Query psy5600
Match_columns 413
No_of_seqs 322 out of 2517
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 21:42:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2804|consensus 100.0 6.6E-61 1.4E-65 466.1 17.6 257 45-407 60-320 (348)
2 KOG2803|consensus 100.0 5.4E-60 1.2E-64 461.9 17.5 256 45-366 5-292 (358)
3 PLN02406 ethanolamine-phosphat 100.0 2.8E-58 6.1E-63 470.6 24.5 271 35-370 41-349 (418)
4 PTZ00308 ethanolamine-phosphat 100.0 6.5E-55 1.4E-59 439.7 24.3 290 43-396 6-321 (353)
5 PLN02413 choline-phosphate cyt 100.0 7E-49 1.5E-53 382.5 19.9 245 44-396 23-276 (294)
6 cd02174 CCT CTP:phosphocholine 100.0 3.5E-38 7.6E-43 284.1 17.1 150 47-244 1-150 (150)
7 cd02173 ECT CTP:phosphoethanol 100.0 3.4E-36 7.4E-41 271.6 16.6 148 47-244 1-152 (152)
8 PLN02406 ethanolamine-phosphat 100.0 1.7E-35 3.8E-40 303.1 14.9 159 39-247 242-405 (418)
9 PTZ00308 ethanolamine-phosphat 100.0 3.8E-34 8.2E-39 289.1 15.6 151 45-245 189-343 (353)
10 COG0615 TagD Cytidylyltransfer 100.0 1.1E-33 2.4E-38 251.7 12.2 132 48-231 1-139 (140)
11 KOG2803|consensus 100.0 4E-29 8.7E-34 245.3 11.0 158 42-250 192-351 (358)
12 COG0615 TagD Cytidylyltransfer 99.9 2.3E-26 5E-31 204.9 8.8 120 262-397 2-126 (140)
13 cd02174 CCT CTP:phosphocholine 99.9 3.4E-25 7.3E-30 199.8 8.3 123 261-396 2-129 (150)
14 cd02172 RfaE_N N-terminal doma 99.9 5.4E-24 1.2E-28 190.2 15.5 137 47-234 3-144 (144)
15 cd02170 cytidylyltransferase c 99.9 9.9E-24 2.1E-28 184.8 15.2 133 48-231 1-135 (136)
16 PLN02413 choline-phosphate cyt 99.9 2.3E-24 4.9E-29 211.0 8.0 126 258-396 24-156 (294)
17 TIGR02199 rfaE_dom_II rfaE bif 99.9 6E-23 1.3E-27 183.3 13.5 133 46-231 9-144 (144)
18 TIGR01518 g3p_cytidyltrns glyc 99.9 3.7E-22 8E-27 173.4 12.6 123 51-229 1-125 (125)
19 cd02173 ECT CTP:phosphoethanol 99.9 5.6E-23 1.2E-27 185.7 7.8 97 261-371 2-101 (152)
20 COG2870 RfaE ADP-heptose synth 99.9 3.9E-22 8.5E-27 202.2 11.9 132 47-231 331-465 (467)
21 cd02171 G3P_Cytidylyltransfera 99.9 3.5E-21 7.6E-26 167.3 14.5 128 48-231 1-128 (129)
22 PRK11316 bifunctional heptose 99.9 1.9E-21 4.1E-26 201.2 15.0 135 44-230 336-472 (473)
23 COG2870 RfaE ADP-heptose synth 99.8 1.4E-20 3.1E-25 190.9 8.9 142 205-371 287-430 (467)
24 TIGR01518 g3p_cytidyltrns glyc 99.7 1.9E-18 4.2E-23 150.1 6.8 95 264-372 1-96 (125)
25 TIGR02199 rfaE_dom_II rfaE bif 99.7 1.8E-18 4E-23 154.5 6.4 123 260-396 10-136 (144)
26 cd02170 cytidylyltransferase c 99.7 5E-18 1.1E-22 148.8 8.6 97 261-371 1-97 (136)
27 PRK00777 phosphopantetheine ad 99.7 1.3E-17 2.9E-22 150.9 9.1 138 48-234 1-147 (153)
28 cd02172 RfaE_N N-terminal doma 99.7 1E-17 2.2E-22 149.8 7.6 122 260-396 3-133 (144)
29 PRK11316 bifunctional heptose 99.7 1.1E-17 2.5E-22 173.1 7.7 123 260-396 339-465 (473)
30 KOG2804|consensus 99.7 2.2E-17 4.8E-22 162.2 7.7 114 258-379 60-174 (348)
31 cd02171 G3P_Cytidylyltransfera 99.7 9.6E-17 2.1E-21 139.5 8.0 113 261-390 1-114 (129)
32 PF01467 CTP_transf_2: Cytidyl 99.6 2E-15 4.3E-20 130.7 9.6 126 52-228 1-157 (157)
33 PRK00777 phosphopantetheine ad 99.6 6.5E-16 1.4E-20 139.9 6.3 102 262-380 2-111 (153)
34 PRK00168 coaD phosphopantethei 99.6 9.2E-15 2E-19 132.6 12.9 80 48-134 1-81 (159)
35 COG0669 CoaD Phosphopantethein 99.6 6.7E-15 1.5E-19 133.4 9.4 81 47-134 1-82 (159)
36 PRK01170 phosphopantetheine ad 99.5 1.2E-14 2.5E-19 145.9 7.3 97 263-372 2-99 (322)
37 TIGR01527 arch_NMN_Atrans nico 99.5 1.4E-13 2.9E-18 126.5 13.5 128 50-233 1-137 (165)
38 TIGR00125 cyt_tran_rel cytidyl 99.5 2.6E-14 5.6E-19 109.9 7.1 65 50-116 1-65 (66)
39 PRK01170 phosphopantetheine ad 99.5 3.9E-14 8.4E-19 142.2 9.7 128 50-233 2-143 (322)
40 cd02163 PPAT Phosphopantethein 99.5 2E-13 4.4E-18 123.1 12.1 78 50-134 1-79 (153)
41 PRK13964 coaD phosphopantethei 99.5 2.2E-13 4.8E-18 122.1 10.4 80 48-134 1-82 (140)
42 cd02039 cytidylyltransferase_l 99.4 5.7E-13 1.2E-17 114.8 9.7 68 50-119 1-69 (143)
43 cd02064 FAD_synthetase_N FAD s 99.4 1.4E-12 3E-17 120.2 12.4 137 51-233 2-159 (180)
44 cd02166 NMNAT_Archaea Nicotina 99.4 4.5E-12 9.8E-17 115.6 12.0 127 50-231 1-137 (163)
45 TIGR00125 cyt_tran_rel cytidyl 99.4 9.8E-13 2.1E-17 101.1 6.5 58 263-322 1-58 (66)
46 TIGR01510 coaD_prev_kdtB pante 99.3 7.7E-12 1.7E-16 113.0 11.6 78 50-134 1-79 (155)
47 PRK05627 bifunctional riboflav 99.3 2.2E-11 4.7E-16 121.7 13.2 135 50-231 15-172 (305)
48 cd02164 PPAT_CoAS phosphopante 99.1 1.2E-10 2.6E-15 104.7 7.1 60 50-110 1-61 (143)
49 PRK00168 coaD phosphopantethei 99.1 1.7E-10 3.7E-15 104.8 6.5 88 261-366 1-89 (159)
50 PRK01153 nicotinamide-nucleoti 99.1 1.2E-09 2.6E-14 101.1 12.2 59 50-112 2-61 (174)
51 cd02039 cytidylyltransferase_l 99.1 2E-10 4.3E-15 99.0 6.3 100 263-375 1-110 (143)
52 COG1019 Predicted nucleotidylt 99.0 3.1E-10 6.8E-15 102.8 6.6 61 260-322 4-64 (158)
53 TIGR01527 arch_NMN_Atrans nico 99.0 2.4E-10 5.2E-15 105.1 5.9 105 264-388 2-117 (165)
54 PF01467 CTP_transf_2: Cytidyl 99.0 3.2E-10 7E-15 98.1 6.4 55 265-322 1-56 (157)
55 PRK05379 bifunctional nicotina 99.0 1.5E-09 3.2E-14 109.8 11.8 142 46-233 4-151 (340)
56 cd02168 NMNAT_Nudix Nicotinami 99.0 7.8E-10 1.7E-14 102.9 8.1 57 51-111 2-58 (181)
57 cd02165 NMNAT Nicotinamide/nic 99.0 8E-09 1.7E-13 95.8 14.0 82 50-134 1-89 (192)
58 PRK07143 hypothetical protein; 99.0 1E-08 2.2E-13 101.6 15.4 135 48-231 15-161 (279)
59 PRK08887 nicotinic acid mononu 99.0 9.4E-09 2E-13 94.9 13.7 65 48-119 2-69 (174)
60 PRK00071 nadD nicotinic acid m 99.0 1.7E-08 3.6E-13 94.7 15.1 85 47-134 3-95 (203)
61 cd02164 PPAT_CoAS phosphopante 98.9 1E-09 2.2E-14 98.7 5.9 59 263-322 1-60 (143)
62 cd02064 FAD_synthetase_N FAD s 98.9 1.3E-09 2.8E-14 100.6 4.8 95 264-371 2-112 (180)
63 COG1019 Predicted nucleotidylt 98.9 2.2E-09 4.8E-14 97.3 5.9 80 46-127 3-88 (158)
64 cd02167 NMNAT_NadR Nicotinamid 98.9 5.3E-09 1.1E-13 95.2 7.8 65 51-119 2-67 (158)
65 cd02163 PPAT Phosphopantethein 98.9 5.9E-09 1.3E-13 94.1 7.5 87 263-367 1-88 (153)
66 smart00764 Citrate_ly_lig Citr 98.8 3.2E-08 6.9E-13 92.3 12.3 150 55-231 6-164 (182)
67 cd02166 NMNAT_Archaea Nicotina 98.8 3.8E-09 8.1E-14 96.5 5.7 108 264-390 2-121 (163)
68 TIGR00482 nicotinate (nicotina 98.8 8.3E-08 1.8E-12 89.4 13.4 79 53-134 2-88 (193)
69 COG1057 NadD Nicotinic acid mo 98.8 3E-08 6.4E-13 93.8 10.5 68 46-116 1-70 (197)
70 cd02156 nt_trans nucleotidyl t 98.8 7.8E-09 1.7E-13 87.1 5.7 58 50-111 1-58 (105)
71 PRK07152 nadD putative nicotin 98.8 5.6E-08 1.2E-12 98.2 12.1 69 48-119 1-71 (342)
72 TIGR01526 nadR_NMN_Atrans nico 98.8 2E-08 4.3E-13 101.1 8.2 68 48-119 1-70 (325)
73 TIGR01510 coaD_prev_kdtB pante 98.8 3.2E-08 6.9E-13 89.5 8.8 53 263-322 1-53 (155)
74 PRK05627 bifunctional riboflav 98.7 9.5E-09 2.1E-13 102.9 5.5 94 263-371 15-127 (305)
75 cd02156 nt_trans nucleotidyl t 98.7 1.3E-08 2.9E-13 85.7 5.3 56 263-322 1-56 (105)
76 TIGR00124 cit_ly_ligase [citra 98.7 3E-08 6.5E-13 100.4 8.3 68 45-121 136-204 (332)
77 cd02169 Citrate_lyase_ligase C 98.7 1.5E-07 3.2E-12 94.0 11.8 158 45-231 111-279 (297)
78 PRK06973 nicotinic acid mononu 98.7 4.4E-07 9.5E-12 88.3 13.8 62 48-113 22-84 (243)
79 PLN02388 phosphopantetheine ad 98.7 3.5E-08 7.6E-13 92.0 5.9 62 260-322 18-80 (177)
80 PLN02388 phosphopantetheine ad 98.6 5.1E-08 1.1E-12 90.9 6.8 63 47-110 18-81 (177)
81 PRK13964 coaD phosphopantethei 98.6 8.7E-08 1.9E-12 86.2 6.8 54 262-322 2-55 (140)
82 cd02165 NMNAT Nicotinamide/nic 98.6 2.1E-07 4.6E-12 86.3 8.2 113 263-381 1-119 (192)
83 PRK08099 bifunctional DNA-bind 98.5 1.7E-07 3.7E-12 97.0 8.1 72 47-120 51-128 (399)
84 PRK05379 bifunctional nicotina 98.5 3.4E-07 7.4E-12 92.7 8.7 60 259-322 4-63 (340)
85 PRK07143 hypothetical protein; 98.5 4.2E-07 9E-12 90.2 8.0 99 258-371 12-120 (279)
86 PRK13671 hypothetical protein; 98.4 4.5E-07 9.8E-12 90.7 7.9 61 55-119 7-68 (298)
87 PRK13793 nicotinamide-nucleoti 98.4 7.5E-07 1.6E-11 84.4 7.2 62 48-113 4-66 (196)
88 cd02168 NMNAT_Nudix Nicotinami 98.3 8.1E-07 1.7E-11 82.8 6.5 55 264-322 2-56 (181)
89 PRK00071 nadD nicotinic acid m 98.3 1.8E-06 3.8E-11 81.1 8.4 112 260-382 3-126 (203)
90 cd02167 NMNAT_NadR Nicotinamid 98.3 1.1E-06 2.4E-11 80.1 6.4 56 263-322 1-56 (158)
91 COG0669 CoaD Phosphopantethein 98.3 1.4E-06 2.9E-11 79.8 6.4 55 261-322 2-56 (159)
92 COG1056 NadR Nicotinamide mono 98.3 1.5E-06 3.3E-11 80.8 6.2 63 46-112 1-64 (172)
93 TIGR00083 ribF riboflavin kina 98.2 5.7E-06 1.2E-10 82.5 9.1 136 51-231 1-155 (288)
94 TIGR01526 nadR_NMN_Atrans nico 98.1 3.7E-06 8E-11 84.8 6.7 57 261-322 1-58 (325)
95 KOG3351|consensus 98.1 2.3E-06 4.9E-11 83.4 4.5 67 43-110 137-204 (293)
96 cd09286 NMNAT_Eukarya Nicotina 98.1 7.5E-06 1.6E-10 78.7 7.9 81 50-134 2-95 (225)
97 KOG3351|consensus 98.1 3.4E-06 7.4E-11 82.2 4.8 62 260-322 141-203 (293)
98 TIGR00482 nicotinate (nicotina 98.0 1.5E-05 3.2E-10 74.3 8.1 110 266-382 2-119 (193)
99 PRK08887 nicotinic acid mononu 98.0 2.2E-05 4.9E-10 72.5 9.0 55 261-322 2-56 (174)
100 PRK13671 hypothetical protein; 98.0 1.3E-05 2.8E-10 80.4 7.2 88 268-371 7-106 (298)
101 PF06574 FAD_syn: FAD syntheta 98.0 3.8E-05 8.3E-10 70.1 9.4 86 46-133 3-100 (157)
102 PRK01153 nicotinamide-nucleoti 98.0 1.6E-05 3.5E-10 73.7 6.6 56 263-322 2-57 (174)
103 PRK06973 nicotinic acid mononu 98.0 3.3E-05 7.2E-10 75.3 9.0 119 259-383 20-148 (243)
104 PRK07152 nadD putative nicotin 98.0 3E-05 6.6E-10 78.5 9.1 115 261-383 1-124 (342)
