Query psy5599
Match_columns 79
No_of_seqs 102 out of 372
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 21:38:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sop_A Neuronal-specific septi 99.1 2.9E-12 9.8E-17 91.7 -3.7 45 14-58 225-270 (270)
2 2qnr_A Septin-2, protein NEDD5 99.0 7.6E-12 2.6E-16 90.3 -3.1 52 14-66 241-293 (301)
3 2qag_B Septin-6, protein NEDD5 98.8 5.9E-11 2E-15 90.9 -5.8 50 14-63 258-308 (427)
4 2qag_A Septin-2, protein NEDD5 98.7 6.1E-10 2.1E-14 82.2 -2.5 49 14-63 260-309 (361)
5 3t5d_A Septin-7; GTP-binding p 98.6 1.6E-09 5.6E-14 76.1 -3.0 46 14-59 227-273 (274)
6 2qag_C Septin-7; cell cycle, c 98.5 1.4E-09 4.8E-14 82.6 -4.8 49 13-61 249-298 (418)
7 2qag_A Septin-2, protein NEDD5 98.1 4.1E-07 1.4E-11 67.0 0.9 54 3-56 7-60 (361)
8 1h65_A Chloroplast outer envel 97.3 7.6E-05 2.6E-09 51.9 1.8 51 9-59 7-65 (270)
9 2qag_C Septin-7; cell cycle, c 97.1 8.8E-05 3E-09 56.2 0.7 52 7-58 5-56 (418)
10 3t5d_A Septin-7; GTP-binding p 97.0 0.00016 5.4E-09 50.5 1.1 32 28-59 3-34 (274)
11 2qnr_A Septin-2, protein NEDD5 96.6 0.00062 2.1E-08 48.7 1.5 39 18-56 3-41 (301)
12 2qag_B Septin-6, protein NEDD5 96.3 0.0016 5.5E-08 49.7 2.4 53 6-58 15-67 (427)
13 3sop_A Neuronal-specific septi 96.3 0.0018 6.3E-08 45.8 2.3 29 32-60 1-29 (270)
14 2p5s_A RAS and EF-hand domain 95.4 0.0052 1.8E-07 39.8 1.4 46 13-58 8-53 (199)
15 1z2a_A RAS-related protein RAB 93.3 0.055 1.9E-06 33.1 2.7 29 32-60 4-32 (168)
16 1z08_A RAS-related protein RAB 93.2 0.059 2E-06 33.1 2.6 29 31-59 4-32 (170)
17 1ek0_A Protein (GTP-binding pr 93.1 0.064 2.2E-06 32.7 2.7 28 33-60 3-30 (170)
18 1u8z_A RAS-related protein RAL 92.9 0.072 2.5E-06 32.3 2.7 27 33-59 4-30 (168)
19 1z0j_A RAB-22, RAS-related pro 92.8 0.073 2.5E-06 32.6 2.7 27 33-59 6-32 (170)
20 1r2q_A RAS-related protein RAB 92.7 0.079 2.7E-06 32.3 2.7 29 32-60 5-33 (170)
21 1c1y_A RAS-related protein RAP 92.7 0.077 2.6E-06 32.4 2.6 27 33-59 3-29 (167)
22 2ce2_X GTPase HRAS; signaling 92.7 0.08 2.7E-06 32.0 2.7 28 33-60 3-30 (166)
23 1kao_A RAP2A; GTP-binding prot 92.6 0.08 2.7E-06 32.1 2.7 28 33-60 3-30 (167)
24 1g16_A RAS-related protein SEC 92.6 0.051 1.7E-06 33.3 1.8 27 33-59 3-29 (170)
25 4dsu_A GTPase KRAS, isoform 2B 92.6 0.084 2.9E-06 33.0 2.8 28 33-60 4-31 (189)
26 1wms_A RAB-9, RAB9, RAS-relate 92.5 0.057 1.9E-06 33.5 1.9 28 32-59 6-33 (177)
27 2erx_A GTP-binding protein DI- 92.5 0.081 2.8E-06 32.3 2.6 27 33-59 3-29 (172)
28 1z0f_A RAB14, member RAS oncog 92.5 0.082 2.8E-06 32.6 2.6 30 31-60 13-42 (179)
29 2y8e_A RAB-protein 6, GH09086P 92.3 0.088 3E-06 32.5 2.6 29 32-60 13-41 (179)
30 3bc1_A RAS-related protein RAB 92.3 0.063 2.2E-06 33.5 1.9 29 31-59 9-37 (195)
31 2fn4_A P23, RAS-related protei 92.2 0.064 2.2E-06 33.2 1.9 28 32-59 8-35 (181)
32 1r8s_A ADP-ribosylation factor 92.2 0.054 1.9E-06 33.2 1.5 26 34-59 1-26 (164)
33 1z06_A RAS-related protein RAB 92.2 0.095 3.3E-06 33.2 2.7 29 32-60 19-47 (189)
34 3kkq_A RAS-related protein M-R 92.1 0.1 3.5E-06 32.7 2.7 30 31-60 16-45 (183)
35 2efe_B Small GTP-binding prote 92.0 0.1 3.5E-06 32.4 2.7 30 31-60 10-39 (181)
36 1ky3_A GTP-binding protein YPT 92.0 0.071 2.4E-06 33.0 1.9 29 31-59 6-34 (182)
37 2a9k_A RAS-related protein RAL 92.0 0.1 3.4E-06 32.4 2.6 28 32-59 17-44 (187)
38 3tw8_B RAS-related protein RAB 91.9 0.071 2.4E-06 33.0 1.8 29 31-59 7-35 (181)
39 3con_A GTPase NRAS; structural 91.9 0.075 2.6E-06 33.6 2.0 27 33-59 21-47 (190)
40 2g6b_A RAS-related protein RAB 91.9 0.069 2.3E-06 33.2 1.7 29 31-59 8-36 (180)
41 2hxs_A RAB-26, RAS-related pro 91.9 0.094 3.2E-06 32.5 2.4 27 32-58 5-31 (178)
42 3dz8_A RAS-related protein RAB 91.9 0.079 2.7E-06 33.8 2.0 29 31-59 21-49 (191)
43 1mh1_A RAC1; GTP-binding, GTPa 91.9 0.12 4.2E-06 32.1 2.9 28 33-60 5-32 (186)
44 2bme_A RAB4A, RAS-related prot 91.9 0.11 3.7E-06 32.5 2.6 30 31-60 8-37 (186)
45 2oil_A CATX-8, RAS-related pro 91.8 0.11 3.8E-06 32.9 2.7 30 31-60 23-52 (193)
46 2bov_A RAla, RAS-related prote 91.7 0.11 3.8E-06 33.0 2.6 28 32-59 13-40 (206)
47 3clv_A RAB5 protein, putative; 91.7 0.11 3.6E-06 32.5 2.5 29 31-59 5-33 (208)
48 2cxx_A Probable GTP-binding pr 91.7 0.071 2.4E-06 33.4 1.6 26 34-59 2-27 (190)
49 2nzj_A GTP-binding protein REM 91.6 0.074 2.5E-06 32.8 1.6 28 32-59 3-30 (175)
50 3tkl_A RAS-related protein RAB 91.5 0.13 4.4E-06 32.4 2.7 30 31-60 14-43 (196)
51 1upt_A ARL1, ADP-ribosylation 91.5 0.076 2.6E-06 32.6 1.6 28 32-59 6-33 (171)
52 2fg5_A RAB-22B, RAS-related pr 91.4 0.12 4.1E-06 33.0 2.6 29 31-59 21-49 (192)
53 2a5j_A RAS-related protein RAB 91.4 0.091 3.1E-06 33.5 1.9 29 31-59 19-47 (191)
54 1ksh_A ARF-like protein 2; sma 91.3 0.068 2.3E-06 33.7 1.3 27 31-57 16-42 (186)
55 2gf9_A RAS-related protein RAB 91.3 0.093 3.2E-06 33.3 1.9 29 31-59 20-48 (189)
56 3q85_A GTP-binding protein REM 91.3 0.094 3.2E-06 32.2 1.9 23 33-55 2-24 (169)
57 1zbd_A Rabphilin-3A; G protein 91.3 0.13 4.3E-06 32.9 2.5 29 31-59 6-34 (203)
58 2iwr_A Centaurin gamma 1; ANK 91.1 0.091 3.1E-06 32.8 1.7 28 33-60 7-34 (178)
59 2gf0_A GTP-binding protein DI- 91.0 0.14 4.7E-06 32.4 2.5 29 31-59 6-34 (199)
60 3reg_A RHO-like small GTPase; 91.0 0.15 5.1E-06 32.4 2.7 29 31-59 21-49 (194)
61 2dyk_A GTP-binding protein; GT 90.9 0.091 3.1E-06 31.9 1.5 24 34-57 2-25 (161)
62 3oes_A GTPase rhebl1; small GT 90.9 0.16 5.4E-06 32.7 2.7 31 30-60 21-51 (201)
63 1x3s_A RAS-related protein RAB 90.9 0.16 5.4E-06 31.9 2.7 27 33-59 15-41 (195)
64 3def_A T7I23.11 protein; chlor 90.8 0.091 3.1E-06 36.0 1.6 44 15-58 10-61 (262)
65 2h17_A ADP-ribosylation factor 90.7 0.087 3E-06 33.3 1.3 27 32-58 20-46 (181)
66 1vg8_A RAS-related protein RAB 90.7 0.17 5.7E-06 32.3 2.7 29 31-59 6-34 (207)
67 1zd9_A ADP-ribosylation factor 90.7 0.16 5.6E-06 32.3 2.6 29 31-59 20-48 (188)
68 2fu5_C RAS-related protein RAB 90.7 0.11 3.7E-06 32.5 1.8 28 31-58 6-33 (183)
69 3q72_A GTP-binding protein RAD 90.6 0.085 2.9E-06 32.3 1.1 26 33-58 2-27 (166)
70 3t5g_A GTP-binding protein RHE 90.6 0.18 6E-06 31.5 2.7 28 32-59 5-32 (181)
71 3c5c_A RAS-like protein 12; GD 90.6 0.12 4.2E-06 33.0 2.0 29 31-59 19-47 (187)
72 3cph_A RAS-related protein SEC 90.5 0.16 5.3E-06 32.6 2.4 28 32-59 19-46 (213)
73 2o52_A RAS-related protein RAB 90.5 0.11 3.7E-06 33.6 1.7 29 31-59 23-51 (200)
74 1svi_A GTP-binding protein YSX 90.5 0.084 2.9E-06 33.4 1.1 26 32-57 22-47 (195)
75 3ihw_A Centg3; RAS, centaurin, 90.4 0.13 4.4E-06 33.0 1.9 30 31-60 18-47 (184)
76 2atv_A RERG, RAS-like estrogen 90.3 0.17 5.8E-06 32.3 2.5 30 31-60 26-55 (196)
77 2f7s_A C25KG, RAS-related prot 90.3 0.11 3.8E-06 33.7 1.6 28 31-58 23-50 (217)
78 2lkc_A Translation initiation 90.3 0.14 4.7E-06 31.7 2.0 28 33-60 8-35 (178)
79 2h57_A ADP-ribosylation factor 90.3 0.099 3.4E-06 33.2 1.3 26 32-57 20-45 (190)
80 2bcg_Y Protein YP2, GTP-bindin 90.3 0.17 6E-06 32.4 2.5 29 31-59 6-34 (206)
81 3bwd_D RAC-like GTP-binding pr 90.2 0.094 3.2E-06 32.6 1.1 28 31-58 6-33 (182)
82 2ew1_A RAS-related protein RAB 90.2 0.13 4.4E-06 33.8 1.8 29 31-59 24-52 (201)
83 2fv8_A H6, RHO-related GTP-bin 90.1 0.13 4.4E-06 33.4 1.8 30 30-59 22-51 (207)
84 3lxw_A GTPase IMAP family memb 90.1 0.12 4.2E-06 35.3 1.7 29 31-59 19-47 (247)
85 2q3h_A RAS homolog gene family 90.0 0.12 4.2E-06 33.0 1.6 30 30-59 17-46 (201)
86 2il1_A RAB12; G-protein, GDP, 89.9 0.12 4E-06 33.1 1.5 29 31-59 24-52 (192)
87 3pqc_A Probable GTP-binding pr 89.8 0.11 3.9E-06 32.5 1.3 27 32-58 22-48 (195)
88 2atx_A Small GTP binding prote 89.8 0.15 5.1E-06 32.3 1.8 28 32-59 17-44 (194)
89 4djt_A GTP-binding nuclear pro 89.7 0.11 3.6E-06 33.8 1.1 29 31-59 9-37 (218)
90 3lxx_A GTPase IMAP family memb 89.7 0.13 4.4E-06 34.4 1.6 29 31-59 27-55 (239)
91 3gj0_A GTP-binding nuclear pro 89.7 0.17 5.8E-06 33.0 2.1 29 31-59 13-41 (221)
92 2ged_A SR-beta, signal recogni 89.6 0.12 4.2E-06 32.6 1.4 28 31-58 46-73 (193)
93 2j1l_A RHO-related GTP-binding 89.6 0.14 4.9E-06 33.5 1.7 28 32-59 33-60 (214)
94 3l0i_B RAS-related protein RAB 89.6 0.12 4E-06 33.3 1.2 27 31-57 31-57 (199)
95 1m7b_A RND3/RHOE small GTP-bin 89.6 0.23 7.8E-06 31.4 2.6 29 31-59 5-33 (184)
96 2qu8_A Putative nucleolar GTP- 89.3 0.13 4.3E-06 34.1 1.3 27 33-59 29-55 (228)
97 3cbq_A GTP-binding protein REM 89.3 0.16 5.5E-06 32.9 1.8 24 31-54 21-44 (195)
98 1zj6_A ADP-ribosylation factor 89.3 0.15 5E-06 32.3 1.5 28 31-58 14-41 (187)
99 2yc2_C IFT27, small RAB-relate 89.1 0.13 4.5E-06 32.6 1.2 26 31-56 18-43 (208)
100 2gco_A H9, RHO-related GTP-bin 89.0 0.19 6.3E-06 32.4 1.9 29 31-59 23-51 (201)
101 1moz_A ARL1, ADP-ribosylation 88.9 0.15 5.1E-06 31.8 1.3 27 32-58 17-43 (183)
102 3cnl_A YLQF, putative uncharac 88.8 0.12 4.2E-06 36.1 1.0 25 34-58 100-124 (262)
103 4gzl_A RAS-related C3 botulinu 88.7 0.24 8.1E-06 32.1 2.3 30 31-60 28-57 (204)
104 3cpj_B GTP-binding protein YPT 88.6 0.2 6.8E-06 32.9 1.9 29 31-59 11-39 (223)
105 2hup_A RAS-related protein RAB 88.4 0.19 6.5E-06 32.5 1.7 28 31-58 27-54 (201)
106 4bas_A ADP-ribosylation factor 88.4 0.15 5.3E-06 32.1 1.2 30 31-60 15-44 (199)
107 2wjg_A FEOB, ferrous iron tran 88.1 0.25 8.4E-06 31.0 2.0 25 33-57 7-31 (188)
108 3q3j_B RHO-related GTP-binding 88.0 0.21 7.3E-06 32.8 1.7 30 31-60 25-54 (214)
109 2j0v_A RAC-like GTP-binding pr 88.0 0.23 7.9E-06 32.0 1.8 28 32-59 8-35 (212)
110 2zej_A Dardarin, leucine-rich 87.9 0.18 6.2E-06 32.0 1.2 22 34-55 3-24 (184)
111 1gwn_A RHO-related GTP-binding 87.9 0.23 8E-06 32.5 1.8 29 31-59 26-54 (205)
112 2hf9_A Probable hydrogenase ni 87.6 0.53 1.8E-05 30.6 3.5 28 31-58 36-63 (226)
113 2fh5_B SR-beta, signal recogni 87.6 0.19 6.6E-06 32.4 1.3 29 31-59 5-33 (214)
114 1puj_A YLQF, conserved hypothe 87.5 0.19 6.7E-06 35.5 1.3 27 32-58 119-145 (282)
115 2b6h_A ADP-ribosylation factor 87.4 0.23 8E-06 31.9 1.6 27 32-58 28-54 (192)
116 2cjw_A GTP-binding protein GEM 87.4 0.27 9.2E-06 31.7 1.9 25 32-56 5-29 (192)
117 1nrj_B SR-beta, signal recogni 87.3 0.21 7.1E-06 32.3 1.3 28 31-58 10-37 (218)
118 2f9l_A RAB11B, member RAS onco 87.1 0.32 1.1E-05 31.2 2.1 27 32-58 4-30 (199)
119 2x77_A ADP-ribosylation factor 86.9 0.23 8E-06 31.3 1.3 27 32-58 21-47 (189)
120 2wji_A Ferrous iron transport 86.7 0.32 1.1E-05 30.3 1.9 25 33-57 3-27 (165)
121 3th5_A RAS-related C3 botulinu 86.6 0.13 4.5E-06 33.1 0.0 29 31-59 28-56 (204)
122 1m2o_B GTP-binding protein SAR 86.6 0.21 7.2E-06 32.0 1.0 27 33-59 23-49 (190)
123 1oix_A RAS-related protein RAB 86.6 0.34 1.2E-05 31.1 2.0 28 31-58 27-54 (191)
124 4dkx_A RAS-related protein RAB 86.5 0.27 9.3E-06 33.2 1.6 27 33-59 13-39 (216)
125 3t1o_A Gliding protein MGLA; G 85.7 0.43 1.5E-05 29.7 2.1 24 31-54 12-35 (198)
126 1fzq_A ADP-ribosylation factor 85.6 0.34 1.1E-05 30.7 1.6 26 32-57 15-40 (181)
127 2xtp_A GTPase IMAP family memb 84.2 0.41 1.4E-05 32.2 1.6 27 31-57 20-46 (260)
128 2gj8_A MNME, tRNA modification 84.1 0.43 1.5E-05 30.1 1.6 24 34-57 5-28 (172)
129 4dhe_A Probable GTP-binding pr 84.1 0.18 6.2E-06 32.7 -0.3 26 32-57 28-53 (223)
130 2g3y_A GTP-binding protein GEM 83.8 0.5 1.7E-05 31.7 1.9 25 31-55 35-59 (211)
131 3llu_A RAS-related GTP-binding 83.3 0.42 1.4E-05 30.6 1.3 25 31-55 18-42 (196)
132 3a1s_A Iron(II) transport prot 83.2 0.52 1.8E-05 32.5 1.8 26 33-58 5-30 (258)
133 1pui_A ENGB, probable GTP-bind 83.0 0.45 1.5E-05 30.5 1.3 27 31-57 24-50 (210)
134 2wkq_A NPH1-1, RAS-related C3 82.6 0.52 1.8E-05 32.2 1.6 29 31-59 153-181 (332)
135 1f6b_A SAR1; gtpases, N-termin 82.3 0.52 1.8E-05 30.4 1.5 26 33-58 25-50 (198)
136 2wsm_A Hydrogenase expression/ 82.2 0.85 2.9E-05 29.5 2.5 27 31-57 28-54 (221)
137 3k53_A Ferrous iron transport 81.8 0.59 2E-05 32.0 1.6 26 33-58 3-28 (271)
138 3ec1_A YQEH GTPase; atnos1, at 81.3 0.57 2E-05 34.2 1.5 23 34-56 163-185 (369)
139 3i8s_A Ferrous iron transport 79.8 0.76 2.6E-05 31.8 1.7 25 33-57 3-27 (274)
140 2aka_B Dynamin-1; fusion prote 78.7 0.6 2.1E-05 31.7 0.9 27 33-59 26-52 (299)
141 3c5h_A Glucocorticoid receptor 78.6 0.82 2.8E-05 31.1 1.5 24 32-55 18-50 (255)
142 1jbk_A CLPB protein; beta barr 78.2 1 3.6E-05 27.5 1.8 27 31-57 41-67 (195)
143 3b1v_A Ferrous iron uptake tra 77.9 0.91 3.1E-05 31.7 1.6 25 33-57 3-27 (272)
144 3h2y_A GTPase family protein; 77.6 0.85 2.9E-05 33.3 1.4 24 34-57 161-184 (368)
145 3r7w_A Gtpase1, GTP-binding pr 77.0 0.93 3.2E-05 31.9 1.5 24 33-56 3-26 (307)
146 3t34_A Dynamin-related protein 76.3 1.3 4.3E-05 31.7 2.0 28 35-62 36-63 (360)
147 1wf3_A GTP-binding protein; GT 76.3 1 3.6E-05 31.8 1.6 26 35-60 9-34 (301)
148 3o47_A ADP-ribosylation factor 76.1 0.72 2.5E-05 32.9 0.7 27 32-58 164-190 (329)
149 1kgd_A CASK, peripheral plasma 75.7 1.1 3.8E-05 28.7 1.5 21 36-56 8-28 (180)
150 2qor_A Guanylate kinase; phosp 75.2 1.2 4.2E-05 28.9 1.6 21 36-56 15-35 (204)
151 2e87_A Hypothetical protein PH 75.1 1 3.5E-05 32.3 1.2 26 32-57 166-191 (357)
152 3iby_A Ferrous iron transport 75.1 1.1 3.6E-05 30.9 1.3 23 35-57 3-25 (256)
153 1jwy_B Dynamin A GTPase domain 74.6 0.9 3.1E-05 31.2 0.8 25 34-58 25-49 (315)
154 3dpu_A RAB family protein; roc 74.3 1.4 4.7E-05 33.3 1.8 27 32-58 40-66 (535)
155 2p65_A Hypothetical protein PF 73.3 1.5 5.2E-05 26.9 1.6 27 31-57 41-67 (187)
156 2j69_A Bacterial dynamin-like 71.2 1.7 5.9E-05 34.4 1.8 30 31-60 67-96 (695)
157 1mky_A Probable GTP-binding pr 71.1 1.7 5.9E-05 32.0 1.7 25 33-57 180-204 (439)
158 2yv5_A YJEQ protein; hydrolase 70.6 1.7 5.6E-05 30.7 1.4 20 35-54 167-186 (302)
159 1jal_A YCHF protein; nucleotid 70.4 1.6 5.3E-05 32.4 1.3 25 33-57 2-26 (363)
160 3iev_A GTP-binding protein ERA 70.0 1.8 6E-05 30.5 1.5 25 36-60 13-37 (308)
161 1t9h_A YLOQ, probable GTPase E 68.7 0.96 3.3E-05 32.7 -0.1 21 35-55 175-195 (307)
162 4gp7_A Metallophosphoesterase; 68.7 1.7 5.7E-05 27.8 1.0 17 36-52 12-28 (171)
163 1np6_A Molybdopterin-guanine d 68.3 2.2 7.5E-05 28.1 1.6 22 35-56 8-29 (174)
164 1ly1_A Polynucleotide kinase; 68.3 2.7 9.1E-05 26.0 1.9 21 35-55 4-24 (181)
165 1wxq_A GTP-binding protein; st 68.3 1.6 5.6E-05 32.2 1.1 24 34-57 1-24 (397)
166 1ex7_A Guanylate kinase; subst 67.7 2.3 7.8E-05 28.5 1.6 21 36-56 4-24 (186)
167 2hjg_A GTP-binding protein ENG 67.7 2.2 7.5E-05 31.4 1.6 27 32-58 174-200 (436)
168 3bos_A Putative DNA replicatio 66.8 2.7 9.3E-05 26.9 1.8 26 32-57 51-76 (242)
169 1njg_A DNA polymerase III subu 66.5 2.8 9.7E-05 26.3 1.8 23 35-57 47-69 (250)
170 1lvg_A Guanylate kinase, GMP k 66.5 2.4 8.2E-05 27.7 1.5 21 36-56 7-27 (198)
171 2chg_A Replication factor C sm 65.7 4.5 0.00015 25.1 2.6 22 35-56 40-61 (226)
172 2qpt_A EH domain-containing pr 65.6 1.8 6.2E-05 33.3 0.9 27 33-59 65-91 (550)
173 4dcu_A GTP-binding protein ENG 65.3 2.4 8.4E-05 31.3 1.5 27 33-59 23-49 (456)
174 3lw7_A Adenylate kinase relate 65.2 2.7 9.3E-05 25.4 1.5 19 35-53 3-21 (179)
175 2x2e_A Dynamin-1; nitration, h 65.1 2.4 8.2E-05 30.3 1.4 27 33-59 31-57 (353)
176 1mky_A Probable GTP-binding pr 65.1 2.4 8.1E-05 31.3 1.4 24 35-58 3-26 (439)
177 3lvq_E ARF-GAP with SH3 domain 65.0 2.9 0.0001 30.9 1.9 27 32-58 321-347 (497)
178 3geh_A MNME, tRNA modification 64.9 3.7 0.00013 31.0 2.4 25 34-58 225-249 (462)
179 2dby_A GTP-binding protein; GD 64.9 2.4 8.1E-05 31.3 1.3 24 34-57 2-25 (368)
180 2rcn_A Probable GTPase ENGC; Y 64.8 2.5 8.5E-05 31.3 1.4 22 35-56 217-238 (358)
181 1u0l_A Probable GTPase ENGC; p 64.3 2.6 9E-05 29.5 1.4 21 35-55 171-191 (301)
182 2hjg_A GTP-binding protein ENG 64.2 2.4 8.2E-05 31.2 1.2 25 34-58 4-28 (436)
183 1s96_A Guanylate kinase, GMP k 64.0 2.8 9.5E-05 28.3 1.5 21 36-56 19-39 (219)
184 2w58_A DNAI, primosome compone 64.0 3.3 0.00011 26.4 1.8 24 34-57 55-78 (202)
185 1ega_A Protein (GTP-binding pr 63.7 2.4 8.3E-05 29.7 1.1 25 35-59 10-34 (301)
186 1ye8_A Protein THEP1, hypothet 63.2 3 0.0001 27.2 1.4 22 35-56 2-23 (178)
187 1zcb_A G alpha I/13; GTP-bindi 63.1 3.5 0.00012 30.2 2.0 36 19-54 19-54 (362)
188 3kta_A Chromosome segregation 62.8 2.8 9.7E-05 26.3 1.3 20 36-55 29-48 (182)
