599998 999999999999999999999999998764
No 17
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=99.90 E-value=5.3e-23 Score=172.39 Aligned_cols=101 Identities=27% Similarity=0.341 Sum_probs=91.7
Q ss_pred CceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598 24 PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP 103 (128)
Q Consensus 24 ~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp 103 (128)
+.+.+|+|++|.|+++++.+. ++++||+|.|...++..+.|||++|+++.+.++||++++||+.| ++|+++|++++||
T Consensus 2 ~~~~~G~V~~v~g~~v~v~~~-~~~~ge~~~i~~~~~~~~~~eVi~~~~~~~~l~~~~~~~gl~~G-~~V~~tg~~~~v~ 79 (422)
T TIGR02546 2 PVRVRGRVTEVSGTLLKAVLP-GARVGELCLIRRRDPSQLLAEVVGFTGDEALLSPLGELHGISPG-SEVIPTGRPLSIR 79 (422)
T ss_pred CcceeEEEEEEECcEEEEEEC-CCCCCCEEEEeeCCCCeEEEEEEEEcCCcEEEEEccCccCCCCC-CEEEECCCCceEE
Confidence 346689999999999999975 69999999996433445899999999999999999999999999 5999999999999
Q ss_pred CCCCCccceecCCcccccCCCCC
Q psy5598 104 VSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 104 vg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+|++|||||+|++|+|||+++++
T Consensus 80 vg~~lLGrViD~~G~plD~~~~~ 102 (422)
T TIGR02546 80 VGEALLGRVLDGFGRPLDGKGEL 102 (422)
T ss_pred eChhhccCEeCCCCCcccCCCCC
Confidence 99999999999999999998764
No 18
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=99.89 E-value=5.7e-23 Score=173.37 Aligned_cols=99 Identities=83% Similarity=1.243 Sum_probs=91.3
Q ss_pred eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCccc-CCcEEEEcCCeeeEeCC
Q psy5598 27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDA-KNTVCEFTGDILRTPVS 105 (128)
Q Consensus 27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~-G~~~V~~tg~~~~Vpvg 105 (128)
+|++|++|.|+++++.|++.+++||+|.|...++....|||++|+++.+.+|||++++||++ | +.|++++++++||||
T Consensus 1 ~y~~v~~i~G~~i~~~g~~~~~~Ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~~~gi~~~g-~~V~~t~~~~~v~vg 79 (466)
T TIGR01040 1 EYRTVSGVNGPLVILDNVKFPRFAEIVNLTLPDGTVRSGQVLEVSGNKAVVQVFEGTSGIDAKK-TTCEFTGDILRTPVS 79 (466)
T ss_pred CCccceEEEccEEEEECCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCeEEEEEcCCCCCcccCC-CEEEECCCccEEEcC
Confidence 47899999999999999978999999999644454578999999999999999999999998 9 599999999999999
Q ss_pred CCCccceecCCcccccCCCCC
Q psy5598 106 EDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 106 ~~lLGRViD~lG~PlDg~~~~ 126 (128)
++|||||||++|+|||+++++
T Consensus 80 ~~lLGRVid~~G~piD~~~~~ 100 (466)
T TIGR01040 80 EDMLGRVFNGSGKPIDKGPPV 100 (466)
T ss_pred cccccCEECccccccCCCCCC
Confidence 999999999999999998764
No 19
>PRK06820 type III secretion system ATPase; Validated
Probab=99.89 E-value=1.7e-22 Score=169.99 Aligned_cols=113 Identities=16% Similarity=0.213 Sum_probs=101.4
Q ss_pred HHHHhHHHHhcccCCC--CceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCC
Q psy5598 8 ALRENVLAVTRDYISQ--PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSG 85 (128)
Q Consensus 8 ~~~~~~~~~~~~~~~~--~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~G 85 (128)
.+-+.+++++++|... +.+.+|+|++|.|.++++.+. .+++||+|.|.. ++ ..|||++|+++.+.++||+++.|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~G~v~~v~g~~~~~~~~-~~~~ge~~~i~~-~~--~~~eVv~~~~~~~~l~~~~~~~g 83 (440)
T PRK06820 8 RLTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLP-GVAQGELCRIEP-QG--MLAEVVSIEQEMALLSPFASSDG 83 (440)
T ss_pred HHHHHHHHHHHhcCCCCCceeEeeEEEEEECcEEEEEEC-CCCcCCEEEEec-CC--eEEEEEEEeCCeEEEEEccCccC
Confidence 3447788899998765 466789999999999999975 699999999953 33 79999999999999999999999
Q ss_pred cccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCC
Q psy5598 86 IDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCC 125 (128)
Q Consensus 86 i~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~ 125 (128)
|++| ++|+++|+++++|+|++|||||+|++|+|||++++
T Consensus 84 i~~g-~~v~~tg~~~~v~vg~~llGrv~d~~G~pld~~~~ 122 (440)
T PRK06820 84 LRCG-QWVTPLGHMHQVQVGADLAGRILDGLGAPIDGGPP 122 (440)
T ss_pred CCCC-CEEEECCCCcEEEechhhcCCEECccCCccCCCCC
Confidence 9999 59999999999999999999999999999999864
No 20
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=99.89 E-value=1.2e-22 Score=173.18 Aligned_cols=114 Identities=22% Similarity=0.324 Sum_probs=103.3
Q ss_pred HHHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598 8 ALRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI 86 (128)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi 86 (128)
...+-+++.+++|+..+. +.+|+|++|.|++++++|+.++++||+|+|. ++ ..|||++++++.+.+++|+++.|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~ii~v~g~~~~~~ge~~~i~--~~--~~g~Vi~~~~~~~~~~~~~~~~gi 81 (501)
T TIGR00962 6 EISELIKQEIKNFEKDIEMEEVGTVVSVGDGIARVYGLENVMSGELIEFE--GG--VQGIALNLEEDSVGAVIMGDYSNI 81 (501)
T ss_pred HHHHHHHHHHHhcCCcceeEEEEEEEEEeCCEEEEECCcCCCCCCEEEEC--CC--eEEEEEEecCCeEEEEEecCCcCC
Confidence 344678888899987754 4689999999999999999789999999994 44 789999999999999999999999
Q ss_pred ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+.| +.|.++|++++||+|++|||||+|++|+|||+++++
T Consensus 82 ~~G-~~V~~tg~~~~v~vg~~llGRV~d~~G~pld~~~~~ 120 (501)
T TIGR00962 82 REG-STVKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPI 120 (501)
T ss_pred CCC-CeeEecCCccEEecChHhcCCEeCCCCCeeCCCCCc
Confidence 999 599999999999999999999999999999998764
No 21
>PRK06315 type III secretion system ATPase; Provisional
Probab=99.89 E-value=1.4e-22 Score=170.59 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=92.3
Q ss_pred CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeE
Q psy5598 23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRT 102 (128)
Q Consensus 23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~V 102 (128)
.+.+.+|+|++|.|+++++.|+ .+++||+|.|...++..+.|||++|+++.+.++||+++.||++| ++|.++|++++|
T Consensus 19 ~~~~~~G~v~~i~g~~~~~~~~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~V~~~g~~~~v 96 (442)
T PRK06315 19 QLTTVVGRITEVVGMLIKAVVP-DVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS-SEVIPTGLPLHI 96 (442)
T ss_pred CcceeccEEEEEECCEEEEEEC-CcccCCEEEEecCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCC-CEEEeCCCccEE
Confidence 6677899999999999999987 59999999996433225899999999999999999999999999 599999999999
Q ss_pred eCCCCCccceecCCcccccC--CCCC
Q psy5598 103 PVSEDMLGRVFNGSGKPIDK--DCCS 126 (128)
Q Consensus 103 pvg~~lLGRViD~lG~PlDg--~~~~ 126 (128)
|+|++|||||+|++|+|||+ ++++
T Consensus 97 ~vg~~llGrv~d~~G~pld~~~~~~~ 122 (442)
T PRK06315 97 RAGNGLLGRVLNGLGEPIDTETKGPL 122 (442)
T ss_pred EecccccCCEEeccCcccccccCCCc
Confidence 99999999999999999998 6553
No 22
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=99.89 E-value=8.9e-23 Score=172.45 Aligned_cols=99 Identities=51% Similarity=0.821 Sum_probs=90.7
Q ss_pred eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcE-EEEcCCeeeEeCC
Q psy5598 27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTV-CEFTGDILRTPVS 105 (128)
Q Consensus 27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~-V~~tg~~~~Vpvg 105 (128)
+|++|++|.|++++++|+.++++||+|.|...++....|||++|+++.+.+|||+++.||+.|+ . |.+||++++||||
T Consensus 1 ~y~~v~~i~g~iv~v~g~~~~~~ge~~~i~~~~~~~~~geVv~~~~~~~~l~~~~~t~gi~~g~-~~V~~tg~~~~v~vg 79 (458)
T TIGR01041 1 EYSTITEIAGPLVFVEGVEPVAYNEIVEIETPDGEKRRGQVLDSSEGLAVVQVFEGTTGLDPTG-TKVRFTGETLKLPVS 79 (458)
T ss_pred CccEEEEEEccEEEEEccCCCCcCCEEEEEcCCCcEEEEEEEEEECCEEEEEEecCCcCcCCCC-cEEEECCCceEEEcC
Confidence 4899999999999999997899999999953344447899999999999999999999999995 6 9999999999999
Q ss_pred CCCccceecCCcccccCCCCC
Q psy5598 106 EDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 106 ~~lLGRViD~lG~PlDg~~~~ 126 (128)
++|||||+|++|+|||+++++
T Consensus 80 ~~lLGRViD~~G~plD~~~~~ 100 (458)
T TIGR01041 80 EDMLGRILNGSGEPIDGGPEI 100 (458)
T ss_pred hhhccCEEccCCcccCCCCCC
Confidence 999999999999999998764
No 23
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=99.89 E-value=2e-22 Score=169.25 Aligned_cols=98 Identities=34% Similarity=0.564 Sum_probs=90.4
Q ss_pred eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCC
Q psy5598 26 ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVS 105 (128)
Q Consensus 26 ~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg 105 (128)
..||+|++|.|+++++++. .+++||+|.|...++ ...+||++|+++.+.+++|++++||+.| ++|.++|++++||||
T Consensus 3 ~~~g~v~~i~G~~v~v~~~-~~~~ge~~~i~~~~~-~~~geVi~~~~~~v~~~~~~~t~Gl~~g-~~V~~tg~~~~vpvg 79 (436)
T PRK02118 3 KIYTKITDITGNVITVEAE-GVGYGELATVERKDG-SSLAQVIRLDGDKVTLQVFGGTRGISTG-DEVVFLGRPMQVTYS 79 (436)
T ss_pred ceeEEEEEEECcEEEEEeC-CCCCCCEEEEEcCCC-CEEEEEEEEcCCEEEEEEecCCcCCCCC-CEEEeCCCceEEEcC
Confidence 4699999999999999995 699999999975444 4789999999999999999999999999 599999999999999
Q ss_pred CCCccceecCCcccccCCCCC
Q psy5598 106 EDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 106 ~~lLGRViD~lG~PlDg~~~~ 126 (128)
++|||||||++|+|||++|++
T Consensus 80 ~~lLGRV~d~~G~PiD~~~~~ 100 (436)
T PRK02118 80 ESLLGRRFNGSGKPIDGGPEL 100 (436)
T ss_pred ccccCCEEccCCcccCCCCCC
Confidence 999999999999999988764
No 24
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=99.88 E-value=2.6e-22 Score=168.04 Aligned_cols=97 Identities=23% Similarity=0.319 Sum_probs=88.9
Q ss_pred eEEEEEECCEEEEEcCCCC-CcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCC
Q psy5598 29 KTVSGVNGPLVILDEVKFP-KYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSED 107 (128)
Q Consensus 29 G~V~~I~G~~i~v~g~~~~-~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~ 107 (128)
|+|++|.|++++++|+..+ ++||+|.|...++....|||++|+++.+.++||++++||++| +.|++++++++||+|++