105 COG0196 RibF FAD synthase [Coe 97.9 5.2E-05 1.1E-09 76.3 10.0 140 48-233 15-174 (304)
106 PLN02945 nicotinamide-nucleoti 97.9 3.7E-05 8E-10 74.3 7.6 69 47-115 21-91 (236)
107 PRK08099 bifunctional DNA-bind 97.8 2.6E-05 5.7E-10 80.9 6.5 62 259-322 50-116 (399)
108 COG1057 NadD Nicotinic acid mo 97.8 0.00012 2.6E-09 69.4 9.5 117 260-382 2-126 (197)
109 PRK13793 nicotinamide-nucleoti 97.7 0.00016 3.6E-09 68.6 8.6 57 262-322 5-61 (196)
110 PRK13670 hypothetical protein; 97.6 0.00013 2.9E-09 75.6 8.0 80 49-132 2-85 (388)
111 TIGR00124 cit_ly_ligase [citra 97.6 0.00012 2.5E-09 74.5 6.9 54 260-322 138-191 (332)
112 PF06574 FAD_syn: FAD syntheta 97.4 0.00015 3.2E-09 66.3 4.2 101 260-373 4-121 (157)
113 TIGR00083 ribF riboflavin kina 97.3 0.00025 5.3E-09 70.9 4.8 95 264-371 1-111 (288)
114 COG1056 NadR Nicotinamide mono 97.3 0.00031 6.7E-09 65.5 4.9 59 260-322 2-60 (172)
115 cd09286 NMNAT_Eukarya Nicotina 97.2 0.00035 7.7E-09 67.2 4.8 60 263-322 2-63 (225)
116 cd02169 Citrate_lyase_ligase C 97.2 0.0007 1.5E-08 68.0 6.6 54 260-322 113-166 (297)
117 PF08218 Citrate_ly_lig: Citra 97.1 0.0014 3E-08 61.5 6.8 56 57-121 8-64 (182)
118 PLN02945 nicotinamide-nucleoti 97.0 0.00091 2E-08 64.7 5.3 64 259-322 20-84 (236)
119 smart00764 Citrate_ly_lig Citr 96.9 0.002 4.4E-08 60.3 6.0 47 267-322 5-51 (182)
120 COG1323 Predicted nucleotidylt 96.8 0.0019 4.2E-08 66.4 6.0 63 55-120 8-70 (358)
121 PF05636 HIGH_NTase1: HIGH Nuc 96.8 0.0016 3.5E-08 67.7 5.4 85 53-141 6-101 (388)
122 PRK13670 hypothetical protein; 96.2 0.01 2.2E-07 61.8 6.8 91 263-368 3-104 (388)
123 COG0196 RibF FAD synthase [Coe 96.2 0.0037 8E-08 63.1 3.2 99 261-372 15-129 (304)
124 COG3053 CitC Citrate lyase syn 96.1 0.02 4.3E-07 57.8 7.8 68 43-119 140-208 (352)
125 PF05636 HIGH_NTase1: HIGH Nuc 95.4 0.012 2.6E-07 61.2 3.4 86 267-369 7-105 (388)
126 PRK00380 panC pantoate--beta-a 95.3 0.047 1E-06 54.6 7.1 71 45-119 19-92 (281)
127 COG1323 Predicted nucleotidylt 95.2 0.02 4.3E-07 59.1 4.3 51 268-321 8-59 (358)
128 TIGR00018 panC pantoate--beta- 94.6 0.084 1.8E-06 53.0 6.8 68 46-119 20-92 (282)
129 PLN02660 pantoate--beta-alanin 94.0 0.14 3E-06 51.5 6.9 68 46-119 19-91 (284)
130 cd00560 PanC Pantoate-beta-ala 93.1 0.25 5.3E-06 49.5 6.8 66 46-117 20-90 (277)
131 PRK00380 panC pantoate--beta-a 92.5 0.31 6.8E-06 48.8 6.7 60 260-322 21-83 (281)
132 TIGR00018 panC pantoate--beta- 92.1 0.33 7.1E-06 48.8 6.2 52 266-322 29-83 (282)
133 cd00560 PanC Pantoate-beta-ala 91.3 0.46 1E-05 47.6 6.3 53 265-322 28-83 (277)
134 KOG3199|consensus 90.5 1.1 2.4E-05 43.5 7.7 86 48-134 8-103 (234)
135 PLN02660 pantoate--beta-alanin 90.1 0.63 1.4E-05 46.9 6.0 53 265-322 27-82 (284)
136 TIGR00339 sopT ATP sulphurylas 89.7 0.93 2E-05 47.4 7.1 59 48-111 183-241 (383)
137 PLN02341 pfkB-type carbohydrat 89.2 0.1 2.2E-06 55.4 -0.4 30 259-288 412-441 (470)
138 PF08218 Citrate_ly_lig: Citra 89.1 0.83 1.8E-05 43.2 5.6 45 269-322 7-51 (182)
139 COG0414 PanC Panthothenate syn 88.8 0.59 1.3E-05 46.9 4.6 43 43-88 17-59 (285)
140 PF02569 Pantoate_ligase: Pant 87.9 0.44 9.5E-06 47.9 3.2 39 260-301 21-59 (280)
141 PRK13477 bifunctional pantoate 87.8 0.93 2E-05 49.1 5.8 63 49-119 21-90 (512)
142 COG0414 PanC Panthothenate syn 86.7 0.93 2E-05 45.5 4.6 40 260-302 21-60 (285)
143 PF02569 Pantoate_ligase: Pant 85.9 0.75 1.6E-05 46.3 3.5 70 46-119 20-92 (280)
144 PRK13477 bifunctional pantoate 83.3 1.1 2.4E-05 48.6 3.6 33 262-297 21-53 (512)
145 KOG3042|consensus 80.1 2.5 5.5E-05 41.4 4.4 44 42-88 18-61 (283)
146 COG3053 CitC Citrate lyase syn 76.7 3.9 8.5E-05 41.8 4.8 55 259-322 143-197 (352)
147 PLN02341 pfkB-type carbohydrat 73.2 0.96 2.1E-05 48.0 -0.5 30 46-75 412-441 (470)
148 KOG3199|consensus 67.6 12 0.00026 36.6 5.6 63 260-323 7-72 (234)
149 KOG3042|consensus 67.2 7.9 0.00017 38.0 4.3 40 260-302 23-62 (283)
150 TIGR00339 sopT ATP sulphurylas 65.2 20 0.00044 37.6 7.3 57 262-323 184-240 (383)
151 COG0162 TyrS Tyrosyl-tRNA synt 39.6 68 0.0015 34.0 6.2 109 261-387 32-142 (401)
152 PLN02486 aminoacyl-tRNA ligase 29.1 2.5E+02 0.0054 29.6 8.3 46 260-305 72-121 (383)
153 cd00517 ATPS ATP-sulfurylase. 29.0 1.4E+02 0.003 31.2 6.3 66 48-119 156-226 (353)
154 COG2046 MET3 ATP sulfurylase ( 27.3 1.7E+02 0.0037 31.0 6.6 59 46-111 181-239 (397)
155 PRK12418 cysteinyl-tRNA synthe 27.2 89 0.0019 32.9 4.6 41 46-87 6-55 (384)
156 cd00739 DHPS DHPS subgroup of 26.7 6.2E+02 0.014 24.9 11.5 28 279-308 189-216 (257)
157 PLN02946 cysteine-tRNA ligase 24.3 94 0.002 34.4 4.3 43 44-87 76-126 (557)
158 PRK04149 sat sulfate adenylylt 23.0 2.1E+02 0.0046 30.3 6.5 57 47-111 185-242 (391)
159 cd00672 CysRS_core catalytic c 22.9 1E+02 0.0022 29.6 3.8 53 46-104 18-78 (213)
160 PF13727 CoA_binding_3: CoA-bi 21.7 1.2E+02 0.0027 26.2 3.9 49 78-126 103-154 (175)
161 PRK14535 cysS cysteinyl-tRNA s 21.3 1.2E+02 0.0027 34.4 4.5 41 45-86 245-293 (699)
No 1
>KOG2804|consensus
Probab=100.00 E-value=6.6e-61 Score=466.08 Aligned_cols=257 Identities=64% Similarity=1.027 Sum_probs=241.1
Q ss_pred CCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhccccCceeecCCCC
Q psy5600 45 ASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRDAPWE 124 (413)
Q Consensus 45 ~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ap~~ 124 (413)
..|+.|||+||.|||||.||++.|+|||++||+.||||||++|+.+++.||++||+++||++.|++|||||||+.+|||.
T Consensus 60 ~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~APW~ 139 (348)
T KOG2804|consen 60 TDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAPWT 139 (348)
T ss_pred CCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCCcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchHHH
Q psy5600 125 TDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAH 204 (413)
Q Consensus 125 l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y~~ 204 (413)
++.+||++|+ ||||+|||+||.+++..|+|+.
T Consensus 140 lt~EFL~~HK------------------------------------------------IDfVAHDdIPY~s~gsdDiY~~ 171 (348)
T KOG2804|consen 140 LTPEFLEKHK------------------------------------------------IDFVAHDDIPYVSAGSDDIYKP 171 (348)
T ss_pred ccHHHHHhcc------------------------------------------------cceeeccCccccCCCchhHHHH
Confidence 9999999999 9999999999999888999999
Q ss_pred HHhCCeEEEcCCCCCCCHHHHHHHHHhchhhhhhhhcccCCCcccccchheeeeccceEEEEccccccCChhHHHHHHHH
Q psy5600 205 LKARGMFVATQRTEGVSTSDIVARIVRDYDIYVRRNLARGYTAKDLNVSFLNVTSRKVRVYADGIYDMFHQGHSRQLMQA 284 (413)
Q Consensus 205 ~ke~Gi~v~i~RT~gVSTSdII~RI~~~~~~~~~Rn~~rg~s~k~l~v~~~~~~~~~~iV~~~G~FDl~H~GHi~~L~~A 284 (413)
+|++|+|+.++||+|||||+||.||+++|+.|++||++||+++++||++|++
T Consensus 172 vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD~YvrRNL~RGys~keLnVsfl~---------------------------- 223 (348)
T KOG2804|consen 172 VKEAGMFLPTQRTEGVSTSDIITRIVRDYDVYVRRNLARGYSAKELNVSFLK---------------------------- 223 (348)
T ss_pred HHHhcccccccccCCccHHHHHHHHHHhHHHHHHhhhcccCCHHhcchHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999999988
Q ss_pred HhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHhccchhhhhHhHHhhchhhhccceeee
Q psy5600 285 KNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGERRVDMIQKWEEKSRDIIDTFLLLF 364 (413)
Q Consensus 285 k~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~~~~~d~~~~~e~~~~Dii~~f~~~~ 364 (413)
+.|+++-..|+++++.+|.+.+.+.....+++..|++.+.++|..|+.+|
T Consensus 224 ------------------------------~kk~~~~~k~~~lk~~vk~~~e~~~~~~~~l~~kW~e~s~e~i~~fle~f 273 (348)
T KOG2804|consen 224 ------------------------------EKKLRLQNKVDELKEKVKEQQEKVKEFSRDLIQKWEEKSREFIAGFLELF 273 (348)
T ss_pred ------------------------------hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 66777777888888888877777766677899999999999999999999
Q ss_pred ecCCCccchhhhhHHHhhhhcCCCCCCCCCCCCC----CCCCcccee
Q psy5600 365 GREGRLKHMWNEGKGKFLQAFSPPASPTRSRGRD----SSSPEINYE 407 (413)
Q Consensus 365 G~Dw~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 407 (413)
|.+..++.+|+++++++.+..|||.||+.+++.. +++++++|.
T Consensus 274 ~~~~~~n~~~~~~~~rl~~~~Sp~~sp~~~~~g~~~~~~~~~~~~~~ 320 (348)
T KOG2804|consen 274 GKGGALNAFDDELKGRLLQALSPPQSPSGSTNGRDTDKSDDDSEEEF 320 (348)
T ss_pred ccccchhhhHhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccchh
Confidence 9999999999999999999999999996666632 567777873
No 2
>KOG2803|consensus
Probab=100.00 E-value=5.4e-60 Score=461.90 Aligned_cols=256 Identities=36% Similarity=0.512 Sum_probs=215.5
Q ss_pred CCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhccccCceeecCCCC
Q psy5600 45 ASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRDAPWE 124 (413)
Q Consensus 45 ~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ap~~ 124 (413)
+.++.+||+|||||++|+||+++|+|||++ ||+||||||+|+++..+||+|||+++||++|+++||||||||.++||.
T Consensus 5 ~~~~~rVw~DGCfDm~HyGHanaLrQAkal--GdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~APyv 82 (358)
T KOG2803|consen 5 KNRPVRVWADGCFDMVHYGHANALRQAKAL--GDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAPYV 82 (358)
T ss_pred CCCceeEEeccchhhhhhhhhHHHHHHHHh--CCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCCee
Confidence 345788999999999999999999999999 589999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchHHH
Q psy5600 125 TDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAH 204 (413)
Q Consensus 125 l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y~~ 204 (413)
++.+++++++ +|+++||||++.+++|.|+|..
