Query psy5598
Match_columns 128
No_of_seqs 182 out of 1024
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 21:37:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gqb_B V-type ATP synthase bet 99.9 2.8E-24 9.5E-29 180.5 12.9 101 25-126 5-106 (464)
2 3vr4_D V-type sodium ATPase su 99.9 3.5E-24 1.2E-28 179.9 12.9 100 26-126 10-110 (465)
3 3oaa_A ATP synthase subunit al 99.9 4.3E-24 1.5E-28 180.9 11.7 114 8-126 7-121 (513)
4 2qe7_A ATP synthase subunit al 99.9 6.6E-24 2.3E-28 179.7 11.7 114 8-126 7-121 (502)
5 2c61_A A-type ATP synthase non 99.9 3.8E-24 1.3E-28 180.0 9.0 105 21-126 7-111 (469)
6 2ck3_A ATP synthase subunit al 99.9 1.1E-23 3.8E-28 178.6 11.2 113 9-126 8-121 (510)
7 1fx0_A ATP synthase alpha chai 99.9 6.5E-24 2.2E-28 179.9 9.0 114 8-126 8-122 (507)
8 2r9v_A ATP synthase subunit al 99.9 1.4E-23 4.7E-28 178.0 10.7 114 9-126 20-134 (515)
9 3vr4_A V-type sodium ATPase ca 99.9 1.3E-21 4.5E-26 167.9 11.7 92 28-123 10-101 (600)
10 3gqb_A V-type ATP synthase alp 99.9 1.2E-21 4.2E-26 167.6 11.1 92 28-123 3-94 (578)
11 1sky_E F1-ATPase, F1-ATP synth 99.9 7.4E-21 2.5E-25 160.2 13.8 98 28-126 3-109 (473)
12 2dpy_A FLII, flagellum-specifi 99.8 4E-21 1.4E-25 160.0 11.4 101 24-126 6-116 (438)
13 3mfy_A V-type ATP synthase alp 99.8 1.3E-22 4.3E-27 173.8 1.8 95 27-125 3-97 (588)
14 1fx0_B ATP synthase beta chain 99.8 3.1E-20 1.1E-24 157.1 12.0 98 28-126 20-124 (498)
15 2ck3_D ATP synthase subunit be 99.8 6.8E-20 2.3E-24 154.6 12.9 98 27-126 13-112 (482)
16 2j5u_A MREC protein; bacterial 47.1 89 0.003 23.5 10.2 82 28-113 110-195 (255)
17 2e6z_A Transcription elongatio 42.1 23 0.00079 20.8 2.9 35 46-80 7-41 (59)
18 2v31_A Ubiquitin-activating en 37.5 45 0.0015 22.3 4.1 43 54-97 7-52 (112)
19 4dt4_A FKBP-type 16 kDa peptid 36.4 83 0.0028 22.3 5.7 51 47-102 113-163 (169)
20 2kr7_A FKBP-type peptidyl-prol 35.5 86 0.003 21.5 5.5 53 46-103 93-145 (151)
21 2xk0_A Polycomb protein PCL; t 35.3 80 0.0027 19.5 5.8 39 46-84 15-53 (69)
22 3cgm_A SLYD, peptidyl-prolyl C 33.5 1E+02 0.0036 21.3 5.7 53 46-103 84-136 (158)
23 2y4x_A PILP protein; biosynthe 28.2 90 0.0031 20.1 4.3 59 14-78 13-73 (93)
24 3ic8_A Uncharacterized GST-lik 27.8 1.8E+02 0.0063 21.4 7.4 55 45-103 252-308 (310)
25 2qf4_A Cell shape determining 27.4 1.6E+02 0.0055 20.6 8.1 70 27-98 47-120 (172)
26 2qqr_A JMJC domain-containing 26.9 1.5E+02 0.0051 20.0 5.9 40 44-83 3-42 (118)
27 2ivw_A PILP pilot protein; lip 25.6 1.3E+02 0.0043 20.2 4.8 60 14-79 16-77 (113)
28 3tee_A Flagella basal BODY P-r 24.8 1.1E+02 0.0037 22.5 4.7 37 32-68 151-189 (219)
29 4gop_A Putative uncharacterize 22.7 1.7E+02 0.0058 19.2 8.8 55 16-74 12-70 (114)
30 2do3_A Transcription elongatio 22.6 99 0.0034 19.0 3.5 33 47-79 18-50 (69)
31 4e8b_A Ribosomal RNA small sub 22.0 1.5E+02 0.0051 22.0 5.1 36 46-81 33-68 (251)
32 1vhk_A Hypothetical protein YQ 21.5 1.9E+02 0.0064 21.8 5.6 37 46-82 36-72 (268)
33 2bum_A Protocatechuate 3,4-dio 20.8 27 0.00094 25.8 0.7 15 108-122 55-69 (209)
34 2equ_A PHD finger protein 20-l 20.3 1.6E+02 0.0054 18.0 4.9 37 46-82 9-45 (74)
35 3t63_A 3,4-PCD, protocatechuat 20.0 29 0.001 25.6 0.7 15 108-122 51-65 (200)
No 1
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=99.91 E-value=2.8e-24 Score=180.51 Aligned_cols=101 Identities=43% Similarity=0.653 Sum_probs=94.5
Q ss_pred ceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcc-cCCcEEEEcCCeeeEe
Q psy5598 25 RITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID-AKNTVCEFTGDILRTP 103 (128)
Q Consensus 25 ~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~-~G~~~V~~tg~~~~Vp 103 (128)
.++||+|++|.|+++++.|++++++||+|+|..+++..+.|||++|+++.+.++||+++.||+ .| ++|++||++++||
T Consensus 5 ~~~~g~V~~v~g~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g-~~V~~tg~~~~vp 83 (464)
T 3gqb_B 5 KKEYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLAT-TSVSLVEDVARLG 83 (464)
T ss_dssp CCCBCCEEEEETTEEEEESCTTSCTTCEEEEECTTSCEEEEEEEEEESSEEEEEESSCCTTCCSSS-CEEEEEESSCEEE
T ss_pred cceeeEEEEEECCEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCC-CEEEECCCCcEEE
Confidence 356999999999999999998899999999986556568999999999999999999999999 89 5999999999999
Q ss_pred CCCCCccceecCCcccccCCCCC
Q psy5598 104 VSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 104 vg~~lLGRViD~lG~PlDg~~~~ 126 (128)
||++|||||||++|+|||+++++
T Consensus 84 vg~~lLGRV~d~lG~PiD~~~~i 106 (464)
T 3gqb_B 84 VSKEMLGRRFNGIGKPIDGLPPI 106 (464)
T ss_dssp ECSTTTTEEEETTCCBCSSSCCC
T ss_pred eChHhcCCEeccCCcccCCCccc
Confidence 99999999999999999999875
No 2
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=99.91 E-value=3.5e-24 Score=179.93 Aligned_cols=100 Identities=46% Similarity=0.769 Sum_probs=93.4
Q ss_pred eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcc-cCCcEEEEcCCeeeEeC
Q psy5598 26 ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID-AKNTVCEFTGDILRTPV 104 (128)
Q Consensus 26 ~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~-~G~~~V~~tg~~~~Vpv 104 (128)
++||+|++|.|++++++|++++++||+|+|..+++..+.|||++|+++.+.++||+++.||+ .| ++|.+||++++|||