T Consensus 1 G~v~~v~g~~~~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~~~gi~~G-~~V~~tg~~~~i~vg~~ 79 (418)
T TIGR03498 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLG-CAVFAREGPLAVRPHPS 79 (418)
T ss_pred CEEEEEECcEEEEEcCCCccCCCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCC-CEEEECCCccEEEeChh
Confidence 7999999999999998753 999999996434435899999999999999999999999999 59999999999999999
Q ss_pred CccceecCCcccccCCCCC
Q psy5598 108 MLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 108 lLGRViD~lG~PlDg~~~~ 126 (128)
|||||+|++|+|||+++++
T Consensus 80 lLGRViD~lG~plD~~~~~ 98 (418)
T TIGR03498 80 WLGRVINALGEPIDGKGPL 98 (418)
T ss_pred hcCCEECCCCCccCCCCCC
Confidence 9999999999999998764
No 25
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=99.88 E-value=3e-22 Score=167.44 Aligned_cols=96 Identities=22% Similarity=0.332 Sum_probs=89.1
Q ss_pred eEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCCC
Q psy5598 29 KTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDM 108 (128)
Q Consensus 29 G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~l 108 (128)
|+|++|.|++++++|+ .+++||+|.|...++..+.|||++|+++.+.+++|+++.||++| +.|+++|++++||+|++|
T Consensus 1 G~v~~v~g~~v~v~g~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~t~gl~~G-~~V~~tg~~~~v~vg~~l 78 (411)
T TIGR03496 1 GRVTRVVGLVLEAVGL-RAPVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLRPG-ARVFPLEGPLRLPVGDSL 78 (411)
T ss_pred CEEEEEECcEEEEEeC-CCCcCCEEEEEcCCCCeEEEEEEEecCCEEEEEEccCccCCCCC-CEEEECCCccEEEcchhh
Confidence 7999999999999998 79999999996434545899999999999999999999999999 599999999999999999
Q ss_pred ccceecCCcccccCCCCC
Q psy5598 109 LGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 109 LGRViD~lG~PlDg~~~~ 126 (128)
||||+|++|+|||+++++
T Consensus 79 lGrVid~~G~pld~~~~~ 96 (411)
T TIGR03496 79 LGRVIDGLGRPLDGKGPL 96 (411)
T ss_pred cCCEECCCCCCcCCCCCC
Confidence 999999999999998764
No 26
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=99.88 E-value=3.8e-22 Score=166.87 Aligned_cols=96 Identities=22% Similarity=0.312 Sum_probs=88.6
Q ss_pred eEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCCC
Q psy5598 29 KTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDM 108 (128)
Q Consensus 29 G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~l 108 (128)
|+|++|.|++|++.|+ .+++||+|.|...++..+.+||++|.++.+.++||+++.||+.| ++|.++|++++||+|++|
T Consensus 1 G~V~~i~G~~i~v~~~-~~~ige~~~i~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G-~~V~~tg~~~~vpvg~~l 78 (413)
T TIGR03497 1 GKVTRVIGLTIESKGP-KAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGPG-SLVIATGRPLAIKVGKGL 78 (413)
T ss_pred CeEEEEECCEEEEEeC-CCCcCCEEEEEeCCCCeEEEEEEEEcCCeEEEEEccCccCCCCC-CEEEEcCCeeEEEcchhh
Confidence 7999999999999997 69999999996433445899999999999999999999999999 599999999999999999
Q ss_pred ccceecCCcccccCCCCC
Q psy5598 109 LGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 109 LGRViD~lG~PlDg~~~~ 126 (128)
||||+|++|+|||+++++
T Consensus 79 LGRVid~~G~plD~~~~~ 96 (413)
T TIGR03497 79 LGRVLDGLGRPLDGEGPI 96 (413)
T ss_pred cCCEEcCCCCcccCCCCC
Confidence 999999999999988764
No 27
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=99.88 E-value=5.9e-22 Score=166.84 Aligned_cols=100 Identities=22% Similarity=0.310 Sum_probs=91.2
Q ss_pred CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCC-CceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeee
Q psy5598 23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLND-GSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILR 101 (128)
Q Consensus 23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~-~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~ 101 (128)
.+.+.+|+|++|.|+++++.|. .+++||+|.|...+ +..+.|||++|+++.+.++||+++.||++| ++|+++|++++
T Consensus 19 ~~~~~~G~v~~i~G~~v~~~~~-~~~~ge~~~i~~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G-~~V~~tg~~~~ 96 (440)
T TIGR01026 19 RLVKRVGRVTKVKGLLIEAVGP-QASVGDLCLIERRGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPG-SKVLATGEGLS 96 (440)
T ss_pred CccceeeEEEEEEeeEEEEEcC-CCCcCCEEEEeecCCCCcEEEEEEEecCCEEEEEEccCCcCCCCC-CEEEeCCCccE
Confidence 6677899999999999999986 69999999996321 223899999999999999999999999999 59999999999
Q ss_pred EeCCCCCccceecCCcccccCCC
Q psy5598 102 TPVSEDMLGRVFNGSGKPIDKDC 124 (128)
Q Consensus 102 Vpvg~~lLGRViD~lG~PlDg~~ 124 (128)
||+|++|||||||++|+|||+++
T Consensus 97 v~vg~~llGRVid~~G~plD~~~ 119 (440)
T TIGR01026 97 IKVGDGLLGRVLDGLGKPIDGKG 119 (440)
T ss_pred EEcChhhhhceecCCCcccCCCC
Confidence 99999999999999999999887
No 28
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=99.87 E-value=7.9e-22 Score=165.72 Aligned_cols=97 Identities=23% Similarity=0.307 Sum_probs=89.1
Q ss_pred CceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598 24 PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP 103 (128)
Q Consensus 24 ~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp 103 (128)
+.+.+|+|++|.|+++++.+. ++++||+|.|.. ++ ..|||++|+++.+.++||+++.||+.| ++|+++|++++||
T Consensus 18 ~~~~~G~v~~v~g~~~~~~~~-~~~~ge~~~i~~-~~--~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~V~~tg~~~~v~ 92 (433)
T PRK07594 18 GYCRWGRIQDVSATLLNAWLP-GVFMGELCCIKP-GE--ELAEVVGINGSKALLSPFTSTIGLHCG-QQVMALRRRHQVP 92 (433)
T ss_pred ccceeeEEEEEECCEEEEEEC-CcCCCCEEEEec-CC--eEEEEEEEcCCeEEEEEccCCcCCCCC-CEEEeCCCccEEE
Confidence 345689999999999999975 699999999953 33 789999999999999999999999999 5999999999999
Q ss_pred CCCCCccceecCCcccccCCCC
Q psy5598 104 VSEDMLGRVFNGSGKPIDKDCC 125 (128)
Q Consensus 104 vg~~lLGRViD~lG~PlDg~~~ 125 (128)
+|++|||||+|++|+|||++++
T Consensus 93 vg~~llGrVid~~G~pld~~~~ 114 (433)
T PRK07594 93 VGEALLGRVIDGFGRPLDGREL 114 (433)
T ss_pred eChhhccCEEcccCCCcCCCCC
Confidence 9999999999999999998865
No 29
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.87 E-value=1.3e-21 Score=164.37 Aligned_cols=99 Identities=12% Similarity=0.207 Sum_probs=91.1
Q ss_pred CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeE
Q psy5598 23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRT 102 (128)
Q Consensus 23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~V 102 (128)
.+.+.+|+|++|.|.++++.|+ ++++||+|.|. ++ .+.|||++|+++.+.++||+++.||++| ++|.+++++++|
T Consensus 17 ~~~~~~g~v~~~~g~~~~~~g~-~~~ige~~~i~--~~-~~~~eV~~~~~~~~~~~~~~~~~gi~~g-~~v~~~~~~~~v 91 (432)
T PRK06793 17 PFYTKVGKVHSVQEQFFVAKGP-KAKIGDVCFVG--EH-NVLCEVIAIEKENNMLLPFEQTEKVCYG-DSVTLIAEDVVI 91 (432)
T ss_pred CccceeeEEEEEEEEEEEEEcC-CCCcCCEEEEC--CC-CEEEEEEEecCCcEEEEEccCccCCCCC-CEEEECCCccEE
Confidence 5667799999999999999997 69999999993 33 3799999999999999999999999999 599999999999
Q ss_pred eCCCCCccceecCCcccccCCCCC
Q psy5598 103 PVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 103 pvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
|||++|||||+|++|+|+|+++++
T Consensus 92 ~vg~~~lGrV~d~~G~piD~~~~~ 115 (432)
T PRK06793 92 PRGNHLLGKVLSANGEVLNEEAEN 115 (432)
T ss_pred EcCHhhccCEECcCCccCCCCCCC
Confidence 999999999999999999987553
No 30
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=99.86 E-value=2.7e-21 Score=163.58 Aligned_cols=97 Identities=20% Similarity=0.262 Sum_probs=89.3
Q ss_pred eeEEEEEECCEEEEEcCCC--CCcCcEEEEEeCCCceEEEEEEEE-eCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeC
Q psy5598 28 YKTVSGVNGPLVILDEVKF--PKYAEIVQLRLNDGSYRAGQVLEV-SGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPV 104 (128)
Q Consensus 28 ~G~V~~I~G~~i~v~g~~~--~~iGe~~~i~~~~~~~~~geVv~~-~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpv 104 (128)
+|+|++|.|++++++|+.+ +++||+|.|...++ .+.+||++| +++.+.++||+++.||+.| ++|.+++++++||+
T Consensus 3 ~G~V~~i~g~vi~v~g~~~~~~~ige~~~i~~~~~-~~~~eVv~~l~~~~v~l~~~~~~~gl~~G-~~V~~tg~~~~v~v 80 (461)
T PRK12597 3 IGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGG-PTLLEVKQHLDETTVRAIALGSTSGLARG-DEVRNTGGPIEVPV 80 (461)
T ss_pred ccEEEEEECcEEEEEECCCCCcCccCEEEEecCCC-cEEEEEEEEcCCCeEEEEEecCccCCCCC-CEEEeCCCceEEEc
Confidence 6999999999999999865 99999999964233 378999999 9999999999999999999 59999999999999
Q ss_pred CCCCccceecCCcccccCCCCC
Q psy5598 105 SEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 105 g~~lLGRViD~lG~PlDg~~~~ 126 (128)
|++|||||+|++|+|||+++++
T Consensus 81 g~~llGRVid~~G~plD~~~~~ 102 (461)
T PRK12597 81 GEAVLGRLLDVLGEPLDGGPPL 102 (461)
T ss_pred ChhhcCCEEeeccccccCCCCC
Confidence 9999999999999999998765
No 31
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=99.86 E-value=3.2e-21 Score=164.26 Aligned_cols=94 Identities=11% Similarity=0.119 Sum_probs=87.7
Q ss_pred EEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCCCc
Q psy5598 30 TVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDML 109 (128)
Q Consensus 30 ~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~lL 109 (128)
+|++|.|.++++.|+.++++||+|++. ++....|+|++++++.+.+++|+++.||+.| ++|.+||++++||||++||
T Consensus 4 ~V~~v~~~i~~v~Gl~~~~~ge~~~~~--~~~~~~g~V~~~~~~~v~~~~l~~~~gi~~G-~~V~~tg~~~~vpvg~~lL 80 (507)
T PRK07165 4 KIKSIFDYIVEVKGEYDYQQNQFFTLK--NNPNVKAFVISATEDKAYLLINNEKGKIKIN-DELIELNNTNKVKTSKEYF 80 (507)
T ss_pred EEEEEeceEEEEEcccCCCcCCEEEEC--CCCeEEEEEEEEeCCeEEEEEccCccCCCCC-CEEEECCCccEEECCcccc
Confidence 789999999999999889999999994 2334899999999999999999999999999 5999999999999999999
Q ss_pred cceecCCcccccCCCCC
Q psy5598 110 GRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 110 GRViD~lG~PlDg~~~~ 126 (128)
|||+|++|+|||+++++
T Consensus 81 GRVvd~lG~piDg~g~i 97 (507)
T PRK07165 81 GKIIDIDGNIIYPEAQN 97 (507)