T Consensus 83 tt~~~md~y~------------------------------------------------cd~vvHGdDit~~a~G~D~Y~~ 114 (358)
T KOG2803|consen 83 TTLEWMDKYG------------------------------------------------CDYVVHGDDITLDADGLDCYRL 114 (358)
T ss_pred ccHHHHHHhC------------------------------------------------CeEEEeCCcceecCCCccHHHH
Confidence 9999999999 8999999999999999999999
Q ss_pred HHhCCeEEEcCCCCCCCHHHHHHHHHhchhhh---------hhhhcccCCCccc----ccchheee--------------
Q psy5600 205 LKARGMFVATQRTEGVSTSDIVARIVRDYDIY---------VRRNLARGYTAKD----LNVSFLNV-------------- 257 (413)
Q Consensus 205 ~ke~Gi~v~i~RT~gVSTSdII~RI~~~~~~~---------~~Rn~~rg~s~k~----l~v~~~~~-------------- 257 (413)
+|++|++.++.||.|+|||+|+.||+..-..+ .++...-|..... ..++++.+
T Consensus 115 vK~agrykevKRT~GVSTTelvgRmll~~~~~~~~~~~~~~~e~~~~~g~~~~~~sp~t~~s~F~~tt~~i~~~~~G~~p 194 (358)
T KOG2803|consen 115 VKAAGRYKEVKRTEGVSTTELVGRMLLKKRNHHSDEVSSSQRELSFSSGTDDDGLSPWTRVSVFLPTTQKIIQFSNGREP 194 (358)
T ss_pred HHHhcchheeeeccCcchhhhhhHhhhhccCCCccccchhhhhhhhccccCCcccCCccceeeeeecCccceEeecCCCC
Confidence 99999999999999999999999998532211 1222222221111 11122221
Q ss_pred eccceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCC--CCCCHHHHHHHHhhHHHHHhhhhhHH
Q psy5600 258 TSRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGR--TVMNDEKKFRFQNKIEEFKDRSKRVM 335 (413)
Q Consensus 258 ~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~--Pi~~~~eR~~~v~~i~~v~e~~k~Vd 335 (413)
....++||++|.|||||.||+.+|++|+.+ ||+|||||++|+.++.|||. ||||.-||.--|- +|||||
T Consensus 195 ~p~~kvVYvdGaFDLFH~GHl~~Le~ak~l--gdyLIvGI~~D~~vneykgs~~PiMnl~ER~Lsvl-------ackyVd 265 (358)
T KOG2803|consen 195 KPTDKVVYVDGAFDLFHAGHLDFLEKAKRL--GDYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVL-------ACKYVD 265 (358)
T ss_pred CCCCcEEEEcCchhhhccchHHHHHHHHhc--cCceEEEeecCcchhhhccCCCccchHHHHHHHHh-------hhcccc
Confidence 224789999999999999999999999999 79999999999999999994 9999999987776 999999
Q ss_pred HHhccchhhhhHhHHhhchhhhccc---eeeeec
Q psy5600 336 ENIGERRVDMIQKWEEKSRDIIDTF---LLLFGR 366 (413)
Q Consensus 336 ~vv~~~~~d~~~~~e~~~~Dii~~f---~~~~G~ 366 (413)
+||.+-... .+.++|+.| ++.+|.
T Consensus 266 eVvvGaP~~-------v~s~~i~~~~~~~v~~g~ 292 (358)
T KOG2803|consen 266 EVVVGAPYE-------VTSEFIKLFNIDKVAHGT 292 (358)
T ss_pred eEEEcCchh-------ccHHHHHhcCceEEEEec
Confidence 999875432 444444444 255665
No 3
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=2.8e-58 Score=470.56 Aligned_cols=271 Identities=31% Similarity=0.468 Sum_probs=228.5
Q ss_pred cccccccCCCCCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhcccc
Q psy5600 35 DEALFHDNNNASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYV 114 (413)
Q Consensus 35 ~~~~~~~~~~~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~V 114 (413)
...+| .+....++.|||++||||+||.||+++|+||+++| |+|||||++|+++.++||+|+|+++||+++|++|+||
T Consensus 41 ~~~~~-~~~~~~~~~rV~~~G~FDllH~GH~~~L~qAk~lG--d~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~V 117 (418)
T PLN02406 41 DLGIF-KKKKKKKPVRVYMDGCFDMMHYGHANALRQARALG--DELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWV 117 (418)
T ss_pred hhhhh-ccccCCCceEEEEcCeeCCCCHHHHHHHHHHHHhC--CEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCC
Confidence 44455 45556678899999999999999999999999995 8999999999999999999999999999999999999
Q ss_pred CceeecCCCCChHHHHH----HhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCC
Q psy5600 115 DEVVRDAPWETDDEFLA----KHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDD 190 (413)
Q Consensus 115 DeVvi~ap~~l~~dfi~----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~ 190 (413)
|+|++++||.++.+|++ +++ +|+++|||
T Consensus 118 D~Vv~~apy~~~~d~~~~li~~~~------------------------------------------------~D~vVhGd 149 (418)
T PLN02406 118 DEVIPDAPYAITEEFMNKLFNEYN------------------------------------------------IDYIIHGD 149 (418)
T ss_pred ceEEeCCccccchHHHHHHHHHhC------------------------------------------------CCEEEECC
Confidence 99999999999888885 566 89999999
Q ss_pred CCccCccccchHHHHHhCCeEEEcCCCCCCCHHHHHHHHHhchhhh----------hhhhcccCC--------Ccccc--
Q psy5600 191 IPYMSEFGTDVYAHLKARGMFVATQRTEGVSTSDIVARIVRDYDIY----------VRRNLARGY--------TAKDL-- 250 (413)
Q Consensus 191 ~~~~~~~~~d~y~~~ke~Gi~v~i~RT~gVSTSdII~RI~~~~~~~----------~~Rn~~rg~--------s~k~l-- 250 (413)
||...+++.|+|+.+|..|++..++||+|+|||+|++||+...... ..+++..+. ....-
T Consensus 150 D~~~~~~g~d~y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (418)
T PLN02406 150 DPCLLPDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQFEDGGSGSGTRVS 229 (418)
T ss_pred CccccCCchHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHhhhccccccccchhhhhhhhccccccccccCCCCCCCcc
Confidence 9988788999999999999999999999999999999998532210 111111110 01100
Q ss_pred -------cchhe----eeeccceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCC--CCCCCHHHH
Q psy5600 251 -------NVSFL----NVTSRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDEKK 317 (413)
Q Consensus 251 -------~v~~~----~~~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg--~Pi~~~~eR 317 (413)
.+.++ .+.+.+++||++|||||||+||+++|++|+++ ||+|||||++|+.++++|| +|+|+++||
T Consensus 230 ~~~~t~~~i~qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~l--Gd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER 307 (418)
T PLN02406 230 HFLPTSRRIVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARAL--GDFLLVGIHTDQTVSAHRGAHRPIMNLHER 307 (418)
T ss_pred cccccHHHHHHHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHh--CCEEEEEEeccHHHHHhcCCCCCCCCHHHH
Confidence 01111 12347889999999999999999999999999 7999999999999999998 699999999
Q ss_pred HHHHhhHHHHHhhhhhHHHHhccchhhh-hHhHHhhchhhhccceeeeecCCCc
Q psy5600 318 FRFQNKIEEFKDRSKRVMENIGERRVDM-IQKWEEKSRDIIDTFLLLFGREGRL 370 (413)
Q Consensus 318 ~~~v~~i~~v~e~~k~Vd~vv~~~~~d~-~~~~e~~~~Dii~~f~~~~G~Dw~~ 370 (413)
+++|+ +|+|||+||++.+.+. .+.++++++|+ +++|+||..
T Consensus 308 ~~~v~-------ack~VD~VVi~ap~~~~~~~i~~~~~d~-----vvhG~~~~~ 349 (418)
T PLN02406 308 SLSVL-------ACRYVDEVIIGAPWEVSKDMITTFNISL-----VVHGTVAEN 349 (418)
T ss_pred HHHHh-------ccCcccEEEeCCCCCCCHHHHHHhCCCE-----EEECCcCCC
Confidence 99999 9999999999877653 45588899999 999999853
No 4
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=6.5e-55 Score=439.67 Aligned_cols=290 Identities=30% Similarity=0.421 Sum_probs=237.8
Q ss_pred CCCCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhccccCceeecCC
Q psy5600 43 NNASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRDAP 122 (413)
Q Consensus 43 ~~~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ap 122 (413)
...+++++||++||||++|.||+++|+||++++ ++|+|||++|+.+.++|++|+++++||+++|++|+|||+|+++.|
T Consensus 6 ~~~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g--~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv~~~p 83 (353)
T PTZ00308 6 PKKPGTIRVWVDGCFDMLHFGHANALRQARALG--DELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVVEGYP 83 (353)
T ss_pred CCCCCcEEEEEEeecccCCHHHHHHHHHHHHhC--CEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEEECCC
Confidence 345678999999999999999999999999995 799999999999999999999999999999999999999999899
Q ss_pred CCChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchH
Q psy5600 123 WETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVY 202 (413)
Q Consensus 123 ~~l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y 202 (413)
|..+.+|+++++ +|+++||+|+..+.++.+.|
T Consensus 84 ~~~~~~fI~~l~------------------------------------------------~d~vv~GdD~~~g~~g~~~~ 115 (353)
T PTZ00308 84 YTTRLEDLERLE------------------------------------------------CDFVVHGDDISVDLNGRNSY 115 (353)
T ss_pred CCchHHHHHHhC------------------------------------------------CCEEEECCCCCCCCCccchH
Confidence 998899999999 89999999998888889999
Q ss_pred HHHHhCCeEEEcCCCCCCCHHHHHHHHHhchhhhh-----hhhccc---CCCc--ccc-c---chhee----eeccceEE
Q psy5600 203 AHLKARGMFVATQRTEGVSTSDIVARIVRDYDIYV-----RRNLAR---GYTA--KDL-N---VSFLN----VTSRKVRV 264 (413)
Q Consensus 203 ~~~ke~Gi~v~i~RT~gVSTSdII~RI~~~~~~~~-----~Rn~~r---g~s~--k~l-~---v~~~~----~~~~~~iV 264 (413)
+.||+.|+++.++||+|+|||+|++||+....... ..++.. .++. .-+ . +.++. +..++++|
T Consensus 116 ~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiv 195 (353)
T PTZ00308 116 QEIIDAGKFKVVKRTEGISTTDLVGRMLLCTKSHLLKSVDEVQLESSLFPYTPTSHCLTTSRKIVQFSNNRSPKPGDRIV 195 (353)
T ss_pred HHHHhCCeEEEEecCCCCCHHHHHHHHHHhhhccccccccccccccccccCCCcceeecchhheeeccccCCCCCCCeEE
Confidence 99999999999999999999999999996443211 011111 1110 000 0 01111 12246899
Q ss_pred EEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCC--CCCCCHHHHHHHHhhHHHHHhhhhhHHHHhccch
Q psy5600 265 YADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDEKKFRFQNKIEEFKDRSKRVMENIGERR 342 (413)
Q Consensus 265 ~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg--~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~~~~ 342 (413)
|++||||+||.||+++|++|+++ ||+|||||++|+.++++|| +|+++++||+++++ ++++||+|+.+..
T Consensus 196 ~~~G~FDl~H~GHi~~L~~A~~l--gd~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~-------a~~~Vd~Vvi~~~ 266 (353)
T PTZ00308 196 YVDGSFDLFHIGHIRVLQKAREL--GDYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVL-------SCRYVDEVVIGAP 266 (353)
T ss_pred EECCccCCCCHHHHHHHHHHHHh--CCEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHH-------hhCCCCeEEEcCC
Confidence 99999999999999999999999 7999999999999999998 59999999999998 9999999998755
Q ss_pred hh-hhHhHHhhchhhhccceeeeecCCCc--cchhh---hhHHHhhhhcCCCCCCCCCCC
Q psy5600 343 VD-MIQKWEEKSRDIIDTFLLLFGREGRL--KHMWN---EGKGKFLQAFSPPASPTRSRG 396 (413)
Q Consensus 343 ~d-~~~~~e~~~~Dii~~f~~~~G~Dw~~--~~~~~---~~k~~~~~~~~~~~~~~~~~~ 396 (413)
.+ ..+.++++++|+ +++|+||.. ...+. +...++-...-.|.++..||+
T Consensus 267 ~~~~~~~i~~~~~d~-----vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~~~sTt 321 (353)
T PTZ00308 267 FDVTKEVIDSLHINV-----VVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGCDLTTD 321 (353)
T ss_pred CCChHHHHHHhCCCE-----EEECCCCccccCCCcccchHHHhcCceEEEeCCCCCccHH
Confidence 44 457789999999 999999974 11111 233444455666777777765
No 5
>PLN02413 choline-phosphate cytidylyltransferase
Probab=100.00 E-value=7e-49 Score=382.48 Aligned_cols=245 Identities=46% Similarity=0.802 Sum_probs=213.4
Q ss_pred CCCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhccccCceeecCCC
Q psy5600 44 NASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRDAPW 123 (413)
Q Consensus 44 ~~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ap~ 123 (413)
...++++||++||||+||+||+++|+|||++||+++|||||++|++++++||+|||+++||+++|++|+|||+|++++||
T Consensus 23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acKyVDeVV~~aP~ 102 (294)
T PLN02413 23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKWVDEVIPDAPW 102 (294)
T ss_pred CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhcccccEEeeCCCc
Confidence 45678999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCc--cccch
Q psy5600 124 ETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSE--FGTDV 201 (413)
Q Consensus 124 ~l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~--~~~d~ 201 (413)
.++.+||++++ +|+++||++++... .+.|+
T Consensus 103 ~~t~efI~~~k------------------------------------------------pDiVvhGd~~~~d~~~~g~D~ 134 (294)
T PLN02413 103 VITQEFLDKHR------------------------------------------------IDYVAHDALPYADASGAGKDV 134 (294)
T ss_pred cccHHHHHHhC------------------------------------------------CCEEEECCCCCccccccCchh
Confidence 99999999999 89999999887644 46899
Q ss_pred HHHHHhCCeEEEcCCCCCCCHHHHHHHHHhchhhhhhhhcccCCCcccccchheeeeccceEEEEccccccCChhHHHHH
Q psy5600 202 YAHLKARGMFVATQRTEGVSTSDIVARIVRDYDIYVRRNLARGYTAKDLNVSFLNVTSRKVRVYADGIYDMFHQGHSRQL 281 (413)
Q Consensus 202 y~~~ke~Gi~v~i~RT~gVSTSdII~RI~~~~~~~~~Rn~~rg~s~k~l~v~~~~~~~~~~iV~~~G~FDl~H~GHi~~L 281 (413)
|+.+|++|++..++|++++|||+||+||+++|+.|++||++||+++++||+++++
T Consensus 135 Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~y~~Y~~Rn~~rg~~~~~l~v~~~~------------------------- 189 (294)
T PLN02413 135 YEFVKKIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLARGYSRKDLGVSYVK------------------------- 189 (294)
T ss_pred HHHHHHCCeEEEecCCCCcCHHHHHHHHHHHHHHHHHHHHHhcCCHHhcCchhhh-------------------------
Confidence 9999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHH-------hccchhhhhHhHHhhch
Q psy5600 282 MQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMEN-------IGERRVDMIQKWEEKSR 354 (413)
Q Consensus 282 ~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~v-------v~~~~~d~~~~~e~~~~ 354 (413)
+.++++-..|+++++.++.+.+- +..........|++...