189 3n70_A Transport activator; si 62.7 3.1 0.00011 25.7 1.4 25 31-55 22-46 (145)
190 3qq5_A Small GTP-binding prote 62.4 2.7 9.1E-05 31.6 1.2 28 31-58 32-59 (423)
191 1nks_A Adenylate kinase; therm 62.4 3.6 0.00012 25.6 1.7 21 35-55 3-23 (194)
192 1gvn_B Zeta; postsegregational 62.1 3.6 0.00012 28.7 1.8 23 34-56 34-56 (287)
193 2rhm_A Putative kinase; P-loop 61.6 3.4 0.00012 25.9 1.5 21 35-55 7-27 (193)
194 1rj9_A FTSY, signal recognitio 61.3 2.9 0.0001 29.8 1.2 21 35-55 104-124 (304)
195 3kb2_A SPBC2 prophage-derived 60.8 4.4 0.00015 24.8 1.8 21 35-55 3-23 (173)
196 1xjc_A MOBB protein homolog; s 60.3 3.8 0.00013 27.1 1.6 22 35-56 6-27 (169)
197 1qhx_A CPT, protein (chloramph 60.1 4 0.00014 25.3 1.6 21 35-55 5-25 (178)
198 1gtv_A TMK, thymidylate kinase 60.0 2.4 8E-05 27.2 0.5 21 36-56 3-23 (214)
199 1zp6_A Hypothetical protein AT 59.9 3.6 0.00012 25.9 1.3 20 36-55 12-31 (191)
200 1f5n_A Interferon-induced guan 59.6 6.6 0.00023 30.9 3.1 27 31-57 36-62 (592)
201 3t61_A Gluconokinase; PSI-biol 59.6 4 0.00014 26.1 1.6 22 35-56 20-41 (202)
202 3sjy_A Translation initiation 59.1 3.3 0.00011 30.1 1.2 24 32-55 7-30 (403)
203 4eun_A Thermoresistant glucoki 59.0 3.6 0.00012 26.6 1.2 21 35-55 31-51 (200)
204 3p32_A Probable GTPase RV1496/ 59.0 6.6 0.00023 28.1 2.8 26 31-56 77-102 (355)
205 3ney_A 55 kDa erythrocyte memb 58.8 4.1 0.00014 27.5 1.6 21 36-56 22-42 (197)
206 2www_A Methylmalonic aciduria 58.4 4.2 0.00015 29.2 1.7 24 33-56 74-97 (349)
207 1z6g_A Guanylate kinase; struc 58.3 3.7 0.00012 27.3 1.2 20 36-55 26-45 (218)
208 3tau_A Guanylate kinase, GMP k 58.3 4.1 0.00014 26.6 1.5 21 36-56 11-31 (208)
209 3co5_A Putative two-component 58.1 3.4 0.00012 25.5 1.0 24 31-54 25-48 (143)
210 3iij_A Coilin-interacting nucl 58.1 4.3 0.00015 25.4 1.5 21 35-55 13-33 (180)
211 2r62_A Cell division protease 58.0 3.6 0.00012 27.4 1.2 22 35-56 46-67 (268)
212 3gee_A MNME, tRNA modification 57.8 3.8 0.00013 31.1 1.4 25 33-57 233-257 (476)
213 2qby_A CDC6 homolog 1, cell di 57.5 4.1 0.00014 27.9 1.4 22 35-56 47-68 (386)
214 1fnn_A CDC6P, cell division co 57.5 4.8 0.00017 27.8 1.8 23 35-57 46-68 (389)
215 2qz4_A Paraplegin; AAA+, SPG7, 57.5 5 0.00017 26.3 1.8 23 34-56 40-62 (262)
216 2c78_A Elongation factor TU-A; 57.4 6 0.00021 28.7 2.4 30 27-56 5-34 (405)
217 1kht_A Adenylate kinase; phosp 57.4 5.2 0.00018 24.8 1.8 21 35-55 5-25 (192)
218 3tr0_A Guanylate kinase, GMP k 57.3 4.4 0.00015 25.6 1.5 21 36-56 10-30 (205)
219 3c8u_A Fructokinase; YP_612366 57.0 4.4 0.00015 26.3 1.5 22 34-55 23-44 (208)
220 3ec2_A DNA replication protein 56.9 5.1 0.00017 25.2 1.7 24 35-58 40-63 (180)
221 2j41_A Guanylate kinase; GMP, 56.7 4.6 0.00016 25.5 1.5 21 36-56 9-29 (207)
222 2ohf_A Protein OLA1, GTP-bindi 56.6 3.5 0.00012 30.9 1.0 28 31-58 20-47 (396)
223 3e70_C DPA, signal recognition 56.6 3.9 0.00013 29.5 1.2 22 34-55 130-151 (328)
224 2qen_A Walker-type ATPase; unk 56.5 5.2 0.00018 27.1 1.8 22 35-56 33-54 (350)
225 4dcu_A GTP-binding protein ENG 56.4 4.6 0.00016 29.8 1.6 26 32-57 194-219 (456)
226 2fna_A Conserved hypothetical 56.4 5 0.00017 27.2 1.7 22 35-56 32-53 (357)
227 2bjv_A PSP operon transcriptio 56.3 4.4 0.00015 27.1 1.4 25 31-55 27-51 (265)
228 1znw_A Guanylate kinase, GMP k 56.2 4.2 0.00014 26.4 1.2 20 36-55 23-42 (207)
229 3b9q_A Chloroplast SRP recepto 55.9 4.1 0.00014 28.9 1.2 22 35-56 102-123 (302)
230 2v1u_A Cell division control p 55.8 4.5 0.00016 27.8 1.4 24 33-56 44-67 (387)
231 1knq_A Gluconate kinase; ALFA/ 55.7 4.8 0.00017 25.0 1.4 21 35-55 10-30 (175)
232 2qtf_A Protein HFLX, GTP-bindi 55.7 4.5 0.00016 29.4 1.5 23 36-58 182-204 (364)
233 2f1r_A Molybdopterin-guanine d 55.7 2.7 9.1E-05 27.5 0.2 21 35-55 4-24 (171)
234 4a74_A DNA repair and recombin 55.4 4.2 0.00014 26.0 1.1 22 36-57 28-49 (231)
235 1hqc_A RUVB; extended AAA-ATPa 55.2 4.8 0.00016 27.4 1.4 25 32-56 37-61 (324)
236 2jaq_A Deoxyguanosine kinase; 55.1 5.9 0.0002 24.8 1.8 21 35-55 2-22 (205)
237 1lv7_A FTSH; alpha/beta domain 54.9 5.8 0.0002 26.4 1.8 23 34-56 46-68 (257)
238 3h4m_A Proteasome-activating n 54.7 6 0.0002 26.5 1.8 24 33-56 51-74 (285)
239 3a00_A Guanylate kinase, GMP k 54.5 5.4 0.00018 25.4 1.5 21 36-56 4-24 (186)
240 1kag_A SKI, shikimate kinase I 54.5 4.6 0.00016 24.9 1.2 20 35-54 6-25 (173)
241 1tev_A UMP-CMP kinase; ploop, 54.3 7 0.00024 24.2 2.0 22 34-55 4-25 (196)
242 2i3b_A HCR-ntpase, human cance 54.2 4.8 0.00016 26.6 1.3 21 36-56 4-24 (189)
243 3pfi_A Holliday junction ATP-d 54.0 5.2 0.00018 27.6 1.5 23 33-55 55-77 (338)
244 3p26_A Elongation factor 1 alp 53.7 6.4 0.00022 29.4 2.0 27 30-56 30-56 (483)
245 1d2e_A Elongation factor TU (E 53.7 7.1 0.00024 28.3 2.2 25 33-57 3-27 (397)
246 3uie_A Adenylyl-sulfate kinase 53.4 5.5 0.00019 25.7 1.4 21 34-54 26-46 (200)
247 1jny_A EF-1-alpha, elongation 53.2 7 0.00024 28.8 2.1 25 32-56 5-29 (435)
248 2w0m_A SSO2452; RECA, SSPF, un 53.1 5.1 0.00017 25.5 1.2 22 36-57 26-47 (235)
249 1ofh_A ATP-dependent HSL prote 52.9 5.7 0.00019 26.6 1.5 24 33-56 50-73 (310)
250 1zun_B Sulfate adenylate trans 52.9 7.4 0.00025 28.6 2.2 27 31-57 22-48 (434)
251 2bdt_A BH3686; alpha-beta prot 52.7 5.2 0.00018 25.2 1.2 20 36-55 5-24 (189)
252 2kjq_A DNAA-related protein; s 52.2 8.1 0.00028 24.3 2.1 23 35-57 38-60 (149)
253 2yvu_A Probable adenylyl-sulfa 52.2 5.9 0.0002 25.0 1.4 22 34-55 14-35 (186)
254 2og2_A Putative signal recogni 51.9 5.1 0.00018 29.4 1.2 22 35-56 159-180 (359)
255 3b9p_A CG5977-PA, isoform A; A 51.8 7 0.00024 26.4 1.8 23 34-56 55-77 (297)
256 2cvh_A DNA repair and recombin 51.8 5.5 0.00019 25.3 1.2 20 36-55 23-42 (220)
257 3vaa_A Shikimate kinase, SK; s 51.6 6.1 0.00021 25.4 1.4 20 35-54 27-46 (199)
258 3syl_A Protein CBBX; photosynt 51.0 6.9 0.00024 26.4 1.7 22 33-54 67-88 (309)
259 2yhs_A FTSY, cell division pro 50.9 5.3 0.00018 31.1 1.2 21 35-55 295-315 (503)
260 1tq4_A IIGP1, interferon-induc 50.8 6.6 0.00023 29.4 1.7 21 35-55 71-91 (413)
261 2ehv_A Hypothetical protein PH 50.8 5.8 0.0002 25.7 1.2 20 36-55 33-52 (251)
262 2qby_B CDC6 homolog 3, cell di 50.7 6.9 0.00024 27.1 1.7 23 34-56 46-68 (384)
263 3tif_A Uncharacterized ABC tra 50.5 5.8 0.0002 26.9 1.2 19 36-54 34-52 (235)
264 2bbw_A Adenylate kinase 4, AK4 50.2 6.5 0.00022 26.1 1.4 20 35-54 29-48 (246)
265 2v3c_C SRP54, signal recogniti 50.1 6.4 0.00022 29.5 1.5 23 34-56 100-122 (432)
266 2p5t_B PEZT; postsegregational 50.0 8.5 0.00029 25.9 2.0 23 33-55 32-54 (253)
267 1ixz_A ATP-dependent metallopr 49.6 7.2 0.00025 25.8 1.6 21 35-55 51-71 (254)
268 3cm0_A Adenylate kinase; ATP-b 49.5 7.8 0.00027 24.1 1.7 21 35-55 6-26 (186)
269 3fb4_A Adenylate kinase; psych 49.4 8.2 0.00028 24.8 1.8 21 35-55 2-22 (216)
270 3dl0_A Adenylate kinase; phosp 49.3 8.2 0.00028 24.8 1.8 21 35-55 2-22 (216)
271 1kk1_A EIF2gamma; initiation o 49.2 8 0.00027 28.1 1.9 24 31-54 8-31 (410)
272 2gza_A Type IV secretion syste 49.2 5.7 0.0002 28.7 1.1 21 35-55 177-197 (361)
273 3asz_A Uridine kinase; cytidin 49.1 6.1 0.00021 25.3 1.1 21 35-55 8-28 (211)
274 1d2n_A N-ethylmaleimide-sensit 49.1 8.1 0.00028 25.9 1.8 26 31-56 62-87 (272)
275 3pxg_A Negative regulator of g 49.0 8.3 0.00028 28.7 2.0 27 31-57 199-225 (468)
276 2vli_A Antibiotic resistance p 48.5 8.6 0.00029 23.8 1.8 20 35-54 7-26 (183)
277 2pcj_A ABC transporter, lipopr 48.5 6.2 0.00021 26.5 1.1 19 36-54 33-51 (224)
278 3pvs_A Replication-associated 48.4 7.5 0.00026 29.1 1.7 49 8-56 23-73 (447)
279 2plr_A DTMP kinase, probable t 48.1 10 0.00034 23.9 2.0 21 35-55 6-26 (213)
280 1ni3_A YCHF GTPase, YCHF GTP-b 48.1 6.3 0.00022 29.3 1.2 26 33-58 20-45 (392)
281 1xzp_A Probable tRNA modificat 48.1 6.3 0.00021 30.0 1.2 24 34-57 244-267 (482)
282 3zvl_A Bifunctional polynucleo 47.9 7 0.00024 28.7 1.4 21 35-55 260-280 (416)
283 2cbz_A Multidrug resistance-as 47.7 6.8 0.00023 26.6 1.2 19 36-54 34-52 (237)
284 1bif_A 6-phosphofructo-2-kinas 47.7 7.9 0.00027 28.7 1.7 24 32-55 38-61 (469)
285 3trf_A Shikimate kinase, SK; a 47.5 7.8 0.00027 24.2 1.4 20 35-54 7-26 (185)
286 1l8q_A Chromosomal replication 47.4 7.5 0.00026 26.8 1.4 24 34-57 38-61 (324)
287 3lnc_A Guanylate kinase, GMP k 47.3 7.5 0.00026 25.5 1.4 19 36-54 30-48 (231)
288 3a4m_A L-seryl-tRNA(SEC) kinas 47.1 8.2 0.00028 26.1 1.6 22 35-56 6-27 (260)
289 1nij_A Hypothetical protein YJ 47.0 7.5 0.00026 27.4 1.4 21 36-56 7-27 (318)
290 1g8p_A Magnesium-chelatase 38 46.9 8.4 0.00029 26.4 1.6 22 34-55 46-67 (350)
291 1ojl_A Transcriptional regulat 46.4 7.7 0.00026 27.1 1.4 25 31-55 23-47 (304)
292 1w5s_A Origin recognition comp 46.1 8.4 0.00029 26.9 1.6 22 35-56 52-75 (412)
293 2eyu_A Twitching motility prot 45.8 8.2 0.00028 26.7 1.4 20 36-55 28-47 (261)
294 1rz3_A Hypothetical protein rb 45.8 7.4 0.00025 25.2 1.1 22 34-55 23-44 (201)
295 1f60_A Elongation factor EEF1A 45.7 11 0.00036 28.1 2.1 25 32-56 6-30 (458)
296 4fcw_A Chaperone protein CLPB; 45.7 8.5 0.00029 25.9 1.5 23 34-56 48-70 (311)
297 3r7w_B Gtpase2, GTP-binding pr 45.6 7.8 0.00027 28.5 1.3 20 36-55 2-21 (331)
298 2d2e_A SUFC protein; ABC-ATPas 45.6 7.6 0.00026 26.5 1.2 20 36-55 32-51 (250)
299 4ag6_A VIRB4 ATPase, type IV s 45.5 11 0.00038 26.9 2.2 47 13-59 12-61 (392)
300 3uk6_A RUVB-like 2; hexameric 45.5 9.3 0.00032 26.5 1.7 23 35-57 72-94 (368)
301 2px0_A Flagellar biosynthesis 45.3 8 0.00027 27.3 1.3 23 35-57 107-129 (296)
302 2pt5_A Shikimate kinase, SK; a 45.3 11 0.00036 23.1 1.8 21 35-55 2-22 (168)
303 3b85_A Phosphate starvation-in 45.2 9.2 0.00031 25.6 1.6 21 36-56 25-45 (208)
304 2j37_W Signal recognition part 45.0 8.2 0.00028 29.7 1.4 22 34-55 102-123 (504)
305 1s0u_A EIF-2-gamma, translatio 45.0 9.8 0.00034 27.6 1.8 24 31-54 6-29 (408)
306 1vma_A Cell division protein F 44.9 7.8 0.00027 27.6 1.2 21 35-55 106-126 (306)
307 2qt1_A Nicotinamide riboside k 44.8 9.6 0.00033 24.4 1.6 22 34-55 22-43 (207)
308 3izq_1 HBS1P, elongation facto 44.6 7.8 0.00027 30.2 1.3 25 31-55 165-189 (611)
309 1cip_A Protein (guanine nucleo 44.5 11 0.00039 27.3 2.1 36 19-54 18-53 (353)
310 1cke_A CK, MSSA, protein (cyti 44.5 9.2 0.00031 24.6 1.4 21 35-55 7-27 (227)
311 1nn5_A Similar to deoxythymidy 44.4 9.5 0.00033 24.2 1.5 21 35-55 11-31 (215)
312 2ff7_A Alpha-hemolysin translo 44.3 8.2 0.00028 26.4 1.2 20 36-55 38-57 (247)
313 2qm8_A GTPase/ATPase; G protei 44.2 8.8 0.0003 27.4 1.4 22 34-55 56-77 (337)
314 3j2k_7 ERF3, eukaryotic polype 44.2 9.7 0.00033 28.2 1.7 24 31-54 15-38 (439)
315 1iy2_A ATP-dependent metallopr 44.1 9.8 0.00033 25.7 1.6 21 35-55 75-95 (278)
316 1ltq_A Polynucleotide kinase; 43.9 8.4 0.00029 26.1 1.2 21 35-55 4-24 (301)
317 1mv5_A LMRA, multidrug resista 43.8 8.5 0.00029 26.1 1.2 20 36-55 31-50 (243)
318 1g6h_A High-affinity branched- 43.7 8.4 0.00029 26.4 1.2 19 36-54 36-54 (257)
319 1jr3_A DNA polymerase III subu 43.5 8.4 0.00029 26.5 1.2 22 35-56 40-61 (373)
320 2z0h_A DTMP kinase, thymidylat 43.5 11 0.00036 23.6 1.6 21 36-56 3-23 (197)
321 1n0w_A DNA repair protein RAD5 43.5 8.8 0.0003 24.7 1.2 22 36-57 27-48 (243)
322 2if2_A Dephospho-COA kinase; a 43.4 9.4 0.00032 24.2 1.4 21 35-55 3-23 (204)
323 1ukz_A Uridylate kinase; trans 43.3 13 0.00044 23.5 2.0 22 34-55 16-37 (203)
324 3mca_A HBS1, elongation factor 43.2 13 0.00045 28.8 2.4 26 31-56 175-200 (592)
325 2pt7_A CAG-ALFA; ATPase, prote 43.0 8 0.00027 27.6 1.1 21 35-55 173-193 (330)
326 1b0u_A Histidine permease; ABC 42.9 8.8 0.0003 26.4 1.2 19 36-54 35-53 (262)
327 1odf_A YGR205W, hypothetical 3 42.9 12 0.00041 26.3 1.9 24 31-54 29-52 (290)
328 2pze_A Cystic fibrosis transme 42.9 9 0.00031 25.8 1.2 19 36-54 37-55 (229)
329 3cf0_A Transitional endoplasmi 42.8 12 0.0004 25.9 1.8 21 35-55 51-71 (301)
330 1cr0_A DNA primase/helicase; R 42.6 8.7 0.0003 26.2 1.1 23 36-58 38-60 (296)
331 1lnz_A SPO0B-associated GTP-bi 42.5 7.8 0.00027 28.0 0.9 25 33-57 158-182 (342)
332 4g1u_C Hemin import ATP-bindin 42.3 9.1 0.00031 26.5 1.2 20 36-55 40-59 (266)
333 2pbr_A DTMP kinase, thymidylat 42.3 12 0.00043 23.1 1.8 20 36-55 3-22 (195)
334 2wwf_A Thymidilate kinase, put 42.2 11 0.00037 23.9 1.5 21 35-55 12-32 (212)
335 1ji0_A ABC transporter; ATP bi 42.1 9.3 0.00032 25.9 1.2 20 36-55 35-54 (240)
336 2ghi_A Transport protein; mult 42.0 9.3 0.00032 26.3 1.2 20 36-55 49-68 (260)
337 1e9r_A Conjugal transfer prote 42.0 11 0.00037 27.2 1.6 30 32-61 52-81 (437)
338 1yrb_A ATP(GTP)binding protein 41.9 12 0.0004 24.6 1.7 23 33-55 14-36 (262)
339 1jjv_A Dephospho-COA kinase; P 41.9 12 0.00041 23.9 1.7 22 34-55 3-24 (206)
340 2qi9_C Vitamin B12 import ATP- 41.9 9.4 0.00032 26.3 1.2 20 36-55 29-48 (249)
341 2ewv_A Twitching motility prot 41.7 10 0.00035 27.5 1.5 21 35-55 138-158 (372)
342 1m7g_A Adenylylsulfate kinase; 41.7 11 0.00037 24.4 1.4 21 35-55 27-47 (211)
343 1sgw_A Putative ABC transporte 41.7 9.6 0.00033 25.7 1.2 20 36-55 38-57 (214)
344 2onk_A Molybdate/tungstate ABC 41.6 9.6 0.00033 26.0 1.2 19 36-54 27-45 (240)
345 1via_A Shikimate kinase; struc 41.4 9.7 0.00033 23.7 1.2 20 35-54 6-25 (175)
346 1f2t_A RAD50 ABC-ATPase; DNA d 41.4 11 0.00036 23.7 1.4 20 36-55 26-45 (149)
347 2zu0_C Probable ATP-dependent 41.4 9.6 0.00033 26.3 1.2 20 36-55 49-68 (267)
348 3eie_A Vacuolar protein sortin 41.3 13 0.00043 25.9 1.8 23 34-56 52-74 (322)
349 2ixe_A Antigen peptide transpo 40.9 9.9 0.00034 26.4 1.2 20 36-55 48-67 (271)
350 2v54_A DTMP kinase, thymidylat 40.9 13 0.00044 23.4 1.7 22 35-56 6-27 (204)
351 2v9p_A Replication protein E1; 40.5 11 0.00038 27.0 1.5 20 36-55 129-148 (305)
352 1e6c_A Shikimate kinase; phosp 40.5 13 0.00043 22.8 1.6 21 35-55 4-24 (173)
353 3aez_A Pantothenate kinase; tr 40.4 14 0.00046 26.3 1.9 22 34-55 91-112 (312)
354 1y63_A LMAJ004144AAA protein; 40.4 14 0.00047 23.4 1.8 22 35-56 12-33 (184)
355 2c95_A Adenylate kinase 1; tra 40.2 13 0.00046 23.1 1.7 21 35-55 11-31 (196)
356 3kl4_A SRP54, signal recogniti 40.1 10 0.00035 28.6 1.3 21 34-54 98-118 (433)
357 2olj_A Amino acid ABC transpor 40.1 10 0.00035 26.3 1.2 20 36-55 53-72 (263)
358 2h5e_A Peptide chain release f 40.1 13 0.00043 28.5 1.8 24 32-55 12-35 (529)
359 2nq2_C Hypothetical ABC transp 40.0 11 0.00037 25.9 1.3 19 36-54 34-52 (253)
360 2yz2_A Putative ABC transporte 40.0 10 0.00036 26.1 1.2 19 36-54 36-54 (266)
361 1lw7_A Transcriptional regulat 39.9 9.8 0.00034 27.1 1.1 22 34-55 171-192 (365)
362 2cdn_A Adenylate kinase; phosp 39.8 13 0.00044 23.6 1.6 24 32-55 19-42 (201)
363 2pez_A Bifunctional 3'-phospho 39.7 12 0.00042 23.3 1.4 20 36-55 8-27 (179)
364 1vpl_A ABC transporter, ATP-bi 39.6 11 0.00036 26.1 1.2 20 36-55 44-63 (256)
365 2bwj_A Adenylate kinase 5; pho 39.6 14 0.00048 23.1 1.7 21 35-55 14-34 (199)
366 3d8b_A Fidgetin-like protein 1 39.4 14 0.00047 26.3 1.8 23 33-55 117-139 (357)
367 1iqp_A RFCS; clamp loader, ext 39.4 23 0.00078 23.7 2.9 31 26-56 39-69 (327)
368 2dr3_A UPF0273 protein PH0284; 39.3 16 0.00055 23.5 2.0 22 36-57 26-47 (247)
369 3tr5_A RF-3, peptide chain rel 39.2 13 0.00045 28.5 1.8 23 32-54 12-34 (528)
370 1vht_A Dephospho-COA kinase; s 39.0 14 0.00047 23.8 1.7 22 34-55 5-26 (218)
371 2ius_A DNA translocase FTSK; n 39.0 14 0.00049 28.5 2.0 27 35-61 169-195 (512)
372 3vfd_A Spastin; ATPase, microt 38.9 14 0.00048 26.4 1.8 23 34-56 149-171 (389)
373 1zd8_A GTP:AMP phosphotransfer 38.8 14 0.00049 24.0 1.7 21 35-55 9-29 (227)
374 1sxj_E Activator 1 40 kDa subu 38.7 11 0.00037 26.0 1.1 22 35-56 38-59 (354)
375 1htw_A HI0065; nucleotide-bind 38.6 12 0.0004 24.0 1.2 22 36-57 36-57 (158)
376 1qf9_A UMP/CMP kinase, protein 38.6 17 0.00057 22.4 1.9 22 34-55 7-28 (194)
377 1r6b_X CLPA protein; AAA+, N-t 38.6 14 0.00047 28.9 1.8 26 31-56 205-230 (758)
378 3qks_A DNA double-strand break 38.4 12 0.00042 24.5 1.4 22 36-57 26-47 (203)
379 2ihy_A ABC transporter, ATP-bi 38.3 11 0.00039 26.3 1.2 20 36-55 50-69 (279)