T ss_pred CCEECCCCcccCCCCCC
Confidence 99999999999998854
No 32
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=99.86 E-value=2.5e-21 Score=164.24 Aligned_cols=96 Identities=28% Similarity=0.342 Sum_probs=90.2
Q ss_pred eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCC
Q psy5598 26 ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVS 105 (128)
Q Consensus 26 ~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg 105 (128)
..+|+|++|.|+++++.|+.++++||+|.|. ++ ..|+|++|+++.+.+++|+++.||+.| +.|+++|++++||+|
T Consensus 5 ~~~G~V~~v~~~ii~v~Gl~~~~~ge~~~i~--~~--~~g~vi~~~~~~v~~~~l~~~~gi~~G-~~V~~tg~~~~vpvg 79 (485)
T CHL00059 5 VNTGTVLQVGDGIARIYGLDEVMAGELVEFE--DG--TIGIALNLESNNVGVVLMGDGLMIQEG-SSVKATGKIAQIPVS 79 (485)
T ss_pred eeeEEEEEEeccEEEEeccccCCcCCEEEEC--CC--CEEEEEEEcCCEEEEEEeeCCCCCCCC-CEEEECCCcceEEcC
Confidence 4589999999999999999789999999994 44 689999999999999999999999999 599999999999999
Q ss_pred CCCccceecCCcccccCCCCC
Q psy5598 106 EDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 106 ~~lLGRViD~lG~PlDg~~~~ 126 (128)
++|||||+|++|+|||+++++
T Consensus 80 ~~llGRVvd~lG~piDg~~~~ 100 (485)
T CHL00059 80 EAYLGRVVNALAKPIDGKGEI 100 (485)
T ss_pred HhhcCCEECCCCCeeCCCCCc
Confidence 999999999999999998765
No 33
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=99.86 E-value=3.2e-21 Score=163.05 Aligned_cols=99 Identities=24% Similarity=0.333 Sum_probs=88.7
Q ss_pred eeeEEEEEECCEEEEEcCC--CCCcCcEEEEEeCCCceEEEEEEE-EeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598 27 TYKTVSGVNGPLVILDEVK--FPKYAEIVQLRLNDGSYRAGQVLE-VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP 103 (128)
Q Consensus 27 ~~G~V~~I~G~~i~v~g~~--~~~iGe~~~i~~~~~~~~~geVv~-~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp 103 (128)
.+|+|++|.|+++++.|+. .+++||+|.|...++....|||++ |+++.+.++||+++.||++| ++|.+++++++||
T Consensus 2 ~~G~V~~i~g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G-~~V~~tg~~~~v~ 80 (463)
T PRK09280 2 NTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRG-MEVIDTGAPISVP 80 (463)
T ss_pred CccEEEEEEccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCC-CEEEeCCCceEEE
Confidence 3799999999999999973 259999999952223358999999 99999999999999999999 5999999999999
Q ss_pred CCCCCccceecCCcccccCCCCC
Q psy5598 104 VSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 104 vg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+|++|||||+|++|+|||+++++
T Consensus 81 vg~~lLGRViD~~G~pld~~~~~ 103 (463)
T PRK09280 81 VGKATLGRIFNVLGEPIDEKGPI 103 (463)
T ss_pred cChhhcCCEEeeeccccCCCCCc
Confidence 99999999999999999998764
No 34
>PRK08149 ATP synthase SpaL; Validated
Probab=99.86 E-value=4.1e-21 Score=161.21 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=88.7
Q ss_pred CceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCC-CceEE--EEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCee
Q psy5598 24 PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLND-GSYRA--GQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDIL 100 (128)
Q Consensus 24 ~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~-~~~~~--geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~ 100 (128)
..+.+|+|++|.|++++++++ .+++||+|+|...+ +..+. |||++|+++.+++|||+++.|++.| ++|.++++++
T Consensus 3 ~~~~~g~v~~i~g~~i~~~~~-~~~~ge~~~i~~~~~~~~~~~~~evv~~~~~~~~l~~~~~~~gi~~g-~~v~~~~~~~ 80 (428)
T PRK08149 3 LLQRLAHPLRIQGPIIEAELP-DVAIGEICEIRAGWHSNEVIARAQVVGFQRERTILSLIGNAQGLSRQ-VVLKPTGKPL 80 (428)
T ss_pred ceeeeeEEEEEEeeEEEEEEC-CCCcCCEEEEeecCCCCceeeEEEEEEeeCcEEEEEECCCccCCCCC-CEEEEcCCcC
Confidence 345689999999999999986 69999999995421 12245 8999999999999999999999999 5999999999
Q ss_pred eEeCCCCCccceecCCcccccCCC
Q psy5598 101 RTPVSEDMLGRVFNGSGKPIDKDC 124 (128)
Q Consensus 101 ~Vpvg~~lLGRViD~lG~PlDg~~ 124 (128)
+||+|++|||||+|++|+|||+++
T Consensus 81 ~v~vg~~llGrv~d~~G~piD~~~ 104 (428)
T PRK08149 81 SVWVGEALLGAVLDPTGKIVERFD 104 (428)
T ss_pred EEEeChhhcCCeeCCCCCCcCCCC
Confidence 999999999999999999999876
No 35
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=99.86 E-value=2.6e-21 Score=166.76 Aligned_cols=92 Identities=30% Similarity=0.514 Sum_probs=86.5
Q ss_pred eEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCCC
Q psy5598 29 KTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDM 108 (128)
Q Consensus 29 G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~l 108 (128)
|+|.+|+|++++++|+.++++||+|+|. + +.+.|||++|+++.+.+|+|++++||++|+ +|++||++++|++|++|
T Consensus 2 G~I~~V~Gpvv~a~g~~~~~~gE~v~v~--~-~~l~gEVi~~~~d~a~iqvye~t~Gl~~G~-~V~~tg~plsV~lGpgl 77 (578)
T TIGR01043 2 GRIIRVSGPLVVADGMKGAQMYEVVKVG--E-EGLIGEIIRIEGDKAFIQVYEETSGIKPGE-PVVGTGAPLSVELGPGL 77 (578)
T ss_pred CEEEEEECCEEEEecCCCCCcCCEEEEC--C-CcEEEEEEEEcCCeEEEEECCCCCCCCCCC-EEEECCCccEEEcCHHH
Confidence 8999999999999999779999999994 2 248999999999999999999999999995 99999999999999999
Q ss_pred ccceecCCcccccCCC
Q psy5598 109 LGRVFNGSGKPIDKDC 124 (128)
Q Consensus 109 LGRViD~lG~PlDg~~ 124 (128)
||||||++|+|||+.+
T Consensus 78 LGrV~DgigrPLd~~~ 93 (578)
T TIGR01043 78 LGSIYDGVQRPLDVLK 93 (578)
T ss_pred hcceeccCCccccCcc
Confidence 9999999999999863
No 36
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=99.85 E-value=4.6e-21 Score=165.44 Aligned_cols=94 Identities=32% Similarity=0.576 Sum_probs=88.2
Q ss_pred eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCC
Q psy5598 27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSE 106 (128)
Q Consensus 27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~ 106 (128)
.+|+|.+|+|++++++|+..+++||+|.|. +..+.|||++++++.+.+|+|++|+||++|+ +|.+||++++|++|+
T Consensus 3 ~~G~I~~V~Gpvv~~~~~~~~~~~E~v~v~---~~~l~gEVi~~~~d~a~iqv~e~T~Gl~~G~-~V~~tg~plsv~lGp 78 (586)
T PRK04192 3 TKGKIVRVSGPLVVAEGMGGARMYEVVRVG---EEGLIGEIIRIEGDKATIQVYEETSGIKPGE-PVEFTGEPLSVELGP 78 (586)
T ss_pred ceeEEEEEECcEEEEEeCCCCCccCEEEEC---CCcEEEEEEEEeCCceEEEEecCCcCCCCCC-EEEeCCCccEEEcCH
Confidence 479999999999999999779999999994 2348999999999999999999999999995 999999999999999
Q ss_pred CCccceecCCcccccCCC
Q psy5598 107 DMLGRVFNGSGKPIDKDC 124 (128)
Q Consensus 107 ~lLGRViD~lG~PlDg~~ 124 (128)
+|||||||++|+|||+.+
T Consensus 79 glLGrv~Dg~grPLd~~~ 96 (586)
T PRK04192 79 GLLGSIFDGIQRPLDELA 96 (586)
T ss_pred HhcCCeecCCCCcccccc
Confidence 999999999999999875
No 37
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=99.85 E-value=3e-21 Score=166.29 Aligned_cols=94 Identities=27% Similarity=0.500 Sum_probs=87.8
Q ss_pred eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCC
Q psy5598 27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSE 106 (128)
Q Consensus 27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~ 106 (128)
++|+|.+|+|++++++|++++++||+|+|. ++ .+.|||++|+++.+.+|+|+++.||++|+ +|.+||++++|++||
T Consensus 1 ~~G~V~~v~G~vV~a~g~~~~~~gE~v~v~--~~-~l~gEVI~l~~d~a~iq~ye~t~Gl~~G~-~V~~tg~~lsv~lGp 76 (591)
T TIGR01042 1 EYGYIYKVSGPVVVAENMAGAAMYELVRVG--HD-ELVGEIIRLEGDKATIQVYEETSGLTVGD-PVLRTGKPLSVELGP 76 (591)
T ss_pred CceEEEEEECCEEEEecCCCCCcCCEEEEC--CC-ceEEEEEEEcCCeEEEEEccCccCCCCCC-EEEeCCCccEEEcCH
Confidence 379999999999999999889999999994 22 38999999999999999999999999995 999999999999999
Q ss_pred CCccceecCCcccccCCC
Q psy5598 107 DMLGRVFNGSGKPIDKDC 124 (128)
Q Consensus 107 ~lLGRViD~lG~PlDg~~ 124 (128)
+|||||+|++|||||+.+
T Consensus 77 glLG~V~DgigrPLd~~~ 94 (591)
T TIGR01042 77 GILGNIFDGIQRPLKAIA 94 (591)
T ss_pred HHhhcccCcCCCchHHHH
Confidence 999999999999999754
No 38
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=99.85 E-value=8.8e-21 Score=161.24 Aligned_cols=98 Identities=22% Similarity=0.303 Sum_probs=87.5
Q ss_pred eeeEEEEEECCEEEEEcCCCCCc---CcEEEEEeCC--Cc--eEEEEEEEEeC-CEEEEEEccCCCCcccCCcEEEEcCC
Q psy5598 27 TYKTVSGVNGPLVILDEVKFPKY---AEIVQLRLND--GS--YRAGQVLEVSG-SKAVVQVFEGTSGIDAKNTVCEFTGD 98 (128)
Q Consensus 27 ~~G~V~~I~G~~i~v~g~~~~~i---Ge~~~i~~~~--~~--~~~geVv~~~~-~~v~l~~~~~~~Gi~~G~~~V~~tg~ 98 (128)
.+|+|++|.|.+|++.|+. +++ ||+|.+...+ +. .+.+||++|.+ +.+.++||++++||+.| ++|.++++
T Consensus 15 ~~G~V~~v~G~viev~~~~-~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G-~~V~~tg~ 92 (494)
T CHL00060 15 NLGRITQIIGPVLDVAFPP-GKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRG-MEVIDTGA 92 (494)
T ss_pred cceEEEEEEccEEEEEecC-CCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCC-CEEEeCCC
Confidence 4799999999999999974 555 9999995322 21 47899999998 99999999999999999 59999999
Q ss_pred eeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 99 ILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 99 ~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+++||+|++|||||+|++|+|||+++++
T Consensus 93 ~~~vpvg~~lLGRVid~~G~piDg~~~~ 120 (494)
T CHL00060 93 PLSVPVGGATLGRIFNVLGEPVDNLGPV 120 (494)
T ss_pred cceeecchhhcCCEEeecCcccCCCCCC
Confidence 9999999999999999999999998764
No 39
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=99.84 E-value=1.2e-20 Score=159.49 Aligned_cols=97 Identities=24% Similarity=0.269 Sum_probs=88.1
Q ss_pred eeEEEEEECCEEEEEcCCCCCcCcEE---EEEeCCCceEEEEEEE-EeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598 28 YKTVSGVNGPLVILDEVKFPKYAEIV---QLRLNDGSYRAGQVLE-VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP 103 (128)
Q Consensus 28 ~G~V~~I~G~~i~v~g~~~~~iGe~~---~i~~~~~~~~~geVv~-~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp 103 (128)
+|+|++|.|.++++.|+ .+++||+| .|...++..+.+||++ |+++.+.++||+++.||+.| +.|.++++++++|
T Consensus 2 ~G~v~~v~g~~ie~~~~-~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G-~~V~~t~~~~~i~ 79 (461)