T Consensus 190 ---------------------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 236 (294)
T PLN02413 190 ---------------------------------EKRLRVNMGLKKLREKVKEQQEKVGEKIQTVAKTAGMHRNEWVENAD 236 (294)
T ss_pred ---------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhH
Confidence 23333444444444444444332 22222334679999999
Q ss_pred hhhccceeeeecCCCccchhhhhHHHhhhhcCCCCCCCCCCC
Q psy5600 355 DIIDTFLLLFGREGRLKHMWNEGKGKFLQAFSPPASPTRSRG 396 (413)
Q Consensus 355 Dii~~f~~~~G~Dw~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 396 (413)
+++.+|+.+|+. ..+.+|.+.|+++++.+++|.+-..+..
T Consensus 237 ~~~~~f~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (294)
T PLN02413 237 RWVAGFLEKFEE--GCHKMGTAIKDRIQERLMRQQSSGLLEL 276 (294)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccccccccccc
Confidence 999999999997 4889999999999999999988666544
No 6
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=100.00 E-value=3.5e-38 Score=284.07 Aligned_cols=150 Identities=55% Similarity=0.890 Sum_probs=142.2
Q ss_pred CCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhccccCceeecCCCCCh
Q psy5600 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRDAPWETD 126 (413)
Q Consensus 47 ~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ap~~l~ 126 (413)
+++|||++|+|||||.||+++|++|+++|+.|+|||||++|++++++|++|+|+++||+++|++|+|||+|++++||.++
T Consensus 1 ~~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~ 80 (150)
T cd02174 1 RPVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTT 80 (150)
T ss_pred CCeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCCh
Confidence 46789999999999999999999999997558999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchHHHHH
Q psy5600 127 DEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLK 206 (413)
Q Consensus 127 ~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y~~~k 206 (413)
.+|+++++ +|++++|++|..+..+.++|+.++
T Consensus 81 ~~~i~~~~------------------------------------------------~d~vv~G~d~~~~~~~~~~~~~~~ 112 (150)
T cd02174 81 PEFLDKYK------------------------------------------------CDYVAHGDDIYLDADGEDCYQEVK 112 (150)
T ss_pred HHHHHHhC------------------------------------------------CCEEEECCCCCCCCCchhHHHHHH
Confidence 99999999 889999999987777789999999
Q ss_pred hCCeEEEcCCCCCCCHHHHHHHHHhchhhhhhhhcccC
Q psy5600 207 ARGMFVATQRTEGVSTSDIVARIVRDYDIYVRRNLARG 244 (413)
Q Consensus 207 e~Gi~v~i~RT~gVSTSdII~RI~~~~~~~~~Rn~~rg 244 (413)
+.|+++.++|++++||++|++||+++++.|.+||..+|
T Consensus 113 ~~g~~~~~~~~~~~Stt~ii~rI~~~~~~~~~r~~~~~ 150 (150)
T cd02174 113 DAGRFKEVKRTEGVSTTDLIGRILLDYRDYHRRNLQRG 150 (150)
T ss_pred hCCEEEEeCCCCCCCHHHHHHHHHHhHHHHHHhhhccC
Confidence 99999999999999999999999999999999998875
No 7
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=100.00 E-value=3.4e-36 Score=271.60 Aligned_cols=148 Identities=38% Similarity=0.555 Sum_probs=138.1
Q ss_pred CCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCC--CCCCCHHHHHHHHHhccccCceeecCCCC
Q psy5600 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDIERYEAVRHCRYVDEVVRDAPWE 124 (413)
Q Consensus 47 ~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg--~Pv~~~eER~~~V~a~r~VDeVvi~ap~~ 124 (413)
+.++||++|||||||.||+++|+||+++| |+|||||++|+.++.+|+ +|+|+++||+++|++|+|||+|++++|+.
T Consensus 1 ~~~iv~~~G~FD~~H~GHi~~L~~A~~lg--d~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~ 78 (152)
T cd02173 1 GDKVVYVDGAFDLFHIGHIEFLEKARELG--DYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYV 78 (152)
T ss_pred CCeEEEEcCcccCCCHHHHHHHHHHHHcC--CEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCc
Confidence 35799999999999999999999999995 799999999999998886 59999999999999999999999999999
Q ss_pred ChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccC--ccccchH
Q psy5600 125 TDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMS--EFGTDVY 202 (413)
Q Consensus 125 l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~--~~~~d~y 202 (413)
++.+|+++++ +|++++|+++... ..++++|
T Consensus 79 ~~~~~~~~~~------------------------------------------------~d~vv~G~d~~~~~~~~~~~~~ 110 (152)
T cd02173 79 ITKELIEHFK------------------------------------------------IDVVVHGKTEETPDSLDGEDPY 110 (152)
T ss_pred chHHHHHHhC------------------------------------------------CCEEEECCCCccccccCchHHH
Confidence 9999999999 8899999998754 3468899
Q ss_pred HHHHhCCeEEEcCCCCCCCHHHHHHHHHhchhhhhhhhcccC
Q psy5600 203 AHLKARGMFVATQRTEGVSTSDIVARIVRDYDIYVRRNLARG 244 (413)
Q Consensus 203 ~~~ke~Gi~v~i~RT~gVSTSdII~RI~~~~~~~~~Rn~~rg 244 (413)
+.++++|++..+++++++|||+|++||+++++.|++||.+++
T Consensus 111 ~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~~~~y~~r~~~k~ 152 (152)
T cd02173 111 AVPKEMGIFKEIDSGSDLTTRDIVNRIIKNRLAYEARNKKKE 152 (152)
T ss_pred HHHHhCCeEEEecCCCCCCHHHHHHHHHHhHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999875
No 8
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=1.7e-35 Score=303.14 Aligned_cols=159 Identities=31% Similarity=0.538 Sum_probs=144.8
Q ss_pred cccCCCCCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCC--CCCCCHHHHHHHHHhccccCc
Q psy5600 39 FHDNNNASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDIERYEAVRHCRYVDE 116 (413)
Q Consensus 39 ~~~~~~~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg--~Pv~~~eER~~~V~a~r~VDe 116 (413)
...+.++++.++||++||||+||.||+++|++|+++| |+|||||++|+.++++|| +|+|+++||+++|++|+|||+
T Consensus 242 ~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lG--d~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~VD~ 319 (418)
T PLN02406 242 SNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALG--DFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYVDE 319 (418)
T ss_pred hccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhC--CEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcccE
Confidence 3344566788999999999999999999999999994 899999999999999987 699999999999999999999
Q ss_pred eeecCCCCChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCcc--
Q psy5600 117 VVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYM-- 194 (413)
Q Consensus 117 Vvi~ap~~l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~-- 194 (413)
||+++||.++.+||++++ +|+++||+++..
T Consensus 320 VVi~ap~~~~~~~i~~~~------------------------------------------------~d~vvhG~~~~~~~ 351 (418)
T PLN02406 320 VIIGAPWEVSKDMITTFN------------------------------------------------ISLVVHGTVAENND 351 (418)
T ss_pred EEeCCCCCCCHHHHHHhC------------------------------------------------CCEEEECCcCCCcc
Confidence 999999999999999999 889999987532
Q ss_pred -CccccchHHHHHhCCeEEEcCCCCCCCHHHHHHHHHhchhhhhhhhcccCCCc
Q psy5600 195 -SEFGTDVYAHLKARGMFVATQRTEGVSTSDIVARIVRDYDIYVRRNLARGYTA 247 (413)
Q Consensus 195 -~~~~~d~y~~~ke~Gi~v~i~RT~gVSTSdII~RI~~~~~~~~~Rn~~rg~s~ 247 (413)
...+.|+|+.+|++|++..+++++++||++||+||++++..|++||.+|+.+.
T Consensus 352 ~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~RI~~~~~~y~~Rn~~K~~ke 405 (418)
T PLN02406 352 FLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVANHEAYQKRNEKKAESE 405 (418)
T ss_pred ccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 23468999999999999999999999999999999999999999999986544
No 9
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=3.8e-34 Score=289.08 Aligned_cols=151 Identities=34% Similarity=0.553 Sum_probs=140.5
Q ss_pred CCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCC--CCCCCHHHHHHHHHhccccCceeecCC
Q psy5600 45 ASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDIERYEAVRHCRYVDEVVRDAP 122 (413)
Q Consensus 45 ~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg--~Pv~~~eER~~~V~a~r~VDeVvi~ap 122 (413)
+++.++||++|||||||.||+++|++|+++| |+|||||++|+.++++|| +|+|+++||+++|++|+|||+|++++|
T Consensus 189 ~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lg--d~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~~ 266 (353)
T PTZ00308 189 KPGDRIVYVDGSFDLFHIGHIRVLQKARELG--DYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDEVVIGAP 266 (353)
T ss_pred CCCCeEEEECCccCCCCHHHHHHHHHHHHhC--CEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhCCCCeEEEcCC
Confidence 3456899999999999999999999999996 799999999999999887 599999999999999999999999999
Q ss_pred CCChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCcc--Cccccc
Q psy5600 123 WETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYM--SEFGTD 200 (413)
Q Consensus 123 ~~l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~--~~~~~d 200 (413)
+.++.+|+++++ +|+++||+++.. .+.++|
T Consensus 267 ~~~~~~~i~~~~------------------------------------------------~d~vv~G~d~~~~~~~~~~d 298 (353)
T PTZ00308 267 FDVTKEVIDSLH------------------------------------------------INVVVGGKFSDLVNEEGGSD 298 (353)
T ss_pred CCChHHHHHHhC------------------------------------------------CCEEEECCCCccccCCCccc
Confidence 999999999999 789999988864 344689
Q ss_pred hHHHHHhCCeEEEcCCCCCCCHHHHHHHHHhchhhhhhhhcccCC
Q psy5600 201 VYAHLKARGMFVATQRTEGVSTSDIVARIVRDYDIYVRRNLARGY 245 (413)
Q Consensus 201 ~y~~~ke~Gi~v~i~RT~gVSTSdII~RI~~~~~~~~~Rn~~rg~ 245 (413)
+|+.+|+.|++..+++++++|||+||+||++++..|++||.+|+.
T Consensus 299 ~y~~~k~~G~~~~i~~~~~~sTt~ii~RI~~~r~~~~~r~~~k~~ 343 (353)
T PTZ00308 299 PYEVPKAMGIFKEVDSGCDLTTDSIVDRVVKNRLAFLKRQAKKRA 343 (353)
T ss_pred chHHHhcCceEEEeCCCCCccHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999865
No 10
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=100.00 E-value=1.1e-33 Score=251.73 Aligned_cols=132 Identities=40% Similarity=0.574 Sum_probs=120.1
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCccccc-CCCCCCCCHHHHHHHHHhccccCceeecCCCCCh
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHR-KKGRTVMNDIERYEAVRHCRYVDEVVRDAPWETD 126 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~-~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ap~~l~ 126 (413)
|++||++||||+||+||+++|+|||++| |+|+|.+..|+++.+ +|++|||++++|+++|++|||||+|++++||..+
T Consensus 1 ~~rV~~~GtFDilH~GHi~~L~~Ak~lG--d~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~ 78 (140)
T COG0615 1 MKRVWADGTFDILHPGHIEFLRQAKKLG--DELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIK 78 (140)
T ss_pred CcEEEEeeEEEEechhHHHHHHHHHHhC--CeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccC
Confidence 4679999999999999999999999996 799999999988887 6678999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchHHHHH
Q psy5600 127 DEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLK 206 (413)
Q Consensus 127 ~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y~~~k 206 (413)
.+++++++ +|+|+||+||+ ...+.+.|+..|
T Consensus 79 ~~~i~~~k------------------------------------------------~Div~lG~D~~-~d~~~l~~~~~k 109 (140)
T COG0615 79 FEDIEEYK------------------------------------------------PDIVVLGDDQK-FDEDDLKYELVK 109 (140)
T ss_pred hHHHHHhC------------------------------------------------CCEEEECCCCc-CChHHHHHHHHH
Confidence 99999999 89999999999 455677777667
Q ss_pred hCCeEEEcCCCCC------CCHHHHHHHHHh
Q psy5600 207 ARGMFVATQRTEG------VSTSDIVARIVR 231 (413)
Q Consensus 207 e~Gi~v~i~RT~g------VSTSdII~RI~~ 231 (413)
+|.+++++||++ +||++|++||+.
T Consensus 110 -~G~~~~v~R~~g~~~~~~~st~~i~~~i~~ 139 (140)
T COG0615 110 -RGLFVEVKRTEGVSTCELISTSDIIKRILE 139 (140)
T ss_pred -cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence 999999999998 888898888863
No 11
>KOG2803|consensus
Probab=99.96 E-value=4e-29 Score=245.35 Aligned_cols=158 Identities=37% Similarity=0.562 Sum_probs=137.4
Q ss_pred CCCCCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCC--CCCCHHHHHHHHHhccccCceee
Q psy5600 42 NNNASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGR--TVMNDIERYEAVRHCRYVDEVVR 119 (413)
Q Consensus 42 ~~~~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~--Pv~~~eER~~~V~a~r~VDeVvi 119 (413)
+.++|..++||++|.|||||.||+.+|++|+.+| |||||||++|++++.+||. ||||+.||...|.+|||||+|++
T Consensus 192 ~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lg--dyLIvGI~~D~~vneykgs~~PiMnl~ER~LsvlackyVdeVvv 269 (358)
T KOG2803|consen 192 REPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLG--DYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVLACKYVDEVVV 269 (358)
T ss_pred CCCCCCCcEEEEcCchhhhccchHHHHHHHHhcc--CceEEEeecCcchhhhccCCCccchHHHHHHHHhhhcccceEEE
Confidence 3444557999999999999999999999999995 7999999999999999984 99999999999999999999999
Q ss_pred cCCCCChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCcccc
Q psy5600 120 DAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGT 199 (413)
Q Consensus 120 ~ap~~l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~ 199 (413)
++||..+.+||+.++ ++.|+||-.+.. .+..