T Consensus 10 ~~~g~v~~v~g~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g-~~V~~tg~~~~vpv 88 (465)
T 3vr4_D 10 KEYRTIKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSGINLKN-SSVRFLGHPLQLGV 88 (465)
T ss_dssp -CBCCEEEEETTEEEEESCCSCCTTCEEEEECTTSCEEEEEEEEEESSEEEEEETTCCTTCCTTT-CEEEECSSCCEEEE
T ss_pred ceEEEEEEEECCEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCC-CEEEECCCcceeec
Confidence 46999999999999999998899999999986556568999999999999999999999999 89 59999999999999
Q ss_pred CCCCccceecCCcccccCCCCC
Q psy5598 105 SEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 105 g~~lLGRViD~lG~PlDg~~~~ 126 (128)
|++|||||||++|+|||+++++
T Consensus 89 g~~lLGRV~d~lG~PiD~~~~i 110 (465)
T 3vr4_D 89 SEDMIGRVFDGLGRPKDNGPEI 110 (465)
T ss_dssp CGGGTTEEEETTSCBCSCCCCC
T ss_pred chhhccceeccCCcccCCCCCC
Confidence 9999999999999999999875
No 3
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=99.91 E-value=4.3e-24 Score=180.91 Aligned_cols=114 Identities=20% Similarity=0.245 Sum_probs=91.5
Q ss_pred HHHHhHHHHhcccCCCC-ceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598 8 ALRENVLAVTRDYISQP-RITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI 86 (128)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi 86 (128)
.+.+.+++++++|.... .+.+|+|++|.|+++++.|++++++||+|++. ++ ..|||++++++.+.+++|+++.||
T Consensus 7 ~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~i~~v~Gl~~~~~gElv~~~--~~--~~g~v~~l~~d~v~~~~~~~~~gi 82 (513)
T 3oaa_A 7 EISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLP--GN--RYAIALNLERDSVGAVVMGPYADL 82 (513)
T ss_dssp -----------------CCTTEEEEEEEETTEEEEEECTTCBTTCEEEET--TT--EEEEEEEECSSCEEEEESSCCSSC
T ss_pred HHHHHHHHHHHhcCCCCCceeEEEEEEEECcEEEEECCccCCcCCEEEEC--CC--CEEEEEEeeCCEEEEEEeCCccCC
Confidence 34556777888887543 45699999999999999999889999999994 34 789999999999999999999999
Q ss_pred ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
++| ++|.+||++++||||++|||||+|++|+|||+++++
T Consensus 83 ~~G-~~V~~tg~~~~VpvG~~lLGRV~d~lG~PiDg~g~i 121 (513)
T 3oaa_A 83 AEG-MKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPL 121 (513)
T ss_dssp CTT-CEEECCSCSSEEECSGGGTTCEEETTSCBTTCSCSC
T ss_pred CCC-CEEEEcCCCCeEeeCHHHhccchhhcCcCccCCCCC
Confidence 999 599999999999999999999999999999999876
No 4
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=99.90 E-value=6.6e-24 Score=179.65 Aligned_cols=114 Identities=21% Similarity=0.305 Sum_probs=89.9
Q ss_pred HHHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598 8 ALRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI 86 (128)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi 86 (128)
.+.+.+++++++|...+. +.+|+|++|.|+++++.|++++++||+|++. ++ ..|+|++|+++.+.+++|+++.||
T Consensus 7 ~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~--~g--~~g~v~~l~~~~v~~~~~~~~~gi 82 (502)
T 2qe7_A 7 EISALIKKQIENYEADLEVVEVGTVIQVGDGIARVHGLEKVMAGELLEFE--NG--VMGMAQNLEEDNVGVVILGPYTEI 82 (502)
T ss_dssp --------------------CEEEEEEEETTEEEEECCTTCBTTEEEEET--TS--CEEEEEEEETTEEEEEECSCCSSC
T ss_pred HHHHHHHHHHHhcCCCcceeEEEEEEEecCcEEEEEECCCCCCCCEEEEC--CC--CEEEEEEecCCeEEEEEecCccCC
Confidence 455667888888887654 3699999999999999999889999999995 34 469999999999999999999999
Q ss_pred ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+.| ++|.+||++++||||++|||||+|++|+|||+++++
T Consensus 83 ~~G-~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i 121 (502)
T 2qe7_A 83 REG-TQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPI 121 (502)
T ss_dssp CTT-CEEEEEEEESEEECSGGGTTCEECTTCCBSSCSCCC
T ss_pred cCC-CEEEEeCCcceEEcccccceEEEccCCCCCCCCCCC
Confidence 999 599999999999999999999999999999999875
No 5
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=99.90 E-value=3.8e-24 Score=180.01 Aligned_cols=105 Identities=41% Similarity=0.686 Sum_probs=71.4
Q ss_pred CCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCee
Q psy5598 21 ISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDIL 100 (128)
Q Consensus 21 ~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~ 100 (128)
+.+..+.||+|++|.|++++++|+..+++||+|+|...++....|||++|+++.+.+++|+++.||++| ++|.+||+++
T Consensus 7 ~~~~~~~~g~V~~V~g~vv~v~g~~~~~~ge~v~i~~~~g~~~~geV~~~~~~~v~~~~~~~t~gl~~G-~~V~~tg~~l 85 (469)
T 2c61_A 7 HHPMVKEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKD-CGVIFTGETL 85 (469)
T ss_dssp ---------------CCEEEEECCSCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEC--------------CEEEBC
T ss_pred CCcccccccEEEEEECcEEEEeeCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCEEEEEEeCCCcCCCCC-CEEEEcCCCc
Confidence 445667899999999999999999789999999997544545789999999999999999999999999 5999999999
Q ss_pred eEeCCCCCccceecCCcccccCCCCC
Q psy5598 101 RTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 101 ~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+||||++|||||||++|+|||+++++
T Consensus 86 ~vpvg~~lLGRV~d~lG~PiDg~~~i 111 (469)
T 2c61_A 86 KLPASVDLLGRILSGSGEPRDGGPRI 111 (469)
T ss_dssp EEEECGGGTTCEEETTSCBSSSCCCC
T ss_pred EEEccccceeeEEcccCCCCCCCCCC
Confidence 99999999999999999999998775
No 6
