RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5598
         (128 letters)



>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
           ATP synthase {Spinach (Spinacia oleracea), chloroplast
           [TaxId: 3562]}
          Length = 276

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 13/19 (68%), Positives = 13/19 (68%)

Query: 103 PVSEDMLGRVFNGSGKPID 121
           PVSE  LGRV N   KPID
Sbjct: 3   PVSEAYLGRVINALAKPID 21


>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
           ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 276

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 100 LRTPVSEDMLGRVFNGSGKPID 121
           +R PV  + LGR+ N  G+PID
Sbjct: 1   IRIPVGPETLGRIMNVIGEPID 22


>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
           ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
          Length = 285

 Score = 41.3 bits (97), Expect = 7e-06
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 103 PVSEDMLGRVFNGSGKPID 121
           PV E++LGRV +  G  ID
Sbjct: 4   PVGEELLGRVVDALGNAID 22


>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate
          isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
          Length = 340

 Score = 27.8 bits (61), Expect = 0.40
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 26 ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAV 76
          +  KT+      L +LD+ K P   E V+ + ++    A + + V G+ A+
Sbjct: 1  LKTKTMEWSGNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAI 51


>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania
          major [TaxId: 5664]}
          Length = 374

 Score = 25.9 bits (56), Expect = 1.8
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKA 75
          T +++    G L +LD+ K P       +   +  + A + + V G+ A
Sbjct: 8  TLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPA 56


>g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate
          isomerase Ypr118W {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 402

 Score = 25.6 bits (55), Expect = 2.5
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 26 ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKA 75
          I +      N  + +LD++  P   + V +   D  Y   + ++V G+ A
Sbjct: 6  IVFDRSEPENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQVRGAPA 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0474    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 458,911
Number of extensions: 19074
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 7
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.9 bits)