T Consensus 270 GaP~~v~s~~i~~~~------------------------------------------------~~~v~~g~~~~~-~~~~ 300 (358)
T KOG2803|consen 270 GAPYEVTSEFIKLFN------------------------------------------------IDKVAHGTIPDF-RDPS 300 (358)
T ss_pred cCchhccHHHHHhcC------------------------------------------------ceEEEEeccccc-cCcc
Confidence 999999999999999 667777763322 2345
Q ss_pred chHHHHHhCCeEEEcCCCCCCCHHHHHHHHHhchhhhhhhhcccCCCcccc
Q psy5600 200 DVYAHLKARGMFVATQRTEGVSTSDIVARIVRDYDIYVRRNLARGYTAKDL 250 (413)
Q Consensus 200 d~y~~~ke~Gi~v~i~RT~gVSTSdII~RI~~~~~~~~~Rn~~rg~s~k~l 250 (413)
++|+.+|.+|++-.......++|..|++||..++..|.+||.+++.+...+
T Consensus 301 ~py~~~k~~~i~~~~~~~~dltte~Iv~RIis~r~~Ye~Rn~kk~~k~~~~ 351 (358)
T KOG2803|consen 301 DPYADPKRRGIFEEADSGSDLTTELIVERIISNRQAYEARNQKKEGKEAPL 351 (358)
T ss_pred CccccchhhcchhhcCCcccccHHHHHHHHHHHHHHHHHHhHHhhhcccch
Confidence 689999999998777666669999999999999999999999987655443
No 12
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.93 E-value=2.3e-26 Score=204.93 Aligned_cols=120 Identities=28% Similarity=0.361 Sum_probs=105.5
Q ss_pred eEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhh-cCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHhcc
Q psy5600 262 VRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHR-KKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGE 340 (413)
Q Consensus 262 ~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~-~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~~ 340 (413)
+.||++||||+||+||+++|++||++ ||+|+|.+.+|+.+.+ .|+.||+|++||+++++ +++|||+||++
T Consensus 2 ~rV~~~GtFDilH~GHi~~L~~Ak~l--Gd~liVv~a~de~~~~~~k~~pi~~~~qR~evl~-------s~ryVD~vi~~ 72 (140)
T COG0615 2 KRVWADGTFDILHPGHIEFLRQAKKL--GDELIVVVARDETVIKRKKRKPIMPEEQRAEVLE-------SLRYVDEVILG 72 (140)
T ss_pred cEEEEeeEEEEechhHHHHHHHHHHh--CCeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHH-------cCcchheeeeC
Confidence 45999999999999999999999999 7999999999999988 55569999999999999 99999999999
Q ss_pred chhhh-hHhHHhhchhhhccceeeeecCCCccchhhhhHHHhhh---hcCCCCCCCCCCCC
Q psy5600 341 RRVDM-IQKWEEKSRDIIDTFLLLFGREGRLKHMWNEGKGKFLQ---AFSPPASPTRSRGR 397 (413)
Q Consensus 341 ~~~d~-~~~~e~~~~Dii~~f~~~~G~Dw~~~~~~~~~k~~~~~---~~~~~~~~~~~~~~ 397 (413)
...++ .+.+++++||+ +++|+||.+. ...++.++.+ ...-++++-.|++.
T Consensus 73 ~p~~~~~~~i~~~k~Di-----v~lG~D~~~d--~~~l~~~~~k~G~~~~v~R~~g~~~~~ 126 (140)
T COG0615 73 APWDIKFEDIEEYKPDI-----VVLGDDQKFD--EDDLKYELVKRGLFVEVKRTEGVSTCE 126 (140)
T ss_pred CccccChHHHHHhCCCE-----EEECCCCcCC--hHHHHHHHHHcCCeeEEEeccCcccCc
Confidence 99998 99999999999 9999999955 5778888866 33445777767644
No 13
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.92 E-value=3.4e-25 Score=199.82 Aligned_cols=123 Identities=32% Similarity=0.381 Sum_probs=104.8
Q ss_pred ceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHhcc
Q psy5600 261 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGE 340 (413)
Q Consensus 261 ~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~~ 340 (413)
.++||++||||+||.||+++|++|+++|+.|+|||||++|++++++||+|++++++|+++++ ++++||+|+.+
T Consensus 2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~-------~~~~Vd~Vi~~ 74 (150)
T cd02174 2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVR-------HCKWVDEVVEG 74 (150)
T ss_pred CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHH-------hcCCCCeEEEC
Confidence 56899999999999999999999999932299999999999999999999999999999999 89999999998
Q ss_pred chhh-hhHhHHhhchhhhccceeeeecCCCccchhhh----hHHHhhhhcCCCCCCCCCCC
Q psy5600 341 RRVD-MIQKWEEKSRDIIDTFLLLFGREGRLKHMWNE----GKGKFLQAFSPPASPTRSRG 396 (413)
Q Consensus 341 ~~~d-~~~~~e~~~~Dii~~f~~~~G~Dw~~~~~~~~----~k~~~~~~~~~~~~~~~~~~ 396 (413)
...+ ..+.++++++|+ +++|+||.....+.+ +++ .-+....|.+|..|++
T Consensus 75 ~~~~~~~~~i~~~~~d~-----vv~G~d~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~Stt 129 (150)
T cd02174 75 APYVTTPEFLDKYKCDY-----VAHGDDIYLDADGEDCYQEVKD-AGRFKEVKRTEGVSTT 129 (150)
T ss_pred CCCCChHHHHHHhCCCE-----EEECCCCCCCCCchhHHHHHHh-CCEEEEeCCCCCCCHH
Confidence 7655 357789999999 999999986544333 332 4567888888877765
No 14
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.91 E-value=5.4e-24 Score=190.19 Aligned_cols=137 Identities=24% Similarity=0.262 Sum_probs=116.5
Q ss_pred CCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhccccCceeecCCCCCh
Q psy5600 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRDAPWETD 126 (413)
Q Consensus 47 ~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ap~~l~ 126 (413)
+..+|++.|+||++|.||..+|++|++++ +.++|++.+|+.+...+++|+++++||+++|++|+|||.|++. |+...
T Consensus 3 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~~--~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~~-~~~~~ 79 (144)
T cd02172 3 GKTVVLCHGVFDLLHPGHVRHLQAARSLG--DILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVLF-DNPTA 79 (144)
T ss_pred CCEEEEEecccCCCCHHHHHHHHHHHHhC--CeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEEC-CCCCH
Confidence 35689999999999999999999999995 6999999999888766667999999999999999999999986 66788
Q ss_pred HHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCcc-----ccch
Q psy5600 127 DEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEF-----GTDV 201 (413)
Q Consensus 127 ~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~-----~~d~ 201 (413)
.+|+++++ ++++++|.++....+ ...-
T Consensus 80 ~~fi~~l~------------------------------------------------~~~vv~G~d~~fg~~~~~~~~~g~ 111 (144)
T cd02172 80 LEIIDALQ------------------------------------------------PNIYVKGGDYENPENDVTGKIAPE 111 (144)
T ss_pred HHHHHHhC------------------------------------------------CCEEEECCCcccCccccccchhhh
Confidence 99999988 677888887754332 1445
Q ss_pred HHHHHhCCeEEEcCCCCCCCHHHHHHHHHhchh
Q psy5600 202 YAHLKARGMFVATQRTEGVSTSDIVARIVRDYD 234 (413)
Q Consensus 202 y~~~ke~Gi~v~i~RT~gVSTSdII~RI~~~~~ 234 (413)
++.|++.|....+.|++++|||+|++||+.+|+
T Consensus 112 ~~~l~~~g~~~~~~~~~~~sts~li~~i~~~~~ 144 (144)
T cd02172 112 AEAVKAYGGKIVFTGEIVFSSSALINRIFDELD 144 (144)
T ss_pred HHHHHHhCCEEEEecCCCcchHHHHHHHHhhcC
Confidence 789999987544349999999999999998874
No 15
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.91 E-value=9.9e-24 Score=184.83 Aligned_cols=133 Identities=39% Similarity=0.586 Sum_probs=117.9
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhccccCceeecCCCCChH
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRDAPWETDD 127 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ap~~l~~ 127 (413)
|++|++.|+||++|.||+.+|++|++++ ++|+|||+.|..+..+|++|+++.+||++++++|++||.+++.+|+....
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~~~ 78 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLG--DYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPWSYFK 78 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhC--CEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCCCHhH
Confidence 6789999999999999999999999996 69999999998887777779999999999999999999999998887655
Q ss_pred HHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchHHHHHh
Q psy5600 128 EFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLKA 207 (413)
Q Consensus 128 dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y~~~ke 207 (413)
. +.+++ ++++++|+++....+....|+.||+
T Consensus 79 ~-l~~~~------------------------------------------------~~~vv~G~d~~fg~~~~~~~~~l~~ 109 (136)
T cd02170 79 P-LEELK------------------------------------------------PDVIVLGDDQKNGVDEEEVYEELKK 109 (136)
T ss_pred H-HHHHC------------------------------------------------CCEEEECCCCCCCCcchhHHHHHHH
Confidence 4 45566 6788899998776667788999999
Q ss_pred CCeEEEcC--CCCCCCHHHHHHHHHh
Q psy5600 208 RGMFVATQ--RTEGVSTSDIVARIVR 231 (413)
Q Consensus 208 ~Gi~v~i~--RT~gVSTSdII~RI~~ 231 (413)
.|.++.++ ++.++|||.|+++|+.
T Consensus 110 ~g~~~~~~~~~~~~vSSt~Ir~~i~~ 135 (136)
T cd02170 110 RGKVIEVPRKKTEGISSSDIIKRILE 135 (136)
T ss_pred CCeEEEECCCCCCCCcHHHHHHHHHh
Confidence 99988888 9999999999999963
No 16
>PLN02413 choline-phosphate cytidylyltransferase
Probab=99.90 E-value=2.3e-24 Score=211.01 Aligned_cols=126 Identities=36% Similarity=0.536 Sum_probs=106.5
Q ss_pred eccceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHH
Q psy5600 258 TSRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMEN 337 (413)
Q Consensus 258 ~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~v 337 (413)
..+.++||++|||||||+||+++|++||++|++|+|||||++|+.++++||+|||++++|+++|+ +|+|||+|
T Consensus 24 ~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~-------acKyVDeV 96 (294)
T PLN02413 24 SDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLR-------HCKWVDEV 96 (294)
T ss_pred CCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHH-------hcccccEE
Confidence 45788999999999999999999999999987799999999999999999999999999999999 99999999
Q ss_pred hccchhh-hhHhHHhhchhhhccceeeeec----CC--CccchhhhhHHHhhhhcCCCCCCCCCCC
Q psy5600 338 IGERRVD-MIQKWEEKSRDIIDTFLLLFGR----EG--RLKHMWNEGKGKFLQAFSPPASPTRSRG 396 (413)
Q Consensus 338 v~~~~~d-~~~~~e~~~~Dii~~f~~~~G~----Dw--~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 396 (413)
|++...+ ..+-++++++|+ +++|+ +| .+.+.+..+|+. -.....|+++..||+
T Consensus 97 V~~aP~~~t~efI~~~kpDi-----VvhGd~~~~d~~~~g~D~Y~~vK~~-G~f~~i~Rt~gvSTT 156 (294)
T PLN02413 97 IPDAPWVITQEFLDKHRIDY-----VAHDALPYADASGAGKDVYEFVKKI-GKFKETKRTDGISTS 156 (294)
T ss_pred eeCCCccccHHHHHHhCCCE-----EEECCCCCccccccCchhHHHHHHC-CeEEEecCCCCcCHH
Confidence 9986654 346678899999 88995 34 234456667643 556677888877765
No 17
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.89 E-value=6e-23 Score=183.31 Aligned_cols=133 Identities=29% Similarity=0.345 Sum_probs=113.8
Q ss_pred CCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCC--CCCCCHHHHHHHHHhccccCceeecCCC
Q psy5600 46 SRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDIERYEAVRHCRYVDEVVRDAPW 123 (413)
Q Consensus 46 ~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg--~Pv~~~eER~~~V~a~r~VDeVvi~ap~ 123 (413)
.++++||+.|+||.+|.||..+|++|++++ ++++|||+.|+...+.|+ +|+++++||++++++|+|||+|++.+++
T Consensus 9 ~~~~~v~~~G~FDgvH~GH~~ll~~a~~~~--~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~ 86 (144)
T TIGR02199 9 RGKKIVFTNGCFDILHAGHVSYLQQARALG--DRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDED 86 (144)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHhC--CccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCC
Confidence 456789999999999999999999999995 689999999998776554 5899999999999999999999996554
Q ss_pred CChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchHH
Q psy5600 124 ETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYA 203 (413)
Q Consensus 124 ~l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y~ 203 (413)
...+|++.++ ++++++|+|+.... ...|+
T Consensus 87 -~~~~fi~~l~------------------------------------------------~~~vv~G~d~~~~~--~~~~~ 115 (144)
T TIGR02199 87 -TPEELIGELK------------------------------------------------PDILVKGGDYKVET--LVGAE 115 (144)
T ss_pred -CHHHHHHHhC------------------------------------------------CCEEEECCCCCCCc--chhHH
Confidence 4688999888 78889999875422 23467
Q ss_pred HHHhCC-eEEEcCCCCCCCHHHHHHHHHh
Q psy5600 204 HLKARG-MFVATQRTEGVSTSDIVARIVR 231 (413)
Q Consensus 204 ~~ke~G-i~v~i~RT~gVSTSdII~RI~~ 231 (413)
.+++.| .++.+++++++|||+|++||++
T Consensus 116 ~~~~~g~~v~~~~~~~~iSSs~Ir~ri~~ 144 (144)
T TIGR02199 116 LVESYGGQVVLLPFVEGRSTTAIIEKILK 144 (144)
T ss_pred HHHHcCCEEEEEeCCCCcCHHHHHHHHhC
Confidence 889887 5788999999999999999963
No 18
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.88 E-value=3.7e-22 Score=173.38 Aligned_cols=123 Identities=31% Similarity=0.415 Sum_probs=103.4
Q ss_pred EEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhccccCceeecCCCCChHHHH
Q psy5600 51 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRDAPWETDDEFL 130 (413)
Q Consensus 51 V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ap~~l~~dfi 130 (413)
|++.|+||++|.||.++|++|++++ ++|+|||++|+....++++|+++++||++++++|+|||.|++..||....+++
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~--~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l 78 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLG--DYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDI 78 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcC--CEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCccchHHHH
Confidence 5789999999999999999999995 79999999999876666679999999999999999999998878887666677
Q ss_pred HHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchHHHHHhC-C
Q psy5600 131 AKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLKAR-G 209 (413)
Q Consensus 131 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y~~~ke~-G 209 (413)
++++ ++++++|+|+.. -++.|++. |
T Consensus 79 ~~~~------------------------------------------------~~~vv~G~D~~g------~~~~l~~~~~ 104 (125)
T TIGR01518 79 IDFN------------------------------------------------IDVFVMGDDWEG------KFDFLKDECP 104 (125)
T ss_pred HHcC------------------------------------------------CCEEEECCCccc------hHHHHhhccC
Confidence 7777 788899988732 24566655 3
Q ss_pred -eEEEcCCCCCCCHHHHHHHH
Q psy5600 210 -MFVATQRTEGVSTSDIVARI 229 (413)
Q Consensus 210 -i~v~i~RT~gVSTSdII~RI 229 (413)
.++.+++++++|||.|++.|
T Consensus 105 ~~v~~v~~~~~vSST~Ir~~~ 125 (125)
T TIGR01518 105 LKVVYLPRTEGVSTTKIKKEI 125 (125)
T ss_pred cEEEEeCCCCCccHHHHHhhC
Confidence 35678999999999998764
No 19
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.88 E-value=5.6e-23 Score=185.71 Aligned_cols=97 Identities=28% Similarity=0.370 Sum_probs=89.0
Q ss_pred ceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCC--CCCCCHHHHHHHHhhHHHHHhhhhhHHHHh
Q psy5600 261 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDEKKFRFQNKIEEFKDRSKRVMENI 338 (413)
Q Consensus 261 ~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg--~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv 338 (413)
+++||++||||+||+||+++|++|+++ ||+|||||++|+.++++|| +|++++++|+++|+ ++++||+|+
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~l--gd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~-------~~~~Vd~V~ 72 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKAREL--GDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVL-------ACRYVDEVV 72 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHc--CCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHH-------hcCCCCEEE
Confidence 679999999999999999999999999 7999999999999999997 59999999999998 999999999
Q ss_pred ccchhh-hhHhHHhhchhhhccceeeeecCCCcc
Q psy5600 339 GERRVD-MIQKWEEKSRDIIDTFLLLFGREGRLK 371 (413)
Q Consensus 339 ~~~~~d-~~~~~e~~~~Dii~~f~~~~G~Dw~~~ 371 (413)
...+.+ ..+.++++++|+ +++|.||...