380 3pxi_A Negative regulator of g 38.3 13 0.00044 29.2 1.6 26 31-56 199-224 (758)
381 2p67_A LAO/AO transport system 38.2 13 0.00045 26.3 1.6 23 33-55 56-78 (341)
382 2xb4_A Adenylate kinase; ATP-b 38.1 15 0.00052 24.0 1.8 21 35-55 2-22 (223)
383 3gfo_A Cobalt import ATP-bindi 37.8 12 0.0004 26.2 1.2 20 36-55 37-56 (275)
384 2pjz_A Hypothetical protein ST 37.8 12 0.00041 26.0 1.2 20 36-55 33-52 (263)
385 2vp4_A Deoxynucleoside kinase; 37.7 11 0.00037 24.9 1.0 21 36-56 23-43 (230)
386 2zts_A Putative uncharacterize 37.5 9.8 0.00033 24.5 0.7 21 36-56 33-53 (251)
387 1r5b_A Eukaryotic peptide chai 37.4 13 0.00046 27.6 1.6 25 31-55 41-65 (467)
388 1e4v_A Adenylate kinase; trans 37.3 16 0.00053 23.6 1.7 21 35-55 2-22 (214)
389 1sxj_B Activator 1 37 kDa subu 37.3 23 0.00077 23.7 2.6 30 27-56 36-65 (323)
390 1e69_A Chromosome segregation 37.2 15 0.0005 25.7 1.7 19 36-54 27-45 (322)
391 3tqc_A Pantothenate kinase; bi 37.1 15 0.0005 26.5 1.7 23 32-54 91-113 (321)
392 1zak_A Adenylate kinase; ATP:A 37.0 14 0.00047 23.9 1.4 21 35-55 7-27 (222)
393 1sxj_D Activator 1 41 kDa subu 36.7 18 0.00062 24.6 2.0 46 10-56 36-81 (353)
394 1nlf_A Regulatory protein REPA 36.7 12 0.00042 25.3 1.1 20 36-55 33-52 (279)
395 1zuh_A Shikimate kinase; alpha 36.3 18 0.00061 22.2 1.8 20 35-54 9-28 (168)
396 1wb1_A Translation elongation 35.9 16 0.00055 27.4 1.8 25 33-57 19-43 (482)
397 2ocp_A DGK, deoxyguanosine kin 35.9 15 0.00052 24.2 1.5 22 35-56 4-25 (241)
398 2r44_A Uncharacterized protein 35.8 9.5 0.00032 26.3 0.5 21 35-55 48-68 (331)
399 1um8_A ATP-dependent CLP prote 35.8 15 0.00051 25.9 1.5 23 33-55 72-94 (376)
400 3tlx_A Adenylate kinase 2; str 35.8 19 0.00066 24.0 2.0 24 32-55 28-51 (243)
401 2iyv_A Shikimate kinase, SK; t 35.7 17 0.00057 22.6 1.6 20 35-54 4-23 (184)
402 1aky_A Adenylate kinase; ATP:A 35.6 18 0.00062 23.3 1.8 21 35-55 6-26 (220)
403 1uf9_A TT1252 protein; P-loop, 35.3 17 0.00057 22.7 1.6 22 34-55 9-30 (203)
404 2ze6_A Isopentenyl transferase 35.2 16 0.00056 24.7 1.6 21 35-55 3-23 (253)
405 3nh6_A ATP-binding cassette SU 35.0 11 0.00038 26.9 0.7 19 36-54 83-101 (306)
406 1xwi_A SKD1 protein; VPS4B, AA 34.9 18 0.00062 25.3 1.8 23 35-57 47-69 (322)
407 3izy_P Translation initiation 34.8 14 0.0005 28.5 1.4 27 34-60 5-31 (537)
408 2bbs_A Cystic fibrosis transme 34.8 13 0.00046 26.1 1.1 19 36-54 67-85 (290)
409 3hws_A ATP-dependent CLP prote 34.4 14 0.00047 26.0 1.2 23 33-55 51-73 (363)
410 2qgz_A Helicase loader, putati 34.1 20 0.00069 25.1 2.0 26 33-58 152-177 (308)
411 2xex_A Elongation factor G; GT 33.9 17 0.00057 28.7 1.7 25 32-56 9-33 (693)
412 1in4_A RUVB, holliday junction 33.9 17 0.00057 25.5 1.5 22 35-56 53-74 (334)
413 3t15_A Ribulose bisphosphate c 33.7 19 0.00063 24.9 1.7 23 34-56 37-59 (293)
414 2x8a_A Nuclear valosin-contain 33.5 15 0.00052 25.2 1.2 20 36-55 47-66 (274)
415 3jvv_A Twitching mobility prot 33.5 16 0.00056 26.5 1.4 31 24-55 115-145 (356)
416 3dm5_A SRP54, signal recogniti 33.3 15 0.00051 27.9 1.2 23 33-55 100-122 (443)
417 1sxj_C Activator 1 40 kDa subu 33.2 29 0.00099 24.0 2.7 31 26-56 39-69 (340)
418 2oap_1 GSPE-2, type II secreti 33.1 14 0.00048 28.2 1.1 21 35-55 262-282 (511)
419 1sq5_A Pantothenate kinase; P- 32.9 17 0.00058 25.3 1.4 22 34-55 81-102 (308)
420 1uj2_A Uridine-cytidine kinase 32.8 23 0.00079 23.5 2.0 25 31-55 20-44 (252)
421 1zu4_A FTSY; GTPase, signal re 32.7 16 0.00054 26.1 1.2 21 35-55 107-127 (320)
422 4e22_A Cytidylate kinase; P-lo 32.3 18 0.00062 24.3 1.4 20 35-54 29-48 (252)
423 2iut_A DNA translocase FTSK; n 32.1 22 0.00077 28.0 2.1 28 34-61 215-242 (574)
424 1pzn_A RAD51, DNA repair and r 32.1 16 0.00054 26.2 1.1 21 36-56 134-154 (349)
425 1p5z_B DCK, deoxycytidine kina 32.0 21 0.00073 23.8 1.7 22 35-56 26-47 (263)
426 2axn_A 6-phosphofructo-2-kinas 31.8 20 0.00067 27.4 1.7 21 34-54 36-56 (520)
427 3szr_A Interferon-induced GTP- 31.7 14 0.00049 28.6 0.9 21 36-56 48-68 (608)
428 1dar_A EF-G, elongation factor 31.7 20 0.00069 28.2 1.8 24 32-55 11-34 (691)
429 2xxa_A Signal recognition part 31.7 18 0.00062 27.0 1.4 23 34-56 101-123 (433)
430 2jeo_A Uridine-cytidine kinase 31.6 24 0.00081 23.4 1.9 21 35-55 27-47 (245)
431 2npi_A Protein CLP1; CLP1-PCF1 31.5 18 0.00061 27.3 1.4 21 35-55 140-160 (460)
432 2z4s_A Chromosomal replication 31.4 19 0.00066 26.5 1.6 23 35-57 132-154 (440)
433 3llm_A ATP-dependent RNA helic 31.3 25 0.00085 23.1 2.0 20 35-54 78-97 (235)
434 1j8m_F SRP54, signal recogniti 31.0 23 0.00077 24.9 1.8 22 35-56 100-121 (297)
435 2qp9_X Vacuolar protein sortin 30.9 21 0.00071 25.4 1.6 22 35-56 86-107 (355)
436 1ii2_A Phosphoenolpyruvate car 30.7 16 0.00056 28.5 1.1 17 35-51 215-231 (524)
437 1azs_C GS-alpha; complex (lyas 30.5 23 0.0008 26.4 1.9 37 18-54 25-61 (402)
438 2f6r_A COA synthase, bifunctio 30.2 22 0.00075 24.5 1.6 22 33-54 75-96 (281)
439 2chq_A Replication factor C sm 30.1 23 0.00079 23.6 1.6 22 35-56 40-61 (319)
440 3nwj_A ATSK2; P loop, shikimat 29.9 18 0.00063 24.9 1.2 20 35-54 50-69 (250)
441 1ak2_A Adenylate kinase isoenz 29.8 25 0.00087 23.0 1.8 22 34-55 17-38 (233)
442 1udx_A The GTP-binding protein 29.6 17 0.00059 27.1 1.0 21 36-56 160-180 (416)
443 3be4_A Adenylate kinase; malar 29.4 25 0.00086 22.8 1.7 21 35-55 7-27 (217)
444 2xtz_A Guanine nucleotide-bind 29.3 27 0.00092 25.4 2.0 22 33-54 9-30 (354)
445 3u61_B DNA polymerase accessor 29.0 18 0.00062 24.7 1.0 47 9-56 24-71 (324)
446 1qvr_A CLPB protein; coiled co 28.8 19 0.00063 28.8 1.1 27 31-57 189-215 (854)
447 2yl4_A ATP-binding cassette SU 28.8 25 0.00084 26.9 1.8 20 36-55 373-392 (595)
448 1g7s_A Translation initiation 28.8 26 0.00088 27.3 1.9 26 34-59 6-31 (594)
449 1ny5_A Transcriptional regulat 28.5 33 0.0011 24.8 2.3 24 31-54 158-181 (387)
450 3cb4_D GTP-binding protein LEP 28.4 29 0.001 27.1 2.2 23 33-55 4-26 (599)
451 3nbx_X ATPase RAVA; AAA+ ATPas 28.4 23 0.00077 27.1 1.5 22 34-55 42-63 (500)
452 1ytm_A Phosphoenolpyruvate car 28.3 19 0.00066 28.2 1.1 17 35-51 237-253 (532)
453 3lda_A DNA repair protein RAD5 28.0 25 0.00086 26.0 1.7 23 36-58 181-203 (400)
454 1zo1_I IF2, translation initia 27.9 37 0.0013 26.0 2.7 27 34-60 5-31 (501)
455 4a9a_A Ribosome-interacting GT 27.6 17 0.0006 26.8 0.7 25 33-57 72-96 (376)
456 3tqf_A HPR(Ser) kinase; transf 27.5 19 0.00065 24.6 0.9 19 35-53 18-36 (181)
457 1n0u_A EF-2, elongation factor 27.5 37 0.0013 27.4 2.7 26 31-56 17-42 (842)
458 1ko7_A HPR kinase/phosphatase; 27.4 26 0.00088 25.4 1.6 22 34-55 145-166 (314)
459 1p9r_A General secretion pathw 27.3 22 0.00075 26.5 1.2 20 36-55 170-189 (418)
460 1w1w_A Structural maintenance 27.2 23 0.0008 25.7 1.4 20 36-55 29-48 (430)
461 4aby_A DNA repair protein RECN 27.2 11 0.00039 26.8 -0.4 19 36-54 63-81 (415)
462 3qf7_A RAD50; ABC-ATPase, ATPa 27.0 24 0.00082 25.4 1.4 18 37-54 27-44 (365)
463 2elf_A Protein translation elo 26.9 22 0.00074 25.8 1.1 20 35-54 23-42 (370)
464 2dy1_A Elongation factor G; tr 26.6 24 0.00081 27.7 1.3 24 33-56 9-32 (665)
465 3hu3_A Transitional endoplasmi 26.5 29 0.00099 26.2 1.8 23 33-55 238-260 (489)
466 1sxj_A Activator 1 95 kDa subu 26.3 29 0.001 25.9 1.8 23 34-56 78-100 (516)
467 3b60_A Lipid A export ATP-bind 26.3 22 0.00077 27.0 1.1 20 36-55 372-391 (582)
468 3tui_C Methionine import ATP-b 26.2 24 0.00081 26.1 1.2 19 36-54 57-75 (366)
469 3qf4_B Uncharacterized ABC tra 25.9 27 0.00093 26.8 1.6 19 36-54 384-402 (598)
470 2ywe_A GTP-binding protein LEP 25.8 34 0.0012 26.8 2.1 24 33-56 6-29 (600)
471 2olr_A Phosphoenolpyruvate car 25.8 23 0.00077 28.0 1.1 18 34-51 242-259 (540)
472 3b5x_A Lipid A export ATP-bind 25.7 24 0.00082 26.9 1.2 20 36-55 372-391 (582)
473 2o5v_A DNA replication and rep 25.5 26 0.0009 25.5 1.4 20 36-55 29-48 (359)
474 3ake_A Cytidylate kinase; CMP 25.3 30 0.001 21.6 1.4 20 35-54 4-23 (208)
475 2zan_A Vacuolar protein sortin 25.0 33 0.0011 25.2 1.8 23 34-56 168-190 (444)
476 3f9v_A Minichromosome maintena 24.8 18 0.00061 28.0 0.3 22 33-54 327-348 (595)
477 3bh0_A DNAB-like replicative h 24.7 27 0.00091 24.4 1.2 22 36-57 71-92 (315)
478 1z47_A CYSA, putative ABC-tran 24.7 26 0.0009 25.6 1.2 19 36-54 44-62 (355)
479 3k1j_A LON protease, ATP-depen 24.7 25 0.00086 26.9 1.2 21 35-55 62-82 (604)
480 3r20_A Cytidylate kinase; stru 24.6 27 0.00093 23.9 1.2 21 34-54 10-30 (233)
481 4eaq_A DTMP kinase, thymidylat 24.5 32 0.0011 22.9 1.6 21 36-56 29-49 (229)
482 3m6a_A ATP-dependent protease 24.4 29 0.001 26.3 1.5 21 35-55 110-130 (543)
483 2it1_A 362AA long hypothetical 24.3 27 0.00092 25.6 1.2 19 36-54 32-50 (362)
484 4a82_A Cystic fibrosis transme 24.2 24 0.00083 26.9 1.0 19 36-54 370-388 (578)
485 1tf7_A KAIC; homohexamer, hexa 24.2 27 0.00094 26.1 1.3 23 36-58 284-306 (525)
486 3auy_A DNA double-strand break 24.1 28 0.00096 24.8 1.3 23 36-58 28-50 (371)
487 1g29_1 MALK, maltose transport 23.9 28 0.00095 25.5 1.2 19 36-54 32-50 (372)
488 1ls1_A Signal recognition part 23.7 31 0.0011 24.0 1.4 22 35-56 100-121 (295)
489 1z6t_A APAF-1, apoptotic prote 23.4 30 0.001 25.6 1.4 20 35-54 149-168 (591)
490 2yyz_A Sugar ABC transporter, 23.4 29 0.00099 25.4 1.2 19 36-54 32-50 (359)
491 2ga8_A Hypothetical 39.9 kDa p 23.3 53 0.0018 24.3 2.7 26 29-54 20-45 (359)
492 3qf4_A ABC transporter, ATP-bi 23.0 30 0.001 26.5 1.3 19 36-54 372-390 (587)
493 2rdo_7 EF-G, elongation factor 22.9 31 0.0011 27.3 1.4 24 32-55 9-32 (704)
494 1knx_A Probable HPR(Ser) kinas 22.8 26 0.00088 25.4 0.9 15 35-49 149-163 (312)
495 2grj_A Dephospho-COA kinase; T 22.7 45 0.0016 21.8 2.0 24 32-55 11-34 (192)
496 3te6_A Regulatory protein SIR3 22.6 29 0.001 24.9 1.1 28 30-57 42-69 (318)
497 4f4c_A Multidrug resistance pr 22.5 36 0.0012 28.9 1.8 25 31-55 1097-1127(1321)
498 1c9k_A COBU, adenosylcobinamid 22.5 31 0.0011 22.9 1.1 21 36-56 2-22 (180)
499 2ffh_A Protein (FFH); SRP54, s 22.4 33 0.0011 25.7 1.4 22 35-56 100-121 (425)
500 3gd7_A Fusion complex of cysti 22.4 30 0.001 25.6 1.1 19 36-54 50-68 (390)
No 1
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.06 E-value=2.9e-12 Score=91.72 Aligned_cols=45 Identities=31% Similarity=0.506 Sum_probs=42.8
Q ss_pred eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhh
Q psy5599 14 IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 14 ~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
||+++++|+.||||+++ .++|++||+++++.|++.|||+||+++|
T Consensus 225 wg~~~v~n~~h~df~~lr~~l~~~~~~~l~~~t~~~~ye~~r~~~l 270 (270)
T 3sop_A 225 WGIIEVENLNHCEFALLRDFVIRTHLQDLKEVTHNIHYETYRAKRL 270 (270)
T ss_dssp C-CEESSCTTTCSHHHHHHHHHTTTHHHHHHHHHHTHHHHHHHHHC
T ss_pred ceEEEeCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999 8999999999999999999999999875
No 2
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.02 E-value=7.6e-12 Score=90.30 Aligned_cols=52 Identities=29% Similarity=0.440 Sum_probs=45.3
Q ss_pred eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhcCCCCCCC
Q psy5599 14 IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGTDGK 66 (79)
Q Consensus 14 ~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~~~~~~~~ 66 (79)
||+++++|+.||||+++ .++| +||+++++.|++.|||+||+++|..++..+.
T Consensus 241 wg~~~v~n~~h~df~~lr~~l~-~~~~~l~~~t~~~~ye~~r~~~l~~~~~~~~ 293 (301)
T 2qnr_A 241 WGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGRKVE 293 (301)
T ss_dssp TEEEETTCTTTCSHHHHHHHHH-HTHHHHHHHHHHTHHHHHHHHHHHC------
T ss_pred CceEeeCCCccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999999999999 8999 9999999999999999999999999886543
No 3
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.78 E-value=5.9e-11 Score=90.92 Aligned_cols=50 Identities=28% Similarity=0.372 Sum_probs=42.4
Q ss_pred eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhcCCCC
Q psy5599 14 IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGT 63 (79)
Q Consensus 14 ~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~~~~~ 63 (79)
||+++|+|+.||||+++ .++|.+||+++++.|++.|||+||+++|..++.
T Consensus 258 WG~~even~~h~DF~~Lr~~l~~t~~~dL~~~T~~~~YE~yR~~~L~~~~~ 308 (427)
T 2qag_B 258 WGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGF 308 (427)
T ss_dssp CCCCC-----CCSSHHHHHHHHHTSTTHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred CceEEeCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999 899999999999999999999999999987653
No 4
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.69 E-value=6.1e-10 Score=82.17 Aligned_cols=49 Identities=31% Similarity=0.478 Sum_probs=42.3
Q ss_pred eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhcCCCC
Q psy5599 14 IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGT 63 (79)
Q Consensus 14 ~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~~~~~ 63 (79)
||+++++|+.||+|+++ .++| +||+++++.|++.|||+||+++|...+.
T Consensus 260 wg~~~ven~~h~df~~Lr~~l~-~~~~dl~~~t~~~~ye~yr~~~l~~~~~ 309 (361)
T 2qag_A 260 WGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGR 309 (361)
T ss_dssp SCCEESSCC-CCTHHHHHHHHH-HCCGGGTHHHHTTTHHHHHTTTC-----
T ss_pred CceEecCCCccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999 8999 9999999999999999999999988663
No 5
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.58 E-value=1.6e-09 Score=76.07 Aligned_cols=46 Identities=43% Similarity=0.548 Sum_probs=44.7
Q ss_pred eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 14 IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 14 ~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
||+++++|..||+|.++ .++|++||+++...|++.|||+||+++|.
T Consensus 227 wg~~~ve~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~yr~~~l~ 273 (274)
T 3t5d_A 227 WGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLA 273 (274)
T ss_dssp SCEEESSCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999 89999999999999999999999999885
No 6
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.52 E-value=1.4e-09 Score=82.58 Aligned_cols=49 Identities=41% Similarity=0.510 Sum_probs=43.9
Q ss_pred ceeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhcCC
Q psy5599 13 YIGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLAGL 61 (79)
Q Consensus 13 ~~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~~~ 61 (79)
.||+++|+|+.||+|+++ .++|.+|+.++++.|++.|||+||+++|..+
T Consensus 249 ~wg~i~Ven~~h~df~~Lr~~Li~~~~~dl~~~T~~~~Ye~yR~~~l~~~ 298 (418)
T 2qag_C 249 PWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAV 298 (418)
T ss_dssp SSCEECC--CCSSTTTHHHHHHHTTSHHHHHHHHHHHTHHHHHHHHCC--
T ss_pred cceEEEecchhhCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 499999999999999999 8999999999999999999999999999987
No 7
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.15 E-value=4.1e-07 Score=66.98 Aligned_cols=54 Identities=50% Similarity=0.730 Sum_probs=37.8
Q ss_pred CCCCCCccCCceeeeeCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhh
Q psy5599 3 ERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 3 ~~~~~~~~~~~~G~~~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
..+...+..+++|+.+++.+.+++.++.++.|+++++|.+|.|||++++.++..
T Consensus 7 ~~~~~~~~~~~v~~~~l~~~~~~k~~~~~~~~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 7 TQFINPETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp --------------CCHHHHHHTHHHHHCCEECEEECCCTTSCHHHHHHHHTTC
T ss_pred cccCcCCCCceEEeccchHHhCCeeecCCCCEEEEEEcCCCCCHHHHHHHHhCC
Confidence 345566778999999999999999999999999999999999999999997654
No 8
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.31 E-value=7.6e-05 Score=51.89 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=41.5
Q ss_pred ccCCceeeeeCCChHHHH-------HHhhC-ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 9 EVDGYIGFANLPNQVFRK-------AVKKG-FEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 9 ~~~~~~G~~~lpnq~~~~-------~~K~g-~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+|+|+.++|++.+.. ..+.+ -.++++++|.+|.|||+++|.|+...+.