T TIGR01039 2 KGKVVQVIGPVVDVEFE-QGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRG-LEVIDTGAPISVP 79 (461)
T ss_pred ccEEEEEEeeEEEEEEC-CCCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCC-CEEEeCCCceEEE
Confidence 69999999999999997 59999999 8843233248899999 99999999999999999999 5999999999999
Q ss_pred CCCCCccceecCCcccccCCCCC
Q psy5598 104 VSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 104 vg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+|++|||||+|++|+|||+++++
T Consensus 80 vg~~lLGRViD~~G~pid~~~~~ 102 (461)
T TIGR01039 80 VGKETLGRIFNVLGEPIDEKGPI 102 (461)
T ss_pred cChhhcCCEEccCCcccCCCCCC
Confidence 99999999999999999998654
No 40
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=99.83 E-value=3.2e-20 Score=154.16 Aligned_cols=103 Identities=55% Similarity=0.881 Sum_probs=98.1
Q ss_pred CceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598 24 PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP 103 (128)
Q Consensus 24 ~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp 103 (128)
..+.|-+|++|.|+++.|++..++++||+++|..++|+...++|+.++.+.+++|+|+.|.|+...++.|+|+|++++++
T Consensus 3 ~~~~Y~~i~~i~Gplv~ve~~eg~~y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~ 82 (463)
T COG1156 3 MVKEYTTISEIKGPLIIVEGVEGASYGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIP 82 (463)
T ss_pred ccceeeeEEEeccceEEEecccCCCcceEEEEECCCCCeeeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEEe
Confidence 45679999999999999999999999999999999998899999999999999999999999999986799999999999
Q ss_pred CCCCCccceecCCcccccCCCCC
Q psy5598 104 VSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 104 vg~~lLGRViD~lG~PlDg~~~~ 126 (128)
++++||||+||++|+|||++|.+
T Consensus 83 vs~dllGRifnG~G~PiDggp~i 105 (463)
T COG1156 83 VSEDLLGRIFNGSGKPIDGGPEI 105 (463)
T ss_pred ecHHhhhhhhcCCCCcCCCCCcC
Confidence 99999999999999999999875
No 41
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=99.82 E-value=3.9e-20 Score=167.86 Aligned_cols=92 Identities=30% Similarity=0.507 Sum_probs=85.9
Q ss_pred eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCC
Q psy5598 27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSE 106 (128)
Q Consensus 27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~ 106 (128)
.+|+|++|+|++|+++|+..+++||+|.|. ++ .+.|||++|+++.+++|||+++.|+++| ++|+++|++++|++|+
T Consensus 3 ~~G~V~~V~G~lv~a~g~~~~~iGE~v~I~--~~-~l~gEVIg~~~d~a~iq~~e~t~Gl~~G-~~V~~tg~~l~V~lG~ 78 (1017)
T PRK14698 3 AKGRIIRVTGPLVIADGMKGAKMYEVVRVG--EL-GLIGEIIRLEGDKAVIQVYEETAGLKPG-EPVEGTGSSLSVELGP 78 (1017)
T ss_pred CceEEEEEEcCEEEEecCcCCCCCCEEEEC--CC-cEEEEEEEEeCCEEEEEECCCCCCCCCC-CEEEEcCCcceeecCH
Confidence 379999999999999998779999999994 33 3899999999999999999999999999 5999999999999999
Q ss_pred CCccceecCCcccccC
Q psy5598 107 DMLGRVFNGSGKPIDK 122 (128)
Q Consensus 107 ~lLGRViD~lG~PlDg 122 (128)
+||||||||+|+||+.
T Consensus 79 ~LLGRV~DGlGrPL~~ 94 (1017)
T PRK14698 79 GLLTSIYDGIQRPLEV 94 (1017)
T ss_pred HHhhcccCCCCChHHH
Confidence 9999999999999973
No 42
>PTZ00185 ATPase alpha subunit; Provisional
Probab=99.81 E-value=2.8e-19 Score=152.91 Aligned_cols=97 Identities=19% Similarity=0.344 Sum_probs=88.7
Q ss_pred eeeeEEEEEECCEEEE---EcCCCCCcCcEEEEEeCCCceEEEEEEEEeCC-EEEEEEccCCCCcccCCcEEEEcCCeee
Q psy5598 26 ITYKTVSGVNGPLVIL---DEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGS-KAVVQVFEGTSGIDAKNTVCEFTGDILR 101 (128)
Q Consensus 26 ~~~G~V~~I~G~~i~v---~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~-~v~l~~~~~~~Gi~~G~~~V~~tg~~~~ 101 (128)
.+.|+|.+|.|++..+ .|++++.+||++++..++++...|+|..++++ .+.+++|++++||+.|+ .|.+||++++
T Consensus 38 ~~~G~V~~v~~gia~v~~v~Gl~~~~~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~~G~-~V~~tg~~~~ 116 (574)
T PTZ00185 38 EMIGYVHSIDGTIATLIPAPGNPGVAYNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQ-KVMATGKLLY 116 (574)
T ss_pred eeeEEEEEEcCeEEEEeecCCCcccccCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCCCCC-EEEECCCccE
Confidence 3589999998879995 89999999999999754444468999999999 79999999999999995 9999999999
Q ss_pred EeCCCCCccceecCCcccccCC
Q psy5598 102 TPVSEDMLGRVFNGSGKPIDKD 123 (128)
Q Consensus 102 Vpvg~~lLGRViD~lG~PlDg~ 123 (128)
||||++|||||+|++|+|||++
T Consensus 117 VpVG~~lLGRVvD~lG~PIDg~ 138 (574)
T PTZ00185 117 IPVGAGVLGKVVNPLGHEVPVG 138 (574)
T ss_pred EECCcccccCEECCCCcccCCC
Confidence 9999999999999999999987
No 43
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=99.80 E-value=2.5e-19 Score=151.14 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=86.8
Q ss_pred eEEEEEECCEEEEEcCC-CCCcCcEEEEEeCCCceEEEEEEE-EeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCC
Q psy5598 29 KTVSGVNGPLVILDEVK-FPKYAEIVQLRLNDGSYRAGQVLE-VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSE 106 (128)
Q Consensus 29 G~V~~I~G~~i~v~g~~-~~~iGe~~~i~~~~~~~~~geVv~-~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~ 106 (128)
|+|++|.|+++++++.. .+.+++.+.+.. +..+.+||++ |+++.+.++||++++||+.| +.|.++|++++||||+
T Consensus 1 G~i~~i~g~vvdv~f~~~~p~i~~~l~~~~--~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G-~~V~~tg~~~~VpVg~ 77 (449)
T TIGR03305 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGR--EGEVVVEVLSQLDAHHVRGIALTPTQGLARG-MPVRDSGGPLKAPVGK 77 (449)
T ss_pred CeEEEEEcCEEEEEeCCCCcchhheEEecC--CCcEEEeeeeEecCCeEEEEEccCcccCCCC-CEEEecCCceEEEcCh
Confidence 79999999999999853 499999988863 3458899998 99999999999999999999 5999999999999999
Q ss_pred CCccceecCCcccccCCCCC
Q psy5598 107 DMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 107 ~lLGRViD~lG~PlDg~~~~ 126 (128)
+|||||+|++|+|||+++++
T Consensus 78 ~lLGRVlD~~G~PiD~~~~~ 97 (449)
T TIGR03305 78 PTLSRMFDVFGNTIDRREPP 97 (449)
T ss_pred hhcCCEEccCccccCCCCCC
Confidence 99999999999999998764
No 44
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=99.78 E-value=1.7e-18 Score=145.25 Aligned_cols=115 Identities=23% Similarity=0.320 Sum_probs=105.6
Q ss_pred HHHHhHHHHhcccCCCC-ceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598 8 ALRENVLAVTRDYISQP-RITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI 86 (128)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi 86 (128)
...+-+.++++.|.... ....|+|++|.+.++++.|+.++..||++++. ++ +.|.+.+++++.+.+..+++...|
T Consensus 7 ei~~~i~~~i~~~~~~~~~~~~g~V~sv~DgIa~v~Gl~~~~~~E~~ef~--~~--v~G~alnle~d~VG~vi~g~~~~i 82 (504)
T COG0056 7 EISSLIKQQIENFDVEAEVKEVGTVISVGDGIARVSGLENVMAGELVEFP--GG--VKGMALNLEEDSVGAVILGDYSDI 82 (504)
T ss_pred HHHHHHHHHHHhcchhhhhhccceEEEEecceEEEecCchhhcCceEEec--CC--cEEEEEeccccceeEEEecCCccc
Confidence 46677888899998775 45789999999999999999999999999997 34 799999999999999999999999
Q ss_pred ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCCC
Q psy5598 87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCSD 127 (128)
Q Consensus 87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~~ 127 (128)
+.|| .|..||+.++||||++|+|||+|++|+|+||+++++
T Consensus 83 ~eG~-~v~~Tg~i~~Vpvg~~llGRVVn~lG~pidgkg~i~ 122 (504)
T COG0056 83 KEGD-EVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPID 122 (504)
T ss_pred cCCc-EEEeeCceEEEecchhhcceeecCCCCccCCCCCcc
Confidence 9995 999999999999999999999999999999998864
No 45
>KOG1351|consensus
Probab=99.72 E-value=2.4e-17 Score=133.87 Aligned_cols=115 Identities=77% Similarity=1.146 Sum_probs=107.9
Q ss_pred hHHHHhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCc
Q psy5598 12 NVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNT 91 (128)
Q Consensus 12 ~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~ 91 (128)
+..+..++|...+...|-+|..++|+++.......+++.|+|.+.-+||....|+|..++++++++++|+.|+||-...+
T Consensus 8 ~~~a~~~~~~~~prl~y~tv~gvngplvild~vkfp~y~eiv~ltlpdgt~r~gqvlev~g~kavvqvfegtsgid~k~t 87 (489)
T KOG1351|consen 8 HATAVIENYTTEPRLTYRTVSGVNGPLVILDKVKFPKYAEIVNLTLPDGSVRSGQVLEVSGEKAVVQVFEGTSGIDAKKT 87 (489)
T ss_pred HHHHHHhccccCCceeEeeecccCCceEEEecccccchhhheEEecCCCCeecceEEEecCCeeEEEEeccccccccccc
Confidence 55677899999999999999999999999998888999999999988888889999999999999999999999998878
Q ss_pred EEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 92 VCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 92 ~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
.+.|||+.++.||++++||||||+.|+|||.+|++
T Consensus 88 ~~eftg~~lr~pvsedmlgrifngsgkpid~gp~v 122 (489)
T KOG1351|consen 88 TVEFTGEILRTPVSEDMLGRIFNGSGKPIDKGPPV 122 (489)
T ss_pred eEEEecccccccccHHHhhhhhcCCCCccCCCCCc
Confidence 99999999999999999999999999999998874
No 46
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=99.70 E-value=4e-17 Score=138.99 Aligned_cols=91 Identities=24% Similarity=0.498 Sum_probs=86.1
Q ss_pred eeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCC
Q psy5598 28 YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSED 107 (128)
Q Consensus 28 ~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~ 107 (128)
.|+|.+|+|+++.++|..++.+.|+|.+. ...+.|||+.+++|++.+|+|++|.||++|+ +|.+||+|++|.+||+
T Consensus 2 ~G~i~~isGp~V~a~gm~~~~my~~v~Vg---~~~L~gEiI~i~gd~a~iQVyE~T~Gi~~Ge-~V~~Tg~pLsvELGPG 77 (588)
T COG1155 2 MGKIIRISGPVVVAEGMEGAKMYDVVKVG---EMGLIGEIIRIEGNRATIQVYEDTAGIRPGE-KVENTGRPLSVELGPG 77 (588)
T ss_pred CceEEEEECCEEEEecCcCCceEEEEEEc---CCceeEEEEEEeCCeEEEEEEeecCCCCCCC-eeecCCCceEEEeCcc
Confidence 69999999999999999999999999995 2348999999999999999999999999996 9999999999999999
Q ss_pred CccceecCCcccccC
Q psy5598 108 MLGRVFNGSGKPIDK 122 (128)
Q Consensus 108 lLGRViD~lG~PlDg 122 (128)
||+.|+||+.||||.