T Consensus 73 v~~~~~~~~~~~~~~~~d~-----vv~G~d~~~~ 101 (152)
T cd02173 73 IGAPYVITKELIEHFKIDV-----VVHGKTEETP 101 (152)
T ss_pred ECCCCcchHHHHHHhCCCE-----EEECCCCccc
Confidence 887655 457889999999 9999999753
No 20
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=3.9e-22 Score=202.22 Aligned_cols=132 Identities=32% Similarity=0.407 Sum_probs=113.8
Q ss_pred CCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCC--CCCCCHHHHHHHHHhccccCceeecCCCC
Q psy5600 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDIERYEAVRHCRYVDEVVRDAPWE 124 (413)
Q Consensus 47 ~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg--~Pv~~~eER~~~V~a~r~VDeVvi~ap~~ 124 (413)
.+++||++||||++|.||+.+|.|||++| |.|||||++|.++++.|| |||.+++.|+.++.++..||.|++... +
T Consensus 331 ~~~vvfTNGcFDIlH~GHvsyL~~Ar~lg--d~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~F~e-d 407 (467)
T COG2870 331 GKKVVFTNGCFDILHAGHVTYLAQARALG--DRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVIFDE-D 407 (467)
T ss_pred cCeEEEecchhhhccccHHHHHHHHHhhC--CeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEEecC-C
Confidence 34599999999999999999999999995 899999999999999998 799999999999999999999998654 4
Q ss_pred ChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchHHH
Q psy5600 125 TDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAH 204 (413)
Q Consensus 125 l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y~~ 204 (413)
+..+.|+.++ || |+|||+||.. +-|+. . +.
T Consensus 408 TP~~LI~~~~----------Pd--------------------------ilVKGgDy~~-~~i~g----------~---~~ 437 (467)
T COG2870 408 TPEELIEAVK----------PD--------------------------ILVKGGDYKI-EKIVG----------A---DI 437 (467)
T ss_pred CHHHHHHHhC----------cc--------------------------eEEccCCCCh-hhccc----------h---hh
Confidence 6778888888 66 7999999984 44331 1 25
Q ss_pred HHhCC-eEEEcCCCCCCCHHHHHHHHHh
Q psy5600 205 LKARG-MFVATQRTEGVSTSDIVARIVR 231 (413)
Q Consensus 205 ~ke~G-i~v~i~RT~gVSTSdII~RI~~ 231 (413)
++.+| .+..++...|.|||.||++|..
T Consensus 438 v~~~GG~v~~i~f~~g~STt~ii~ki~~ 465 (467)
T COG2870 438 VEAYGGEVLLIPFEEGKSTTKIIEKIRA 465 (467)
T ss_pred hhhcCCeEEEEecccCCcHHHHHHHHhc
Confidence 66676 5788999999999999999964
No 21
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.86 E-value=3.5e-21 Score=167.29 Aligned_cols=128 Identities=28% Similarity=0.366 Sum_probs=107.0
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhccccCceeecCCCCChH
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRDAPWETDD 127 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ap~~l~~ 127 (413)
|++|++.|+||++|.||..+|++|++++ ++|+|||+.|+....++.+|+++++||++++++|+|||+|+...+|....
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~--~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~ 78 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALG--DKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESIRYVDLVIPETNWEQKI 78 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhC--CEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcCCccCEEecCCCccChH
Confidence 6789999999999999999999999995 68999999997544334469999999999999999999998666666555
Q ss_pred HHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchHHHHHh
Q psy5600 128 EFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLKA 207 (413)
Q Consensus 128 dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y~~~ke 207 (413)
+.+++++ ++++++|+|+. ..++.|++
T Consensus 79 ~~~~~l~------------------------------------------------~~~vv~G~d~~------g~~~~l~~ 104 (129)
T cd02171 79 EDIKKYN------------------------------------------------VDVFVMGDDWE------GKFDFLKE 104 (129)
T ss_pred HHHHHhC------------------------------------------------CCEEEECCCCc------chHHHHHh
Confidence 5556666 67888888872 24678999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHh
Q psy5600 208 RGMFVATQRTEGVSTSDIVARIVR 231 (413)
Q Consensus 208 ~Gi~v~i~RT~gVSTSdII~RI~~ 231 (413)
.|.++.++++..+|||.|.+.|.+
T Consensus 105 ~~~v~~~~~~~~iSSt~Ir~~i~~ 128 (129)
T cd02171 105 YCEVVYLPRTKGISSTQLKEMLKK 128 (129)
T ss_pred CcEEEEeCCCCCcChHHHHHHHhh
Confidence 998888999999999999998853
No 22
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.86 E-value=1.9e-21 Score=201.17 Aligned_cols=135 Identities=27% Similarity=0.261 Sum_probs=115.6
Q ss_pred CCCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCC--CCCCCHHHHHHHHHhccccCceeecC
Q psy5600 44 NASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDIERYEAVRHCRYVDEVVRDA 121 (413)
Q Consensus 44 ~~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg--~Pv~~~eER~~~V~a~r~VDeVvi~a 121 (413)
+..+.++||+.|+||++|.||+++|++|++++ ++|+|||++|+.+.+.|+ +|+++++||.+++++|+|||+|++.+
T Consensus 336 ~~~~~~iv~~~G~fD~~H~GH~~~l~~a~~~~--~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~ 413 (473)
T PRK11316 336 RARGEKIVMTNGCFDILHAGHVSYLANARKLG--DRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE 413 (473)
T ss_pred HhcCCeEEEEecccccCCHHHHHHHHHHHHhC--CeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC
Confidence 44457899999999999999999999999995 799999999999987776 59999999999999999999998654
Q ss_pred CCCChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccch
Q psy5600 122 PWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDV 201 (413)
Q Consensus 122 p~~l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~ 201 (413)
.....+|+++++ +|++++|+++...+ ..+.
T Consensus 414 -~~~~~~~~~~~~------------------------------------------------~d~vv~G~d~~~~~-~~~~ 443 (473)
T PRK11316 414 -EDTPQRLIAEIL------------------------------------------------PDLLVKGGDYKPEE-IAGS 443 (473)
T ss_pred -CCCHHHHHHHhC------------------------------------------------CCEEEECCCCCCCc-cccH
Confidence 346788999998 77888888875432 2345
Q ss_pred HHHHHhCCeEEEcCCCCCCCHHHHHHHHH
Q psy5600 202 YAHLKARGMFVATQRTEGVSTSDIVARIV 230 (413)
Q Consensus 202 y~~~ke~Gi~v~i~RT~gVSTSdII~RI~ 230 (413)
+...+..|.++.++|++++|||+|++||.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~st~~i~~ri~ 472 (473)
T PRK11316 444 KEVWANGGEVKVLNFEDGCSTTNIIKKIR 472 (473)
T ss_pred HHHHHcCCEEEEEcCCCCcCHHHHHHHHh
Confidence 66666678899999999999999999995
No 23
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=1.4e-20 Score=190.92 Aligned_cols=142 Identities=25% Similarity=0.302 Sum_probs=112.6
Q ss_pred HHhCCeEEEcCCCCCCCHHHHHHHHHhchhhhhhhhcccCCCcccccchheeeeccceEEEEccccccCChhHHHHHHHH
Q psy5600 205 LKARGMFVATQRTEGVSTSDIVARIVRDYDIYVRRNLARGYTAKDLNVSFLNVTSRKVRVYADGIYDMFHQGHSRQLMQA 284 (413)
Q Consensus 205 ~ke~Gi~v~i~RT~gVSTSdII~RI~~~~~~~~~Rn~~rg~s~k~l~v~~~~~~~~~~iV~~~G~FDl~H~GHi~~L~~A 284 (413)
=.++|+++..-.|..+|..+|...+.. +...+....+. ..+....+++|||+||||++|.||+.+|.+|
T Consensus 287 N~AagiVVgKlGTatvs~~EL~nAV~p--------ni~~~~~~~~~---~~~~~~~~~vvfTNGcFDIlH~GHvsyL~~A 355 (467)
T COG2870 287 NAAAGIVVGKLGTATVSPEELEMAVAP--------NIESKLGLELV---EARLAAGKKVVFTNGCFDILHAGHVTYLAQA 355 (467)
T ss_pred hhhcceEEeeccceeecHHHHHhhhcc--------CcccccchHHH---HHHhhhcCeEEEecchhhhccccHHHHHHHH
Confidence 345678999999999999999883322 22222221111 1112234459999999999999999999999
Q ss_pred HhcCCCcEEEEEEcchhhhhhcCC--CCCCCHHHHHHHHhhHHHHHhhhhhHHHHhccchhhhhHhHHhhchhhhcccee
Q psy5600 285 KNVFPNVYLIVGVCSDALTHRKKG--RTVMNDEKKFRFQNKIEEFKDRSKRVMENIGERRVDMIQKWEEKSRDIIDTFLL 362 (413)
Q Consensus 285 k~l~~gd~LIVGV~sD~~v~~~Kg--~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~~~~~d~~~~~e~~~~Dii~~f~~ 362 (413)
|++ ||.||||+|||.++++.|| |||.++++|+.+++ ++..||-|+.-...-=..-++.++||+ .
T Consensus 356 r~l--gd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa-------~L~~VD~vV~F~edTP~~LI~~~~Pdi-----l 421 (467)
T COG2870 356 RAL--GDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLA-------ALESVDLVVIFDEDTPEELIEAVKPDI-----L 421 (467)
T ss_pred Hhh--CCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHh-------hcccceEEEEecCCCHHHHHHHhCcce-----E
Confidence 999 7999999999999999999 79999999999999 888888877664433456789999999 9
Q ss_pred eeecCCCcc
Q psy5600 363 LFGREGRLK 371 (413)
Q Consensus 363 ~~G~Dw~~~ 371 (413)
+-|-||+..
T Consensus 422 VKGgDy~~~ 430 (467)
T COG2870 422 VKGGDYKIE 430 (467)
T ss_pred EccCCCChh
Confidence 999999865
No 24
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.74 E-value=1.9e-18 Score=150.07 Aligned_cols=95 Identities=24% Similarity=0.318 Sum_probs=82.9
Q ss_pred EEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHhccch-
Q psy5600 264 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGERR- 342 (413)
Q Consensus 264 V~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~~~~- 342 (413)
|++.|+||++|.||+++|++|+++ +++++|||++|+....++.+|++++++|+++++ ++++||.+++..+
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~--~~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~-------~~~~Vd~vi~~~~~ 71 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQL--GDYLIVALSTDEFNLQKQKKAYHSYEHRKLILE-------TIRYVDLVIPEKSW 71 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHc--CCEEEEEEechHHHhhcCCCCCCCHHHHHHHHH-------cCCCccEEecCCCc
Confidence 578999999999999999999999 689999999999887666679999999999998 8999999987654
Q ss_pred hhhhHhHHhhchhhhccceeeeecCCCccc
Q psy5600 343 VDMIQKWEEKSRDIIDTFLLLFGREGRLKH 372 (413)
Q Consensus 343 ~d~~~~~e~~~~Dii~~f~~~~G~Dw~~~~ 372 (413)
.++.+.++++++++ +++|+||.++.