T Consensus 7 ~~~~~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~~~ 65 (270)
T 1h65_A 7 TVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVV 65 (270)
T ss_dssp -CEECGGGGGSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCS
T ss_pred hhhhhcchhhccHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 446789999999997766 44444 4899999999999999999999977653
No 9
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.14 E-value=8.8e-05 Score=56.19 Aligned_cols=52 Identities=50% Similarity=0.848 Sum_probs=37.0
Q ss_pred CCccCCceeeeeCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhhhh
Q psy5599 7 PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 7 ~~~~~~~~G~~~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
+..+.+++++.+++.+.....+..|+.|+++++|.+|.||||+++.|.....
T Consensus 5 ~~~~~~~l~~~~l~~~y~~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 5 QKNLEGYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp ----------CCCCCCTTTTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred cccCcCcEEEEecceeECCEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3456678999999998877777789999999999999999999999987654
No 10
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.03 E-value=0.00016 Score=50.48 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=24.6
Q ss_pred HhhCceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 28 VKKGFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 28 ~K~g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
+++|+.|+++++|.+|+|||+++|+++.....
T Consensus 3 ~~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~ 34 (274)
T 3t5d_A 3 LGSGFEFTLMVVGESGLGKSTLINSLFLTDLY 34 (274)
T ss_dssp ----CEEEEEEEECTTSSHHHHHHHHSSSCC-
T ss_pred CcCccEEEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 56799999999999999999999998765543
No 11
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.61 E-value=0.00062 Score=48.72 Aligned_cols=39 Identities=51% Similarity=0.695 Sum_probs=21.9
Q ss_pred eCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhh
Q psy5599 18 NLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 18 ~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
+|+.+...+.+..++.|+++++|.+|.||||+++.++..
T Consensus 3 ~l~~~~~~~~~l~~~~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 3 NLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ---------------CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CCcceECCEEEEcCCCEEEEEECCCCCCHHHHHHHHhCC
Confidence 567777777788899999999999999999999997764
No 12
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.34 E-value=0.0016 Score=49.74 Aligned_cols=53 Identities=25% Similarity=0.479 Sum_probs=38.3
Q ss_pred CCCccCCceeeeeCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhhhh
Q psy5599 6 IPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 6 ~~~~~~~~~G~~~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
....+.+.+++...+.+..+..++.|..|+++++|.+|.||||+++.+....+
T Consensus 15 ~~l~~~~~~~y~~~~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 15 RTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp --CCCCCCC-CC--CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred ceEEEeeEEEECCeecCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc
Confidence 45566677788776655566666679999999999999999999999987643
No 13
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.28 E-value=0.0018 Score=45.81 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=24.8
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
|.|+++++|.+|.||||+++.++......
T Consensus 1 f~f~v~lvG~nGaGKSTLln~L~g~~~~~ 29 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSR 29 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHHHHHHHHC--
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 78999999999999999999999765443
No 14
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.39 E-value=0.0052 Score=39.82 Aligned_cols=46 Identities=7% Similarity=-0.018 Sum_probs=23.8
Q ss_pred ceeeeeCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhhhh
Q psy5599 13 YIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 13 ~~G~~~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
+-|++.++++.+.+.....-.+++.++|..|.||+++++.|.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~ 53 (199)
T 2p5s_A 8 HHHSSGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEF 53 (199)
T ss_dssp --------------------CEEEEEESSTTSSHHHHHHHHHHCCC
T ss_pred ccccCCcccccccCCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCC
Confidence 4578888888888888888889999999999999999999987654
No 15
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.35 E-value=0.055 Score=33.07 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=25.0
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
..+++.++|..|.|||++++.|.......
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~ 32 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK 32 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence 46899999999999999999998765543
No 16
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.17 E-value=0.059 Score=33.12 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=25.0
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|.+|.|||++++.|......
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~ 32 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFN 32 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 35689999999999999999999876654
No 17
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.07 E-value=0.064 Score=32.74 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=24.1
Q ss_pred eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
.+++.++|..|.|||++++.|.......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~ 30 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE 30 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4789999999999999999998766543
No 18
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.85 E-value=0.072 Score=32.34 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.8
Q ss_pred eEeeeeecccCccccchhhhhhhhhhc
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.+++.++|..|.|||++++.|......
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~ 30 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV 30 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC
Confidence 478999999999999999999876643
No 19
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.81 E-value=0.073 Score=32.58 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=23.9
Q ss_pred eEeeeeecccCccccchhhhhhhhhhc
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.+++.++|..|.|||++++.|......
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~ 32 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFD 32 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 589999999999999999999877643
No 20
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.68 E-value=0.079 Score=32.33 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=24.5
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
-.+++.++|..|.|||++++.|.......
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~ 33 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHE 33 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 35889999999999999999998765443
No 21
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.67 E-value=0.077 Score=32.38 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=23.4
Q ss_pred eEeeeeecccCccccchhhhhhhhhhc
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.+++.++|..|.|||++++.|......
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~ 29 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV 29 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 478999999999999999999876543
No 22
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.67 E-value=0.08 Score=31.97 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=23.9
Q ss_pred eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
.+++.++|..|.|||++++.|.......
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~ 30 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD 30 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc
Confidence 4789999999999999999998765543
No 23
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.65 E-value=0.08 Score=32.10 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=24.0
Q ss_pred eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
.+++.++|..|.|||++++.|.......
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~ 30 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE 30 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc
Confidence 4789999999999999999998766543
No 24
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.64 E-value=0.051 Score=33.31 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=23.7
Q ss_pred eEeeeeecccCccccchhhhhhhhhhc
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.+++.++|..|.|||++++.|......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~ 29 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN 29 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC
Confidence 588999999999999999999876543
No 25
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.58 E-value=0.084 Score=32.96 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=24.3
Q ss_pred eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
.|++.++|..|.|||++++.|.......
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~ 31 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVD 31 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 5889999999999999999998766543
No 26
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.53 E-value=0.057 Score=33.50 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=24.2
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
-.+++.++|..|.|||++++.|......
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~ 33 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD 33 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 4689999999999999999999876543
No 27
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.49 E-value=0.081 Score=32.33 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=23.5
Q ss_pred eEeeeeecccCccccchhhhhhhhhhc
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.+++.++|..|.|||++++.|......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~ 29 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR 29 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 578999999999999999999876543
No 28
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.45 E-value=0.082 Score=32.61 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=25.7
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
...+++.++|..|.|||++++.|.......
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~ 42 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA 42 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 457999999999999999999998776543
No 29
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.30 E-value=0.088 Score=32.47 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=24.5
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
-.+++.++|..|.|||++++.|.......
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~ 41 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN 41 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 35899999999999999999998765543
No 30
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.28 E-value=0.063 Score=33.50 Aligned_cols=29 Identities=7% Similarity=0.117 Sum_probs=25.0
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|.|||++++.|......
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~ 37 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFN 37 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45789999999999999999999876543
No 31
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.24 E-value=0.064 Score=33.18 Aligned_cols=28 Identities=18% Similarity=0.035 Sum_probs=24.1
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
-.+++.++|..|.|||++++.|......
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~ 35 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV 35 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc
Confidence 3589999999999999999999876543
No 32
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.24 E-value=0.054 Score=33.18 Aligned_cols=26 Identities=8% Similarity=0.234 Sum_probs=22.7
Q ss_pred EeeeeecccCccccchhhhhhhhhhc
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
+++.++|.+|+|||++++.|......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~ 26 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV 26 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC
Confidence 47899999999999999999876654
No 33
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.20 E-value=0.095 Score=33.24 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=25.0
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
-.+++.++|..|.|||++++.|.......
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 47 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD 47 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 46899999999999999999998766543
No 34
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.12 E-value=0.1 Score=32.68 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=25.3
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
.-.+++.++|..|.|||++++.|.......
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~ 45 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVD 45 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 457999999999999999999999765443
No 35
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.03 E-value=0.1 Score=32.41 Aligned_cols=30 Identities=7% Similarity=0.025 Sum_probs=25.5
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
...+++.++|..|.|||++++.|.......
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 39 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE 39 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence 456899999999999999999998766543
No 36
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.01 E-value=0.071 Score=32.99 Aligned_cols=29 Identities=7% Similarity=0.077 Sum_probs=24.5
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.-.+++.++|..|.|||++++.|......
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~ 34 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYS 34 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 45789999999999999999999876543
No 37
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.01 E-value=0.1 Score=32.43 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=24.5
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
-.+++.++|..|.|||++++.|....+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~ 44 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV 44 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC
Confidence 3689999999999999999999976643
No 38
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.95 E-value=0.071 Score=32.97 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=24.0
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.-.+++.++|..|.|||++++.|......
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~ 35 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC--
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46789999999999999999999866544
No 39
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.94 E-value=0.075 Score=33.59 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=23.8
Q ss_pred eEeeeeecccCccccchhhhhhhhhhc
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.+++.++|..|.|||++++.|......
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~ 47 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV 47 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc
Confidence 589999999999999999999876544
No 40
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.93 E-value=0.069 Score=33.20 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=25.1
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|.|||++++.|......
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~ 36 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFL 36 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC
Confidence 45689999999999999999999876653
No 41
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.91 E-value=0.094 Score=32.49 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=23.4
Q ss_pred ceEeeeeecccCccccchhhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
-.+++.++|..|.|||++++.|.....
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~ 31 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF 31 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC
Confidence 358899999999999999999986654
No 42
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.90 E-value=0.079 Score=33.79 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=25.6
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...|++.++|..|.|||++++.|......
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~ 49 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFT 49 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCC
Confidence 57899999999999999999999976644
No 43
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.86 E-value=0.12 Score=32.08 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=23.9
Q ss_pred eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
.+++.++|.+|.|||++++.|....+..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~ 32 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPG 32 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 5789999999999999999998766543
No 44
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.86 E-value=0.11 Score=32.54 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=25.4
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
...+++.++|..|.|||++++.|.......
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 37 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD 37 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 456899999999999999999998766543
No 45
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.80 E-value=0.11 Score=32.93 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=25.9
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
...+++.++|..|.|||++++.|.......
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~ 52 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSH 52 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC
Confidence 567999999999999999999998766543
No 46
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.73 E-value=0.11 Score=33.02 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=24.4
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
-.+++.++|..|.|||++++.|....+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~ 40 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFV 40 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 4689999999999999999999876643
No 47
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.71 E-value=0.11 Score=32.48 Aligned_cols=29 Identities=3% Similarity=0.000 Sum_probs=25.0
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|.|||++++.|......
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~ 33 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFH 33 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 34689999999999999999999987654
No 48
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.66 E-value=0.071 Score=33.42 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=22.7
Q ss_pred EeeeeecccCccccchhhhhhhhhhc
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
+++.++|..|.|||++++.|......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~ 27 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR 27 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc
Confidence 67899999999999999999876543
No 49
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.63 E-value=0.074 Score=32.81 Aligned_cols=28 Identities=7% Similarity=0.033 Sum_probs=22.5
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
-.+++.++|..|+|||++++.|......
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~ 30 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQER 30 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC---
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCc
Confidence 3588999999999999999999876543
No 50
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.52 E-value=0.13 Score=32.44 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=25.7
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
...+++.++|..|.|||++++.|.......
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 43 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE 43 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence 467899999999999999999998766543
No 51
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.50 E-value=0.076 Score=32.63 Aligned_cols=28 Identities=7% Similarity=0.211 Sum_probs=24.0
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
-.+++.++|..|.|||++++.|......
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~ 33 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV 33 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3578999999999999999999876543
No 52
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.43 E-value=0.12 Score=33.01 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=25.1
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.-.+++.++|..|.|||++++.|......
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~ 49 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD 49 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 45799999999999999999999876643
No 53
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.37 E-value=0.091 Score=33.49 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=25.2
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|.|||++++.|......
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~ 47 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQ 47 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 45789999999999999999999876654
No 54
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.33 E-value=0.068 Score=33.67 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=23.4
Q ss_pred CceEeeeeecccCccccchhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.-.+++.++|..|.|||++++.|....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999999998765
No 55
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.31 E-value=0.093 Score=33.30 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=25.3
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|.|||++++.|......
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~ 48 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFT 48 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 45799999999999999999999877654
No 56
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.31 E-value=0.094 Score=32.22 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred eEeeeeecccCccccchhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~ 55 (79)
.|++.++|.+|.|||++++.|..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999999864
No 57
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.27 E-value=0.13 Score=32.95 Aligned_cols=29 Identities=7% Similarity=0.251 Sum_probs=25.0
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|.|||++++.|......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~ 34 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFT 34 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35689999999999999999999876654
No 58
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.12 E-value=0.091 Score=32.76 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=24.7
Q ss_pred eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
.+.+.++|..|+|||++++.|.......
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~ 34 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV 34 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 5889999999999999999999876654
No 59
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.04 E-value=0.14 Score=32.40 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=24.6
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.-.+++.++|..|.|||++++.|......
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~ 34 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR 34 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCC
Confidence 34689999999999999999999876554
No 60
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.02 E-value=0.15 Score=32.43 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=25.7
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|+|||++++.|....+.
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~ 49 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIP 49 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 56799999999999999999999987653
No 61
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.94 E-value=0.091 Score=31.95 Aligned_cols=24 Identities=8% Similarity=0.259 Sum_probs=21.7
Q ss_pred EeeeeecccCccccchhhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.++.++|..|.|||++++.|....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998765
No 62
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.90 E-value=0.16 Score=32.69 Aligned_cols=31 Identities=6% Similarity=-0.031 Sum_probs=25.6
Q ss_pred hCceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 30 KGFEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 30 ~g~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
..-.+++.++|..|.|||++++.|.......
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~ 51 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSE 51 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCS
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCC
Confidence 3457899999999999999999999876553
No 63
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.88 E-value=0.16 Score=31.91 Aligned_cols=27 Identities=7% Similarity=0.178 Sum_probs=23.9
Q ss_pred eEeeeeecccCccccchhhhhhhhhhc
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.+++.++|..|.||+++++.|......
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~ 41 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFD 41 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 589999999999999999999876644
No 64
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.80 E-value=0.091 Score=36.03 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=32.3
Q ss_pred eeeeCCChHHH-------HHHhh-CceEeeeeecccCccccchhhhhhhhhh
Q psy5599 15 GFANLPNQVFR-------KAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 15 G~~~lpnq~~~-------~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
|+.++++.... ..... .-.+++.++|..|.|||+++|.|.....
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 10 GFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQV 61 (262)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCC
T ss_pred HHhhccHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 77777764332 22222 3579999999999999999999997664
No 65
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.70 E-value=0.087 Score=33.29 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=23.4
Q ss_pred ceEeeeeecccCccccchhhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
-.+++.++|..|+|||++++.|.....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 46 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV 46 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 358899999999999999999987654
No 66
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.70 E-value=0.17 Score=32.29 Aligned_cols=29 Identities=7% Similarity=0.180 Sum_probs=24.7
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.-.+++.++|..|.|||++++.|......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~ 34 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFS 34 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 45789999999999999999999876644
No 67
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.70 E-value=0.16 Score=32.26 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=25.0
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.-.+++.++|..|.|||++++.|......
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~ 48 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN 48 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 34689999999999999999999876654
No 68
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.67 E-value=0.11 Score=32.51 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=12.4
Q ss_pred CceEeeeeecccCccccchhhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
...+++.++|..|+|||++++.|.....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~ 33 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF 33 (183)
T ss_dssp SEEEEEEEECCCCC--------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 3568999999999999999999886543
No 69
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.59 E-value=0.085 Score=32.34 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=21.1
Q ss_pred eEeeeeecccCccccchhhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
.|++.++|.+|.|||++++.|.....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccc
Confidence 46899999999999999999875443
No 70
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.59 E-value=0.18 Score=31.48 Aligned_cols=28 Identities=7% Similarity=0.064 Sum_probs=23.9
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
-.+++.++|..|.|||++++.|......
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~ 32 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV 32 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 3688999999999999999999865543
No 71
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.56 E-value=0.12 Score=33.00 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=24.8
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.-.+++.++|..|+|||++++.|......
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~ 47 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI 47 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC
Confidence 45789999999999999999999877643
No 72
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.53 E-value=0.16 Score=32.56 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=23.9
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
-.+++.++|..|+||+++++.|......
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~ 46 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN 46 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 4589999999999999999999876653
No 73
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.52 E-value=0.11 Score=33.60 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=23.1
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|.|||++++.|......
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~ 51 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK 51 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC----
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC
Confidence 56799999999999999999999866554
No 74
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.48 E-value=0.084 Score=33.40 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=22.7
Q ss_pred ceEeeeeecccCccccchhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
-.+++.++|..|.|||++++.|....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46889999999999999999998765
No 75
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.36 E-value=0.13 Score=32.98 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=25.8
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
.-.+++.++|.+|+|||++++.|.......
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~ 47 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQ 47 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 567999999999999999999998766543
No 76
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.30 E-value=0.17 Score=32.31 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=25.1
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
.-.+++.++|..|.|||++++.|.......
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~ 55 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIW 55 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCc
Confidence 456899999999999999999999876543
No 77
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.30 E-value=0.11 Score=33.66 Aligned_cols=28 Identities=11% Similarity=0.193 Sum_probs=24.4
Q ss_pred CceEeeeeecccCccccchhhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
...+++.++|..|.|||++++.|.....
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 5679999999999999999999986544
No 78
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.28 E-value=0.14 Score=31.72 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=23.8
Q ss_pred eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
.+++.++|..|.|||++++.|.......
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~ 35 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTE 35 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcccc
Confidence 5679999999999999999998765543
No 79
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.28 E-value=0.099 Score=33.19 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=23.0
Q ss_pred ceEeeeeecccCccccchhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
-.+++.++|..|.|||++++.|....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 35889999999999999999998766
No 80
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.26 E-value=0.17 Score=32.43 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=25.0
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|.|||++++.|......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~ 34 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYT 34 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45689999999999999999999876654
No 81
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.24 E-value=0.094 Score=32.62 Aligned_cols=28 Identities=7% Similarity=-0.007 Sum_probs=23.5
Q ss_pred CceEeeeeecccCccccchhhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
...+++.++|..|.|||++++.|.....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~ 33 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTF 33 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3458899999999999999999987654
No 82
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.21 E-value=0.13 Score=33.79 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=25.3
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|.+|+|||++++.|......
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~ 52 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFP 52 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCC
Confidence 56799999999999999999999876543
No 83
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.11 E-value=0.13 Score=33.37 Aligned_cols=30 Identities=13% Similarity=0.022 Sum_probs=25.5
Q ss_pred hCceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 30 KGFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 30 ~g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.-..+++.++|..|.|||++++.|......
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~ 51 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFP 51 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 345789999999999999999999876543
No 84
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.07 E-value=0.12 Score=35.32 Aligned_cols=29 Identities=7% Similarity=-0.034 Sum_probs=24.9
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.-.+++.++|.+|.|||+++|.+......
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~ 47 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRF 47 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 45799999999999999999999876654
No 85
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.01 E-value=0.12 Score=32.95 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=21.8
Q ss_pred hCceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 30 KGFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 30 ~g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
..-.+++.++|..|+|||++++.|......
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~ 46 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYP 46 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 356789999999999999999999876543
No 86
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.92 E-value=0.12 Score=33.14 Aligned_cols=29 Identities=14% Similarity=0.360 Sum_probs=23.0
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|.|||++++.|......
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~ 52 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFC 52 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC----
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46789999999999999999999876543
No 87
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.80 E-value=0.11 Score=32.48 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.6
Q ss_pred ceEeeeeecccCccccchhhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
-.+++.++|..|.|||++++.|.....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 48 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKI 48 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCcc
Confidence 457899999999999999999987763
No 88
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.76 E-value=0.15 Score=32.35 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=24.7
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
..+++.++|..|+||+++++.|....+.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~ 44 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP 44 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999999999999999999977543
No 89
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=89.74 E-value=0.11 Score=33.78 Aligned_cols=29 Identities=3% Similarity=0.092 Sum_probs=24.4
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...|++.++|..|.|||++++.|......
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~ 37 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFE 37 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57899999999999999999999865543
No 90
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.73 E-value=0.13 Score=34.41 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=24.8
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.-.+++.++|.+|.|||+++|.+......
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 46799999999999999999999876653
No 91
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=89.66 E-value=0.17 Score=33.01 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=24.7
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|.|||++++.|......
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~ 41 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFE 41 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 46789999999999999999997766543
No 92
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.64 E-value=0.12 Score=32.64 Aligned_cols=28 Identities=0% Similarity=0.125 Sum_probs=24.0
Q ss_pred CceEeeeeecccCccccchhhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
.-.+++.++|..|.|||++++.|.....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3457899999999999999999987653
No 93
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.64 E-value=0.14 Score=33.48 Aligned_cols=28 Identities=7% Similarity=-0.028 Sum_probs=22.3
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
-.+++.++|..|+|||++++.|......
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~ 60 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP 60 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 4689999999999999999999876543
No 94
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=89.59 E-value=0.12 Score=33.29 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=23.4
Q ss_pred CceEeeeeecccCccccchhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
...+++.++|.+|.|||++++.|....
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence 457999999999999999999987543
No 95
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.57 E-value=0.23 Score=31.39 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=24.4
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|+|||++++.|......
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~ 33 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP 33 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35689999999999999999999876543
No 96
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.33 E-value=0.13 Score=34.06 Aligned_cols=27 Identities=7% Similarity=0.082 Sum_probs=23.8
Q ss_pred eEeeeeecccCccccchhhhhhhhhhc
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.+++.++|.+|+|||++++.|......
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~ 55 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVD 55 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 578999999999999999999876653
No 97
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.31 E-value=0.16 Score=32.89 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=21.3
Q ss_pred CceEeeeeecccCccccchhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r 54 (79)
.-.+.+.++|.+|+|||++++.|.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999999985
No 98
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.30 E-value=0.15 Score=32.29 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=24.2
Q ss_pred CceEeeeeecccCccccchhhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
.-.+++.++|..|.|||++++.|.....
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~ 41 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEV 41 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578999999999999999999986543
No 99
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.08 E-value=0.13 Score=32.63 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=7.3
Q ss_pred CceEeeeeecccCccccchhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
...+++.++|.+|.|||++++.|...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEEC-----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 35689999999999999999999876
No 100
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.97 E-value=0.19 Score=32.43 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=25.1
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|.|||++++.|......
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~ 51 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFP 51 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 45789999999999999999999876653
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.92 E-value=0.15 Score=31.79 Aligned_cols=27 Identities=7% Similarity=0.208 Sum_probs=23.6
Q ss_pred ceEeeeeecccCccccchhhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
-.+++.++|..|.|||++++.|.....
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~ 43 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV 43 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc
Confidence 578999999999999999999986554
No 102
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=88.80 E-value=0.12 Score=36.14 Aligned_cols=25 Identities=4% Similarity=0.238 Sum_probs=22.6
Q ss_pred EeeeeecccCccccchhhhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~L 58 (79)
++++++|.+|+|||+++|.+.....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 7999999999999999999986654
No 103
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.71 E-value=0.24 Score=32.14 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=24.4
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
.-.+++.++|..|.|||++++.|....+..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~ 57 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG 57 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCC
Confidence 456899999999999999999998766543
No 104
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=88.62 E-value=0.2 Score=32.87 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=25.3
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|+||+++++.|......
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~ 39 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFN 39 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 56799999999999999999999876544
No 105
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.43 E-value=0.19 Score=32.53 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.7
Q ss_pred CceEeeeeecccCccccchhhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
...+++.++|..|+||+++++.|.....
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~ 54 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAF 54 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCC
Confidence 5679999999999999999999987654
No 106
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.39 E-value=0.15 Score=32.15 Aligned_cols=30 Identities=3% Similarity=0.101 Sum_probs=23.4
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
.-.+++.++|..|+|||++++.|.......
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~ 44 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSS 44 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 356789999999999999999998766544
No 107
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.14 E-value=0.25 Score=30.97 Aligned_cols=25 Identities=4% Similarity=0.251 Sum_probs=21.9
Q ss_pred eEeeeeecccCccccchhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.+++.++|.+|.|||++++.|....
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~ 31 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN 31 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999998643
No 108
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=88.01 E-value=0.21 Score=32.76 Aligned_cols=30 Identities=7% Similarity=-0.075 Sum_probs=24.5
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
-..+++.++|..|+|||++++.|.......