T Consensus 78 ll~~IyDGiQrPL~~ 92 (588)
T COG1155 78 LLKSIYDGIQRPLDV 92 (588)
T ss_pred HHhhhhhhccChHHH
Confidence 999999999999973
No 47
>KOG1352|consensus
Probab=99.52 E-value=2.5e-15 Score=125.56 Aligned_cols=93 Identities=26% Similarity=0.484 Sum_probs=86.8
Q ss_pred ceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeC
Q psy5598 25 RITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPV 104 (128)
Q Consensus 25 ~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpv 104 (128)
...||+|.+++|+++.+.+...++++|+|++.. ..+.|||+.+++|.+.+|+|++|+|+..|| +|..||+|++|.+
T Consensus 18 es~~G~v~~VSGPVV~a~~M~G~aMYELVrVGh---~~LvGEiIrlegD~aTIQVYEeTsG~tVgD-pvlrTgkPLsvEL 93 (618)
T KOG1352|consen 18 ESEYGRVYSVSGPVVVAENMAGCAMYELVRVGH---DELVGEIIRLEGDMATIQVYEETSGLTVGD-PVLRTGKPLSVEL 93 (618)
T ss_pred hhccceEEeccCceEehhcccchHHHHHHHcch---HhhhhheeEecCceeEEEEEeccCCcccCC-chhhcCCcceEee
Confidence 446999999999999999988899999999852 248999999999999999999999999996 9999999999999
Q ss_pred CCCCccceecCCccccc
Q psy5598 105 SEDMLGRVFNGSGKPID 121 (128)
Q Consensus 105 g~~lLGRViD~lG~PlD 121 (128)
||+++|.++|+..|||.
T Consensus 94 GPGimgsIfDGIQRPLk 110 (618)
T KOG1352|consen 94 GPGIMGSIFDGIQRPLK 110 (618)
T ss_pred CcchhhhhhhhhhhhHH
Confidence 99999999999999985
No 48
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=99.48 E-value=8.5e-14 Score=115.56 Aligned_cols=98 Identities=22% Similarity=0.282 Sum_probs=85.7
Q ss_pred eeEEEEEECCEEEEEcCC---CCCcCcEEEEEeCCCceEEEEEEEE-eCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598 28 YKTVSGVNGPLVILDEVK---FPKYAEIVQLRLNDGSYRAGQVLEV-SGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP 103 (128)
Q Consensus 28 ~G~V~~I~G~~i~v~g~~---~~~iGe~~~i~~~~~~~~~geVv~~-~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp 103 (128)
.|+|++|.|+++.+++.. .+.+++.+++...+...+..||..+ .++.+....++.++|+.+| ..|..||+|++||
T Consensus 3 ~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg-~~v~dtg~pi~VP 81 (468)
T COG0055 3 KGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRG-LEVIDTGKPISVP 81 (468)
T ss_pred CceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccC-cEEecCCCceEEe
Confidence 599999999999999862 3899999998753212478898865 6678889999999999999 5999999999999
Q ss_pred CCCCCccceecCCcccccCCCCC
Q psy5598 104 VSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 104 vg~~lLGRViD~lG~PlDg~~~~ 126 (128)
||+..||||+|.+|+|||+.+|+
T Consensus 82 VG~~~lgri~nvlG~~iD~~~~~ 104 (468)
T COG0055 82 VGKGTLGRIFNVLGEPIDEKGPI 104 (468)
T ss_pred cchhhcccchhccCCcccccCCC
Confidence 99999999999999999997765
No 49
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=99.32 E-value=1e-11 Score=79.34 Aligned_cols=66 Identities=33% Similarity=0.472 Sum_probs=57.7
Q ss_pred EEEEECCEEEEEcCCC--CCcCcEEEEEeCC-CceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcC
Q psy5598 31 VSGVNGPLVILDEVKF--PKYAEIVQLRLND-GSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTG 97 (128)
Q Consensus 31 V~~I~G~~i~v~g~~~--~~iGe~~~i~~~~-~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg 97 (128)
|++|.|+++++++... +.+++.+.++..+ +....|||++|+++.+.+|+|++++||++| ++|++||
T Consensus 1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~G-~~V~~tG 69 (69)
T PF02874_consen 1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFGNGVLGEVVGLDEDEVRLQVFGSTDGLSRG-TEVRFTG 69 (69)
T ss_dssp EEEEECTEEEEECSEEEEEETTTEEEEEEEEETTEEEEEEEEEETTEEEEEESSSGTTSBTT-CEEEEEE
T ss_pred CccccceEEEEEcCCCCCCCccEEEEEecccceeeeeeeecccCccEEEEEEecCCCCCCCC-CEEEcCc
Confidence 6899999999977665 7788888887443 456899999999999999999999999999 5999986
No 50
>KOG1353|consensus
Probab=99.28 E-value=1.5e-12 Score=103.69 Aligned_cols=98 Identities=23% Similarity=0.263 Sum_probs=90.9
Q ss_pred CceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598 24 PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP 103 (128)
Q Consensus 24 ~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp 103 (128)
...+.|+|.+|.+++..+.|+.++.-+|++++. +| +.+.-..+..+.+.+..|++..-++.|+ .|..|+....||
T Consensus 17 ~leEtgrVLsIGdGIArV~GL~nvQAeEmvEFs--sG--lKgmalnle~~~vg~v~~g~d~~ikeg~-~VkrTgaIvDVp 91 (340)
T KOG1353|consen 17 DLEETGRVLSIGDGIARVYGLTNVQAEEMVEFS--SG--LKGMALNLEGENVGVVVFGEDSLIKEGD-TVKRTAAISDVP 91 (340)
T ss_pred chhhccceEEEcCceeeeecccccchHHHHhhh--cc--ccchhccccCCceEEEEEcCcceeccCc-eEEeeeeeeccC
Confidence 445689999999999999999999999999986 35 6788889999999999999999999996 999999999999
Q ss_pred CCCCCccceecCCcccccCCCCC
Q psy5598 104 VSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 104 vg~~lLGRViD~lG~PlDg~~~~ 126 (128)
|++.|||||.|++|+|+||++++
T Consensus 92 vg~~LlgrvvdAlGn~idgkG~i 114 (340)
T KOG1353|consen 92 PLKALLGRVGCALGEPIDGNGKI 114 (340)
T ss_pred chHHHhhhhhhhhcCeecCCCCc
Confidence 99999999999999999999975
No 51
>KOG1350|consensus
Probab=99.23 E-value=7.9e-12 Score=102.75 Aligned_cols=100 Identities=21% Similarity=0.234 Sum_probs=86.7
Q ss_pred eeeeEEEEEECCEEEEEcCCC-CCcCcEEEEEeCCCceEEEEEEEE-eCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598 26 ITYKTVSGVNGPLVILDEVKF-PKYAEIVQLRLNDGSYRAGQVLEV-SGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP 103 (128)
Q Consensus 26 ~~~G~V~~I~G~~i~v~g~~~-~~iGe~~~i~~~~~~~~~geVv~~-~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp 103 (128)
...|+|..+.|.++.+.+..+ +.+-...++...+. .+..||.++ .++.+....++.|+|+.+| .+|..+|.|.+||
T Consensus 50 ~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~-~lvlEV~qhlG~n~VR~iAMdgTEGLvRG-~~VlDtG~Pi~ip 127 (521)
T KOG1350|consen 50 KNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDT-RLVLEVAQHLGENTVRTIAMDGTEGLVRG-QKVLDTGYPISIP 127 (521)
T ss_pred ccCCcEEEEEeeeEEEecCCCCcchhhceeecCCCc-eeeeHHHHHhCcCeEEEEEecCchhhhcC-cccccCCCceeee
Confidence 357999999999999998764 77777778875443 477888866 5677889999999999999 5999999999999
Q ss_pred CCCCCccceecCCcccccCCCCCC
Q psy5598 104 VSEDMLGRVFNGSGKPIDKDCCSD 127 (128)
Q Consensus 104 vg~~lLGRViD~lG~PlDg~~~~~ 127 (128)
||+..|||++|..|+|+|..+|++
T Consensus 128 VG~~tLGRI~NViGePiDerGpi~ 151 (521)
T KOG1350|consen 128 VGPETLGRIMNVIGEPIDERGPIK 151 (521)
T ss_pred cCHHHHhhHHHhcCCcccccCCcc
Confidence 999999999999999999998874
No 52
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.04 E-value=0.00034 Score=58.64 Aligned_cols=38 Identities=18% Similarity=0.035 Sum_probs=33.8
Q ss_pred CCCCcccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCC
Q psy5598 82 GTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKD 123 (128)
Q Consensus 82 ~~~Gi~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~ 123 (128)
...+|+.|| .|..++++ ++++.|||||+|++|+|+|+.
