BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5599
(79 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/32 (78%), Positives = 31/32 (96%)
Query: 8 KEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
K ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct: 6 KNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 37
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 40 DLKDVTSNVHYENFRCRKLAGLGTDG 65
DLKDVT+NVHYEN+R RKLA + +G
Sbjct: 277 DLKDVTNNVHYENYRSRKLAAVTYNG 302
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 31/38 (81%)
Query: 2 PERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
P + I E GY+GFANLPNQV RK+VKKGFEFTLMVV
Sbjct: 6 PTQFINPETPGYVGFANLPNQVHRKSVKKGFEFTLMVV 43
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 40 DLKDVTSNVHYENFRCRKL 58
DL++VT ++HYENFR +L
Sbjct: 286 DLQEVTQDLHYENFRSERL 304
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 30/39 (76%)
Query: 1 MPERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
P + I E GY+GFANLPNQV RK+VKKGFEFTL VV
Sbjct: 5 QPTQFINPETPGYVGFANLPNQVHRKSVKKGFEFTLXVV 43
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 40 DLKDVTSNVHYENFRCRKL 58
DL++VT ++HYENFR +L
Sbjct: 286 DLQEVTQDLHYENFRSERL 304
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/23 (82%), Positives = 21/23 (91%)
Query: 17 ANLPNQVFRKAVKKGFEFTLMVV 39
+NLPNQV RK+VKKGFEFTL VV
Sbjct: 2 SNLPNQVHRKSVKKGFEFTLXVV 24
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 40 DLKDVTSNVHYENFRCRKL 58
DL++VT ++HYENFR +L
Sbjct: 267 DLQEVTQDLHYENFRSERL 285
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 20/22 (90%)
Query: 40 DLKDVTSNVHYENFRCRKLAGL 61
DLKDVT+NVHYEN+R RKLA +
Sbjct: 249 DLKDVTNNVHYENYRSRKLAAV 270
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/21 (80%), Positives = 19/21 (90%)
Query: 40 DLKDVTSNVHYENFRCRKLAG 60
DLKDVT+NVHYEN+R RKLA
Sbjct: 254 DLKDVTNNVHYENYRSRKLAA 274
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 12 GYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKL 58
G I NL + F A+ + F + DLK+VT N+HYE +R ++L
Sbjct: 226 GIIEVENLNHCEF--ALLRDFVIRTHLQDLKEVTHNIHYETYRAKRL 270
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 4 RKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
R +P + G++GF +LP+Q+ K+V +GF F ++ V
Sbjct: 15 RTVP--LAGHVGFDSLPDQLVNKSVSQGFCFNILCV 48
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 40 DLKDVTSNVHYENFRCRKL 58
DL++VT ++HYENFR +L
Sbjct: 254 DLQEVTQDLHYENFRSERL 272
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 11/11 (100%), Positives = 11/11 (100%)
Query: 29 KKGFEFTLMVV 39
KKGFEFTLMVV
Sbjct: 1 KKGFEFTLMVV 11
>pdb|1JYH|A Chain A, Crystal Structure Of The Escherichia Coli Sbmc Protein
(Aka Gyrase Inhibitory Protein Gyri, Aka Yeeb)
Length = 157
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 24 FRKAVKKGFEFTLMVVDLKDVTSN----VHYEN 52
+ + VKKGFE +M VD K++ V+Y+N
Sbjct: 22 WEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDN 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,595,916
Number of Sequences: 62578
Number of extensions: 87914
Number of successful extensions: 187
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 24
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)