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~ 54 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPE 54 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCC
Confidence 456899999999999999999998766543
No 109
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=87.95 E-value=0.23 Score=31.96 Aligned_cols=28 Identities=11% Similarity=0.002 Sum_probs=24.3
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
-.+++.++|..|+|||++++.|......
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~ 35 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP 35 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4689999999999999999999876543
No 110
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.88 E-value=0.18 Score=32.03 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=20.2
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
+.+.++|.+|+|||++.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999876
No 111
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=87.85 E-value=0.23 Score=32.51 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=24.9
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|+|||++++.|......
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~ 54 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP 54 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56799999999999999999999876553
No 112
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.61 E-value=0.53 Score=30.59 Aligned_cols=28 Identities=4% Similarity=-0.183 Sum_probs=23.8
Q ss_pred CceEeeeeecccCccccchhhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
.-.+.+.++|..|+|||++.+.|.....
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4568899999999999999999987643
No 113
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=87.58 E-value=0.19 Score=32.40 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=23.1
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.-.+++.++|.+|.|||++++.|......
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~ 33 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYR 33 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 34678999999999999999999876643
No 114
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=87.48 E-value=0.19 Score=35.47 Aligned_cols=27 Identities=4% Similarity=0.208 Sum_probs=23.6
Q ss_pred ceEeeeeecccCccccchhhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
-.++++++|.+++|||+++|.+.....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce
Confidence 458899999999999999999986653
No 115
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.41 E-value=0.23 Score=31.87 Aligned_cols=27 Identities=7% Similarity=0.204 Sum_probs=23.0
Q ss_pred ceEeeeeecccCccccchhhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
-.+++.++|..|.|||++++.|.....
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~ 54 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEI 54 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCC
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCc
Confidence 468899999999999999999975443
No 116
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=87.38 E-value=0.27 Score=31.73 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=21.8
Q ss_pred ceEeeeeecccCccccchhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
..+.+.++|.+|+|||++++.|...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3588999999999999999998743
No 117
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.29 E-value=0.21 Score=32.33 Aligned_cols=28 Identities=0% Similarity=0.125 Sum_probs=24.6
Q ss_pred CceEeeeeecccCccccchhhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
.-.+++.++|..|.|||++++.|.....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5678899999999999999999987664
No 118
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.13 E-value=0.32 Score=31.22 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=23.3
Q ss_pred ceEeeeeecccCccccchhhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
..+.+.++|.+|.|||++++.|.....
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 468899999999999999999987543
No 119
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=86.92 E-value=0.23 Score=31.30 Aligned_cols=27 Identities=4% Similarity=0.126 Sum_probs=23.2
Q ss_pred ceEeeeeecccCccccchhhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
-.+++.++|..|.|||++++.|.....
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~ 47 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDV 47 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 468999999999999999999975443
No 120
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.67 E-value=0.32 Score=30.30 Aligned_cols=25 Identities=4% Similarity=0.251 Sum_probs=21.4
Q ss_pred eEeeeeecccCccccchhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.+.+.++|.+|.|||++++.|....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678999999999999999997543
No 121
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=86.60 E-value=0.13 Score=33.07 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=24.5
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.-.+++.++|..|.|||++++.|....+.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~ 56 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP 56 (204)
Confidence 56789999999999999999888765543
No 122
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=86.57 E-value=0.21 Score=32.03 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=22.8
Q ss_pred eEeeeeecccCccccchhhhhhhhhhc
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.+++.++|.+|.|||++++.|......
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~ 49 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA 49 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 457899999999999999999876544
No 123
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.57 E-value=0.34 Score=31.11 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=23.9
Q ss_pred CceEeeeeecccCccccchhhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
...+.+.++|.+|.|||++++.|.....
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4568999999999999999999886543
No 124
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=86.50 E-value=0.27 Score=33.22 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=23.3
Q ss_pred eEeeeeecccCccccchhhhhhhhhhc
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.|.+.++|.+|+|||++++.|......
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~ 39 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFD 39 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCC
Confidence 478999999999999999999876543
No 125
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.67 E-value=0.43 Score=29.71 Aligned_cols=24 Identities=4% Similarity=-0.003 Sum_probs=20.1
Q ss_pred CceEeeeeecccCccccchhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r 54 (79)
...+++.++|..|.|||++++.+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999995443
No 126
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=85.57 E-value=0.34 Score=30.73 Aligned_cols=26 Identities=8% Similarity=0.244 Sum_probs=22.7
Q ss_pred ceEeeeeecccCccccchhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
-.+.+.++|.+|+|||++++.|....
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC
Confidence 46889999999999999999987653
No 127
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=84.19 E-value=0.41 Score=32.23 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=23.2
Q ss_pred CceEeeeeecccCccccchhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.-.+++.++|.+|.|||++.|.|....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCC
Confidence 346899999999999999999998665
No 128
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=84.06 E-value=0.43 Score=30.11 Aligned_cols=24 Identities=4% Similarity=0.152 Sum_probs=21.0
Q ss_pred EeeeeecccCccccchhhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~ 57 (79)
+.+.++|.+|.|||++++.|....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999998654
No 129
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=84.06 E-value=0.18 Score=32.67 Aligned_cols=26 Identities=4% Similarity=0.006 Sum_probs=23.0
Q ss_pred ceEeeeeecccCccccchhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
-.+++.++|..|.|||++++.|....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 35789999999999999999998765
No 130
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=83.82 E-value=0.5 Score=31.65 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=22.2
Q ss_pred CceEeeeeecccCccccchhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~ 55 (79)
...+.+.++|.+|+|||++++.|..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999999874
No 131
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=83.26 E-value=0.42 Score=30.58 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=19.9
Q ss_pred CceEeeeeecccCccccchhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~ 55 (79)
.-.+++.++|..|+|||++++.+..
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3578899999999999999885544
No 132
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=83.23 E-value=0.52 Score=32.53 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=22.8
Q ss_pred eEeeeeecccCccccchhhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
.+++.++|..|.|||++++.|.....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~ 30 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQ 30 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC
Confidence 57899999999999999999986553
No 133
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=83.05 E-value=0.45 Score=30.45 Aligned_cols=27 Identities=4% Similarity=0.049 Sum_probs=21.8
Q ss_pred CceEeeeeecccCccccchhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.--+.+.++|.+|.||||+++.+....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334678999999999999999887544
No 134
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=82.61 E-value=0.52 Score=32.22 Aligned_cols=29 Identities=10% Similarity=0.011 Sum_probs=25.0
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+++.++|..|+|||++++.|....+.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~ 181 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFP 181 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCC
Confidence 55689999999999999999999876653
No 135
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=82.29 E-value=0.52 Score=30.40 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=21.6
Q ss_pred eEeeeeecccCccccchhhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
.+.+.++|.+|.|||++++.|....+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~ 50 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRL 50 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46799999999999999999986554
No 136
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=82.23 E-value=0.85 Score=29.49 Aligned_cols=27 Identities=7% Similarity=-0.076 Sum_probs=22.5
Q ss_pred CceEeeeeecccCccccchhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.-...+.++|..|.||||+.+.|....
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999987653
No 137
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=81.79 E-value=0.59 Score=32.00 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=22.4
Q ss_pred eEeeeeecccCccccchhhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
.+++.++|..|.|||+++|.|.....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 47899999999999999999976543
No 138
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=81.32 E-value=0.57 Score=34.19 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=21.3
Q ss_pred EeeeeecccCccccchhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~ 56 (79)
.+++++|.+++|||+++|+++..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 47999999999999999999977
No 139
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=79.77 E-value=0.76 Score=31.81 Aligned_cols=25 Identities=4% Similarity=0.191 Sum_probs=22.2
Q ss_pred eEeeeeecccCccccchhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.+++.++|..|.|||+++|.|....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999998665
No 140
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=78.73 E-value=0.6 Score=31.71 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=23.7
Q ss_pred eEeeeeecccCccccchhhhhhhhhhc
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.+.+.++|..+.|||+++|.|....+.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 457999999999999999999887754
No 141
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=78.62 E-value=0.82 Score=31.11 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=22.2
Q ss_pred ceEeeeeeccc---------Cccccchhhhhhh
Q psy5599 32 FEFTLMVVDLK---------DVTSNVHYENFRC 55 (79)
Q Consensus 32 ~~fn~mvvgls---------glgkst~~e~~r~ 55 (79)
..|.+.++|.+ ++|||++++.|..
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 56899999999 9999999999987
No 142
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=78.23 E-value=1 Score=27.49 Aligned_cols=27 Identities=11% Similarity=0.024 Sum_probs=20.5
Q ss_pred CceEeeeeecccCccccchhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
+-.-++++.|.+|+|||++...+....
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 333457899999999999987776543
No 143
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=77.87 E-value=0.91 Score=31.75 Aligned_cols=25 Identities=0% Similarity=0.005 Sum_probs=21.8
Q ss_pred eEeeeeecccCccccchhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.+.+.++|.+|.|||++++.|....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 4678999999999999999998643
No 144
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=77.58 E-value=0.85 Score=33.29 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=21.9
Q ss_pred EeeeeecccCccccchhhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.+++++|.+++|||+++|++....
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 578999999999999999999875
No 145
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=76.95 E-value=0.93 Score=31.86 Aligned_cols=24 Identities=4% Similarity=-0.064 Sum_probs=21.5
Q ss_pred eEeeeeecccCccccchhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~ 56 (79)
.+.+.++|.+|+|||++.+.|...
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 478999999999999999998865
No 146
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=76.31 E-value=1.3 Score=31.67 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=23.8
Q ss_pred eeeeecccCccccchhhhhhhhhhcCCC
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCRKLAGLG 62 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~~L~~~~ 62 (79)
.+.++|.+|.|||++.|.|....+.+.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~ 63 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCC
Confidence 6899999999999999999987664433
No 147
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=76.28 E-value=1 Score=31.82 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.7
Q ss_pred eeeeecccCccccchhhhhhhhhhcC
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
.+.++|.+|.|||++.|.|...++..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~i 34 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAP 34 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCceee
Confidence 48899999999999999999877643
No 148
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=76.13 E-value=0.72 Score=32.88 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=22.9
Q ss_pred ceEeeeeecccCccccchhhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
-.+++.++|..|+|||++++.|....+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~ 190 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI 190 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC
Confidence 457899999999999999999976553
No 149
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=75.72 E-value=1.1 Score=28.69 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=18.3
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+.++|.+|.||||+.+.+...
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999988753
No 150
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=75.16 E-value=1.2 Score=28.92 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=18.2
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+.++|.+|.||||+.+.+...
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999888654
No 151
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=75.14 E-value=1 Score=32.28 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=22.5
Q ss_pred ceEeeeeecccCccccchhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
-.+.+.++|.+|.|||++++.|....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35789999999999999999987654
No 152
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=75.13 E-value=1.1 Score=30.95 Aligned_cols=23 Identities=0% Similarity=0.124 Sum_probs=20.4
Q ss_pred eeeeecccCccccchhhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~~ 57 (79)
++.++|..|.|||+++|.|....
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 67899999999999999997654
No 153
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=74.61 E-value=0.9 Score=31.22 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=22.5
Q ss_pred EeeeeecccCccccchhhhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~L 58 (79)
..+.++|..+.|||+++|.+....+
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 5799999999999999999987765
No 154
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=74.30 E-value=1.4 Score=33.33 Aligned_cols=27 Identities=4% Similarity=-0.020 Sum_probs=22.4
Q ss_pred ceEeeeeecccCccccchhhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
-.+++.++|..++|||++++.|.....
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~ 66 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETF 66 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC---
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999987764
No 155
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=73.29 E-value=1.5 Score=26.87 Aligned_cols=27 Identities=7% Similarity=-0.005 Sum_probs=20.7
Q ss_pred CceEeeeeecccCccccchhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
+-.-++++.|.+|+|||++...+....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 334467899999999999987776543
No 156
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=71.21 E-value=1.7 Score=34.37 Aligned_cols=30 Identities=13% Similarity=0.050 Sum_probs=26.0
Q ss_pred CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
+-.+++.++|..+.|||+++|.|....+..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~ 96 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLP 96 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 457899999999999999999999776544
No 157
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=71.08 E-value=1.7 Score=32.01 Aligned_cols=25 Identities=8% Similarity=0.218 Sum_probs=22.1
Q ss_pred eEeeeeecccCccccchhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.+++.++|.+|.|||++++.+....
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999999999999997654
No 158
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=70.58 E-value=1.7 Score=30.73 Aligned_cols=20 Identities=5% Similarity=0.047 Sum_probs=18.3
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
.+.++|.+|.||||+++.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999987
No 159
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=70.41 E-value=1.6 Score=32.42 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.8
Q ss_pred eEeeeeecccCccccchhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.+.+.++|.+++||||++|.+....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3578899999999999999998755
No 160
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=69.97 E-value=1.8 Score=30.48 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=21.8
Q ss_pred eeeecccCccccchhhhhhhhhhcC
Q psy5599 36 LMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
+-++|..|.||||+.|.|...++..
T Consensus 13 v~ivG~~nvGKSTLin~l~g~~~~i 37 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGTKVSI 37 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTSCCSC
T ss_pred EEEECCCCCcHHHHHHHHhCCCccc
Confidence 6789999999999999999877653
No 161
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=68.72 E-value=0.96 Score=32.71 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=18.9
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.++|.+|.||||++|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHhcc
Confidence 579999999999999998864
No 162
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=68.66 E-value=1.7 Score=27.77 Aligned_cols=17 Identities=0% Similarity=0.102 Sum_probs=15.3
Q ss_pred eeeecccCccccchhhh
Q psy5599 36 LMVVDLKDVTSNVHYEN 52 (79)
Q Consensus 36 ~mvvglsglgkst~~e~ 52 (79)
+.++|.+|.||||+...
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999999984
No 163
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=68.35 E-value=2.2 Score=28.10 Aligned_cols=22 Identities=5% Similarity=-0.044 Sum_probs=19.1
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
-+.++|.+|.||||+.+.+...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4778999999999999988764
No 164
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=68.30 E-value=2.7 Score=25.96 Aligned_cols=21 Identities=5% Similarity=0.137 Sum_probs=18.1
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.++|.+|.||||+...+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999877765
No 165
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=68.28 E-value=1.6 Score=32.24 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=19.9
Q ss_pred EeeeeecccCccccchhhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~ 57 (79)
+++.++|..++||||++|.+....
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 467899999999999999998765
No 166
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=67.73 E-value=2.3 Score=28.45 Aligned_cols=21 Identities=0% Similarity=0.069 Sum_probs=18.4
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+-++|-||.||+|+.+.++.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999998765
No 167
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=67.71 E-value=2.2 Score=31.40 Aligned_cols=27 Identities=4% Similarity=-0.029 Sum_probs=23.4
Q ss_pred ceEeeeeecccCccccchhhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
-.+++.++|.+++|||+++|.|.....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~ 200 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEER 200 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 358999999999999999999986653
No 168
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=66.82 E-value=2.7 Score=26.86 Aligned_cols=26 Identities=4% Similarity=-0.211 Sum_probs=20.4
Q ss_pred ceEeeeeecccCccccchhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
-.-++++.|..|+|||++...+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999987765543
No 169
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=66.51 E-value=2.8 Score=26.27 Aligned_cols=23 Identities=4% Similarity=-0.077 Sum_probs=19.0
Q ss_pred eeeeecccCccccchhhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~~ 57 (79)
.+.+.|..|+|||++...+....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999988776543
No 170
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=66.50 E-value=2.4 Score=27.71 Aligned_cols=21 Identities=0% Similarity=-0.012 Sum_probs=18.1
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+.++|.+|.||||+.+.+...
T Consensus 7 i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999887653
No 171
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=65.74 E-value=4.5 Score=25.14 Aligned_cols=22 Identities=5% Similarity=-0.059 Sum_probs=18.4
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
++++.|..|+|||++...+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999988776654
No 172
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=65.61 E-value=1.8 Score=33.35 Aligned_cols=27 Identities=4% Similarity=0.020 Sum_probs=24.1
Q ss_pred eEeeeeecccCccccchhhhhhhhhhc
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.+.+.++|..+.||||++|.|....+.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 467999999999999999999988764
No 173
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=65.30 E-value=2.4 Score=31.32 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=22.8
Q ss_pred eEeeeeecccCccccchhhhhhhhhhc
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+.++|.+|+|||+++|.|......
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~ 49 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERIS 49 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 357899999999999999999876543
No 174
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=65.25 E-value=2.7 Score=25.40 Aligned_cols=19 Identities=0% Similarity=0.107 Sum_probs=16.7
Q ss_pred eeeeecccCccccchhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENF 53 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~ 53 (79)
.+.++|.+|.||||+-+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999998877
No 175
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=65.15 E-value=2.4 Score=30.25 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=23.4
Q ss_pred eEeeeeecccCccccchhhhhhhhhhc
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
...+.++|..+.|||+++|.|....+.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 357999999999999999999877654
No 176
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=65.09 E-value=2.4 Score=31.26 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=19.4
Q ss_pred eeeeecccCccccchhhhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~~L 58 (79)
.+.++|.+++|||+++|.|...+.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~ 26 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKK 26 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987653
No 177
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=65.00 E-value=2.9 Score=30.86 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=23.8
Q ss_pred ceEeeeeecccCccccchhhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
-.+++.++|..++|||++++.|.....
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~ 347 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS 347 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999987663
No 178
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=64.91 E-value=3.7 Score=31.05 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=22.1
Q ss_pred EeeeeecccCccccchhhhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~L 58 (79)
+++.++|..|.|||++.|.|.....
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 5689999999999999999987653
No 179
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=64.86 E-value=2.4 Score=31.25 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=20.7
Q ss_pred EeeeeecccCccccchhhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~ 57 (79)
+++-++|.+|.||||+++.+....
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988664
No 180
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=64.83 E-value=2.5 Score=31.26 Aligned_cols=22 Identities=5% Similarity=-0.068 Sum_probs=19.0
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.+.++|.+|.||||+++.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 4689999999999999988753
No 181
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=64.26 E-value=2.6 Score=29.53 Aligned_cols=21 Identities=10% Similarity=0.033 Sum_probs=18.2
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.++|.+|.||||+.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHST
T ss_pred eEEEECCCCCcHHHHHHHhcc
Confidence 368899999999999998864
No 182
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=64.22 E-value=2.4 Score=31.20 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=21.8
Q ss_pred EeeeeecccCccccchhhhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~L 58 (79)
..+.++|..++|||+++|.|.....
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~ 28 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERI 28 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4688999999999999999987654
No 183
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=64.04 E-value=2.8 Score=28.35 Aligned_cols=21 Identities=5% Similarity=-0.043 Sum_probs=18.0
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+-++|.+|.||||+.+.+...
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 468899999999999988754
No 184
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=64.02 E-value=3.3 Score=26.41 Aligned_cols=24 Identities=8% Similarity=-0.129 Sum_probs=19.3
Q ss_pred EeeeeecccCccccchhhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~ 57 (79)
-++++.|..|+|||++...+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999876665443
No 185
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=63.66 E-value=2.4 Score=29.73 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=22.1
Q ss_pred eeeeecccCccccchhhhhhhhhhc
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.+-++|..|.||||+.|.+....+.
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~~ 34 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKIS 34 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc
Confidence 4889999999999999999987654
No 186
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=63.17 E-value=3 Score=27.20 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=17.8
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
++.++|.+|.||||+...+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999998766543
No 187
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=63.08 E-value=3.5 Score=30.19 Aligned_cols=36 Identities=3% Similarity=0.145 Sum_probs=20.9
Q ss_pred CCChHHHHHHhhCceEeeeeecccCccccchhhhhh
Q psy5599 19 LPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 19 lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r 54 (79)
++.|...+-.+..-...+++.|.+|.||+|+.-.++
T Consensus 19 Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 19 IDRNLREDGERSARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp ------------CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHHH
Confidence 444555555555668899999999999999977663
No 188
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=62.76 E-value=2.8 Score=26.29 Aligned_cols=20 Identities=5% Similarity=-0.077 Sum_probs=17.1
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.++|.+|.|||++.+.+.-
T Consensus 29 ~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56999999999999887653
No 189
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=62.71 E-value=3.1 Score=25.67 Aligned_cols=25 Identities=0% Similarity=-0.086 Sum_probs=20.3
Q ss_pred CceEeeeeecccCccccchhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~ 55 (79)
....++++.|++|+||+++-..+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999988766654
No 190
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=62.45 E-value=2.7 Score=31.55 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=23.0
Q ss_pred CceEeeeeecccCccccchhhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
+..+++.++|..+.|||++.+.|..+.+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~ 59 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNV 59 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC---
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5678999999999999999999987665
No 191
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=62.42 E-value=3.6 Score=25.56 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=18.0
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887765
No 192
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=62.13 E-value=3.6 Score=28.74 Aligned_cols=23 Identities=0% Similarity=-0.162 Sum_probs=19.4
Q ss_pred EeeeeecccCccccchhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~ 56 (79)
..+.+.|.+|.||||+...+...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999998887653
No 193
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=61.65 E-value=3.4 Score=25.87 Aligned_cols=21 Identities=5% Similarity=0.045 Sum_probs=17.8
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.||||+...+..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877654
No 194
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=61.27 E-value=2.9 Score=29.78 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=17.8
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.++++|.+|.||||+...+-.
T Consensus 104 vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999887653
No 195
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=60.76 E-value=4.4 Score=24.75 Aligned_cols=21 Identities=0% Similarity=-0.102 Sum_probs=17.4
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.||||+-+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999777654
No 196
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=60.30 E-value=3.8 Score=27.11 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=18.9
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.+.++|.+|.||||+.+.+...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999887754
No 197
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=60.06 E-value=4 Score=25.35 Aligned_cols=21 Identities=0% Similarity=-0.058 Sum_probs=16.7
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.||||+-..+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999998665543
No 198
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=60.01 E-value=2.4 Score=27.18 Aligned_cols=21 Identities=5% Similarity=0.094 Sum_probs=17.8
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+.++|.+|.||||+.+.+...
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999998887643
No 199
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=59.93 E-value=3.6 Score=25.89 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=17.3
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.++|.+|.||||+...+..
T Consensus 12 i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999887754
No 200
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=59.58 E-value=6.6 Score=30.95 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=24.0
Q ss_pred CceEeeeeecccCccccchhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
+-...++++|..++|||+++|.+....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 556889999999999999999998765
No 201
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=59.57 E-value=4 Score=26.15 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=18.2
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.+.++|.+|.||||+...+...
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998776543
No 202
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=59.12 E-value=3.3 Score=30.08 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=21.5
Q ss_pred ceEeeeeecccCccccchhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~ 55 (79)
-.+++.++|..+.|||++++.|..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~ 30 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITG 30 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999875
No 203
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=58.98 E-value=3.6 Score=26.57 Aligned_cols=21 Identities=5% Similarity=0.025 Sum_probs=17.5
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.++|.+|.||||+...+..
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999877654
No 204
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=58.97 E-value=6.6 Score=28.05 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=22.3
Q ss_pred CceEeeeeecccCccccchhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
+-.+.+.++|..|.||||+.+++-..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 55678999999999999999998654
No 205
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=58.75 E-value=4.1 Score=27.52 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=18.2
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+-++|.+|.||+|+.+.+...
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHhh
Confidence 568999999999999988754
No 206
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=58.37 E-value=4.2 Score=29.22 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=21.0
Q ss_pred eEeeeeecccCccccchhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~ 56 (79)
.+.+.++|..|.||||++|.+-..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 567899999999999999998753
No 207
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=58.28 E-value=3.7 Score=27.26 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=17.5
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+.+.+..
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57899999999999988765
No 208
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=58.26 E-value=4.1 Score=26.61 Aligned_cols=21 Identities=10% Similarity=-0.008 Sum_probs=17.8
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+-++|.+|.||||+.+.+...
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhh
Confidence 467899999999998888654
No 209
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=58.09 E-value=3.4 Score=25.46 Aligned_cols=24 Identities=4% Similarity=-0.071 Sum_probs=18.7
Q ss_pred CceEeeeeecccCccccchhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r 54 (79)
....++++.|+.|+||+++-..+.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCCcEEEECCCCccHHHHHHHHH
Confidence 445679999999999987755544
No 210
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=58.05 E-value=4.3 Score=25.43 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=17.3
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
++.+.|.+|.||||+-..+..