T Consensus 72 ~~f~~~l~~~~~~~-----vv~G~D~~g~~ 96 (125)
T TIGR01518 72 EQKKQDIIDFNIDV-----FVMGDDWEGKF 96 (125)
T ss_pred cchHHHHHHcCCCE-----EEECCCccchH
Confidence 34566678889999 99999997653
No 25
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.74 E-value=1.8e-18 Score=154.46 Aligned_cols=123 Identities=26% Similarity=0.251 Sum_probs=97.3
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCC--CCCCCHHHHHHHHhhHHHHHhhhhhHHHH
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDEKKFRFQNKIEEFKDRSKRVMEN 337 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg--~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~v 337 (413)
++++||+.|+||++|.||+++|++|+++ +++++|||++|+...++|+ .|++++++|+++++ ++++||.+
T Consensus 10 ~~~~v~~~G~FDgvH~GH~~ll~~a~~~--~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~-------~~~~VD~v 80 (144)
T TIGR02199 10 GKKIVFTNGCFDILHAGHVSYLQQARAL--GDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLA-------ALSSVDYV 80 (144)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHh--CCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHH-------hcCCCCEE
Confidence 4689999999999999999999999999 6889999999999887776 48999999999998 89999998
Q ss_pred hccchhhhhHhHHhhchhhhccceeeeecCCCccchh--hhhHHHhhhhcCCCCCCCCCCC
Q psy5600 338 IGERRVDMIQKWEEKSRDIIDTFLLLFGREGRLKHMW--NEGKGKFLQAFSPPASPTRSRG 396 (413)
Q Consensus 338 v~~~~~d~~~~~e~~~~Dii~~f~~~~G~Dw~~~~~~--~~~k~~~~~~~~~~~~~~~~~~ 396 (413)
+.....+..+-++.++++. +++|+||+....- ..+++.-.++...|.+|..|++
T Consensus 81 i~f~~~~~~~fi~~l~~~~-----vv~G~d~~~~~~~~~~~~~~~g~~v~~~~~~~~iSSs 136 (144)
T TIGR02199 81 VIFDEDTPEELIGELKPDI-----LVKGGDYKVETLVGAELVESYGGQVVLLPFVEGRSTT 136 (144)
T ss_pred EECCCCCHHHHHHHhCCCE-----EEECCCCCCCcchhHHHHHHcCCEEEEEeCCCCcCHH
Confidence 8754444444456788888 9999999875421 2233322467778887755543
No 26
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.74 E-value=5e-18 Score=148.76 Aligned_cols=97 Identities=32% Similarity=0.476 Sum_probs=88.2
Q ss_pred ceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHhcc
Q psy5600 261 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGE 340 (413)
Q Consensus 261 ~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~~ 340 (413)
+++|++.|+||.+|.||+++|++|+++ +++|+||+++|..+++.|+.|+++.++|+++++ ++++||.++..
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~--~~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~-------~~~~vd~v~~~ 71 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKL--GDYLIVGVARDETVAKIKRRPILPEEQRAEVVE-------ALKYVDEVILG 71 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHh--CCEEEEEECCcHHHHhcCCCCCCCHHHHHHHHH-------cCCCcCEEEEC
Confidence 478999999999999999999999999 589999999999988877789999999999998 88899999888
Q ss_pred chhhhhHhHHhhchhhhccceeeeecCCCcc
Q psy5600 341 RRVDMIQKWEEKSRDIIDTFLLLFGREGRLK 371 (413)
Q Consensus 341 ~~~d~~~~~e~~~~Dii~~f~~~~G~Dw~~~ 371 (413)
...++++.+.++.+|. +++|+||+.+
T Consensus 72 ~~~~~~~~l~~~~~~~-----vv~G~d~~fg 97 (136)
T cd02170 72 HPWSYFKPLEELKPDV-----IVLGDDQKNG 97 (136)
T ss_pred CCCCHhHHHHHHCCCE-----EEECCCCCCC
Confidence 8888888888889987 9999999654
No 27
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.72 E-value=1.3e-17 Score=150.93 Aligned_cols=138 Identities=20% Similarity=0.249 Sum_probs=100.3
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhccccCceeecCCCCChH
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRDAPWETDD 127 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ap~~l~~ 127 (413)
|++|++.|+||++|.||+.+|++|+.++ |+|+|||++|+.+..+|+.|+++.++|++||+. +++++.+...+.+..
T Consensus 1 ~~~v~~gGtFDplH~GH~~ll~~A~~~~--d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~--~~~~~~~~~~~~i~~ 76 (153)
T PRK00777 1 MMKVAVGGTFDPLHDGHRALLRKAFELG--KRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKK--FLKAVEYDREYEIVK 76 (153)
T ss_pred CcEEEEecccCCCCHHHHHHHHHHHHcC--CEEEEEEcCCccccccCCCCCCCHHHHHHHHHH--HHHhcCCCCcEEEEe
Confidence 4689999999999999999999999995 799999999998877777899999999999995 566654433322110
Q ss_pred HHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchHHHHHh
Q psy5600 128 EFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLKA 207 (413)
Q Consensus 128 dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y~~~ke 207 (413)
.-+.++ |+. . .++|+++.+++... ++..+-+..++
T Consensus 77 -i~d~~g----------p~~--------------------------~------~~~d~ivvs~et~~--~~~~in~~r~~ 111 (153)
T PRK00777 77 -IDDPYG----------PAL--------------------------E------DDFDAIVVSPETYP--GALKINEIRRE 111 (153)
T ss_pred -ccccCC----------Ccc--------------------------c------cCCCEEEEChhhhh--hHHHHHHHHHH
Confidence 111122 111 0 02788888888543 34556667788
Q ss_pred CCeE----EEcCC-----CCCCCHHHHHHHHHhchh
Q psy5600 208 RGMF----VATQR-----TEGVSTSDIVARIVRDYD 234 (413)
Q Consensus 208 ~Gi~----v~i~R-----T~gVSTSdII~RI~~~~~ 234 (413)
.|.. +.++. ++.+|||.|++++.....
T Consensus 112 ~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~~~ 147 (153)
T PRK00777 112 RGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDEHG 147 (153)
T ss_pred CCCCceEEEEEeeeecCCCCeeeHHHHHHhhhcccc
Confidence 8852 34444 677999999999987654
No 28
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.72 E-value=1e-17 Score=149.76 Aligned_cols=122 Identities=17% Similarity=0.174 Sum_probs=97.0
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHhc
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIG 339 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~ 339 (413)
.+++|++.|+||.+|.||.++|++|+++ ++.++|++++|+.++..+++|+++.++|+++++ ++++||.++.
T Consensus 3 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~--~~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~-------~lg~VD~vi~ 73 (144)
T cd02172 3 GKTVVLCHGVFDLLHPGHVRHLQAARSL--GDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLA-------ALGFVDYVVL 73 (144)
T ss_pred CCEEEEEecccCCCCHHHHHHHHHHHHh--CCeEEEEEeChHHhccCCCCCCCCHHHHHHHHH-------ccCCccEEEE
Confidence 4578999999999999999999999999 689999999999888777789999999999998 8999999987
Q ss_pred cchhhhhHhHHhhchhhhccceeeeecCCCccchh---------hhhHHHhhhhcCCCCCCCCCCC
Q psy5600 340 ERRVDMIQKWEEKSRDIIDTFLLLFGREGRLKHMW---------NEGKGKFLQAFSPPASPTRSRG 396 (413)
Q Consensus 340 ~~~~d~~~~~e~~~~Dii~~f~~~~G~Dw~~~~~~---------~~~k~~~~~~~~~~~~~~~~~~ 396 (413)
....+..+-+++++++. +++|.||+.+... ..+++...+.-.. +++..|++
T Consensus 74 ~~~~~~~~fi~~l~~~~-----vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~-~~~~~sts 133 (144)
T cd02172 74 FDNPTALEIIDALQPNI-----YVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFT-GEIVFSSS 133 (144)
T ss_pred CCCCCHHHHHHHhCCCE-----EEECCCcccCccccccchhhhHHHHHHhCCEEEEe-cCCCcchH
Confidence 65444455566788888 9999999875432 3344433443444 66666654
No 29
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.71 E-value=1.1e-17 Score=173.07 Aligned_cols=123 Identities=23% Similarity=0.147 Sum_probs=104.1
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCC--CCCCCHHHHHHHHhhHHHHHhhhhhHHHH
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDEKKFRFQNKIEEFKDRSKRVMEN 337 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg--~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~v 337 (413)
..++||+.|+||++|.||+++|++|+++ |++|+|||++|+.++++|+ +|++++++|.++++ ++++||.+
T Consensus 339 ~~~iv~~~G~fD~~H~GH~~~l~~a~~~--~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~-------~~~~vd~v 409 (473)
T PRK11316 339 GEKIVMTNGCFDILHAGHVSYLANARKL--GDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLA-------ALEAVDWV 409 (473)
T ss_pred CCeEEEEecccccCCHHHHHHHHHHHHh--CCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHH-------hcCcCCEE
Confidence 5799999999999999999999999999 6899999999999998887 59999999999998 89999999
Q ss_pred hccchhhhhHhHHhhchhhhccceeeeecCCCccc--hhhhhHHHhhhhcCCCCCCCCCCC
Q psy5600 338 IGERRVDMIQKWEEKSRDIIDTFLLLFGREGRLKH--MWNEGKGKFLQAFSPPASPTRSRG 396 (413)
Q Consensus 338 v~~~~~d~~~~~e~~~~Dii~~f~~~~G~Dw~~~~--~~~~~k~~~~~~~~~~~~~~~~~~ 396 (413)
++....+..+-++++.||+ +++|+||+... -..++++...++...|.+|..|++
T Consensus 410 ~~~~~~~~~~~~~~~~~d~-----vv~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~st~ 465 (473)
T PRK11316 410 VPFEEDTPQRLIAEILPDL-----LVKGGDYKPEEIAGSKEVWANGGEVKVLNFEDGCSTT 465 (473)
T ss_pred EeCCCCCHHHHHHHhCCCE-----EEECCCCCCCccccHHHHHHcCCEEEEEcCCCCcCHH
Confidence 8775444556688899998 99999997652 123445556678888999887765
No 30
>KOG2804|consensus
Probab=99.70 E-value=2.2e-17 Score=162.23 Aligned_cols=114 Identities=46% Similarity=0.709 Sum_probs=92.9
Q ss_pred eccceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHH
Q psy5600 258 TSRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMEN 337 (413)
Q Consensus 258 ~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~v 337 (413)
+.+...||++|.|||||.||.+.|++||+++|..||||||++|+...++||++||+++||++-|+ .|+|||+|
T Consensus 60 ~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lr-------HCryVDEV 132 (348)
T KOG2804|consen 60 TDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALR-------HCRYVDEV 132 (348)
T ss_pred CCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhh-------hhhhhhhh
Confidence 56788999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred hccchhhh-hHhHHhhchhhhccceeeeecCCCccchhhhhHH
Q psy5600 338 IGERRVDM-IQKWEEKSRDIIDTFLLLFGREGRLKHMWNEGKG 379 (413)
Q Consensus 338 v~~~~~d~-~~~~e~~~~Dii~~f~~~~G~Dw~~~~~~~~~k~ 379 (413)
|+.-.+-. .+=+++-+.|++.+--+-...++. ++.+..+|+
T Consensus 133 i~~APW~lt~EFL~~HKIDfVAHDdIPY~s~gs-dDiY~~vK~ 174 (348)
T KOG2804|consen 133 IPNAPWTLTPEFLEKHKIDFVAHDDIPYVSAGS-DDIYKPVKE 174 (348)
T ss_pred ccCCCccccHHHHHhcccceeeccCccccCCCc-hhHHHHHHH
Confidence 98865543 344566777774444344444433 444555544
No 31
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.68 E-value=9.6e-17 Score=139.48 Aligned_cols=113 Identities=23% Similarity=0.272 Sum_probs=88.1
Q ss_pred ceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHhcc
Q psy5600 261 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGE 340 (413)
Q Consensus 261 ~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~~ 340 (413)
+++|++.|+||.+|.||+.+|++|+++ +++|+|||++|+.....+.+|++++++|+++++ ++++||.+++.
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~--~~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~-------~~~~vd~v~~~ 71 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKAL--GDKLIVAVSTDEFNAGKGKKAVIPYEQRAEILE-------SIRYVDLVIPE 71 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHh--CCEEEEEEeccHhHHhcCCCCCCCHHHHHHHHH-------cCCccCEEecC
Confidence 468999999999999999999999999 589999999998654334458999999999998 78888888765
Q ss_pred ch-hhhhHhHHhhchhhhccceeeeecCCCccchhhhhHHHhhhhcCCCCC
Q psy5600 341 RR-VDMIQKWEEKSRDIIDTFLLLFGREGRLKHMWNEGKGKFLQAFSPPAS 390 (413)
Q Consensus 341 ~~-~d~~~~~e~~~~Dii~~f~~~~G~Dw~~~~~~~~~k~~~~~~~~~~~~ 390 (413)
.. .++++..++++++. +++|.||.++ ...+++. .++...|.+
T Consensus 72 ~~~~~f~~~~~~l~~~~-----vv~G~d~~g~--~~~l~~~-~~v~~~~~~ 114 (129)
T cd02171 72 TNWEQKIEDIKKYNVDV-----FVMGDDWEGK--FDFLKEY-CEVVYLPRT 114 (129)
T ss_pred CCccChHHHHHHhCCCE-----EEECCCCcch--HHHHHhC-cEEEEeCCC
Confidence 33 33555567788888 8999999765 3444433 455666643
No 32
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.62 E-value=2e-15 Score=130.73 Aligned_cols=126 Identities=25% Similarity=0.337 Sum_probs=86.2
Q ss_pred EEcCccCCCChHHHHHHHHHhhcCCCCE-EEEEEecCcccccCCCCCCCCHHHHHHHHHhccccCc--------------
Q psy5600 52 YADGIYDMFHQGHSRQLMQAKNVFPNVY-LIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDE-------------- 116 (413)
Q Consensus 52 ~~~G~FDlfH~GHi~~L~qAk~lf~gd~-LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~VDe-------------- 116 (413)
++.|+|||+|.||+.+|++|++++ +. ++|+|.+|....+.+ +++++.++|++||+.+...+.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~--~~~~vi~v~~~~~~~k~~-~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~ 77 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELF--DEDLVIVVPSDNSPHKDK-KPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKK 77 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHS--SESEEEEEEEEHHCHSTT-SSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHH
T ss_pred CeeeEcCcccHHHHHHHHHHHHhc--cccccccccccccccccc-cccCcHHHHHHHHHHHHhhcCCccccchhHHhHhh
Confidence 578999999999999999999997 44 688888887665432 489999999999999888877
Q ss_pred --------eeecCC-------CCChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccc
Q psy5600 117 --------VVRDAP-------WETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWE 181 (413)
Q Consensus 117 --------Vvi~ap-------~~l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~ 181 (413)
+++++. |....++++.++
T Consensus 78 ~~~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~----------------------------------------------- 110 (157)
T PF01467_consen 78 KYPDVKIYFVIGADNLRNFPKWRDWQEILKEVN----------------------------------------------- 110 (157)
T ss_dssp HSTSSCEEEEEECTHHEEEEESTTHHHHHHHHH-----------------------------------------------
T ss_pred hccccccceeccCCceeeecCCCcHHHHHHhCC-----------------------------------------------
Confidence 666666 655666777666
Q ss_pred eeeeeecCCCCccCccccchHHHHHhCCe-EEEcCCCCCCCHHHHHHH
Q psy5600 182 RIDFIAHDDIPYMSEFGTDVYAHLKARGM-FVATQRTEGVSTSDIVAR 228 (413)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~d~y~~~ke~Gi-~v~i~RT~gVSTSdII~R 228 (413)
+.++.++.++.........+......+. ++.......+|||+|++|
T Consensus 111 -~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSST~IR~~ 157 (157)
T PF01467_consen 111 -IIVVSRGGDDPIETISDDEILEKYPLGIIFILDPPRNEISSTEIRER 157 (157)
T ss_dssp -EEEEEHHHTTTHEEEEHCHHHHHTTCEEEEEEEGGGTTSSHHHHHHH
T ss_pred -EEEEEcCCCCccchhhhccccccccceeEEEecCCCCccCHHHHhcC
Confidence 5556655443221111233444444443 456667777999999886
No 33
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.61 E-value=6.5e-16 Score=139.91 Aligned_cols=102 Identities=22% Similarity=0.229 Sum_probs=80.3
Q ss_pred eEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHhccc
Q psy5600 262 VRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGER 341 (413)
Q Consensus 262 ~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~~~ 341 (413)
++|++.|+||++|.||+++|++|+++ +|+|+|||++|+++.++|+.|++++++|+++++ .+++.+.+..