T Consensus 55 ~~~~l~~Gd-~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~ 92 (380)
T PRK12608 55 RRFNLRTGD-VVEGVARP---RERYRVLVRVDSVNGTDPEKL 92 (380)
T ss_pred HHhCCCCCC-EEEeccCC---CCChhheEEEeccCCcCchhc
Confidence 345899995 99999988 999999999999999998863
No 53
>PF09378 HAS-barrel: HAS barrel domain; InterPro: IPR018538 The HAS barrel is named after HerA-ATP Synthase. In ATP synthases, this domain is implicated in the assembly of the catalytic toroid and docking of accessory subunits, such as the subunit of the ATP synthase complex. Similar roles in docking of the functional partner, the NurA nuclease, and assembly of the HerA toroid complex appear likely for the HAS-barrel of the HerA family []. ; PDB: 3OAA_I.
Probab=92.82 E-value=0.35 Score=31.50 Aligned_cols=46 Identities=24% Similarity=0.235 Sum_probs=31.7
Q ss_pred eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCC
Q psy5598 27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGS 73 (128)
Q Consensus 27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~ 73 (128)
.+|..+. ....+.++....+++||.|.+...++..++|+|.++...
T Consensus 4 ViG~~s~-~~~~f~~~~~~~v~~GeyV~i~~~~~~~vlG~V~~i~~~ 49 (91)
T PF09378_consen 4 VIGETSS-NEFEFIVEPSKDVRVGEYVVIEYDDGEKVLGMVTSISRG 49 (91)
T ss_dssp --EEEEE-ETTEEEEEE-TT-BTTEEEEES----TTEEEEEEEEES-
T ss_pred ccCceeE-eeEEEEEeCCCCCCcCeEEEEEEechhhhhhhhheeEEc
Confidence 3566666 888888887667999999999865456799999999875
No 54
>cd01735 LSm12_N LSm12 belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm12 has a novel methyltransferase domain.
Probab=77.81 E-value=8.3 Score=24.32 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=25.6
Q ss_pred CCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEE
Q psy5598 47 PKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQV 79 (128)
Q Consensus 47 ~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~ 79 (128)
.++|..+.+.+-.|+.+.|||+.|+...=+++.
T Consensus 3 f~iGs~V~~kTc~g~~ieGEV~afD~~tk~lIl 35 (61)
T cd01735 3 FSVGSQVSCRTCFEQRLQGEVVAFDYPSKMLIL 35 (61)
T ss_pred cccccEEEEEecCCceEEEEEEEecCCCcEEEE
Confidence 468899999887788899999999877444433
No 55
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=56.78 E-value=58 Score=26.73 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=45.7
Q ss_pred eeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeC--CEEEE---------EEccCCCCcccCCcEEEEc
Q psy5598 28 YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSG--SKAVV---------QVFEGTSGIDAKNTVCEFT 96 (128)
Q Consensus 28 ~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~--~~v~l---------~~~~~~~Gi~~G~~~V~~t 96 (128)
.|-|.+-.|-+++.. .-+.-.+.+.+...++....|+|++.+. |-+++ .++++...++.|+ .|...
T Consensus 81 SG~vi~~~G~IlTn~--HVV~~~~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~~~~~~~~~l~~s~~~~~G~-~V~ai 157 (351)
T TIGR02038 81 SGVIMSKEGYILTNY--HVIKKADQIVVALQDGRKFEAELVGSDPLTDLAVLKIEGDNLPTIPVNLDRPPHVGD-VVLAI 157 (351)
T ss_pred EEEEEeCCeEEEecc--cEeCCCCEEEEEECCCCEEEEEEEEecCCCCEEEEEecCCCCceEeccCcCccCCCC-EEEEE
Confidence 455655445444333 1134445667766677778999998763 33433 3566777899995 99999
Q ss_pred CCeee
Q psy5598 97 GDILR 101 (128)
Q Consensus 97 g~~~~ 101 (128)
|.|+.
T Consensus 158 G~P~~ 162 (351)
T TIGR02038 158 GNPYN 162 (351)
T ss_pred eCCCC
Confidence 98854
No 56
>PRK10898 serine endoprotease; Provisional
Probab=45.81 E-value=1.7e+02 Score=24.07 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=45.0
Q ss_pred eeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeC--CEEEE---------EEccCCCCcccCCcEEEEc
Q psy5598 28 YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSG--SKAVV---------QVFEGTSGIDAKNTVCEFT 96 (128)
Q Consensus 28 ~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~--~~v~l---------~~~~~~~Gi~~G~~~V~~t 96 (128)
.|-|.+-.|-+++.. .-+.-.+.+.+...++....|+|++.+. |-+++ .+|++.+.+++|+ .|...
T Consensus 81 SGfvi~~~G~IlTn~--HVv~~a~~i~V~~~dg~~~~a~vv~~d~~~DlAvl~v~~~~l~~~~l~~~~~~~~G~-~V~ai 157 (353)
T PRK10898 81 SGVIMDQRGYILTNK--HVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATNLPVIPINPKRVPHIGD-VVLAI 157 (353)
T ss_pred eEEEEeCCeEEEecc--cEeCCCCEEEEEeCCCCEEEEEEEEEcCCCCEEEEEEcCCCCCeeeccCcCcCCCCC-EEEEE
Confidence 455665445444333 1133334556666677778899998864 44443 4566677789995 99998
Q ss_pred CCeee
Q psy5598 97 GDILR 101 (128)
Q Consensus 97 g~~~~ 101 (128)
|.|+.
T Consensus 158 G~P~g 162 (353)
T PRK10898 158 GNPYN 162 (353)
T ss_pred eCCCC
Confidence 88754
No 57
>PF04085 MreC: rod shape-determining protein MreC; InterPro: IPR007221 MreC (murein formation C) is involved in the rod shape determination in Escherichia coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped.; GO: 0008360 regulation of cell shape; PDB: 2J5U_B 2QF4_B 2QF5_A.
Probab=44.18 E-value=1.2e+02 Score=21.84 Aligned_cols=84 Identities=12% Similarity=-0.005 Sum_probs=50.7
Q ss_pred eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCE--EEEEEccCCCCcccCCcEEEEcCCeeeEeC
Q psy5598 27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSK--AVVQVFEGTSGIDAKNTVCEFTGDILRTPV 104 (128)
Q Consensus 27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~--v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpv 104 (128)
..|+|.++....-++.-+.+....=-+.+.. . ...|-+.+-..+. +.+.-+.....++.|| .|.-+|-.-..|.
T Consensus 36 lVG~V~~V~~~~S~V~li~d~~~~v~v~i~~--~-~~~Gi~~G~~~~~~~~~l~~i~~~~~i~~GD-~V~TSG~~~~fP~ 111 (152)
T PF04085_consen 36 LVGRVTEVGPNTSRVLLITDPNSRVSVKIER--S-GDRGILRGDGSNTGLLKLEYIPKDADIKKGD-IVVTSGLGGIFPP 111 (152)
T ss_dssp EEEEEEEE-SS-EEEEETTSSBCEEEEEEEC--T-TEEEEEEEEETTTTEEEEEEECTTS---TT--EEEEE-TTSSS-C
T ss_pred cEEEEEEECCCEEEEEEEeCCCceEEEEEec--C-CeeEEEEeCCCCCceEEEEECCCCCCCCCCC-EEEECCCCCcCCC
Confidence 5799999999999998665444422344442 2 2468888887665 8888888999999996 8887764433443
Q ss_pred CCCCccceecC
Q psy5598 105 SEDMLGRVFNG 115 (128)
Q Consensus 105 g~~lLGRViD~ 115 (128)
| =.+|+|...
T Consensus 112 G-i~VG~V~~v 121 (152)
T PF04085_consen 112 G-IPVGTVSSV 121 (152)
T ss_dssp C-EEEEEEEEE
T ss_pred C-CEEEEEEEE
Confidence 3 345666543
No 58
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=38.24 E-value=50 Score=20.83 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=31.2
Q ss_pred CceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEc--C-CeeeEeCCCCCccceecC
Q psy5598 60 GSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFT--G-DILRTPVSEDMLGRVFNG 115 (128)
Q Consensus 60 ~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~t--g-~~~~Vpvg~~lLGRViD~ 115 (128)
|..+.|+|+++.++.+.+-..+..+|+-+- +.+... . -.-.+.+|+.+..+|++.
T Consensus 7 GdiV~G~V~~v~~~~~~V~i~~~~~g~l~~-~~~~~~~~~~~~~~~~~GD~i~~~V~~~ 64 (82)
T cd04454 7 GDIVIGIVTEVNSRFWKVDILSRGTARLED-SSATEKDKKEIRKSLQPGDLILAKVISL 64 (82)
T ss_pred CCEEEEEEEEEcCCEEEEEeCCCceEEeec-hhccCcchHHHHhcCCCCCEEEEEEEEe
Confidence 334667777777777777666665555554 233211 0 012256777777777643
No 59
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.14 E-value=14 Score=29.16 Aligned_cols=15 Identities=40% Similarity=1.026 Sum_probs=13.0
Q ss_pred CccceecCCcccccC
Q psy5598 108 MLGRVFNGSGKPIDK 122 (128)
Q Consensus 108 lLGRViD~lG~PlDg 122 (128)
+.|||+|..|+|+.+
T Consensus 75 l~G~VlD~~G~Pv~~ 89 (226)
T COG3485 75 LEGRVLDGNGRPVPD 89 (226)
T ss_pred EEEEEECCCCCCCCC
Confidence 458999999999975
No 60
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=37.96 E-value=71 Score=25.66 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred EEEEEEEEeCCE---EEEEEccCCCCcccCCcEEEEcCCeeeEeCCCCCccceec
Q psy5598 63 RAGQVLEVSGSK---AVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFN 114 (128)
Q Consensus 63 ~~geVv~~~~~~---v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~lLGRViD 114 (128)
+.|+|++.+.+. .++.=-|..+|++.|+ .|...+ .+|.|+|.+
T Consensus 118 i~A~Vi~r~~~~~~~~i~IdkGs~dGV~~g~-~Vi~~~--------~GLVG~V~~ 163 (283)
T TIGR00219 118 ISAEVIYLNYDNYSTQVVINKGFNDGVYKDM-PVIADG--------KGLVGKVVS 163 (283)
T ss_pred eEEEEEEeCCCccccEEEEcCccccCCCCCC-EEEcCC--------CceEEEEEE
No 61
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=37.63 E-value=81 Score=19.66 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=23.1
Q ss_pred CCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEE
Q psy5598 46 FPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQ 78 (128)
Q Consensus 46 ~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~ 78 (128)
.+.+|+++++. ++ ..|.|..+.++.+++-
T Consensus 3 ~a~vGdiIefk--~g--~~G~V~kv~eNSVIVd 31 (57)
T PF09953_consen 3 KAKVGDIIEFK--DG--FTGIVEKVYENSVIVD 31 (57)
T ss_pred ccccCcEEEEc--CC--cEEEEEEEecCcEEEE
Confidence 37789999885 44 7899999998887763
No 62
>PRK10942 serine endoprotease; Provisional
Probab=36.93 E-value=2.7e+02 Score=23.94 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=43.7
Q ss_pred eeEEEEEE-CCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeC--CEEEE----------EEccCCCCcccCCcEEE
Q psy5598 28 YKTVSGVN-GPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSG--SKAVV----------QVFEGTSGIDAKNTVCE 94 (128)
Q Consensus 28 ~G~V~~I~-G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~--~~v~l----------~~~~~~~Gi~~G~~~V~ 94 (128)
.|-|.+-. |-+++.. .-+.=.+-+.|...++....|+|++.+. |-+++ .+|++...++.|+ .|.