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHH
Confidence 467999999999999776653
No 211
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=57.99 E-value=3.6 Score=27.44 Aligned_cols=22 Identities=5% Similarity=0.033 Sum_probs=18.5
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.+++.|.+|+|||++-..+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999998777654
No 212
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=57.80 E-value=3.8 Score=31.07 Aligned_cols=25 Identities=0% Similarity=0.054 Sum_probs=20.1
Q ss_pred eEeeeeecccCccccchhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.+++.++|..+.|||+++|.|....
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998764
No 213
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=57.54 E-value=4.1 Score=27.94 Aligned_cols=22 Identities=5% Similarity=0.101 Sum_probs=18.7
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.+.+.|.+|+|||++...+...
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999998877654
No 214
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=57.53 E-value=4.8 Score=27.83 Aligned_cols=23 Identities=4% Similarity=-0.057 Sum_probs=19.3
Q ss_pred eeeeecccCccccchhhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~~ 57 (79)
.+.+.|.+|+|||++...+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999988776543
No 215
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=57.48 E-value=5 Score=26.34 Aligned_cols=23 Identities=0% Similarity=-0.061 Sum_probs=18.7
Q ss_pred EeeeeecccCccccchhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~ 56 (79)
-.+++.|.+|+|||++-..+...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999988776543
No 216
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=57.40 E-value=6 Score=28.67 Aligned_cols=30 Identities=7% Similarity=-0.050 Sum_probs=23.4
Q ss_pred HHhhCceEeeeeecccCccccchhhhhhhh
Q psy5599 27 AVKKGFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 27 ~~K~g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
|....-.+++.++|..+.|||++.+.|...
T Consensus 5 ~~~~~~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 5 FVRTKPHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp ----CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 334456789999999999999999999864
No 217
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=57.37 E-value=5.2 Score=24.83 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=17.6
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.||||+.+.+..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999777654
No 218
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=57.29 E-value=4.4 Score=25.65 Aligned_cols=21 Identities=0% Similarity=-0.053 Sum_probs=17.8
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+-++|.+|.||||+...+...
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHhh
Confidence 568899999999998887654
No 219
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=56.99 E-value=4.4 Score=26.33 Aligned_cols=22 Identities=0% Similarity=-0.097 Sum_probs=18.0
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
..+.++|.+|.||||+...+..
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999876653
No 220
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=56.93 E-value=5.1 Score=25.16 Aligned_cols=24 Identities=13% Similarity=-0.164 Sum_probs=19.3
Q ss_pred eeeeecccCccccchhhhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~~L 58 (79)
.+.+.|.+|.|||++...+.....
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999877665443
No 221
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=56.72 E-value=4.6 Score=25.54 Aligned_cols=21 Identities=5% Similarity=-0.026 Sum_probs=17.6
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+-++|.+|.||||+.+.+...
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 678999999999998877543
No 222
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=56.65 E-value=3.5 Score=30.94 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=21.7
Q ss_pred CceEeeeeecccCccccchhhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
...+.+.++|.++.||||+++.+.....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~ 47 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA 47 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 3446789999999999999999987644
No 223
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=56.59 E-value=3.9 Score=29.52 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=18.4
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
-.++++|.+|.||||+...+-.
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999877654
No 224
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=56.48 E-value=5.2 Score=27.08 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=18.3
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.+.+.|..|+|||++...+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5789999999999998777543
No 225
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=56.42 E-value=4.6 Score=29.81 Aligned_cols=26 Identities=4% Similarity=-0.003 Sum_probs=22.7
Q ss_pred ceEeeeeecccCccccchhhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
-.+++.++|.++.|||++++.|....
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCC
Confidence 46889999999999999999998553
No 226
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=56.40 E-value=5 Score=27.17 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=18.8
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.+.+.|..|+|||++...+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999998877654
No 227
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=56.34 E-value=4.4 Score=27.08 Aligned_cols=25 Identities=0% Similarity=0.145 Sum_probs=19.7
Q ss_pred CceEeeeeecccCccccchhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~ 55 (79)
...-++++.|++|+||+++-..+..
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHH
Confidence 3456789999999999988766554
No 228
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=56.21 E-value=4.2 Score=26.43 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=17.0
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+.+.+..
T Consensus 23 ~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 56899999999999887654
No 229
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=55.88 E-value=4.1 Score=28.92 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=18.3
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.++++|.+|.||||+...+-..
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999998876543
No 230
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=55.85 E-value=4.5 Score=27.80 Aligned_cols=24 Identities=8% Similarity=-0.039 Sum_probs=19.6
Q ss_pred eEeeeeecccCccccchhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~ 56 (79)
.-++++.|.+|+|||++...+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999998777654
No 231
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=55.73 E-value=4.8 Score=25.01 Aligned_cols=21 Identities=0% Similarity=0.012 Sum_probs=17.5
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.++|.+|.||||+...+..
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999777654
No 232
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=55.70 E-value=4.5 Score=29.44 Aligned_cols=23 Identities=4% Similarity=0.101 Sum_probs=19.4
Q ss_pred eeeecccCccccchhhhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~~L 58 (79)
+.++|.+|.|||+++|.+.....
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCc
Confidence 88999999999999999986543
No 233
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=55.69 E-value=2.7 Score=27.54 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=17.4
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.++|.+|.||||+.+.+-.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999887653
No 234
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=55.42 E-value=4.2 Score=26.04 Aligned_cols=22 Identities=5% Similarity=-0.207 Sum_probs=18.6
Q ss_pred eeeecccCccccchhhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~~ 57 (79)
+.++|.+|.||||+...+....
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999988876543
No 235
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=55.20 E-value=4.8 Score=27.38 Aligned_cols=25 Identities=4% Similarity=-0.129 Sum_probs=20.0
Q ss_pred ceEeeeeecccCccccchhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
..-++++.|.+|+|||++-..+...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999988776543
No 236
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=55.12 E-value=5.9 Score=24.83 Aligned_cols=21 Identities=0% Similarity=-0.039 Sum_probs=17.7
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.||||+-..+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 367899999999999887754
No 237
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=54.86 E-value=5.8 Score=26.36 Aligned_cols=23 Identities=4% Similarity=-0.006 Sum_probs=18.7
Q ss_pred EeeeeecccCccccchhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~ 56 (79)
-.+.+.|.+|+|||++-..+-..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36899999999999987766543
No 238
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=54.68 E-value=6 Score=26.51 Aligned_cols=24 Identities=0% Similarity=-0.050 Sum_probs=19.1
Q ss_pred eEeeeeecccCccccchhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~ 56 (79)
.-++++.|.+|+|||++-..+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999988776543
No 239
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=54.52 E-value=5.4 Score=25.45 Aligned_cols=21 Identities=0% Similarity=0.069 Sum_probs=17.6
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+-++|.+|.||||+.+.+...
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 457999999999998887753
No 240
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=54.45 E-value=4.6 Score=24.94 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=16.5
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
.+.+.|.+|.||||+-..+-
T Consensus 6 ~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47789999999999876554
No 241
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=54.34 E-value=7 Score=24.22 Aligned_cols=22 Identities=5% Similarity=0.037 Sum_probs=17.8
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
..+.+.|..|.||||+-..+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999776643
No 242
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=54.21 E-value=4.8 Score=26.59 Aligned_cols=21 Identities=5% Similarity=-0.053 Sum_probs=17.4
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+.++|.+|.||||+...+...
T Consensus 4 i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhh
Confidence 678999999999998766543
No 243
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=54.05 E-value=5.2 Score=27.56 Aligned_cols=23 Identities=0% Similarity=-0.139 Sum_probs=19.0
Q ss_pred eEeeeeecccCccccchhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~ 55 (79)
.-++++.|.+|+||+++-..+..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34689999999999999877744
No 244
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=53.66 E-value=6.4 Score=29.39 Aligned_cols=27 Identities=7% Similarity=0.023 Sum_probs=23.8
Q ss_pred hCceEeeeeecccCccccchhhhhhhh
Q psy5599 30 KGFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 30 ~g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
..-.+++.++|..+.|||++++.|...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999999998654
No 245
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=53.66 E-value=7.1 Score=28.30 Aligned_cols=25 Identities=4% Similarity=-0.124 Sum_probs=22.1
Q ss_pred eEeeeeecccCccccchhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.+++.++|..+.||||+.+.|....
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~ 27 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKIL 27 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChh
Confidence 4789999999999999999998653
No 246
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=53.45 E-value=5.5 Score=25.65 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=16.9
Q ss_pred EeeeeecccCccccchhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r 54 (79)
..+.++|.+|.||||+-..+-
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347889999999999866554
No 247
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=53.20 E-value=7 Score=28.76 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=21.9
Q ss_pred ceEeeeeecccCccccchhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
-.+++.++|..|.|||++.+.|...
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3588999999999999999998754
No 248
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=53.05 E-value=5.1 Score=25.49 Aligned_cols=22 Identities=5% Similarity=0.099 Sum_probs=18.1
Q ss_pred eeeecccCccccchhhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~~ 57 (79)
+.+.|.+|.||||+...+....
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999988776443
No 249
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=52.94 E-value=5.7 Score=26.61 Aligned_cols=24 Identities=4% Similarity=-0.015 Sum_probs=19.0
Q ss_pred eEeeeeecccCccccchhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~ 56 (79)
.-++++.|.+|+|||++-..+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999887766543
No 250
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=52.89 E-value=7.4 Score=28.56 Aligned_cols=27 Identities=4% Similarity=-0.097 Sum_probs=23.0
Q ss_pred CceEeeeeecccCccccchhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.-.+++.++|..+.|||++.+.|....
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhc
Confidence 346899999999999999999987543
No 251
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=52.65 E-value=5.2 Score=25.24 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=17.1
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.++|.+|.||||+...+..
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 67899999999999887743
No 252
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=52.25 E-value=8.1 Score=24.26 Aligned_cols=23 Identities=4% Similarity=0.010 Sum_probs=18.5
Q ss_pred eeeeecccCccccchhhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~~ 57 (79)
.+.+.|.+|.|||++...+....
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999988776544
No 253
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=52.23 E-value=5.9 Score=24.98 Aligned_cols=22 Identities=5% Similarity=-0.002 Sum_probs=17.9
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
..+.++|.+|.||||+...+..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3478899999999999877654
No 254
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=51.89 E-value=5.1 Score=29.43 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=18.4
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.++++|.+|.||||+...+-..
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhh
Confidence 4889999999999998876543
No 255
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=51.82 E-value=7 Score=26.39 Aligned_cols=23 Identities=4% Similarity=-0.054 Sum_probs=19.0
Q ss_pred EeeeeecccCccccchhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~ 56 (79)
-.+++.|.+|+|||++-..+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999988776543
No 256
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=51.76 E-value=5.5 Score=25.35 Aligned_cols=20 Identities=5% Similarity=-0.280 Sum_probs=17.7
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.+.|.+|.|||++...+-.
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999887765
No 257
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=51.64 E-value=6.1 Score=25.41 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=16.8
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
.+.++|.+|.||||+-..+-
T Consensus 27 ~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47789999999999977664
No 258
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=50.98 E-value=6.9 Score=26.44 Aligned_cols=22 Identities=0% Similarity=-0.088 Sum_probs=17.7
Q ss_pred eEeeeeecccCccccchhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r 54 (79)
..++++.|.+|+|||++-..+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999876444
No 259
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=50.94 E-value=5.3 Score=31.09 Aligned_cols=21 Identities=10% Similarity=0.232 Sum_probs=18.0
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.++++|.+|.||||+...+-.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHH
Confidence 478999999999999887654
No 260
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=50.82 E-value=6.6 Score=29.42 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=19.3
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+-++|.+|.||||+++.+..
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 588999999999999999886
No 261
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=50.77 E-value=5.8 Score=25.71 Aligned_cols=20 Identities=5% Similarity=0.074 Sum_probs=17.2
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.++|.+|.||||+...+..
T Consensus 33 ~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999887763
No 262
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=50.71 E-value=6.9 Score=27.10 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=19.0
Q ss_pred EeeeeecccCccccchhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~ 56 (79)
-.+++.|..|+|||++...+...
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999988776654
No 263
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=50.51 E-value=5.8 Score=26.92 Aligned_cols=19 Identities=0% Similarity=-0.018 Sum_probs=16.2
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+-
T Consensus 34 ~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEECSTTSSHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 5799999999999977654
No 264
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=50.17 E-value=6.5 Score=26.12 Aligned_cols=20 Identities=0% Similarity=0.014 Sum_probs=17.3
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
.+.++|.+|.||||+...+.
T Consensus 29 ~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999987765
No 265
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=50.09 E-value=6.4 Score=29.48 Aligned_cols=23 Identities=4% Similarity=0.095 Sum_probs=19.3
Q ss_pred EeeeeecccCccccchhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~ 56 (79)
.+++++|..|.||||+.+++-..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999998887653
No 266
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=50.01 E-value=8.5 Score=25.89 Aligned_cols=23 Identities=0% Similarity=-0.112 Sum_probs=18.8
Q ss_pred eEeeeeecccCccccchhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~ 55 (79)
-..+.++|.+|.||||+-..+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999776643
No 267
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=49.58 E-value=7.2 Score=25.83 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=17.7
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.|||++...+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999877654
No 268
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=49.49 E-value=7.8 Score=24.13 Aligned_cols=21 Identities=0% Similarity=0.036 Sum_probs=17.6
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|..|.||||+-..+..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999777653
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=49.41 E-value=8.2 Score=24.78 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=17.4
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
++.+.|.+|.||||+-+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999777643
No 270
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=49.32 E-value=8.2 Score=24.84 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=17.3
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
++.+.|.+|.||||+-+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999777643
No 271
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=49.17 E-value=8 Score=28.05 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=21.9
Q ss_pred CceEeeeeecccCccccchhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r 54 (79)
.-.+++.++|..+.|||++.+.|.
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~ 31 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALT 31 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999987
No 272
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=49.16 E-value=5.7 Score=28.66 Aligned_cols=21 Identities=5% Similarity=0.012 Sum_probs=17.9
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.++|.+|.||||+.+.+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999887754
No 273
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=49.14 E-value=6.1 Score=25.30 Aligned_cols=21 Identities=0% Similarity=-0.108 Sum_probs=17.6
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+-++|.+|.||||+.+.+..
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999877654
No 274
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=49.05 E-value=8.1 Score=25.92 Aligned_cols=26 Identities=0% Similarity=-0.137 Sum_probs=20.9
Q ss_pred CceEeeeeecccCccccchhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
...-++++.|.+|+|||++-..+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999887766544
No 275
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=48.98 E-value=8.3 Score=28.68 Aligned_cols=27 Identities=7% Similarity=-0.029 Sum_probs=21.6
Q ss_pred CceEeeeeecccCccccchhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
+..-+++++|.+|+|||++.+.+....
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 444578999999999999988776553
No 276
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=48.54 E-value=8.6 Score=23.79 Aligned_cols=20 Identities=5% Similarity=-0.021 Sum_probs=13.1
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
.+.+.|..|.||||+-+.+.
T Consensus 7 ~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp EEEEECCC----CHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999999977764
No 277
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=48.49 E-value=6.2 Score=26.50 Aligned_cols=19 Identities=0% Similarity=-0.029 Sum_probs=16.2
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+-
T Consensus 33 ~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEECTTSCHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999987654
No 278
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=48.38 E-value=7.5 Score=29.06 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=31.7
Q ss_pred CccCCceeeeeCC--ChHHHHHHhhCceEeeeeecccCccccchhhhhhhh
Q psy5599 8 KEVDGYIGFANLP--NQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 8 ~~~~~~~G~~~lp--nq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
.++...+|-..+- ...-...++.+-.-++++.|.+|+|||++-..+...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3445556654432 233445555554467899999999999998776644
No 279
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=48.10 E-value=10 Score=23.89 Aligned_cols=21 Identities=0% Similarity=-0.032 Sum_probs=18.0
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|..|.||||+-+.+..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999887754
No 280
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=48.09 E-value=6.3 Score=29.34 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=22.1
Q ss_pred eEeeeeecccCccccchhhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
-..+-++|..|.||||+++.+-....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 35678999999999999999987554
No 281
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=48.07 E-value=6.3 Score=29.96 Aligned_cols=24 Identities=8% Similarity=0.194 Sum_probs=22.2
Q ss_pred EeeeeecccCccccchhhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~ 57 (79)
+.+.++|..+.|||+++|.|....
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~ 267 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNED 267 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHT
T ss_pred CEEEEECcCCCcHHHHHHHHHCCC
Confidence 789999999999999999998775
No 282
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=47.90 E-value=7 Score=28.69 Aligned_cols=21 Identities=5% Similarity=0.129 Sum_probs=17.8
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
-+.++|.+|.||||+...+..
T Consensus 260 lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999887654
No 283
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=47.71 E-value=6.8 Score=26.60 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=16.2
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+.
T Consensus 34 ~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp EEEECSTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999977654
No 284
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=47.71 E-value=7.9 Score=28.72 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=19.8
Q ss_pred ceEeeeeecccCccccchhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~ 55 (79)
..+.+.++|.+|.||||+...|..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999877654
No 285
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=47.53 E-value=7.8 Score=24.17 Aligned_cols=20 Identities=5% Similarity=0.097 Sum_probs=16.7
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
++.++|.+|.||||+-..+-
T Consensus 7 ~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47789999999999877664
No 286
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=47.37 E-value=7.5 Score=26.79 Aligned_cols=24 Identities=0% Similarity=-0.112 Sum_probs=19.2
Q ss_pred EeeeeecccCccccchhhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~ 57 (79)
-.+++.|.+|+|||++...+....
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 358899999999999877766543
No 287
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=47.27 E-value=7.5 Score=25.50 Aligned_cols=19 Identities=5% Similarity=0.031 Sum_probs=13.0
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+.+.+.
T Consensus 30 i~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEECSCC----CHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999988877
No 288
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=47.10 E-value=8.2 Score=26.14 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=18.5
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.+.++|.+|.||||+-..+...
T Consensus 6 lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999998777653
No 289
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=47.00 E-value=7.5 Score=27.37 Aligned_cols=21 Identities=0% Similarity=0.004 Sum_probs=18.1
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+.+.|.+|.||||+.+.+-..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEecCCCCHHHHHHHHHhh
Confidence 568999999999999887754
No 290
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=46.86 E-value=8.4 Score=26.37 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=18.4
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
-++++.|..|+|||++-..+..
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 3589999999999998777664
No 291
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=46.42 E-value=7.7 Score=27.12 Aligned_cols=25 Identities=4% Similarity=0.018 Sum_probs=20.1
Q ss_pred CceEeeeeecccCccccchhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~ 55 (79)
....++++.|++|+||+++-..+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHH
Confidence 4556799999999999988766654
No 292
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=46.07 E-value=8.4 Score=26.86 Aligned_cols=22 Identities=5% Similarity=-0.022 Sum_probs=17.7
Q ss_pred eeee--ecccCccccchhhhhhhh
Q psy5599 35 TLMV--VDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mv--vglsglgkst~~e~~r~~ 56 (79)
.+.+ .|..|+|||++...+...
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHH
Confidence 4667 899999999998777644
No 293
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=45.83 E-value=8.2 Score=26.67 Aligned_cols=20 Identities=5% Similarity=0.032 Sum_probs=17.2
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.++|.+|.||||+...+..
T Consensus 28 v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 78999999999999877654
No 294
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=45.79 E-value=7.4 Score=25.15 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=18.4
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
..+-+.|.+|.||||+.+.+..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999887654
No 295
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=45.73 E-value=11 Score=28.11 Aligned_cols=25 Identities=8% Similarity=0.123 Sum_probs=21.8
Q ss_pred ceEeeeeecccCccccchhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
-.+++.++|..+.||||+.+.|...
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3588999999999999999998754
No 296
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=45.72 E-value=8.5 Score=25.94 Aligned_cols=23 Identities=4% Similarity=0.021 Sum_probs=18.3
Q ss_pred EeeeeecccCccccchhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~ 56 (79)
-++++.|.+|+||+++-..+-..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999887665543
No 297
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=45.59 E-value=7.8 Score=28.47 Aligned_cols=20 Identities=0% Similarity=0.054 Sum_probs=16.5
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.++|.+|+|||++...|+.
T Consensus 2 IvllGdsgvGKTSLl~~~~~ 21 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVFH 21 (331)
T ss_dssp EEEECSTTSSTTHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 57899999999999875553
No 298
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=45.55 E-value=7.6 Score=26.49 Aligned_cols=20 Identities=0% Similarity=-0.140 Sum_probs=17.5
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+..
T Consensus 32 ~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 56999999999999887765
No 299
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=45.53 E-value=11 Score=26.85 Aligned_cols=47 Identities=9% Similarity=0.008 Sum_probs=30.6
Q ss_pred ceeeeeCCChHHHHHHhh---CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599 13 YIGFANLPNQVFRKAVKK---GFEFTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 13 ~~G~~~lpnq~~~~~~K~---g~~fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
++|...-..+.+.++... ...-+++++|.+|.|||++...+..+...
T Consensus 12 ~~G~~~~g~~v~~d~~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 12 VLGKDRDGGLVLVDIWKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp EEEECTTSCEEEECTTCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCeEEEecccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 355544334444444322 14567899999999999998887765543
No 300
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=45.52 E-value=9.3 Score=26.46 Aligned_cols=23 Identities=0% Similarity=-0.057 Sum_probs=19.4
Q ss_pred eeeeecccCccccchhhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~~ 57 (79)
++++.|.+|+|||++-..+....
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999988776543
No 301
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=45.32 E-value=8 Score=27.25 Aligned_cols=23 Identities=0% Similarity=0.036 Sum_probs=18.8
Q ss_pred eeeeecccCccccchhhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~~ 57 (79)
.++++|..|.||||...++-...
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999988776443
No 302
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=45.29 E-value=11 Score=23.07 Aligned_cols=21 Identities=0% Similarity=-0.085 Sum_probs=17.1
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
++.+.|.+|.||||+-..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 477899999999998776654
No 303
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=45.18 E-value=9.2 Score=25.56 Aligned_cols=21 Identities=0% Similarity=-0.187 Sum_probs=17.6
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+-++|.+|.||||+...+..-
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 457999999999998877654
No 304
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=44.99 E-value=8.2 Score=29.70 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.3
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
.+++++|..|.||||+.+++-.
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998863
No 305
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=44.96 E-value=9.8 Score=27.61 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=21.6
Q ss_pred CceEeeeeecccCccccchhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r 54 (79)
.-.+++.++|..+.|||++.+.|.
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~ 29 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALT 29 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Confidence 456899999999999999999986
No 306
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=44.89 E-value=7.8 Score=27.65 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=17.9
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.++++|.+|.||||...++-.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHH
Confidence 488999999999999877654
No 307
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=44.78 E-value=9.6 Score=24.39 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=18.4
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
..+.++|.+|.||||+-+.+..
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999877654
No 308
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=44.56 E-value=7.8 Score=30.23 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=21.8
Q ss_pred CceEeeeeecccCccccchhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~ 55 (79)
.-.+++.++|..+.||||+++.|..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~ 189 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLY 189 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHH
Confidence 3468999999999999999998864
No 309
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=44.53 E-value=11 Score=27.32 Aligned_cols=36 Identities=8% Similarity=0.167 Sum_probs=20.3
Q ss_pred CCChHHHHHHhhCceEeeeeecccCccccchhhhhh
Q psy5599 19 LPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 19 lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r 54 (79)
++.|...+-.+..-.+.+++.|..+.||+|++-..+
T Consensus 18 id~~l~~~~~~~~~~~klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 18 IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp -------------CEEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHhHHhhcccceEEEEcCCCCCchhHHHHHH
Confidence 444555555555678999999999999999976655
No 310
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=44.49 E-value=9.2 Score=24.60 Aligned_cols=21 Identities=0% Similarity=-0.054 Sum_probs=17.3
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+-+.|.+|.||||+-..+..
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998776543
No 311
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=44.36 E-value=9.5 Score=24.16 Aligned_cols=21 Identities=0% Similarity=0.044 Sum_probs=18.0
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.||||+-+.+..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999887764
No 312
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=44.29 E-value=8.2 Score=26.39 Aligned_cols=20 Identities=5% Similarity=-0.039 Sum_probs=16.7
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+..