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=99.90 E-value=1.1e-23 Score=178.59 Aligned_cols=113 Identities=20% Similarity=0.256 Sum_probs=90.8
Q ss_pred HHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcc
Q psy5598 9 LRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87 (128)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~ 87 (128)
+.+.+++++++|...+. +.+|+|++|.|+++++.|++++++||+|++. ++ ..|+|++|+++.+.+++|+++.||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~--~g--~~g~v~~l~~~~v~~~~~~~~~gi~ 83 (510)
T 2ck3_A 8 VSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFS--SG--LKGMSLNLEPDNVGVVVFGNDKLIK 83 (510)
T ss_dssp ----------------CCSSEEEEEEEETTEEEEEECTTCBTTCEEEET--TS--CEEEEEEECSSCEEEEESSCGGGCC
T ss_pred HHHHHHHHHHhcCCCcceeEEeEEEEEECcEEEEeeCCCCCCCCEEEEC--CC--CeEEEEeccCCeEEEEEECCccccc
Confidence 44557788888877653 4699999999999999999889999999995 34 4699999999999999999999999
Q ss_pred cCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 88 AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 88 ~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
.| ++|.+||++++||||++|||||+|++|+|||+++++
T Consensus 84 ~G-~~V~~tg~~~~vpvg~~lLGRVvd~lG~PiDg~g~i 121 (510)
T 2ck3_A 84 EG-DIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI 121 (510)
T ss_dssp TT-CEEEECCCCCEEEESGGGTTCEECTTSCBCSSSCCC
T ss_pred CC-CEEEEeCCcceeecCccceeeEEccCCcCcCCCCCC
Confidence 99 599999999999999999999999999999999876
No 7
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=99.90 E-value=6.5e-24 Score=179.87 Aligned_cols=114 Identities=24% Similarity=0.311 Sum_probs=90.7
Q ss_pred HHHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598 8 ALRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI 86 (128)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi 86 (128)
.+.+.+++++++|...+. +.+|+|++|.|+++++.|++++++||+|++. ++ ..|+|++|+++.+.+++|+++.||
T Consensus 8 ~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~--~g--~~g~v~~l~~~~v~~~~~~~~~gi 83 (507)
T 1fx0_A 8 EISKIIRERIEGYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFE--EG--TIGIALNLESNNVGVVLMGDGLMI 83 (507)
T ss_dssp -----------------CTTTEEEECCCCSSEEEEEECTTCCTTCCEEET--TC--CEEEEEEECSSEEEEEECSCGGGC
T ss_pred HHHHHHHHHHHhccCCcceeEEEEEEEEeCCEEEEEECCCccCCCEEEEC--CC--ceEEEEeccCCeEEEEEecCccCC
Confidence 455667888888877653 3699999999999999999889999999995 34 469999999999999999999999
Q ss_pred ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+.| ++|.+||++++||||++|||||+|++|+|||+++++
T Consensus 84 ~~G-~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i 122 (507)
T 1fx0_A 84 QEG-SSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEI 122 (507)
T ss_dssp CTT-CEEECCCCCCEEEESSSCSSCCCCSSSCCSSSSCCC
T ss_pred cCC-CEEEEeCCcceeecCccceeEEEccCCcCCCCCCCC
Confidence 999 599999999999999999999999999999999876
No 8
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=99.90 E-value=1.4e-23 Score=178.04 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=96.8
Q ss_pred HHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcc
Q psy5598 9 LRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87 (128)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~ 87 (128)
+.+.+++++++|...+. ..+|+|++|.|+++++.|++++++||+|++. .++ ..|+|++|+++.+.+++|+++.||+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~G~V~~V~g~iv~v~gl~~~~~gEl~~i~-~~g--~~g~v~~l~~~~v~~~~~~~~~gi~ 96 (515)
T 2r9v_A 20 ITKVLEEKIKSFEEKIDLEDTGKVIQVGDGIARAYGLNKVMVSELVEFV-ETG--VKGVAFNLEEDNVGIIILGEYKDIK 96 (515)
T ss_dssp ---------CTTCCCSCTTTEEEEEEEETTEEEEEECTTCCTTEEEEET-TTC--CEEEEEECCTTCEEEEEESCCTTCC
T ss_pred HHHHHHHHHHhcCCCCcceeeeEEEEEECcEEEEecCCCCCCCCEEEEe-cCC--eEEEEEEecCCeEEEEEecCccccc
Confidence 44557888999987754 3699999999999999999889999999995 234 4699999999999999999999999
Q ss_pred cCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 88 AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 88 ~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
.| ++|.+||++++||||++|||||+|++|+|||+++++
T Consensus 97 ~G-~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i 134 (515)
T 2r9v_A 97 EG-HTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPI 134 (515)
T ss_dssp TT-CEEEEEEEECEEEESGGGTTCEECTTSCBCSSSCCC
T ss_pred CC-CEEEEeCCcceeecCccceeeEEcCCCCCcCCCCCC
Confidence 99 599999999999999999999999999999999875
No 9
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=99.86 E-value=1.3e-21 Score=167.91 Aligned_cols=92 Identities=24% Similarity=0.437 Sum_probs=87.1
Q ss_pred eeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCC
Q psy5598 28 YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSED 107 (128)
Q Consensus 28 ~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~ 107 (128)
.|+|.+|.|++++++|+.++++||+|+|. +..+.|||++|+++.+.+|+|+++.||++|+ +|++||++++||+|++
T Consensus 10 ~G~V~~V~G~vv~v~g~~~~~~gE~v~v~---~~~l~gEVi~~~~d~a~i~v~e~t~Gl~~G~-~V~~tG~~lsV~vG~~ 85 (600)
T 3vr4_A 10 IGKIIKVSGPLVMAENMSEASIQDMCLVG---DLGVIGEIIEMRQDVASIQVYEETSGIGPGE-PVRSTGEALSVELGPG 85 (600)
T ss_dssp CEEEEEEETTEEEEESCTTSCTTCEEEET---TTTEEEEEEEEETTEEEEEESSCCTTCCTTC-EEEECSSSSEEEESTT
