RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5599
         (79 letters)



>d2v7qi1 a.137.8.1 (I:1-47) Epsilon subunit of mitochondrial
          F1F0-ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
          Length = 47

 Score = 21.7 bits (46), Expect = 6.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 13 YIGFANLPNQVFRKAVKKGF 32
          YI ++ +  +  R A+K  F
Sbjct: 11 YIRYSQICAKAVRDALKTEF 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 313,608
Number of extensions: 12102
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)