T Consensus 38 ~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 56899999999999877643
No 313
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=44.21 E-value=8.8 Score=27.44 Aligned_cols=22 Identities=5% Similarity=0.144 Sum_probs=19.1
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
..+.++|.+|.||||+.+.+-.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998863
No 314
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=44.18 E-value=9.7 Score=28.17 Aligned_cols=24 Identities=4% Similarity=-0.042 Sum_probs=21.1
Q ss_pred CceEeeeeecccCccccchhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r 54 (79)
.-.+++-++|..+.||||+++.|.
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll 38 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIM 38 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHH
Confidence 346899999999999999999884
No 315
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=44.08 E-value=9.8 Score=25.71 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=17.7
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.|||++...+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 378999999999999776654
No 316
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=43.86 E-value=8.4 Score=26.10 Aligned_cols=21 Identities=5% Similarity=0.137 Sum_probs=18.1
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.||||+-..+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877765
No 317
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=43.77 E-value=8.5 Score=26.08 Aligned_cols=20 Identities=0% Similarity=-0.044 Sum_probs=16.9
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+..
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57899999999999887653
No 318
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=43.74 E-value=8.4 Score=26.37 Aligned_cols=19 Identities=0% Similarity=0.041 Sum_probs=16.4
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+.
T Consensus 36 ~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEEECSTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5689999999999987664
No 319
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=43.55 E-value=8.4 Score=26.54 Aligned_cols=22 Identities=5% Similarity=-0.049 Sum_probs=18.0
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.+.+.|..|+|||++...+...
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999998776543
No 320
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=43.47 E-value=11 Score=23.59 Aligned_cols=21 Identities=0% Similarity=-0.010 Sum_probs=17.8
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+-+.|..|.||||..+.+...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999998887653
No 321
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=43.46 E-value=8.8 Score=24.75 Aligned_cols=22 Identities=0% Similarity=-0.198 Sum_probs=18.8
Q ss_pred eeeecccCccccchhhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~~ 57 (79)
+.+.|.+|.|||++...+-...
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6889999999999988877653
No 322
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=43.40 E-value=9.4 Score=24.25 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=17.2
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+-+.|.+|.||||+-..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 577899999999999776543
No 323
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=43.30 E-value=13 Score=23.54 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=18.0
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
..+.+.|..|.||||+-..+..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999776653
No 324
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=43.17 E-value=13 Score=28.78 Aligned_cols=26 Identities=12% Similarity=-0.008 Sum_probs=22.4
Q ss_pred CceEeeeeecccCccccchhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
.-.+++.++|..+.||||+++.|...
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHH
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998643
No 325
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=43.03 E-value=8 Score=27.62 Aligned_cols=21 Identities=5% Similarity=-0.028 Sum_probs=18.0
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
++.++|.+|.||||+.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999887664
No 326
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=42.92 E-value=8.8 Score=26.45 Aligned_cols=19 Identities=0% Similarity=0.081 Sum_probs=16.3
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+.
T Consensus 35 ~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999987654
No 327
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=42.90 E-value=12 Score=26.33 Aligned_cols=24 Identities=0% Similarity=-0.076 Sum_probs=19.0
Q ss_pred CceEeeeeecccCccccchhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r 54 (79)
+--+.+-++|.+|.||||+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345668999999999999876544
No 328
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=42.86 E-value=9 Score=25.78 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=16.2
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+.
T Consensus 37 ~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 37 LAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5689999999999987664
No 329
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=42.80 E-value=12 Score=25.88 Aligned_cols=21 Identities=0% Similarity=-0.053 Sum_probs=17.4
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+++.|.+|+|||++-..+-.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 588999999999988766554
No 330
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=42.56 E-value=8.7 Score=26.16 Aligned_cols=23 Identities=9% Similarity=-0.039 Sum_probs=18.6
Q ss_pred eeeecccCccccchhhhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~~L 58 (79)
+.++|.+|.||||+...+-....
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 67899999999999887665443
No 331
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=42.54 E-value=7.8 Score=28.04 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=21.0
Q ss_pred eEeeeeecccCccccchhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
...+.++|.++.|||++++.|....
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC
Confidence 3457799999999999999988654
No 332
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=42.29 E-value=9.1 Score=26.54 Aligned_cols=20 Identities=0% Similarity=0.024 Sum_probs=16.5
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+-.
T Consensus 40 ~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 46899999999999776653
No 333
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=42.28 E-value=12 Score=23.06 Aligned_cols=20 Identities=0% Similarity=0.011 Sum_probs=17.0
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.+.|..|.||||+-+.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999877654
No 334
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=42.24 E-value=11 Score=23.92 Aligned_cols=21 Identities=5% Similarity=-0.028 Sum_probs=18.0
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.||||+-+.+..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999887764
No 335
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=42.11 E-value=9.3 Score=25.88 Aligned_cols=20 Identities=0% Similarity=0.061 Sum_probs=16.8
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+..
T Consensus 35 ~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 56899999999999877653
No 336
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=42.03 E-value=9.3 Score=26.31 Aligned_cols=20 Identities=5% Similarity=-0.129 Sum_probs=17.0
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+..
T Consensus 49 ~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 49 CALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57999999999999887654
No 337
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=41.98 E-value=11 Score=27.22 Aligned_cols=30 Identities=13% Similarity=-0.010 Sum_probs=24.0
Q ss_pred ceEeeeeecccCccccchhhhhhhhhhcCC
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCRKLAGL 61 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~~L~~~ 61 (79)
..-+++++|.+|.|||+++..+..+.+...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g 81 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRG 81 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 356799999999999999877777666543
No 338
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=41.92 E-value=12 Score=24.65 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=19.4
Q ss_pred eEeeeeecccCccccchhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~ 55 (79)
...+.+.|..|+||||+.+++-.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHH
Confidence 35578899999999999998864
No 339
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=41.89 E-value=12 Score=23.86 Aligned_cols=22 Identities=5% Similarity=-0.090 Sum_probs=17.9
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
+.+-+.|.+|.||||+-..+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999777643
No 340
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=41.88 E-value=9.4 Score=26.27 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=16.8
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.++|.+|.||||+...+..
T Consensus 29 ~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 57899999999999876643
No 341
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=41.75 E-value=10 Score=27.51 Aligned_cols=21 Identities=5% Similarity=0.010 Sum_probs=17.8
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.++|.+|.||||+...+..
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999877654
No 342
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=41.71 E-value=11 Score=24.43 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=17.1
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.++|.+|.||||+...+..
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999998776643
No 343
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=41.67 E-value=9.6 Score=25.67 Aligned_cols=20 Identities=0% Similarity=-0.012 Sum_probs=16.7
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+..
T Consensus 38 ~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46899999999999887653
No 344
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=41.55 E-value=9.6 Score=26.02 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=16.4
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+-
T Consensus 27 ~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 27 CVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6789999999999987664
No 345
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=41.43 E-value=9.7 Score=23.70 Aligned_cols=20 Identities=0% Similarity=0.089 Sum_probs=16.3
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
++.+.|.+|.||+|+-..+-
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47789999999999866553
No 346
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=41.40 E-value=11 Score=23.68 Aligned_cols=20 Identities=0% Similarity=0.046 Sum_probs=17.6
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.++|..|.|||++.+.++-
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998765
No 347
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=41.39 E-value=9.6 Score=26.33 Aligned_cols=20 Identities=0% Similarity=-0.067 Sum_probs=17.4
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+..
T Consensus 49 ~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 56899999999999887765
No 348
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=41.35 E-value=13 Score=25.90 Aligned_cols=23 Identities=0% Similarity=-0.074 Sum_probs=18.6
Q ss_pred EeeeeecccCccccchhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~ 56 (79)
-++++.|.+|+|||++-..+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999887766543
No 349
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=40.93 E-value=9.9 Score=26.39 Aligned_cols=20 Identities=5% Similarity=-0.075 Sum_probs=16.8
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+..
T Consensus 48 ~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57899999999999876653
No 350
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=40.86 E-value=13 Score=23.39 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=18.4
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.+-+.|..|.||||+.+.+...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3778999999999998877654
No 351
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=40.54 E-value=11 Score=27.04 Aligned_cols=20 Identities=5% Similarity=0.087 Sum_probs=17.3
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+..
T Consensus 129 vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhh
Confidence 67999999999999887654
No 352
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=40.52 E-value=13 Score=22.76 Aligned_cols=21 Identities=5% Similarity=0.061 Sum_probs=16.9
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.||||+-..+-.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478899999999998666543
No 353
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=40.42 E-value=14 Score=26.30 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=18.1
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
..+-++|.+|.||||+...+..
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHh
Confidence 4577899999999999877654
No 354
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=40.36 E-value=14 Score=23.40 Aligned_cols=22 Identities=5% Similarity=0.081 Sum_probs=18.1
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
++.+.|.+|.||||+-..+...
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999987766543
No 355
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=40.25 E-value=13 Score=23.07 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=17.3
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|..|.||||+-..+..
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477899999999998776653
No 356
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=40.11 E-value=10 Score=28.62 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=18.1
Q ss_pred EeeeeecccCccccchhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r 54 (79)
-.++++|..|.||||...++-
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999987765
No 357
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=40.08 E-value=10 Score=26.31 Aligned_cols=20 Identities=5% Similarity=0.104 Sum_probs=16.8
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+..
T Consensus 53 ~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEEcCCCCcHHHHHHHHHc
Confidence 57899999999999876653
No 358
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=40.06 E-value=13 Score=28.54 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.5
Q ss_pred ceEeeeeecccCccccchhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~ 55 (79)
-..++.++|..|.||||+.+.|..
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~ 35 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLL 35 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHh
Confidence 457899999999999999999875
No 359
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=39.96 E-value=11 Score=25.93 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=16.2
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+.
T Consensus 34 ~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEEECCSSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5689999999999987654
No 360
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=39.95 E-value=10 Score=26.08 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=16.2
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+.
T Consensus 36 ~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEEECSTTSSHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 5689999999999987654
No 361
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=39.95 E-value=9.8 Score=27.07 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=17.9
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
=.+.++|.+|.||||+...+-.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3478899999999999886653
No 362
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=39.75 E-value=13 Score=23.63 Aligned_cols=24 Identities=0% Similarity=0.007 Sum_probs=18.9
Q ss_pred ceEeeeeecccCccccchhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~ 55 (79)
.-..+.+.|..|.||||+-..+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 334588999999999998776654
No 363
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=39.73 E-value=12 Score=23.30 Aligned_cols=20 Identities=5% Similarity=-0.002 Sum_probs=16.5
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.+.|.+|.||||+-..+..
T Consensus 8 i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999998776654
No 364
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=39.64 E-value=11 Score=26.09 Aligned_cols=20 Identities=0% Similarity=-0.009 Sum_probs=16.8
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+..
T Consensus 44 ~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57899999999999877653
No 365
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=39.63 E-value=14 Score=23.06 Aligned_cols=21 Identities=5% Similarity=0.093 Sum_probs=17.3
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.||||+-..+..
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999998766654
No 366
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=39.41 E-value=14 Score=26.28 Aligned_cols=23 Identities=0% Similarity=-0.071 Sum_probs=18.8
Q ss_pred eEeeeeecccCccccchhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~ 55 (79)
.-++++.|.+|+|||++-..+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999998776654
No 367
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=39.37 E-value=23 Score=23.68 Aligned_cols=31 Identities=16% Similarity=0.040 Sum_probs=21.8
Q ss_pred HHHhhCceEeeeeecccCccccchhhhhhhh
Q psy5599 26 KAVKKGFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 26 ~~~K~g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
..++.+-.-++++.|..|+||+++-..+...
T Consensus 39 ~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 39 HYVKTGSMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp HHHHHTCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3444443334899999999999887766544
No 368
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=39.33 E-value=16 Score=23.46 Aligned_cols=22 Identities=5% Similarity=0.102 Sum_probs=17.5
Q ss_pred eeeecccCccccchhhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~~ 57 (79)
+.+.|.+|.|||++...+....
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999966665443
No 369
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=39.21 E-value=13 Score=28.46 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.6
Q ss_pred ceEeeeeecccCccccchhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r 54 (79)
...++.++|..+.||||+.|.|.
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHH
Confidence 45789999999999999999985
No 370
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=39.03 E-value=14 Score=23.81 Aligned_cols=22 Identities=5% Similarity=-0.004 Sum_probs=18.0
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
+.+-+.|.+|.||||+-+.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999998777643
No 371
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=38.98 E-value=14 Score=28.51 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=22.2
Q ss_pred eeeeecccCccccchhhhhhhhhhcCC
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCRKLAGL 61 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~~L~~~ 61 (79)
.+.++|.+|.|||++.+++-.+.+...
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~~~ 195 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLYKA 195 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 468999999999999999887665543
No 372
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=38.89 E-value=14 Score=26.38 Aligned_cols=23 Identities=4% Similarity=-0.029 Sum_probs=19.1
Q ss_pred EeeeeecccCccccchhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~ 56 (79)
-++++.|.+|+||+++-..+...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999988776443
No 373
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=38.76 E-value=14 Score=24.03 Aligned_cols=21 Identities=0% Similarity=-0.020 Sum_probs=17.3
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|..|.||||+-..+..
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999998776643
No 374
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.71 E-value=11 Score=26.00 Aligned_cols=22 Identities=5% Similarity=0.004 Sum_probs=18.4
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
++.+.|.+|.|||++...+...
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999998776554
No 375
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=38.64 E-value=12 Score=23.99 Aligned_cols=22 Identities=0% Similarity=-0.212 Sum_probs=18.5
Q ss_pred eeeecccCccccchhhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~~ 57 (79)
+-++|.+|-||||+...+....
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6789999999999988876543
No 376
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=38.63 E-value=17 Score=22.39 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=17.8
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
..+-+.|..|.||||+-..+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999998776654
No 377
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=38.55 E-value=14 Score=28.85 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=21.1
Q ss_pred CceEeeeeecccCccccchhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
.-.-+++++|.+|+|||++.+.+...
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 34557899999999999998877654
No 378
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=38.35 E-value=12 Score=24.48 Aligned_cols=22 Identities=0% Similarity=-0.005 Sum_probs=18.1
Q ss_pred eeeecccCccccchhhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~~ 57 (79)
+.++|..|.|||++++.++-..
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5688999999999999876433
No 379
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=38.34 E-value=11 Score=26.27 Aligned_cols=20 Identities=5% Similarity=0.104 Sum_probs=16.7
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+..
T Consensus 50 ~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 57899999999999876653
No 380
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=38.31 E-value=13 Score=29.15 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=21.3
Q ss_pred CceEeeeeecccCccccchhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
+-.-+++++|.+|+|||++.+.+-..
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 45557899999999999998877654
No 381
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=38.16 E-value=13 Score=26.33 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=19.3
Q ss_pred eEeeeeecccCccccchhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~ 55 (79)
-..+.++|..|.||||+.+++-.
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45678899999999999998853
No 382
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=38.14 E-value=15 Score=24.05 Aligned_cols=21 Identities=0% Similarity=0.020 Sum_probs=17.6
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|..|.||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999877754
No 383
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=37.85 E-value=12 Score=26.24 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=16.5
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+..
T Consensus 37 ~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 56899999999999876643
No 384
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=37.76 E-value=12 Score=26.00 Aligned_cols=20 Identities=0% Similarity=0.059 Sum_probs=17.1
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+...+..
T Consensus 33 ~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 33 VIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 57899999999999887654
No 385
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=37.73 E-value=11 Score=24.90 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=18.0
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+-+.|.+|.||||+.+.+...
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 678999999999998877654
No 386
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=37.53 E-value=9.8 Score=24.51 Aligned_cols=21 Identities=5% Similarity=0.113 Sum_probs=17.3
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+.+.|.+|.|||+|.-++...
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999997766543
No 387
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=37.41 E-value=13 Score=27.63 Aligned_cols=25 Identities=8% Similarity=0.001 Sum_probs=21.9
Q ss_pred CceEeeeeecccCccccchhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~ 55 (79)
.-.+++.++|..+.||||+.+.|..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 4578999999999999999998853
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=37.33 E-value=16 Score=23.62 Aligned_cols=21 Identities=0% Similarity=-0.037 Sum_probs=17.5
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
++.+.|..|.||||+-..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999998777654
No 389
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=37.29 E-value=23 Score=23.66 Aligned_cols=30 Identities=7% Similarity=0.120 Sum_probs=21.0
Q ss_pred HHhhCceEeeeeecccCccccchhhhhhhh
Q psy5599 27 AVKKGFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 27 ~~K~g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
.++.+-.-++.+.|..|+||+++...+...
T Consensus 36 ~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 36 IAKDGNMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp HHHSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 334443233899999999999887766544
No 390
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=37.24 E-value=15 Score=25.71 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=17.2
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|..|.|||++.+.+.
T Consensus 27 ~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 27 TAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEECCTTTCSTHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 5699999999999999876
No 391
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=37.13 E-value=15 Score=26.55 Aligned_cols=23 Identities=4% Similarity=0.098 Sum_probs=19.1
Q ss_pred ceEeeeeecccCccccchhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r 54 (79)
-.|-+-+.|.+|.||||+...+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 44668999999999999987664
No 392
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=37.00 E-value=14 Score=23.94 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=17.5
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.||+|+-..+..
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999998777654
No 393
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=36.74 E-value=18 Score=24.62 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=26.8
Q ss_pred cCCceeeeeCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhh
Q psy5599 10 VDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 10 ~~~~~G~~~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
....+|-.++-. .-...++.+-.-++++.|..|+|||++...+...
T Consensus 36 ~~~i~g~~~~~~-~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 36 LDEVTAQDHAVT-VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TTTCCSCCTTHH-HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhhCCHHHHH-HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 334455443322 2233333342234899999999999987766544
No 394
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=36.70 E-value=12 Score=25.30 Aligned_cols=20 Identities=5% Similarity=-0.087 Sum_probs=17.7
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.++|.+|.||||+...+..
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999887775
No 395
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=36.28 E-value=18 Score=22.20 Aligned_cols=20 Identities=5% Similarity=0.142 Sum_probs=16.5
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
++.+.|..|.||||.-..+-
T Consensus 9 ~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58899999999999866554
No 396
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=35.93 E-value=16 Score=27.41 Aligned_cols=25 Identities=8% Similarity=-0.056 Sum_probs=22.2
Q ss_pred eEeeeeecccCccccchhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.+++.++|..+.|||++.+.|....
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~ 43 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIA 43 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred CCEEEEECCCCChHHHHHHHHHCCC
Confidence 6899999999999999999997544
No 397
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=35.91 E-value=15 Score=24.19 Aligned_cols=22 Identities=9% Similarity=-0.037 Sum_probs=18.4
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.+.+.|..|.||||+.+.+...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3788999999999998877654
No 398
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=35.78 E-value=9.5 Score=26.28 Aligned_cols=21 Identities=0% Similarity=0.162 Sum_probs=17.8
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
++++.|..|+|||++-..+-.
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 788999999999988776644
No 399
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=35.76 E-value=15 Score=25.92 Aligned_cols=23 Identities=0% Similarity=0.075 Sum_probs=18.3
Q ss_pred eEeeeeecccCccccchhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~ 55 (79)
.-++++.|.+|+|||++-..+-.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999988766543
No 400
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=35.76 E-value=19 Score=24.03 Aligned_cols=24 Identities=4% Similarity=-0.040 Sum_probs=19.6
Q ss_pred ceEeeeeecccCccccchhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~ 55 (79)
--+.+.+.|-+|.||+|+-..+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999877754
No 401
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=35.69 E-value=17 Score=22.65 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=16.2
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
.+.+.|.+|.||||+-..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 37889999999999866554
No 402
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=35.57 E-value=18 Score=23.34 Aligned_cols=21 Identities=5% Similarity=0.140 Sum_probs=17.3
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|..|.||||+-..+-.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998776643
No 403
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=35.30 E-value=17 Score=22.74 Aligned_cols=22 Identities=5% Similarity=-0.052 Sum_probs=18.1
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
..+-+.|.+|.||||+-..+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999998766654
No 404
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=35.20 E-value=16 Score=24.68 Aligned_cols=21 Identities=0% Similarity=-0.244 Sum_probs=17.1
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.++|.+|.||||+-..+-.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 367899999999999777643
No 405
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=34.99 E-value=11 Score=26.91 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=16.2
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+.
T Consensus 83 vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 83 LALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEEESSSCHHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHH
Confidence 5799999999999987654
No 406
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=34.88 E-value=18 Score=25.34 Aligned_cols=23 Identities=0% Similarity=-0.022 Sum_probs=18.8
Q ss_pred eeeeecccCccccchhhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~~ 57 (79)
.+++.|..|+|||++-..+-...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT
T ss_pred eEEEECCCCccHHHHHHHHHHHc
Confidence 58899999999999877766543
No 407
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=34.81 E-value=14 Score=28.54 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=22.7
Q ss_pred EeeeeecccCccccchhhhhhhhhhcC
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
..+.++|..+.|||++++.|+...+..
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~ 31 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAA 31 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccc
Confidence 457899999999999999999776543
No 408
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=34.77 E-value=13 Score=26.13 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=16.2
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+.++|.+|.||||+...+.
T Consensus 67 ~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp EEEEESTTSSHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 5789999999999987654
No 409
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=34.41 E-value=14 Score=26.01 Aligned_cols=23 Identities=4% Similarity=0.102 Sum_probs=18.2
Q ss_pred eEeeeeecccCccccchhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~ 55 (79)
.-++++.|.+|+|||++-..+-.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999988766543
No 410
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=34.08 E-value=20 Score=25.09 Aligned_cols=26 Identities=4% Similarity=-0.097 Sum_probs=19.9
Q ss_pred eEeeeeecccCccccchhhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~L 58 (79)
.-++.+.|.+|+|||.+-..+.....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999988665554433
No 411
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=33.94 E-value=17 Score=28.72 Aligned_cols=25 Identities=8% Similarity=-0.049 Sum_probs=21.8
Q ss_pred ceEeeeeecccCccccchhhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
-..++.++|..|.||||+.|.|...
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~ 33 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYY 33 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999753
No 412
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=33.85 E-value=17 Score=25.50 Aligned_cols=22 Identities=0% Similarity=-0.010 Sum_probs=18.3
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.+.+.|.+|+||||+...+...
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3788999999999998777654
No 413
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=33.68 E-value=19 Score=24.89 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=18.2
Q ss_pred EeeeeecccCccccchhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~ 56 (79)
..+++.|.+|+|||++-..+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45778899999999887766544
No 414
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=33.54 E-value=15 Score=25.24 Aligned_cols=20 Identities=0% Similarity=-0.004 Sum_probs=17.4
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.+.|.+|.|||++...+-.
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 88999999999999877654
No 415
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=33.53 E-value=16 Score=26.51 Aligned_cols=31 Identities=6% Similarity=0.044 Sum_probs=21.6
Q ss_pred HHHHHhhCceEeeeeecccCccccchhhhhhh
Q psy5599 24 FRKAVKKGFEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 24 ~~~~~K~g~~fn~mvvglsglgkst~~e~~r~ 55 (79)
..++....-. .+.++|.+|.||||+...+..
T Consensus 115 l~~l~~~~~g-~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 115 FKRVSDVPRG-LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp HHHHHHCSSE-EEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHhCCCC-EEEEECCCCCCHHHHHHHHHh
Confidence 3444444222 588999999999999886643
No 416
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=33.30 E-value=15 Score=27.92 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=19.3
Q ss_pred eEeeeeecccCccccchhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~ 55 (79)
...++++|..|.||||....+-.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHH
Confidence 35689999999999999887754
No 417
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.16 E-value=29 Score=24.02 Aligned_cols=31 Identities=13% Similarity=0.007 Sum_probs=21.5
Q ss_pred HHHhhCceEeeeeecccCccccchhhhhhhh
Q psy5599 26 KAVKKGFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 26 ~~~K~g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
..++.|-.-++.+.|.+|.||+++...+-..
T Consensus 39 ~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 39 KFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3444443223788999999999988766544
No 418
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=33.11 E-value=14 Score=28.24 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=17.8
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
++.++|.+|.||||+.+.+..