T Consensus 114 SG~ii~~~~G~IlTn~--HVv~~a~~i~V~~~dg~~~~a~vv~~D~~~DlAvlki~~~~~l~~~~lg~s~~l~~G~-~V~ 190 (473)
T PRK10942 114 SGVIIDADKGYVVTNN--HVVDNATKIKVQLSDGRKFDAKVVGKDPRSDIALIQLQNPKNLTAIKMADSDALRVGD-YTV 190 (473)
T ss_pred EEEEEECCCCEEEeCh--hhcCCCCEEEEEECCCCEEEEEEEEecCCCCEEEEEecCCCCCceeEecCccccCCCC-EEE
Confidence 45565442 4444333 1133345566666677778999999864 33444 3455667789995 999
Q ss_pred EcCCee
Q psy5598 95 FTGDIL 100 (128)
Q Consensus 95 ~tg~~~ 100 (128)
..|.|+
T Consensus 191 aiG~P~ 196 (473)
T PRK10942 191 AIGNPY 196 (473)
T ss_pred EEcCCC
Confidence 988875
No 63
>PRK10139 serine endoprotease; Provisional
Probab=34.07 E-value=1.7e+02 Score=25.12 Aligned_cols=71 Identities=11% Similarity=0.198 Sum_probs=44.8
Q ss_pred eeEEEEE-ECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeC--CEEEE----------EEccCCCCcccCCcEEE
Q psy5598 28 YKTVSGV-NGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSG--SKAVV----------QVFEGTSGIDAKNTVCE 94 (128)
Q Consensus 28 ~G~V~~I-~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~--~~v~l----------~~~~~~~Gi~~G~~~V~ 94 (128)
.|-|.+= .|-+++.. .-+.-.+.+.|...++....|+|++.+. |.+++ .+|++...+..|+ .|.
T Consensus 93 SG~ii~~~~g~IlTn~--HVv~~a~~i~V~~~dg~~~~a~vvg~D~~~DlAvlkv~~~~~l~~~~lg~s~~~~~G~-~V~ 169 (455)
T PRK10139 93 SGVIIDAAKGYVLTNN--HVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGD-FAV 169 (455)
T ss_pred EEEEEECCCCEEEeCh--HHhCCCCEEEEEECCCCEEEEEEEEEcCCCCEEEEEecCCCCCceeEecCccccCCCC-EEE
Confidence 4666542 34444433 1144455667776677778999998753 33333 3455667788895 999
Q ss_pred EcCCeee
Q psy5598 95 FTGDILR 101 (128)
Q Consensus 95 ~tg~~~~ 101 (128)
..|.|+.
T Consensus 170 aiG~P~g 176 (455)
T PRK10139 170 AVGNPFG 176 (455)
T ss_pred EEecCCC
Confidence 9888754
No 64
>COG3168 PilP Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.04 E-value=81 Score=23.78 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=41.4
Q ss_pred HHHHhcccCCCCceeeeEEEEEECCEEEEEcCCC---CCcCcEEEEEeCCCceEEEEEEEEeCCEEEEE
Q psy5598 13 VLAVTRDYISQPRITYKTVSGVNGPLVILDEVKF---PKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQ 78 (128)
Q Consensus 13 ~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~---~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~ 78 (128)
.+.-+++|.....+..|++.+-.|..-.++.... ++.|+- | | .-.|.|++++++.+.+.
T Consensus 86 ~kepLE~fpLe~~rlvGtm~~g~~~~A~i~~~~~v~~V~vG~Y--l----G-qN~GrV~rI~d~~i~l~ 147 (170)
T COG3168 86 RKEPLEKFPLETFRLVGTLKSGQGVSALIEAPGGVYRVRVGQY--L----G-QNYGRVVRITDDSIVLN 147 (170)
T ss_pred ccCchhhCChhheeeEEEecCCCceEEEEEcCCceEEEeeccE--e----e-ccCceEEEecCCeEEee
Confidence 3456688888888889999988887777776532 333331 1 2 13689999999988764
No 65
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=33.69 E-value=98 Score=17.83 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=21.4
Q ss_pred CCcCcEEEEEeCCCceEEEEEEEEeCC
Q psy5598 47 PKYAEIVQLRLNDGSYRAGQVLEVSGS 73 (128)
Q Consensus 47 ~~iGe~~~i~~~~~~~~~geVv~~~~~ 73 (128)
...|+.|.....++.-..|.|++++++
T Consensus 3 ~~~G~~~~a~~~d~~wyra~I~~~~~~ 29 (57)
T smart00333 3 FKVGDKVAARWEDGEWYRARIIKVDGE 29 (57)
T ss_pred CCCCCEEEEEeCCCCEEEEEEEEECCC
Confidence 578999988763455689999999884
No 66
>PRK06247 pyruvate kinase; Provisional
Probab=30.36 E-value=3.7e+02 Score=23.49 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=18.7
Q ss_pred HHHHHHhHHHHhcccCCCCceeeeEEEEEECCEEEEE
Q psy5598 6 KQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILD 42 (128)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~ 42 (128)
.+..-+++|++.+++. +..+-.....|+-|++.
T Consensus 46 ~~~~i~~vr~~~~~~~----~~i~Il~Dl~GpkiR~g 78 (476)
T PRK06247 46 HRELYKRIREVEDETG----RPIGILADLQGPKLRLG 78 (476)
T ss_pred HHHHHHHHHHHHHHcC----CCeeEEEeCCCCceecc
Confidence 4556788888887764 22344444445555444
No 67
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=29.98 E-value=1.2e+02 Score=18.09 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=19.6
Q ss_pred CcCcEEEEEeCCCceEEEEEEEEeCC
Q psy5598 48 KYAEIVQLRLNDGSYRAGQVLEVSGS 73 (128)
Q Consensus 48 ~iGe~~~i~~~~~~~~~geVv~~~~~ 73 (128)
.+|+.|.+...++....|+|+.++.+
T Consensus 2 ~vG~~v~~~~~~~~~y~A~I~~~r~~ 27 (55)
T PF11717_consen 2 EVGEKVLCKYKDGQWYEAKILDIREK 27 (55)
T ss_dssp -TTEEEEEEETTTEEEEEEEEEEEEC
T ss_pred CcCCEEEEEECCCcEEEEEEEEEEec
Confidence 57898888864566789999998643
No 68
>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]. The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.
Probab=29.17 E-value=1e+02 Score=19.31 Aligned_cols=22 Identities=18% Similarity=0.496 Sum_probs=17.7
Q ss_pred EEEEEccCCCCcccCCcEEEEcC
Q psy5598 75 AVVQVFEGTSGIDAKNTVCEFTG 97 (128)
Q Consensus 75 v~l~~~~~~~Gi~~G~~~V~~tg 97 (128)
.+-.-|.+..||.+| ++|+..|
T Consensus 4 ~v~~~~~~~~GL~~g-s~V~~~G 25 (81)
T PF02470_consen 4 TVTVYFDDAGGLSVG-SPVRYRG 25 (81)
T ss_pred EEEEEECCcCCCCCc-CEEEECC
Confidence 345678888999999 6999876
No 69
>PRK08515 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=28.83 E-value=1.4e+02 Score=23.05 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=15.3
Q ss_pred CCCcCcEEEEEeCCCceEEEEEEE
Q psy5598 46 FPKYAEIVQLRLNDGSYRAGQVLE 69 (128)
Q Consensus 46 ~~~iGe~~~i~~~~~~~~~geVv~ 69 (128)
+..+||.+++.+.+++.+.|.|++
T Consensus 192 ~G~~Gd~IrVrN~Sgkii~g~V~~ 215 (222)
T PRK08515 192 DGNLGDIIQAKNKSNKILKAKVLS 215 (222)
T ss_pred cCCCCCEEEEEeCCCCEEEEEEec
Confidence 467777777776444456666653
No 70
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=27.23 E-value=1.3e+02 Score=17.02 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=23.1
Q ss_pred EEEEEeCCCceEEEEEEEEeCCEEEEEEcc
Q psy5598 52 IVQLRLNDGSYRAGQVLEVSGSKAVVQVFE 81 (128)
Q Consensus 52 ~~~i~~~~~~~~~geVv~~~~~~v~l~~~~ 81 (128)
.|.|..+...-+.|+|+...++.+.+.+.+
T Consensus 3 ~vWvpD~~egfv~g~I~~~~g~~vtV~~~~ 32 (42)
T PF02736_consen 3 WVWVPDPKEGFVKGEIIEEEGDKVTVKTED 32 (42)
T ss_dssp EEEEEESSSSEEEEEEEEEESSEEEEEETT
T ss_pred EEEEeCCcccEEEEEEEEEcCCEEEEEECC
Confidence 466765444468999999999999988765
No 71
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=26.45 E-value=85 Score=24.60 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=18.8
Q ss_pred CEEEEEEccCCCCcccCCcEEEEcC
Q psy5598 73 SKAVVQVFEGTSGIDAKNTVCEFTG 97 (128)
Q Consensus 73 ~~v~l~~~~~~~Gi~~G~~~V~~tg 97 (128)
...+...|.+..||..| ++|++.|
T Consensus 32 ~~~~~~~f~~~~GL~~g-~~V~~~G 55 (291)
T TIGR00996 32 TYTVYAYFTDAGGLYPG-SKVRVRG 55 (291)
T ss_pred CeEEEEEECCCcCCCCC-CceEEcc
Confidence 45666778888999999 5998876
No 72
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by Pfam model pfam08666.
Probab=25.98 E-value=2.1e+02 Score=19.28 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=17.9
Q ss_pred EEEEEcC--CCCCcCcEEEEEeC-CCceEEEEEE
Q psy5598 38 LVILDEV--KFPKYAEIVQLRLN-DGSYRAGQVL 68 (128)
Q Consensus 38 ~i~v~g~--~~~~iGe~~~i~~~-~~~~~~geVv 68 (128)
.|...|. .+..+||.+++.+. +++.+.|.|+
T Consensus 82 ~i~~~g~Al~~g~~G~~I~V~N~~s~k~i~~~V~ 115 (122)
T TIGR03170 82 SVTTEGKALEDGAVGDQIRVRNLSSGKIISGIVT 115 (122)
T ss_pred EEEEEEEEccccCCCCEEEEEECCCCCEEEEEEe
Confidence 3444443 34777887777753 3445666665
No 73
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=25.63 E-value=4.4e+02 Score=22.78 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=18.5
Q ss_pred HHHHHHhHHHHhcccCCCCceeeeEEEEEECCEEEEE
Q psy5598 6 KQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILD 42 (128)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~ 42 (128)
.+.+-+++|++.+++. +..+-.....|+-|++.
T Consensus 42 ~~~~i~~ir~~~~~~~----~~~~i~~Dl~GpkiR~g 74 (473)
T TIGR01064 42 HGKRIENVREAAEKLG----RPVAILLDTKGPEIRTG 74 (473)
T ss_pred HHHHHHHHHHHHHHhC----CCeEEEEeCCCCceecc
Confidence 4556788888887663 22334444445544443
No 74
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=25.17 E-value=2.3e+02 Score=20.62 Aligned_cols=51 Identities=24% Similarity=0.377 Sum_probs=32.3
Q ss_pred CCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeE
Q psy5598 47 PKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRT 102 (128)
Q Consensus 47 ~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~V 102 (128)
...|..+.+...+|....+.|+.++++.+.+=-=.+..|- .+.+.-+...|
T Consensus 93 ~~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk-----~L~f~v~i~~v 143 (156)
T PRK15095 93 PEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQ-----TVHFDIEVLEI 143 (156)
T ss_pred CCCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCC-----EEEEEEEEEEe
Confidence 5678777776555656778888888888877544444432 44444444444
No 75
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=23.87 E-value=1.9e+02 Score=19.70 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=22.8
Q ss_pred HHHHHHhHHHHhcccCCCCceeeeEEEEEECCEEEEEcCC
Q psy5598 6 KQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVK 45 (128)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~ 45 (128)
..+++..|+++.++. -|+|.+|.|....+++..