T ss_pred ceEEEEEECcEEEEEcCCCCccCCEEEEC---CCcEEEEEEEEcCCcEEEEEccCCCCCCCCC-EEEECCCCCEEEeCHH
Confidence 79999999999999999889999999993 2248999999999999999999999999995 9999999999999999
Q ss_pred CccceecCCcccccCC
Q psy5598 108 MLGRVFNGSGKPIDKD 123 (128)
Q Consensus 108 lLGRViD~lG~PlDg~ 123 (128)
|||||||++|+|||++
T Consensus 86 lLGrV~DglGrPlD~~ 101 (600)
T 3vr4_A 86 IISQMFDGIQRPLDTF 101 (600)
T ss_dssp CTTCEECTTCCBHHHH
T ss_pred HHhhhhCcCCCccccc
Confidence 9999999999999986
No 10
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=99.86 E-value=1.2e-21 Score=167.57 Aligned_cols=92 Identities=24% Similarity=0.414 Sum_probs=87.0
Q ss_pred eeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCC
Q psy5598 28 YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSED 107 (128)
Q Consensus 28 ~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~ 107 (128)
.|+|++|.|++++++|+.++++||+|+|. +..+.|||++|+++.+.+|+|+++.||++|+ +|++||++++||+|++
T Consensus 3 ~G~V~~V~G~vv~v~g~~~~~~gE~v~v~---~~~l~gEVi~~~~d~~~i~v~e~t~Gl~~G~-~V~~tg~~l~V~vG~~ 78 (578)
T 3gqb_A 3 QGVIQKIAGPAVIAKGMLGARMYDISKVG---EEGLVGEIIRLDGDTAFVQVYEDTSGLKVGE-PVVSTGLPLAVELGPG 78 (578)
T ss_dssp EEEEEEEETTEEEEESCTTCCTTEEEEET---TTTEEEEEEEEETTEEEEEESSCCTTCCTTC-EEEEEEEESEEEESTT
T ss_pred eeEEEEEECCEEEEEcCCCCccCCEEEEC---CCcEEEEEEEEcCCcEEEEEcCCCCCCCCCC-EEEECCCCCEEEeCHH
Confidence 69999999999999999889999999993 2248999999999999999999999999995 9999999999999999
Q ss_pred CccceecCCcccccCC
Q psy5598 108 MLGRVFNGSGKPIDKD 123 (128)
Q Consensus 108 lLGRViD~lG~PlDg~ 123 (128)
|||||||++|+|||++
T Consensus 79 lLGrV~DglG~PlD~~ 94 (578)
T 3gqb_A 79 MLNGIYDGIQRPLERI 94 (578)
T ss_dssp CTTCEECTTSCBHHHH
T ss_pred HhhhhhCcCCCccccc
Confidence 9999999999999987
No 11
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=99.85 E-value=7.4e-21 Score=160.19 Aligned_cols=98 Identities=23% Similarity=0.252 Sum_probs=89.3
Q ss_pred eeEEEEEECCEEEEEcCC--CCCcCcEEEEEeCC--Cc----eEEEEEEE-EeCCEEEEEEccCCCCcccCCcEEEEcCC
Q psy5598 28 YKTVSGVNGPLVILDEVK--FPKYAEIVQLRLND--GS----YRAGQVLE-VSGSKAVVQVFEGTSGIDAKNTVCEFTGD 98 (128)
Q Consensus 28 ~G~V~~I~G~~i~v~g~~--~~~iGe~~~i~~~~--~~----~~~geVv~-~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~ 98 (128)
+|+|++|.|++++++|+. .+++||+|.|...+ +. ...+||++ +.++.+.+++|+++.||+.|+ +|+++|+
T Consensus 3 ~G~v~~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G~-~V~~tg~ 81 (473)
T 1sky_E 3 RGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGM-EVIDTGA 81 (473)
T ss_dssp EEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTC-EEEEEEE
T ss_pred ceEEEEEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCCC-EEEEcCC
Confidence 799999999999999984 48999999997522 33 47899998 899999999999999999995 9999999
Q ss_pred eeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 99 ILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 99 ~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+++||||++|||||+|++|+|||+++++
T Consensus 82 ~~~vpvg~~llGrv~d~lG~piD~~g~i 109 (473)
T 1sky_E 82 PISVPVGQVTLGRVFNVLGEPIDLEGDI 109 (473)
T ss_dssp ECEEECSGGGTTCEECTTSCBCSSSCCC
T ss_pred cceeeccccceeeEEeecCCccCccccc
Confidence 9999999999999999999999998775
No 12
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.85 E-value=4e-21 Score=159.96 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=89.5
Q ss_pred CceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCc---eEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCC--
Q psy5598 24 PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS---YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGD-- 98 (128)
Q Consensus 24 ~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~---~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~-- 98 (128)
+.+.+|+|++|.|++++++|+ .+++||+|+|...++. ...|||++|+++.+.++||+++.||++| +.|.++|+
T Consensus 6 ~~~~~g~v~~v~g~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~gl~~g-~~v~~~~~~~ 83 (438)
T 2dpy_A 6 AVRRYGRLTRATGLVLEATGL-QLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILPG-ARVYARNGHG 83 (438)
T ss_dssp -CCCCEEEEECSSSSEEEESC-CCCSSCEEEEEECSTTSCEEEEEEEEECCTTCEEEEESSCCTTCCTT-EEEEEC----
T ss_pred ccceeeEEEEEECcEEEEEeC-CCCCCCEEEEecCCCCccccEEEEEEEEcCCEEEEEEccCCCCCCCC-CEEEECCCcc
Confidence 556689999999999999998 7999999999864444 5899999999999999999999999999 59999999
Q ss_pred -----eeeEeCCCCCccceecCCcccccCCCCC
Q psy5598 99 -----ILRTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 99 -----~~~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
++++|+|++|||||+|++|+|+|+++++
T Consensus 84 ~~~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~ 116 (438)
T 2dpy_A 84 DGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAP 116 (438)
T ss_dssp ------CEEECSGGGTTEEECTTCCBSSSSCCC
T ss_pred ccccccEEEEcchhhhhhhhhccCCccCCCCCc
Confidence 9999999999999999999999997654
No 13
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=99.85 E-value=1.3e-22 Score=173.78 Aligned_cols=95 Identities=27% Similarity=0.424 Sum_probs=35.2
Q ss_pred eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCC
Q psy5598 27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSE 106 (128)
Q Consensus 27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~ 106 (128)
.+|+|.+|.|++++++|+.++++||+|+|.. ..+.|||++|++|.+.+|+|+++.||++|+ +|.+||++++|++|+
T Consensus 3 ~~G~V~~V~G~iv~~~g~~~~~~gElv~v~~---~~l~geVi~l~~d~~~i~v~e~t~Gi~~G~-~V~~tg~~lsV~vG~ 78 (588)
T 3mfy_A 3 AKGRIIRVTGPLVVADGMKGAKMYEVVRVGE---LGLIGEIIRLEGDKAVIQVYEETAGVRPGE-PVVGTGASLSVELGP 78 (588)
T ss_dssp -------------------------------------------------------------CCC-CCSSSSSCCEEEEST
T ss_pred ceeEEEEEECCEEEEEcCCCCccCCEEEEcC---CceEEEEEEecCCeEEEEEccCCCCCCCCC-EEEEcCCCCEEEeCH
Confidence 4799999999999999998899999999952 248999999999999999999999999995 999999999999999
Q ss_pred CCccceecCCcccccCCCC
Q psy5598 107 DMLGRVFNGSGKPIDKDCC 125 (128)
Q Consensus 107 ~lLGRViD~lG~PlDg~~~ 125 (128)
+|||||+|++|+|||++++
T Consensus 79 gLLGrV~DglgrPLd~~~~ 97 (588)
T 3mfy_A 79 RLLTSIYDGIQRPLEVIRE 97 (588)
T ss_dssp TCTTCEEETTCCSSSSCCC
T ss_pred HHHhhccCCCCCcccCccc
Confidence 9999999999999999854
No 14
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=99.83 E-value=3.1e-20 Score=157.14 Aligned_cols=98 Identities=21% Similarity=0.324 Sum_probs=88.4
Q ss_pred eeEEEEEECCEEEEEcCC--CCCcCcEEEEEeCC--Cc--eEEEEEEE-EeCCEEEEEEccCCCCcccCCcEEEEcCCee
Q psy5598 28 YKTVSGVNGPLVILDEVK--FPKYAEIVQLRLND--GS--YRAGQVLE-VSGSKAVVQVFEGTSGIDAKNTVCEFTGDIL 100 (128)
Q Consensus 28 ~G~V~~I~G~~i~v~g~~--~~~iGe~~~i~~~~--~~--~~~geVv~-~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~ 100 (128)
+|+|++|.|++++++|+. .+.+|+.|+|...+ +. .+.+||++ +.++.+.+++|++++||++| ++|.+||+++
T Consensus 20 ~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G-~~V~~tg~~~ 98 (498)
T 1fx0_B 20 LGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRG-MEVIDTGAPL 98 (498)
T ss_dssp CEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTT-CEEEECSSSC
T ss_pred CceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCC-CEEEecCCcc
Confidence 699999999999999984 38999999996423 33 47899999 88999999999999999999 5999999999
Q ss_pred eEeCCCCCccceecCCcccccCCCCC
Q psy5598 101 RTPVSEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 101 ~Vpvg~~lLGRViD~lG~PlDg~~~~ 126 (128)
+||||++|||||+|++|+|||+++++
T Consensus 99 ~vpvG~~lLGRV~d~lG~PiD~~~~i 124 (498)
T 1fx0_B 99 SVPVGGPTLGRIFNVLGEPVDNLRPV 124 (498)
T ss_dssp EEEESSTTTTCEECTTSCBCSSSSCC
T ss_pred eEecCccceeeEEcccccCCCCcCCc
Confidence 99999999999999999999998775
No 15
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=99.82 E-value=6.8e-20 Score=154.56 Aligned_cols=98 Identities=22% Similarity=0.290 Sum_probs=88.7
Q ss_pred eeeEEEEEECCEEEEEcC-CCCCcCcEEEEEeCCCceEEEEEEE-EeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeC
Q psy5598 27 TYKTVSGVNGPLVILDEV-KFPKYAEIVQLRLNDGSYRAGQVLE-VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPV 104 (128)
Q Consensus 27 ~~G~V~~I~G~~i~v~g~-~~~~iGe~~~i~~~~~~~~~geVv~-~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpv 104 (128)
.+|+|++|.|++++++|+ ..+.+++.|.|... +....+||++ +.++.+.+++|+++.||++| ++|++||++++|||
T Consensus 13 ~~G~v~~v~G~vv~v~~~~~~~~i~~~~~i~~~-~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G-~~V~~tg~~~~vpv 90 (482)
T 2ck3_D 13 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGR-ETRLVLEVAQHLGESTVRTIAMDGTEGLVRG-QKVLDSGAPIRIPV 90 (482)
T ss_dssp CEEEEEEEETTEEEEEESSCCCCTTCEEEESSC-SSCCEEEEEEEEETTEEEEEESSCCTTCBTT-CEEEECSSSCEEEC
T ss_pred cceEEEEEEccEEEEEecCccCcccceEEEeeC-CCcEEEEEeEEecCCeEEEEeccCccCCCCC-CEEEEcCCcceeec
Confidence 489999999999999996 35899999998532 3357899999 89999999999999999999 59999999999999
Q ss_pred CCCCccceecCCcccccCCCCC
Q psy5598 105 SEDMLGRVFNGSGKPIDKDCCS 126 (128)
Q Consensus 105 g~~lLGRViD~lG~PlDg~~~~ 126 (128)
|++|||||||++|+|||+++++
T Consensus 91 G~~lLGRV~d~lG~PiDg~~~~ 112 (482)
T 2ck3_D 91 GPETLGRIMNVIGEPIDERGPI 112 (482)
T ss_dssp SGGGBTCEECTTSCBCSSSCSC
T ss_pred cccccCCEEcccCcCcCCcCCC
Confidence 9999999999999999998765
No 16
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=47.14 E-value=89 Score=23.48 Aligned_cols=82 Identities=6% Similarity=-0.019 Sum_probs=39.4
Q ss_pred eeEEEEEECCEEEEEcCCCCCcCc--EEEEEeCCCceEEEEEEEEeC--CEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598 28 YKTVSGVNGPLVILDEVKFPKYAE--IVQLRLNDGSYRAGQVLEVSG--SKAVVQVFEGTSGIDAKNTVCEFTGDILRTP 103 (128)
Q Consensus 28 ~G~V~~I~G~~i~v~g~~~~~iGe--~~~i~~~~~~~~~geVv~~~~--~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp 103 (128)
.|+|+++....-+|.-+.+...-. -|.+.. .....|-+.+-.. +.+.+.-+.....++.|| .|.-+|-.-..|
T Consensus 110 VG~V~~V~~~~S~V~litd~~~~s~v~v~v~~--s~~~~Gil~G~~~~~~~l~l~~i~~~~~i~~GD-~VvTSGl~gifP 186 (255)
T 2j5u_A 110 IGKVTTTGAKSATVELLTSSDVKNRVSAKVQG--KENAFGIINGYDSDTKLLELKQLPYDMKFKKGQ-KVVTSGLGGKFP 186 (255)
T ss_dssp EEEEEEECSSCEEEEETTCCCTTCCEEEEECS--SSCEEEEEEEEETTTTEEEEEEEETTSCCCTTC-EEEECCTTSSSC
T ss_pred EEEEEEECCCeEEEEEEECCCCCeeEEEEEec--CCcEEEEEEccCCCCCcEEEEECCCCCCCCCCC-EEEECCCCCcCC
Confidence 456666655555555443222100 123321 1124566666654 555565566666677775 666655333333
Q ss_pred CCCCCcccee
Q psy5598 104 VSEDMLGRVF 113 (128)
Q Consensus 104 vg~~lLGRVi 113 (128)
.| =..|+|.