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999887653
No 419
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=32.86 E-value=17 Score=25.33 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=18.5
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
..+-++|.+|.||||+...+..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999887654
No 420
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=32.81 E-value=23 Score=23.55 Aligned_cols=25 Identities=12% Similarity=-0.025 Sum_probs=19.3
Q ss_pred CceEeeeeecccCccccchhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~ 55 (79)
+-.+.+-+.|-+|.||||+-..+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999998766544
No 421
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=32.71 E-value=16 Score=26.09 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=17.3
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.++++|.+|.||||..-++-.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999998776653
No 422
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=32.33 E-value=18 Score=24.31 Aligned_cols=20 Identities=5% Similarity=0.004 Sum_probs=17.0
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
.+-++|.+|.||||+...+-
T Consensus 29 ~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999977665
No 423
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=32.10 E-value=22 Score=28.00 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=23.4
Q ss_pred EeeeeecccCccccchhhhhhhhhhcCC
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRKLAGL 61 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~L~~~ 61 (79)
-.+++.|.+|.|||++.+++-.+.+...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~ 242 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKS 242 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTC
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 3579999999999999999888776543
No 424
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=32.07 E-value=16 Score=26.23 Aligned_cols=21 Identities=5% Similarity=-0.190 Sum_probs=18.4
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+.++|.+|.||||+...+...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999998887754
No 425
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=32.03 E-value=21 Score=23.83 Aligned_cols=22 Identities=0% Similarity=-0.082 Sum_probs=18.3
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.+.+.|..|.||||+.+.+...
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999998776543
No 426
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=31.77 E-value=20 Score=27.35 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=17.4
Q ss_pred EeeeeecccCccccchhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r 54 (79)
..+.|+|+.|.||||+-..+-
T Consensus 36 ~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999866653
No 427
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=31.74 E-value=14 Score=28.60 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=18.6
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+-++|.+|.||||+.+.+-.-
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSC
T ss_pred EEEECCCCChHHHHHHHHhCC
Confidence 789999999999999988654
No 428
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=31.67 E-value=20 Score=28.23 Aligned_cols=24 Identities=8% Similarity=-0.083 Sum_probs=21.5
Q ss_pred ceEeeeeecccCccccchhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~ 55 (79)
-..++.++|..|.||||+.+.|..
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999974
No 429
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=31.66 E-value=18 Score=27.02 Aligned_cols=23 Identities=4% Similarity=0.046 Sum_probs=18.8
Q ss_pred EeeeeecccCccccchhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~ 56 (79)
..++++|..|.||||...++-..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46888899999999998877643
No 430
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=31.61 E-value=24 Score=23.38 Aligned_cols=21 Identities=10% Similarity=-0.108 Sum_probs=17.6
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+-+.|.+|.||||+...+..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999887654
No 431
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=31.53 E-value=18 Score=27.28 Aligned_cols=21 Identities=5% Similarity=0.033 Sum_probs=17.5
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.++++|.+|.||||+...+..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999876653
No 432
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=31.43 E-value=19 Score=26.50 Aligned_cols=23 Identities=4% Similarity=-0.048 Sum_probs=18.5
Q ss_pred eeeeecccCccccchhhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~~ 57 (79)
.+.+.|.+|+|||++...+....
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999877665443
No 433
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=31.32 E-value=25 Score=23.07 Aligned_cols=20 Identities=5% Similarity=0.150 Sum_probs=16.0
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
.+.++|.+|.|||+.+..+.
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 46899999999998765554
No 434
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=30.95 E-value=23 Score=24.94 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=17.9
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.++++|..|.||||+..++-..
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4677899999999998877643
No 435
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=30.89 E-value=21 Score=25.39 Aligned_cols=22 Identities=0% Similarity=-0.035 Sum_probs=17.6
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
++++.|..|+|||++-..+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999887665543
No 436
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=30.74 E-value=16 Score=28.53 Aligned_cols=17 Identities=6% Similarity=0.012 Sum_probs=14.8
Q ss_pred eeeeecccCccccchhh
Q psy5599 35 TLMVVDLKDVTSNVHYE 51 (79)
Q Consensus 35 n~mvvglsglgkst~~e 51 (79)
+++..|+||.||||+-.
T Consensus 215 ~~~ffGlSGtGKTTLs~ 231 (524)
T 1ii2_A 215 VTVFFGLSGTGKTTLSA 231 (524)
T ss_dssp EEEEECCTTSSHHHHHC
T ss_pred EEEEEccCCcchhhhhh
Confidence 78999999999999743
No 437
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=30.48 E-value=23 Score=26.40 Aligned_cols=37 Identities=8% Similarity=0.131 Sum_probs=21.9
Q ss_pred eCCChHHHHHHhhCceEeeeeecccCccccchhhhhh
Q psy5599 18 NLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 18 ~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r 54 (79)
+++.|...+-.+..-.+.+++.|..+.||+|++-..+
T Consensus 25 ~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 25 KIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp -----------CCTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccceEEEecCCCCchhhHHHHHH
Confidence 3555666665566788999999999999999865554
No 438
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=30.18 E-value=22 Score=24.47 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=18.8
Q ss_pred eEeeeeecccCccccchhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r 54 (79)
.+.+.+.|.+|.||||+-+.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999877665
No 439
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=30.08 E-value=23 Score=23.58 Aligned_cols=22 Identities=5% Similarity=-0.059 Sum_probs=18.0
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
++++.|..|+||+++...+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 4899999999999887766544
No 440
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=29.93 E-value=18 Score=24.87 Aligned_cols=20 Identities=5% Similarity=0.049 Sum_probs=16.6
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
++.++|.+|.||||+-..+-
T Consensus 50 ~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999866553
No 441
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=29.79 E-value=25 Score=23.00 Aligned_cols=22 Identities=0% Similarity=-0.019 Sum_probs=17.8
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
.++.+.|..|.||||+-..+-.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999998766543
No 442
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=29.63 E-value=17 Score=27.08 Aligned_cols=21 Identities=5% Similarity=0.012 Sum_probs=18.2
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+-++|.+|.||||+++.+...
T Consensus 160 VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 160 VGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCcHHHHHHHHHcC
Confidence 568999999999999988654
No 443
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=29.42 E-value=25 Score=22.76 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=17.1
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|..|.||||+-..+-.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999998766643
No 444
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=29.30 E-value=27 Score=25.35 Aligned_cols=22 Identities=5% Similarity=0.191 Sum_probs=18.8
Q ss_pred eEeeeeecccCccccchhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r 54 (79)
...+++.|..|.||+|+...++
T Consensus 9 ~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 9 IRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceeEEEECCCCCcHHHHHHHHH
Confidence 4569999999999999977765
No 445
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=29.00 E-value=18 Score=24.68 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=26.7
Q ss_pred ccCCceeeeeCCChHHHHHHhhCce-EeeeeecccCccccchhhhhhhh
Q psy5599 9 EVDGYIGFANLPNQVFRKAVKKGFE-FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 9 ~~~~~~G~~~lpnq~~~~~~K~g~~-fn~mvvglsglgkst~~e~~r~~ 56 (79)
++...+|-.++- +.....++.+-. -.+.+.|.+|+|||++...+...
T Consensus 24 ~~~~ivg~~~~~-~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 24 TIDECILPAFDK-ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp STTTSCCCHHHH-HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred CHHHHhCcHHHH-HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 334445544432 223344444432 23566788999999998777543
No 446
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=28.83 E-value=19 Score=28.83 Aligned_cols=27 Identities=11% Similarity=0.024 Sum_probs=21.5
Q ss_pred CceEeeeeecccCccccchhhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
+-.-+++++|.+|+|||++.+.+....
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 444468999999999999988877654
No 447
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=28.82 E-value=25 Score=26.90 Aligned_cols=20 Identities=5% Similarity=-0.115 Sum_probs=17.0
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+.+.+..
T Consensus 373 ~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 373 TALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEEECCTTSSSTHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57899999999999887653
No 448
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=28.79 E-value=26 Score=27.32 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=22.6
Q ss_pred EeeeeecccCccccchhhhhhhhhhc
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRKLA 59 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~L~ 59 (79)
.++.++|..+.|||++.+.|+.....
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~ 31 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVA 31 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCc
Confidence 46889999999999999999877664
No 449
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=28.45 E-value=33 Score=24.76 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=19.9
Q ss_pred CceEeeeeecccCccccchhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r 54 (79)
...+++++.|++|+||+++...+.
T Consensus 158 ~~~~~vli~Ge~GtGK~~lAr~ih 181 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVARLIH 181 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCeEEecCCCcCHHHHHHHHH
Confidence 567888999999999998766554
No 450
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=28.40 E-value=29 Score=27.11 Aligned_cols=23 Identities=4% Similarity=-0.068 Sum_probs=16.8
Q ss_pred eEeeeeecccCccccchhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~ 55 (79)
..|+.++|..|.||||+.+.|..
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~ 26 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQ 26 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 451
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=28.37 E-value=23 Score=27.08 Aligned_cols=22 Identities=0% Similarity=0.132 Sum_probs=17.8
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
-++++.|..|+|||++-..+-.
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGG
T ss_pred CeeEeecCchHHHHHHHHHHHH
Confidence 3789999999999988665543
No 452
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=28.35 E-value=19 Score=28.24 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=14.9
Q ss_pred eeeeecccCccccchhh
Q psy5599 35 TLMVVDLKDVTSNVHYE 51 (79)
Q Consensus 35 n~mvvglsglgkst~~e 51 (79)
+++..|+||.||||+-.
T Consensus 237 ~~~ffGlSGtGKTTLs~ 253 (532)
T 1ytm_A 237 TAIFFGLSGTGKTTLST 253 (532)
T ss_dssp EEEEECCTTSSHHHHHC
T ss_pred EEEEEecCCCCHHHHhh
Confidence 78999999999999743
No 453
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=27.97 E-value=25 Score=25.98 Aligned_cols=23 Identities=0% Similarity=-0.200 Sum_probs=18.8
Q ss_pred eeeecccCccccchhhhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~~L 58 (79)
+.++|.+|.||||+...+....+
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEcCCCCChHHHHHHHHHHhc
Confidence 78999999999999887764433
No 454
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=27.89 E-value=37 Score=25.99 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=22.8
Q ss_pred EeeeeecccCccccchhhhhhhhhhcC
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCRKLAG 60 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~~L~~ 60 (79)
.++.++|..+.|||++.+.|+......
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~ 31 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRSTKVAS 31 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHHHHHSB
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCcc
Confidence 457899999999999999999876543
No 455
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=27.65 E-value=17 Score=26.80 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=21.0
Q ss_pred eEeeeeecccCccccchhhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
..++-++|...+||||++|.+-...
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~ 96 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE 96 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999987544
No 456
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=27.49 E-value=19 Score=24.57 Aligned_cols=19 Identities=0% Similarity=0.036 Sum_probs=15.0
Q ss_pred eeeeecccCccccchhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENF 53 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~ 53 (79)
-+.+.|.||.||||+--.+
T Consensus 18 gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLAL 36 (181)
T ss_dssp EEEEEESSSSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4678999999999884433
No 457
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=27.46 E-value=37 Score=27.43 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=23.1
Q ss_pred CceEeeeeecccCccccchhhhhhhh
Q psy5599 31 GFEFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 31 g~~fn~mvvglsglgkst~~e~~r~~ 56 (79)
....|+.++|..|.|||++.+.|...
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999998764
No 458
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=27.35 E-value=26 Score=25.43 Aligned_cols=22 Identities=0% Similarity=-0.050 Sum_probs=17.8
Q ss_pred EeeeeecccCccccchhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~ 55 (79)
-.+.+.|.||.|||++-..+..
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHh
Confidence 3588999999999988666654
No 459
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=27.26 E-value=22 Score=26.48 Aligned_cols=20 Identities=5% Similarity=-0.117 Sum_probs=17.5
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.++|.+|.||||+...+..
T Consensus 170 i~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 170 ILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999887664
No 460
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=27.25 E-value=23 Score=25.66 Aligned_cols=20 Identities=0% Similarity=-0.001 Sum_probs=16.9
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.++|.+|.|||++.+.+.-
T Consensus 29 ~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 29 TSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 56899999999999887653
No 461
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=27.20 E-value=11 Score=26.76 Aligned_cols=19 Identities=0% Similarity=-0.022 Sum_probs=16.6
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+.++|.+|.||||+.+.+.
T Consensus 63 ~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 63 CAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEESHHHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999998763
No 462
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=26.96 E-value=24 Score=25.37 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=16.0
Q ss_pred eeecccCccccchhhhhh
Q psy5599 37 MVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 37 mvvglsglgkst~~e~~r 54 (79)
.++|.+|-||||++|...
T Consensus 27 ~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 27 VVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 389999999999998765
No 463
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=26.92 E-value=22 Score=25.79 Aligned_cols=20 Identities=5% Similarity=0.106 Sum_probs=18.9
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
++-++|..+.|||++.+.|.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999887
No 464
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=26.58 E-value=24 Score=27.67 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=20.7
Q ss_pred eEeeeeecccCccccchhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~ 56 (79)
..++.++|.+|.||||+.+.|...
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCChHHHHHHHHHHh
Confidence 457889999999999999998743
No 465
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=26.53 E-value=29 Score=26.24 Aligned_cols=23 Identities=0% Similarity=-0.091 Sum_probs=18.3
Q ss_pred eEeeeeecccCccccchhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~ 55 (79)
.-++++.|.+|+||+++-..+..
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHH
Confidence 34689999999999988776643
No 466
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.30 E-value=29 Score=25.91 Aligned_cols=23 Identities=4% Similarity=-0.099 Sum_probs=18.5
Q ss_pred EeeeeecccCccccchhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~ 56 (79)
-.+++.|..|+|||++...+...
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999987766543
No 467
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=26.25 E-value=22 Score=27.05 Aligned_cols=20 Identities=5% Similarity=-0.085 Sum_probs=17.0
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+.+.+..
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 67899999999999887653
No 468
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=26.24 E-value=24 Score=26.10 Aligned_cols=19 Identities=5% Similarity=-0.024 Sum_probs=15.8
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|-||||+...+-
T Consensus 57 ~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHHh
Confidence 4689999999999976554
No 469
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=25.87 E-value=27 Score=26.76 Aligned_cols=19 Identities=5% Similarity=-0.038 Sum_probs=16.1
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+.
T Consensus 384 ~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 384 VALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp EEEECCTTSSTTHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 5699999999999977654
No 470
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=25.84 E-value=34 Score=26.80 Aligned_cols=24 Identities=4% Similarity=-0.063 Sum_probs=19.1
Q ss_pred eEeeeeecccCccccchhhhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r~~ 56 (79)
..|+.++|..|.||||+.+.|...
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~ 29 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEY 29 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 568899999999999999998753
No 471
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=25.84 E-value=23 Score=27.98 Aligned_cols=18 Identities=6% Similarity=-0.071 Sum_probs=15.1
Q ss_pred EeeeeecccCccccchhh
Q psy5599 34 FTLMVVDLKDVTSNVHYE 51 (79)
Q Consensus 34 fn~mvvglsglgkst~~e 51 (79)
-++++.|+||.||||+-.
T Consensus 242 ~~~lffGlSGtGKTTLs~ 259 (540)
T 2olr_A 242 DVAVFFGLSGTGKTTLST 259 (540)
T ss_dssp CEEEEECSTTSSHHHHHC
T ss_pred CEEEEEccCCCCHHHHhc
Confidence 368999999999999743
No 472
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=25.69 E-value=24 Score=26.89 Aligned_cols=20 Identities=10% Similarity=0.026 Sum_probs=17.0
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+-++|.+|.||||+.+.+..
T Consensus 372 ~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57899999999999887653
No 473
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=25.50 E-value=26 Score=25.50 Aligned_cols=20 Identities=5% Similarity=-0.187 Sum_probs=17.8
Q ss_pred eeeecccCccccchhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~ 55 (79)
+.++|.+|.|||++.|...-
T Consensus 29 ~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 29 TGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHH
Confidence 67899999999999998764
No 474
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=25.27 E-value=30 Score=21.63 Aligned_cols=20 Identities=0% Similarity=-0.125 Sum_probs=16.1
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
.+.+.|.+|.||+|+-..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46789999999998866554
No 475
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=24.97 E-value=33 Score=25.24 Aligned_cols=23 Identities=0% Similarity=-0.062 Sum_probs=18.8
Q ss_pred EeeeeecccCccccchhhhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r~~ 56 (79)
-.+++.|.+|+|||++-..+...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999987766654
No 476
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=24.78 E-value=18 Score=28.03 Aligned_cols=22 Identities=0% Similarity=0.138 Sum_probs=17.4
Q ss_pred eEeeeeecccCccccchhhhhh
Q psy5599 33 EFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 33 ~fn~mvvglsglgkst~~e~~r 54 (79)
..+++++|..|+|||++-..+-
T Consensus 327 ~~~vLL~GppGtGKT~LAr~la 348 (595)
T 3f9v_A 327 DIHILIIGDPGTAKSQMLQFIS 348 (595)
T ss_dssp SCCEEEEESSCCTHHHHHHSSS
T ss_pred CcceEEECCCchHHHHHHHHHH
Confidence 3489999999999998755443
No 477
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=24.72 E-value=27 Score=24.43 Aligned_cols=22 Identities=0% Similarity=-0.073 Sum_probs=17.8
Q ss_pred eeeecccCccccchhhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~~ 57 (79)
+.+.|.+|.|||+|.-++-...
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999977765443
No 478
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=24.67 E-value=26 Score=25.58 Aligned_cols=19 Identities=0% Similarity=-0.102 Sum_probs=16.0
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+-
T Consensus 44 ~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 4689999999999987654
No 479
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=24.66 E-value=25 Score=26.90 Aligned_cols=21 Identities=0% Similarity=0.018 Sum_probs=17.8
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|.|||++...+-.
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHhc
Confidence 689999999999999776643
No 480
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=24.61 E-value=27 Score=23.94 Aligned_cols=21 Identities=5% Similarity=-0.024 Sum_probs=17.0
Q ss_pred EeeeeecccCccccchhhhhh
Q psy5599 34 FTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 34 fn~mvvglsglgkst~~e~~r 54 (79)
+.+.+.|.+|.||+|+-+.+-
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457889999999998866553
No 481
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=24.51 E-value=32 Score=22.89 Aligned_cols=21 Identities=5% Similarity=-0.016 Sum_probs=17.8
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+.+.|.+|.||+|+.+.+...
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999998877643
No 482
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=24.44 E-value=29 Score=26.34 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=17.2
Q ss_pred eeeeecccCccccchhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~ 55 (79)
.+.+.|.+|+|||++-..+-.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999998766543
No 483
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=24.35 E-value=27 Score=25.55 Aligned_cols=19 Identities=0% Similarity=-0.017 Sum_probs=16.0
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|-||||+...+-
T Consensus 32 ~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHh
Confidence 5689999999999977654
No 484
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=24.24 E-value=24 Score=26.89 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=15.8
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+.
T Consensus 370 ~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp EEEECSTTSSHHHHHTTTT
T ss_pred EEEECCCCChHHHHHHHHh
Confidence 5689999999999976554
No 485
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=24.18 E-value=27 Score=26.15 Aligned_cols=23 Identities=4% Similarity=0.060 Sum_probs=19.4
Q ss_pred eeeecccCccccchhhhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~~L 58 (79)
+.+.|.+|.||||+...+.....
T Consensus 284 ~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 284 ILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 78899999999999988876543
No 486
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=24.09 E-value=28 Score=24.80 Aligned_cols=23 Identities=4% Similarity=0.075 Sum_probs=18.6
Q ss_pred eeeecccCccccchhhhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCRKL 58 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~~L 58 (79)
+.+.|+.|-|||++.|...-..+
T Consensus 28 ~vi~G~NGaGKT~ileAI~~~l~ 50 (371)
T 3auy_A 28 VAIIGENGSGKSSIFEAVFFALF 50 (371)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 56899999999999998765333
No 487
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=23.92 E-value=28 Score=25.50 Aligned_cols=19 Identities=0% Similarity=0.085 Sum_probs=16.0
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+-
T Consensus 32 ~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHH
Confidence 5689999999999977654
No 488
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=23.66 E-value=31 Score=24.04 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=17.5
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.+.++|.+|.||||+.-++-..
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4677899999999987776643
No 489
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=23.40 E-value=30 Score=25.62 Aligned_cols=20 Identities=5% Similarity=-0.044 Sum_probs=16.6
Q ss_pred eeeeecccCccccchhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r 54 (79)
.+.++|..|+|||++-..+.
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 37799999999999876654
No 490
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=23.40 E-value=29 Score=25.37 Aligned_cols=19 Identities=0% Similarity=-0.027 Sum_probs=15.9
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|-||||+...+-
T Consensus 32 ~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHHH
Confidence 4689999999999977654
No 491
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=23.28 E-value=53 Score=24.34 Aligned_cols=26 Identities=8% Similarity=0.169 Sum_probs=20.4
Q ss_pred hhCceEeeeeecccCccccchhhhhh
Q psy5599 29 KKGFEFTLMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 29 K~g~~fn~mvvglsglgkst~~e~~r 54 (79)
+.|-..++.+.|.+|.||+|+-..+.
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHH
Confidence 34666789999999999999876443
No 492
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=22.95 E-value=30 Score=26.54 Aligned_cols=19 Identities=5% Similarity=-0.022 Sum_probs=16.2
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+.+.+.
T Consensus 372 ~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 372 VAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp EEEECSSSSSHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5699999999999977654
No 493
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=22.86 E-value=31 Score=27.29 Aligned_cols=24 Identities=8% Similarity=-0.101 Sum_probs=21.1
Q ss_pred ceEeeeeecccCccccchhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~ 55 (79)
-..|+.++|..|.||||+.+.|..
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999864
No 494
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=22.77 E-value=26 Score=25.44 Aligned_cols=15 Identities=0% Similarity=0.073 Sum_probs=13.2
Q ss_pred eeeeecccCccccch
Q psy5599 35 TLMVVDLKDVTSNVH 49 (79)
Q Consensus 35 n~mvvglsglgkst~ 49 (79)
-+++.|.||.|||++
T Consensus 149 gvli~G~sG~GKStl 163 (312)
T 1knx_A 149 GVLLTGRSGIGKSEC 163 (312)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 477899999999987
No 495
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=22.74 E-value=45 Score=21.75 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=19.2
Q ss_pred ceEeeeeecccCccccchhhhhhh
Q psy5599 32 FEFTLMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 32 ~~fn~mvvglsglgkst~~e~~r~ 55 (79)
-.+.+-+.|-+|.||||.-+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999998766654
No 496
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=22.61 E-value=29 Score=24.94 Aligned_cols=28 Identities=7% Similarity=-0.046 Sum_probs=22.3
Q ss_pred hCceEeeeeecccCccccchhhhhhhhh
Q psy5599 30 KGFEFTLMVVDLKDVTSNVHYENFRCRK 57 (79)
Q Consensus 30 ~g~~fn~mvvglsglgkst~~e~~r~~~ 57 (79)
.+---++.+.|..|+|||+.......+.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3555678999999999999888776554
No 497
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=22.50 E-value=36 Score=28.88 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=19.9
Q ss_pred CceEe------eeeecccCccccchhhhhhh
Q psy5599 31 GFEFT------LMVVDLKDVTSNVHYENFRC 55 (79)
Q Consensus 31 g~~fn------~mvvglsglgkst~~e~~r~ 55 (79)
++.|+ +-+||.+|-||||+...++.
T Consensus 1097 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1097 GLSFSVEPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEEECTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred ceeEEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 55555 46999999999999887763
No 498
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=22.49 E-value=31 Score=22.93 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=17.8
Q ss_pred eeeecccCccccchhhhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r~~ 56 (79)
+++.|-++.|||+|=+.+-..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 688999999999998877643
No 499
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=22.44 E-value=33 Score=25.68 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=17.6
Q ss_pred eeeeecccCccccchhhhhhhh
Q psy5599 35 TLMVVDLKDVTSNVHYENFRCR 56 (79)
Q Consensus 35 n~mvvglsglgkst~~e~~r~~ 56 (79)
.++++|.+|.||||+..++-..
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4778899999999987776543
No 500
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=22.38 E-value=30 Score=25.59 Aligned_cols=19 Identities=5% Similarity=0.032 Sum_probs=16.2
Q ss_pred eeeecccCccccchhhhhh
Q psy5599 36 LMVVDLKDVTSNVHYENFR 54 (79)
Q Consensus 36 ~mvvglsglgkst~~e~~r 54 (79)
+-++|.+|.||||+...+-
T Consensus 50 ~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHh
Confidence 5689999999999987665
Done!