T Consensus 16 ~~~I~~RL~qLsdNC-------GGkVl~v~~~tAilrF~~ 48 (90)
T PF11608_consen 16 PSSIKNRLRQLSDNC-------GGKVLSVSGGTAILRFPN 48 (90)
T ss_dssp HHHHHHHHHHHHHTT-------T--EEE--TT-EEEEESS
T ss_pred HHHHHHHHHHHhhcc-------CCEEEEEeCCEEEEEeCC
Confidence 456788888988888 499999999999999763
No 76
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=23.70 E-value=2.5e+02 Score=19.32 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=33.5
Q ss_pred EECCEEEEEcCC----CCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCC
Q psy5598 34 VNGPLVILDEVK----FPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSG 85 (128)
Q Consensus 34 I~G~~i~v~g~~----~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~G 85 (128)
+.+...++...+ +++.||++.++..++....-+++.-+++.++-+.+.+...
T Consensus 9 l~~~~y~l~n~Pf~a~glA~gDvV~~~~~~g~~~~~~~v~~sGnsTiRv~~~~~~~ 64 (117)
T PF14085_consen 9 LGDDTYRLDNIPFFAYGLALGDVVRAEPDDGELWFQKVVESSGNSTIRVIFDDPGP 64 (117)
T ss_pred cCCCEEEEEecccccCCCCCCCEEEEEeCCCeEEEEEEEecCCCEEEEEEEcCCcc
Confidence 335555555443 5899999999876654455566666888776555544443
No 77
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=23.17 E-value=34 Score=25.83 Aligned_cols=14 Identities=43% Similarity=0.812 Sum_probs=11.2
Q ss_pred ccceecCCcccccC
Q psy5598 109 LGRVFNGSGKPIDK 122 (128)
Q Consensus 109 LGRViD~lG~PlDg 122 (128)
-|||+|..|+|+.+
T Consensus 33 ~G~V~D~~g~Pv~~ 46 (183)
T PF00775_consen 33 HGRVIDTDGKPVPG 46 (183)
T ss_dssp EEEEEETTSSB-TT
T ss_pred EEEEECCCCCCCCC
Confidence 38999999999965
No 78
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=23.11 E-value=2.2e+02 Score=24.23 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=36.1
Q ss_pred CCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEE
Q psy5598 47 PKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEF 95 (128)
Q Consensus 47 ~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~ 95 (128)
.+-||.+..+---...+.||.++...++++........-...|+ +|..
T Consensus 352 F~rGevv~aevV~~Gr~kGEmlavArdRvIav~~~~~~~~~vG~-~vkv 399 (414)
T COG2100 352 FKRGEVVKAEVVLPGRLKGEMLAVARDRVIAVINSNEGALLVGD-RVKV 399 (414)
T ss_pred cccCcEEEEEEEecceecceEEEEecccEEEEecCchhhhccCc-eEEE
Confidence 67899887653222358999999999999888887766677885 7654
No 79
>PTZ00300 pyruvate kinase; Provisional
Probab=22.52 E-value=5.1e+02 Score=22.45 Aligned_cols=99 Identities=10% Similarity=0.008 Sum_probs=50.7
Q ss_pred HHHHHHhHHHHhcccCCCCceeeeEEEEEECCEEEEEcCCC----CCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEc-
Q psy5598 6 KQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKF----PKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVF- 80 (128)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~----~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~- 80 (128)
.+..-+|+|++.++.. +..+-.....|+-|++..+++ ..-|+.+.+........ ...+..+-..|
T Consensus 16 h~~~i~~vr~~~~~~~----~~i~il~Dl~GPkiR~g~~~~~~~~l~~G~~~~l~~~~~~~~------~~~~~~i~v~~~ 85 (454)
T PTZ00300 16 HQTTINNVRQAAAELG----VNIAIALDTKGPEIRTGLFVGGEAVMERGATCYVTTDPAFAD------KGTKDKFYIDYQ 85 (454)
T ss_pred HHHHHHHHHHHHHHhC----CCeEEEEecCCCceeccccCCCcEEecCCCEEEEEecccccc------CCCCCEEEecCc
Confidence 4556678888877664 335666666777766654432 44455555432100000 00111222233
Q ss_pred cCCCCcccCCcEEEEcCCeeeEeC---C--CCCccceecC
Q psy5598 81 EGTSGIDAKNTVCEFTGDILRTPV---S--EDMLGRVFNG 115 (128)
Q Consensus 81 ~~~~Gi~~G~~~V~~tg~~~~Vpv---g--~~lLGRViD~ 115 (128)
+-...+++|| .|......+++.| . +.+..+|.++
T Consensus 86 ~l~~~v~~G~-~ilidDG~i~l~V~~~~~~~~v~~~v~~g 124 (454)
T PTZ00300 86 NLSKVVRPGG-YIYIDDGILILHVQSHEDEQTLKCTVTNA 124 (454)
T ss_pred ccccccCCCC-EEEEeCCeEEEEEEEEcCCceEEEEEecC
Confidence 3346688885 8877665555543 2 3455566543
No 80
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=22.51 E-value=1.7e+02 Score=17.43 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=13.3
Q ss_pred EEEEEEEEeCCEEEEEEccCCCCcc
Q psy5598 63 RAGQVLEVSGSKAVVQVFEGTSGID 87 (128)
Q Consensus 63 ~~geVv~~~~~~v~l~~~~~~~Gi~ 87 (128)
..|+|.++.+..+.+...+...|+-
T Consensus 4 v~g~V~~v~~~Gv~V~l~~~~~G~v 28 (68)
T cd05707 4 VRGFVKNIANNGVFVTLGRGVDARV 28 (68)
T ss_pred EEEEEEEEECccEEEEeCCCCEEEE
Confidence 4566666665555555554444433
No 81
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=22.25 E-value=1.7e+02 Score=17.65 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=26.1
Q ss_pred eEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEc----CCe-eeEeCCCCCccceec
Q psy5598 62 YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFT----GDI-LRTPVSEDMLGRVFN 114 (128)
Q Consensus 62 ~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~t----g~~-~~Vpvg~~lLGRViD 114 (128)
.+.|+|+.+.+..+.+......+|+-.- +.+... ..+ -.+.+|+.+..+|++
T Consensus 3 iV~g~V~~i~~~gi~v~l~~~i~g~i~~-~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~ 59 (70)
T cd05702 3 LVKAKVKSVKPTQLNVQLADNVHGRIHV-SEVFDEWPDGKNPLSKFKIGQKIKARVIG 59 (70)
T ss_pred EEEEEEEEEECCcEEEEeCCCcEEEEEH-HHhccccccccChhHhCCCCCEEEEEEEE
Confidence 3566677776666666655444444433 233211 111 124566666666654
No 82
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=22.18 E-value=2.8e+02 Score=21.02 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=26.9
Q ss_pred CCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEcc
Q psy5598 46 FPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFE 81 (128)
Q Consensus 46 ~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~ 81 (128)
..+.||.+.+...+|....|++..++.+.+.+...+
T Consensus 16 R~k~Gd~i~v~dg~g~~~~a~i~~i~~~~~~~~i~~ 51 (225)
T PF04452_consen 16 RLKEGDSIEVFDGDGGEYRAEITEISKKSATLRILE 51 (225)
T ss_dssp T--TT-EEEEEESSSEEEEEEEEEEESSEEEEEEEE
T ss_pred CCCCCCEEEEEECCCCEEEEEEEECcCcEEEEEEee
Confidence 378899999987666678999999999998776663
No 83
>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]
Probab=21.03 E-value=3.9e+02 Score=20.48 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=32.2
Q ss_pred ECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEE--eCCEEEEEEccCCC-CcccC
Q psy5598 35 NGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEV--SGSKAVVQVFEGTS-GIDAK 89 (128)
Q Consensus 35 ~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~--~~~~v~l~~~~~~~-Gi~~G 89 (128)
.|.++.|+--..+.=||+|....+ |+ .+-+..| +++.+.++|..++- .+...
T Consensus 129 dGDlvvV~~~~~a~~GdiVvA~i~-g~--e~TvKrl~~~g~~i~L~p~Np~~~~i~~~ 183 (201)
T COG1974 129 DGDLVVVDPTEDAENGDIVVALID-GE--EATVKRLYRDGNQILLKPENPAYPPIPVD 183 (201)
T ss_pred CCCEEEEcCCCCCCCCCEEEEEcC-CC--cEEEEEEEEeCCEEEEEeCCCCCCCcccC
Confidence 466777775445777887766543 32 3444444 56788899988765 34433
No 84
>PF13144 SAF_2: SAF-like
Probab=20.80 E-value=3.3e+02 Score=19.98 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=11.4
Q ss_pred CCCcCcEEEEEeCC-CceEEEEEE
Q psy5598 46 FPKYAEIVQLRLND-GSYRAGQVL 68 (128)
Q Consensus 46 ~~~iGe~~~i~~~~-~~~~~geVv 68 (128)
+..+||.+.+.+.+ ++.+.|.|+
T Consensus 166 ~G~~G~~I~V~N~~S~k~v~g~V~ 189 (196)
T PF13144_consen 166 DGALGDTIRVKNLSSGKIVQGRVI 189 (196)
T ss_pred CCCCCCEEEEEECCCCCEEEEEEe
Confidence 35555555555432 334555554
No 85
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=20.64 E-value=43 Score=26.20 Aligned_cols=14 Identities=36% Similarity=0.876 Sum_probs=12.2
Q ss_pred ccceecCCcccccC
Q psy5598 109 LGRVFNGSGKPIDK 122 (128)
Q Consensus 109 LGRViD~lG~PlDg 122 (128)
-|||+|..|+||-+
T Consensus 69 ~G~V~D~~G~PV~~ 82 (220)
T cd03464 69 HGRVLDEDGRPVPN 82 (220)
T ss_pred EEEEECCCCCCCCC
Confidence 39999999999965
No 86
>COG4873 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.55 E-value=1.7e+02 Score=19.07 Aligned_cols=39 Identities=23% Similarity=0.481 Sum_probs=28.4
Q ss_pred CCcCcEEEEEeCCCceEEEEEEEEeCCEEEE--EEccCCCCcccC
Q psy5598 47 PKYAEIVQLRLNDGSYRAGQVLEVSGSKAVV--QVFEGTSGIDAK 89 (128)
Q Consensus 47 ~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l--~~~~~~~Gi~~G 89 (128)
+.+|+++++. || +.|.|-.++++.+++ ..++....+...
T Consensus 24 a~vgniief~--dg--l~g~vek~nensvivdlt~menf~dl~l~ 64 (81)
T COG4873 24 AKVGNIIEFK--DG--LTGVVEKVNENSVIVDLTIMENFRDLELD 64 (81)
T ss_pred eeccceEEEc--cc--ceeeeeeecCCcEEEEEEeeccccccCCc
Confidence 6788988886 56 788898998887764 455666655554
No 87
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=20.39 E-value=5.8e+02 Score=22.24 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=18.4
Q ss_pred HHHHHHhHHHHhcccCCCCceeeeEEEEEECCEEEEE
Q psy5598 6 KQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILD 42 (128)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~ 42 (128)
.+.+-+++|++.+++.. ..+-.....|+-|++.
T Consensus 43 ~~~~i~~vr~~~~~~~~----~i~il~Dl~GpkiR~g 75 (480)
T cd00288 43 HQSRIDNVREAAEKTGG----PVAIALDTKGPEIRTG 75 (480)
T ss_pred HHHHHHHHHHHHHHhCC----CeEEEEecCCCceeec
Confidence 35566788888777642 2334444445544443
Done!