T Consensus 187 ~G-ipVG~V~ 195 (255)
T 2j5u_A 187 AG-IFIGTIE 195 (255)
T ss_dssp TT-CEEEEEE
T ss_pred CC-CEEEEEE
Confidence 32 2345554
No 17
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.07 E-value=23 Score=20.79 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=26.5
Q ss_pred CCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEc
Q psy5598 46 FPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVF 80 (128)
Q Consensus 46 ~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~ 80 (128)
....||.|+|....-....|.|..++.+++.+++.
T Consensus 7 ~f~~GD~V~V~~Gpf~g~~G~V~evd~e~v~V~v~ 41 (59)
T 2e6z_A 7 GFQPGDNVEVCEGELINLQGKILSVDGNKITIMPK 41 (59)
T ss_dssp SCCTTSEEEECSSTTTTCEEEECCCBTTEEEEEEC
T ss_pred cCCCCCEEEEeecCCCCCEEEEEEEeCCEEEEEEE
Confidence 36789999997422123899999999998888775
No 18
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=37.48 E-value=45 Score=22.30 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=28.0
Q ss_pred EEEeCCCc-eEEEEEEEEeC--CEEEEEEccCCCCcccCCcEEEEcC
Q psy5598 54 QLRLNDGS-YRAGQVLEVSG--SKAVVQVFEGTSGIDAKNTVCEFTG 97 (128)
Q Consensus 54 ~i~~~~~~-~~~geVv~~~~--~~v~l~~~~~~~Gi~~G~~~V~~tg 97 (128)
.|...+|+ +..+.|.++++ +.++-+.-+...++.-|| .|++++
T Consensus 7 ~V~D~dGE~p~~~~I~~Is~~~~g~Vt~~~~~~H~l~dGD-~V~Fse 52 (112)
T 2v31_A 7 VLTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFETGD-FVSFSE 52 (112)
T ss_dssp CCCCCCCSSCCEEEEEEECCSSSEEEEECTTCCCCCCTTC-EEEECS
T ss_pred EEECCCCCccceeeeeeeecCCCcEEEEecCCccCCcCCC-EEEEEe
Confidence 34444565 57888888853 333334445678999996 999874
No 19
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=36.43 E-value=83 Score=22.28 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=34.5
Q ss_pred CCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeE
Q psy5598 47 PKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRT 102 (128)
Q Consensus 47 ~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~V 102 (128)
+..|..+.+..++|....+.|+.++++.+++=.=.+.. | -.+.|.-+..+|
T Consensus 113 ~~~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD~NHPLA----G-k~L~F~vev~~v 163 (169)
T 4dt4_A 113 PEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLA----G-QTVHFDIEVLEI 163 (169)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEEETTEEEEECSCTTT----T-CCEEEEEEEEEE
T ss_pred CCCCcEEEEECCCCCEEEEEEEEEcCCEEEEeCCCccC----C-CEEEEEEEEEEE
Confidence 67899998887667667899999999988774333333 4 245554444444
No 20
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=35.52 E-value=86 Score=21.47 Aligned_cols=53 Identities=11% Similarity=-0.005 Sum_probs=36.9
Q ss_pred CCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598 46 FPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP 103 (128)
Q Consensus 46 ~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp 103 (128)
.+..|..+.+...+|....+.|+.++++.+++=-=.+.. |. .+.|.-+...|.
T Consensus 93 ~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLA----G~-~L~F~v~v~~v~ 145 (151)
T 2kr7_A 93 ELEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLA----GK-TLAFRFKVLGFR 145 (151)
T ss_dssp CCCTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTS----CC-CEEEEEEEEEEE
T ss_pred CCccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCC----CC-EEEEEEEEEEee
Confidence 478899999988777667899999999998865444444 32 455544444443
No 21
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=35.32 E-value=80 Score=19.54 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=30.5
Q ss_pred CCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCC
Q psy5598 46 FPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTS 84 (128)
Q Consensus 46 ~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~ 84 (128)
....||-|.++-.||.-.+|.||....+.+++.-.+.++
T Consensus 15 ~~~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~ 53 (69)
T 2xk0_A 15 TYALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSE 53 (69)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCE
T ss_pred ccccCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcc
Confidence 367899998887777778999999888888777665543
No 22
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=33.45 E-value=1e+02 Score=21.34 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=35.4
Q ss_pred CCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598 46 FPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP 103 (128)
Q Consensus 46 ~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp 103 (128)
.+..|..+.+..++|....+.|+.++++.+++=-=.+.. | -.+.|.-+...|.
