RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5599
(79 letters)
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 58.7 bits (141), Expect = 4e-12
Identities = 25/33 (75%), Positives = 31/33 (93%)
Query: 7 PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
K ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct: 5 QKNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 37
Score = 40.2 bits (93), Expect = 1e-05
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 39 VDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNK 72
DLKDVT+NVHYEN+R RKLA + +G NK
Sbjct: 276 QDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNK 309
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 57.1 bits (137), Expect = 2e-11
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 1 MPERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVD 40
+ E + G++GF +LP+Q+ K+V +GF F ++ V
Sbjct: 10 VGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVG 49
Score = 37.8 bits (87), Expect = 8e-05
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 40 DLKDVTSNVHYENFRCRKLAGLGTDG 65
DL++ T HYE +R KL +G
Sbjct: 285 DLREQTHTRHYELYRRCKLEEMGFKD 310
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 52.2 bits (124), Expect = 8e-10
Identities = 28/39 (71%), Positives = 31/39 (79%)
Query: 2 PERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVD 40
P + I E GY+GFANLPNQV RK+VKKGFEFTLMVV
Sbjct: 6 PTQFINPETPGYVGFANLPNQVHRKSVKKGFEFTLMVVG 44
Score = 41.0 bits (95), Expect = 7e-06
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 40 DLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKWK 74
DL++VT ++HYENFR +L G + +NK +
Sbjct: 286 DLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQ 320
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 47.9 bits (113), Expect = 2e-08
Identities = 20/23 (86%), Positives = 22/23 (95%)
Query: 17 ANLPNQVFRKAVKKGFEFTLMVV 39
+NLPNQV RK+VKKGFEFTLMVV
Sbjct: 2 SNLPNQVHRKSVKKGFEFTLMVV 24
Score = 44.4 bits (104), Expect = 3e-07
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 40 DLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNK 72
DL++VT ++HYENFR +L G + +NK
Sbjct: 267 DLQEVTQDLHYENFRSERLKRGGRKVENEDMNK 299
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 43.2 bits (101), Expect = 9e-07
Identities = 17/21 (80%), Positives = 19/21 (90%)
Query: 40 DLKDVTSNVHYENFRCRKLAG 60
DLKDVT+NVHYEN+R RKLA
Sbjct: 254 DLKDVTNNVHYENYRSRKLAA 274
Score = 30.1 bits (67), Expect = 0.048
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 28 VKKGFEFTLMVV 39
+ GFEFTLMVV
Sbjct: 3 LGSGFEFTLMVV 14
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding,
coenzyme A biosynthesis, cytoplasm, metal-binding,
nucleotide-binding, potassium; HET: PAU; 1.51A
{Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB:
3bf1_A* 3bf3_A* 2gtd_A
Length = 249
Score = 26.8 bits (60), Expect = 0.58
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 21 NQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLN 71
N V + +K F + + V K+ + +N +G D R+ N
Sbjct: 70 NTVIERFSQKYFHISPIWVKAKNGCVKWNVKNPS-----EVGAD---RVAN 112
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 25.5 bits (56), Expect = 1.9
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 14 IGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYEN 52
I L + + K G F + D +N +
Sbjct: 71 IAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGD 109
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics,
joint CEN structural genomics, JCSG, protein structure
initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus
aureus subsp}
Length = 396
Score = 24.6 bits (54), Expect = 4.1
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 1 MPERKIPKEVDGYIGF 16
M ++ + IG
Sbjct: 235 MKLGQVDEITTANIGK 250
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 4.5
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 22 QVFRKAVKKGFEFTLMVVDLKDVTSNV 48
VF A F+ D++D+ ++
Sbjct: 23 SVFEDAFVDNFDCK----DVQDMPKSI 45
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family
M20/M25/M structural genomics, joint center for
structural genomics; 2.04A {Bacillus cereus atcc 10987}
Length = 373
Score = 23.4 bits (51), Expect = 9.5
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 1 MPERKIPKEVDGYIGFANLPNQV 23
MP +I E IG Q
Sbjct: 215 MPLGRIDSETTANIGRFEGGTQT 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.427
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,271,259
Number of extensions: 62322
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 18
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)