T Consensus 84 ~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLA----G-k~L~F~vev~~v~ 136 (158)
T 3cgm_A 84 EVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLA----G-KDLDFQVEVVKVR 136 (158)
T ss_dssp CCCTTCEEEEEETTTEEEEEEEEEEETTEEEEECSCTTT----T-CCEEEEEEEEEEE
T ss_pred CCccCCEEEEECCCCCEEEEEEEEECCCEEEEeCCcccc----C-CEEEEEEEEEEee
Confidence 477899999887767667899999999998764333333 4 2455554444443
No 23
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=28.19 E-value=90 Score=20.10 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=38.1
Q ss_pred HHHhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCC--CceEEEEEEEEeCCEEEEE
Q psy5598 14 LAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLND--GSYRAGQVLEVSGSKAVVQ 78 (128)
Q Consensus 14 ~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~--~~~~~geVv~~~~~~v~l~ 78 (128)
++.++.|..+..+..|.+.+-.+..-.++ .. |.+..+...+ |. -.|.|+.++++.+.+.
T Consensus 13 kepLE~y~L~~L~mvG~l~~~~~~~ALV~-~d----g~v~~V~~G~yiG~-n~G~I~~I~~~~I~l~ 73 (93)
T 2y4x_A 13 KQFLEGFNIETFEMVGTLSNAQGTFALVK-GA----GGVHRVRVGDYLGR-NDGKVVGISEGKIDVI 73 (93)
T ss_dssp CCGGGGSCGGGCEEEEEEEETTEEEEEEE-ET----TEEEEECTTCEETT-TTEEEEEEETTEEEEE
T ss_pred CcccccCchhheEEEEEEccCCeEEEEEE-eC----CCEEEEccCCEecc-CCCEEEEEeCCeEEEE
Confidence 35678999999999999887555444555 32 2222232111 21 3689999999998775
No 24
>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}
Probab=27.78 E-value=1.8e+02 Score=21.37 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=40.9
Q ss_pred CCCCcCcEEEEEeCCCc--eEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598 45 KFPKYAEIVQLRLNDGS--YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP 103 (128)
Q Consensus 45 ~~~~iGe~~~i~~~~~~--~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp 103 (128)
.++..|+.|.+-..|.. +..|+.++++.+++++..-++..| +.+|.|-...+.|.
T Consensus 252 ~g~~~G~~V~v~p~d~g~~~~~g~l~~~~~~~~~~~~~~~~~~----~~~vh~pr~g~~~~ 308 (310)
T 3ic8_A 252 NGFKAGDKVAIAAVDYGVEAVEGELMFTGREELILRREDNRAG----VVHVHFPRLGFRVE 308 (310)
T ss_dssp TCCCTTCEEEEEESSCGGGCEEEEEEEECSSCEEEEEEETTTE----EEEEEECSTTEEEE
T ss_pred ccCCCCCEEEEeeccCCCCCCceEEEEecCcEEEEEEeCCCCC----eEEEEcCCCCceec
Confidence 45889999999876532 689999999999999988655443 24677765555553
No 25
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=27.43 E-value=1.6e+02 Score=20.61 Aligned_cols=70 Identities=14% Similarity=0.093 Sum_probs=47.9
Q ss_pred eeeEEEEEECCEEEEEcCCCCC--cCcEEEEEeCCCceEEEEEEEEeC--CEEEEEEccCCCCcccCCcEEEEcCC
Q psy5598 27 TYKTVSGVNGPLVILDEVKFPK--YAEIVQLRLNDGSYRAGQVLEVSG--SKAVVQVFEGTSGIDAKNTVCEFTGD 98 (128)
Q Consensus 27 ~~G~V~~I~G~~i~v~g~~~~~--iGe~~~i~~~~~~~~~geVv~~~~--~~v~l~~~~~~~Gi~~G~~~V~~tg~ 98 (128)
..|+|+++....-+|.-+.+.. -.=-|.+...++ ...|-+.+-.. +.+.+.-+.....++.|| .|.-+|-
T Consensus 47 lVG~V~~V~~~~S~V~Litd~~~~s~v~v~v~~~~~-~~~Gil~G~~~~~~~l~l~~i~~~~~i~~GD-~vvTSGl 120 (172)
T 2qf4_A 47 LIGSVSKVEENSTIVNLLTNTENADKISVKIQHGST-TIYGIIIGYDKENDVLKISQLNSNSDISAGD-KVTTGGL 120 (172)
T ss_dssp EEEEEEEECSSCEEEEETTCSBCCSCCEEEEEETTE-EEEEEEEEEETTTTEEEEECCSCCCCCCTTC-EEEEECC
T ss_pred cEEEEEEECCCeEEEEEEECCCCCEEEEEEEEcCCC-CEEEEEEccCCCCCeEEEEECCCCCCCCCCC-EEEECCC
Confidence 4799999999888887654443 221255541122 25788888765 677777778888999997 8887764
No 26
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=26.90 E-value=1.5e+02 Score=20.03 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=29.4
Q ss_pred CCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCC
Q psy5598 44 VKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGT 83 (128)
Q Consensus 44 ~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~ 83 (128)
++.+.+|+.|.....++.-..|.|+++.......+-|.+-
T Consensus 3 ~~~v~vGq~V~akh~ngryy~~~V~~~~~~~~y~V~F~Dg 42 (118)
T 2qqr_A 3 MQSITAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDG 42 (118)
T ss_dssp SSCCCTTCEEEEECTTSSEEEEEEEEEEEEEEEEEEETTS
T ss_pred cceeccCCEEEEECCCCCEEeEEEEEEeeEEEEEEEcCCC
Confidence 3468999999877555656789999987766666666543
No 27
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=25.63 E-value=1.3e+02 Score=20.19 Aligned_cols=60 Identities=5% Similarity=0.096 Sum_probs=39.7
Q ss_pred HHHhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCC--CceEEEEEEEEeCCEEEEEE
Q psy5598 14 LAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLND--GSYRAGQVLEVSGSKAVVQV 79 (128)
Q Consensus 14 ~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~--~~~~~geVv~~~~~~v~l~~ 79 (128)
++.++.|..+..+..|.+.+-.+..-.+. .. |.+..|...+ |. -.|.|+.++++.+.+.=
T Consensus 16 kepLE~y~Ld~LkmvGtl~~~~~~~ALV~-~d----G~vyrVk~G~yiG~-N~GrI~~It~~~I~l~E 77 (113)
T 2ivw_A 16 KETLEKFSLENMRYVGILKSGQKVSGFIE-AE----GYVYTVGVGNYLGQ-NYGRIESITDDSIVLNE 77 (113)
T ss_dssp SSGGGGSCTTTEEEEEEEECSSSEEEEEE-ET----TEEEEECSSEEETT-TEEEEEEEETTEEEEEE
T ss_pred CcccccCchhheEEEEEEccCCeEEEEEE-eC----CcEEEEccCCEecc-CCCEEEEEeCCeEEEEE
Confidence 35679999999999999988666555555 12 2222332110 22 48999999999988753
No 28
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=24.77 E-value=1.1e+02 Score=22.51 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=23.3
Q ss_pred EEEECCEEEEEcC--CCCCcCcEEEEEeCCCceEEEEEE
Q psy5598 32 SGVNGPLVILDEV--KFPKYAEIVQLRLNDGSYRAGQVL 68 (128)
Q Consensus 32 ~~I~G~~i~v~g~--~~~~iGe~~~i~~~~~~~~~geVv 68 (128)
.+-.|..|..+|. .+..+||.+++...++..+.|.|.
T Consensus 151 ~~~~g~~i~~~G~AL~~G~~Gd~IrVr~~Sgkiv~g~V~ 189 (219)
T 3tee_A 151 ANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQIVSGTVD 189 (219)
T ss_dssp EECSSCEEEEEEEECSCBCTTSEEEEEETTSCEEEEEEC
T ss_pred EecCCEEEEEEEEEccccCCCCEEEEECCCCCEEEEEEe
Confidence 3344555555554 357888888887655556666664
No 29
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=22.72 E-value=1.7e+02 Score=19.24 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=35.7
Q ss_pred HhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCC--Cc--eEEEEEEEEeCCE
Q psy5598 16 VTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLND--GS--YRAGQVLEVSGSK 74 (128)
Q Consensus 16 ~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~--~~--~~~geVv~~~~~~ 74 (128)
.+..|.-...+..|+|.++.|..+.+.-.. |..+.|..+. .. ...-||++.-.+.
T Consensus 12 ~L~~~~g~~VrivGkV~~~~g~~~~l~s~d----~~~Vtv~l~~~~~~~~~~~vEViG~V~~~ 70 (114)
T 4gop_A 12 MLGQYVGQTVRIVGKVHKVTGNTLLMQTSD----LGNVEIAMTPDSDVSSSTFVEVTGKVSDA 70 (114)
T ss_dssp TGGGGTTSEEEEEEEEEEEETTEEEEECTT----SCEEEEECCSSCCGGGCSEEEEEEEECTT
T ss_pred HHHhhCCCeEEEEEEEeeeCCCEEEEEeCC----CCEEEEEeCCCCCcccCcEEEEEEEEcCC
Confidence 346677778888999999999888888332 2345555321 11 2478888875443
No 30
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=22.57 E-value=99 Score=19.00 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=24.0
Q ss_pred CCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEE
Q psy5598 47 PKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQV 79 (128)
Q Consensus 47 ~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~ 79 (128)
...|+-|.+....-+--.|.|+.++++.+.+..
T Consensus 18 F~~GDHVkVi~G~~~getGlVV~v~~d~v~v~S 50 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDTGLIVRVEENFVILFS 50 (69)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEECSSCEEEEE
T ss_pred ccCCCeEEEeccEEcCceEEEEEEeCCEEEEEe
Confidence 779999998642111257999999999876654
No 31
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=22.05 E-value=1.5e+02 Score=22.04 Aligned_cols=36 Identities=17% Similarity=0.072 Sum_probs=28.5
Q ss_pred CCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEcc
Q psy5598 46 FPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFE 81 (128)
Q Consensus 46 ~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~ 81 (128)
..+.||.+.+.+.+|....|+|..++.+.+.+...+
T Consensus 33 R~~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i~~ 68 (251)
T 4e8b_A 33 RMGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLE 68 (251)
T ss_dssp CCCSCCEEEEECSSSEEEEEEEEEECSSCEEEEEEE
T ss_pred cCCCCCEEEEEeCCCcEEEEEEEEeecceEEEEEee
Confidence 378899999886555568899999999988776654
No 32
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=21.50 E-value=1.9e+02 Score=21.77 Aligned_cols=37 Identities=19% Similarity=0.043 Sum_probs=29.6
Q ss_pred CCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccC
Q psy5598 46 FPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEG 82 (128)
Q Consensus 46 ~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~ 82 (128)
..+.||.+.+...+|....|+|..++.+.+.+...+.
T Consensus 36 Rl~~Gd~i~l~dg~G~~~~a~I~~~~~~~~~~~i~~~ 72 (268)
T 1vhk_A 36 RMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEW 72 (268)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEEEE
T ss_pred cCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEEEEE
Confidence 4789999998865566789999999999888776653
No 33
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=20.84 E-value=27 Score=25.85 Aligned_cols=15 Identities=40% Similarity=0.895 Sum_probs=12.7
Q ss_pred CccceecCCcccccC
Q psy5598 108 MLGRVFNGSGKPIDK 122 (128)
Q Consensus 108 lLGRViD~lG~PlDg 122 (128)
+-|||+|..|+|+.+
T Consensus 55 v~G~V~D~~G~Pv~~ 69 (209)
T 2bum_A 55 LEGQVFDGLGLPLRD 69 (209)
T ss_dssp EEECEECTTSCBCSS
T ss_pred EEEEEECCCCCCCCC
Confidence 458999999999965
No 34
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.33 E-value=1.6e+02 Score=18.01 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=27.1
Q ss_pred CCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccC
Q psy5598 46 FPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEG 82 (128)
Q Consensus 46 ~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~ 82 (128)
..+.|+.|.-.-.|+.-..|.|..++++......|.+
T Consensus 9 ~~kvGd~clA~wsDg~~Y~A~I~~v~~~~~~~V~f~D 45 (74)
T 2equ_A 9 DFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYD 45 (74)
T ss_dssp CCCTTCEEEEECSSSSEEEEEEEEESTTSSEEEEETT
T ss_pred CCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEec
Confidence 4789999997755777789999999874444444543
No 35
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=20.01 E-value=29 Score=25.56 Aligned_cols=15 Identities=33% Similarity=0.917 Sum_probs=12.6
Q ss_pred CccceecCCcccccC
Q psy5598 108 MLGRVFNGSGKPIDK 122 (128)
Q Consensus 108 lLGRViD~lG~PlDg 122 (128)
+-|||+|..|+|+.+
T Consensus 51 v~G~V~D~~G~Pv~~ 65 (200)
T 3t63_A 51 LLGQVYDGNGHLVRD 65 (200)
T ss_dssp EEECEECTTSCBCSS
T ss_pred EEEEEECCCCCCCCC
Confidence 348999999999965
Done!