T Consensus 2 ~~v~~gGtFDplH~GH~~ll~~A~~~--~d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~---------~~~~~~~~~~ 70 (153)
T PRK00777 2 MKVAVGGTFDPLHDGHRALLRKAFEL--GKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLK---------KFLKAVEYDR 70 (153)
T ss_pred cEEEEecccCCCCHHHHHHHHHHHHc--CCEEEEEEcCCccccccCCCCCCCHHHHHHHHH---------HHHHhcCCCC
Confidence 47899999999999999999999999 689999999999998888789999999999997 2344433333
Q ss_pred hh------hhh-HhHHhhchhhhccceeeeecC-CCccchhhhhHHH
Q psy5600 342 RV------DMI-QKWEEKSRDIIDTFLLLFGRE-GRLKHMWNEGKGK 380 (413)
Q Consensus 342 ~~------d~~-~~~e~~~~Dii~~f~~~~G~D-w~~~~~~~~~k~~ 380 (413)
.. |.. ..|. ..+|+ ++.|+| |.+...++++..+
T Consensus 71 ~~~i~~i~d~~gp~~~-~~~d~-----ivvs~et~~~~~~in~~r~~ 111 (153)
T PRK00777 71 EYEIVKIDDPYGPALE-DDFDA-----IVVSPETYPGALKINEIRRE 111 (153)
T ss_pred cEEEEeccccCCCccc-cCCCE-----EEEChhhhhhHHHHHHHHHH
Confidence 22 222 3343 45777 999999 8887777766544
No 34
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.60 E-value=9.2e-15 Score=132.58 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=70.6
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHh-ccccCceeecCCCCCh
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRH-CRYVDEVVRDAPWETD 126 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a-~r~VDeVvi~ap~~l~ 126 (413)
|+++++.|+|||+|.||+.++++|+++| |+|+|+++++. .| +|+++.++|++|++. +++++.+.+.....++
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~--d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t 73 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLF--DEVIVAVAINP----SK-KPLFSLEERVELIREATAHLPNVEVVSFDGLL 73 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHC--CEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEEecCCccH
Confidence 5689999999999999999999999997 79999998874 23 589999999999996 9999999887555688
Q ss_pred HHHHHHhc
Q psy5600 127 DEFLAKHK 134 (413)
Q Consensus 127 ~dfi~~~~ 134 (413)
.+++++++
T Consensus 74 ~~~~~~~~ 81 (159)
T PRK00168 74 VDFAREVG 81 (159)
T ss_pred HHHHHHcC
Confidence 99998888
No 35
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.58 E-value=6.7e-15 Score=133.42 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=73.5
Q ss_pred CCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHh-ccccCceeecCCCCC
Q psy5600 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRH-CRYVDEVVRDAPWET 125 (413)
Q Consensus 47 ~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a-~r~VDeVvi~ap~~l 125 (413)
.|++++++|+|||+|+||+++++||.++| |+|||||..+. .++|.|+.+||+++++. .+..++|-+...-++
T Consensus 1 ~~~iavypGSFDPiTnGHlDii~RA~~~F--d~viVaV~~np-----~K~plFsleER~~l~~~~~~~l~nV~V~~f~~L 73 (159)
T COG0669 1 MMKIAVYPGSFDPITNGHLDIIKRASALF--DEVIVAVAINP-----SKKPLFSLEERVELIREATKHLPNVEVVGFSGL 73 (159)
T ss_pred CCeeEEeCCCCCCCccchHHHHHHHHHhc--cEEEEEEEeCC-----CcCCCcCHHHHHHHHHHHhcCCCceEEEecccH
Confidence 37899999999999999999999999999 69999999885 44799999999999994 688999988776679
Q ss_pred hHHHHHHhc
Q psy5600 126 DDEFLAKHK 134 (413)
Q Consensus 126 ~~dfi~~~~ 134 (413)
..+|+++++
T Consensus 74 lvd~ak~~~ 82 (159)
T COG0669 74 LVDYAKKLG 82 (159)
T ss_pred HHHHHHHcC
Confidence 999999999
No 36
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.53 E-value=1.2e-14 Score=145.94 Aligned_cols=97 Identities=19% Similarity=0.189 Sum_probs=77.0
Q ss_pred EEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHhccch
Q psy5600 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGERR 342 (413)
Q Consensus 263 iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~~~~ 342 (413)
+|++.||||+||+||+.||++|+++ ||+|||||++|+++.++|++| .|+++|+++|+. .++ ++++.+.....
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~--gd~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~--fl~---~~~~~~~i~~i 73 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIET--GDEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLEN--FIK---KFTNKFRIRPI 73 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHc--CCEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHH--HHH---hcCCcEEEEec
Confidence 6999999999999999999999999 799999999999999888889 999999999983 111 33443333333
Q ss_pred hhhh-HhHHhhchhhhccceeeeecCCCccc
Q psy5600 343 VDMI-QKWEEKSRDIIDTFLLLFGREGRLKH 372 (413)
Q Consensus 343 ~d~~-~~~e~~~~Dii~~f~~~~G~Dw~~~~ 372 (413)
.|.. ....+.++|+ ++.+++...+.
T Consensus 74 ~D~~Gpt~~~~~~d~-----IVVS~ET~~~~ 99 (322)
T PRK01170 74 DDRYGNTLYEEDYEI-----IVVSPETYQRA 99 (322)
T ss_pred CCCCCCCcccCCCCE-----EEEeccccccH
Confidence 3433 3566678888 99999987764
No 37
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.53 E-value=1.4e-13 Score=126.48 Aligned_cols=128 Identities=19% Similarity=0.196 Sum_probs=88.9
Q ss_pred EEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHH-hccccC-ceeecCCCC---
Q psy5600 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR-HCRYVD-EVVRDAPWE--- 124 (413)
Q Consensus 50 ~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~-a~r~VD-eVvi~ap~~--- 124 (413)
++++.|+|||||.||++++++|++.+ |+|+|+|.++.. .+|.++.++.+||++|++ ++++++ ..+...|..
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~--D~lii~i~s~~~--~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~d~~ 76 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEV--DELIIGIGSAQE--SHTLENPFTAGERILMITQSLKEVGDLTYYIIPIEDIE 76 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 47899999999999999999999997 799999998874 345566778899999995 678884 422222321
Q ss_pred ChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchHHH
Q psy5600 125 TDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAH 204 (413)
Q Consensus 125 l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y~~ 204 (413)
....|..... ...| .+|+++.++. .....
T Consensus 77 ~~~~w~~~v~-------~~~p------------------------------------~~D~vf~~~~--------~~~~~ 105 (165)
T TIGR01527 77 RNSIWVSYVE-------SMTP------------------------------------PFDVVYSNNP--------LVRRL 105 (165)
T ss_pred HHHHHHHHHH-------HhCC------------------------------------CCCEEEECCH--------HHHHH
Confidence 1111222111 0011 1677777632 23567
Q ss_pred HHhCCeE-EEcC---CCCCCCHHHHHHHHHhch
Q psy5600 205 LKARGMF-VATQ---RTEGVSTSDIVARIVRDY 233 (413)
Q Consensus 205 ~ke~Gi~-v~i~---RT~gVSTSdII~RI~~~~ 233 (413)
++++|.. +..| |+ ++|+|+|.++|.+..
T Consensus 106 f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~~ 137 (165)
T TIGR01527 106 FKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNGE 137 (165)
T ss_pred HHHcCCEEEECCCcCCC-cccHHHHHHHHHcCC
Confidence 8999974 5556 77 899999999998753
No 38
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.52 E-value=2.6e-14 Score=109.90 Aligned_cols=65 Identities=45% Similarity=0.617 Sum_probs=59.5
Q ss_pred EEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhccccCc
Q psy5600 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDE 116 (413)
Q Consensus 50 ~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~VDe 116 (413)
++++.|+|||+|.||+.++++|++++ +.++|+|.+|+.....|+.|+++.++|.++++.|.+++.
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~--~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 65 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELF--DELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVDE 65 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhC--CEEEEEECchHhccccCCCCCCCHHHHHHHHHHhccccC
Confidence 48999999999999999999999997 499999999988887766699999999999999999875
No 39
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.51 E-value=3.9e-14 Score=142.20 Aligned_cols=128 Identities=14% Similarity=0.201 Sum_probs=95.0
Q ss_pred EEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHh-c-cccCceee---cCCCC
Q psy5600 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRH-C-RYVDEVVR---DAPWE 124 (413)
Q Consensus 50 ~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a-~-r~VDeVvi---~ap~~ 124 (413)
+|++.||||+||.||..+|++|+.++ |+|+|||++|+.++++|++| .|+++|+++|++ + ++++.+.+ .+||.
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~g--d~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~G 78 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETG--DEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYG 78 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcC--CEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCC
Confidence 69999999999999999999999994 89999999999998877778 999999999999 4 67776443 33444
Q ss_pred ChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchHHH
Q psy5600 125 TDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAH 204 (413)
Q Consensus 125 l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y~~ 204 (413)
.+. ..|+ +|+++.+..... .+..+-+.
T Consensus 79 pt~---------------~~~~------------------------------------~d~IVVS~ET~~--~~~~IN~~ 105 (322)
T PRK01170 79 NTL---------------YEED------------------------------------YEIIVVSPETYQ--RALKINEI 105 (322)
T ss_pred CCc---------------ccCC------------------------------------CCEEEEeccccc--cHHHHHHH
Confidence 331 0011 677777777653 45566778
Q ss_pred HHhCCeE----EEc---CCCCC--CCHHHHHHHHHhch
Q psy5600 205 LKARGMF----VAT---QRTEG--VSTSDIVARIVRDY 233 (413)
Q Consensus 205 ~ke~Gi~----v~i---~RT~g--VSTSdII~RI~~~~ 233 (413)
.++.|.- +.+ ....+ +|||.|++.-....
T Consensus 106 R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~eid~~ 143 (322)
T PRK01170 106 RIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEIDGN 143 (322)
T ss_pred HHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhcccc
Confidence 8888863 122 22344 69999988665544
No 40
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.50 E-value=2e-13 Score=123.07 Aligned_cols=78 Identities=24% Similarity=0.282 Sum_probs=67.7
Q ss_pred EEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHh-ccccCceeecCCCCChHH
Q psy5600 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRH-CRYVDEVVRDAPWETDDE 128 (413)
Q Consensus 50 ~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a-~r~VDeVvi~ap~~l~~d 128 (413)
++++.|+|||+|.||+.++++|++.+ |+|+|+++++. .| .++++.++|++|++. ++.++.+.+..-..++.+
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~--d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~ 73 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLF--DEVIVAVAVNP----SK-KPLFSLEERVELIREATKHLPNVEVDGFDGLLVD 73 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHH
Confidence 36899999999999999999999997 79999999774 23 589999999999995 899999887654458899
Q ss_pred HHHHhc
Q psy5600 129 FLAKHK 134 (413)
Q Consensus 129 fi~~~~ 134 (413)
++++++
T Consensus 74 ~l~~l~ 79 (153)
T cd02163 74 FARKHG 79 (153)
T ss_pred HHHHcC
Confidence 999998
No 41
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.47 E-value=2.2e-13 Score=122.14 Aligned_cols=80 Identities=21% Similarity=0.204 Sum_probs=68.8
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHH-hccccCceeecCC-CCC
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR-HCRYVDEVVRDAP-WET 125 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~-a~r~VDeVvi~ap-~~l 125 (413)
|++++++|+|||+|.||++++++|.++| |+|+|+++.+. .| .+.++.++|++|++ +++..+.|.+... -++
T Consensus 1 mkiai~~GSFDPih~GHl~ii~~A~~~~--D~v~v~v~~np----~K-~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l 73 (140)
T PRK13964 1 MKIAIYPGSFDPFHKGHLNILKKALKLF--DKVYVVVSINP----DK-SNASDLDSRFKNVKNKLKDFKNVEVLINENKL 73 (140)
T ss_pred CeEEEEeeeeCCCCHHHHHHHHHHHHhC--CEEEEEeccCC----CC-CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCc
Confidence 5689999999999999999999999998 79999999873 33 48999999999998 5787788777543 369
Q ss_pred hHHHHHHhc
Q psy5600 126 DDEFLAKHK 134 (413)
Q Consensus 126 ~~dfi~~~~ 134 (413)
+.+|+++++
T Consensus 74 ~v~~~~~~~ 82 (140)
T PRK13964 74 TAEIAKKLG 82 (140)
T ss_pred HHHHHHHCC
Confidence 999999999
No 42
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.43 E-value=5.7e-13 Score=114.83 Aligned_cols=68 Identities=19% Similarity=0.187 Sum_probs=58.1
Q ss_pred EEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhccc-cCceee
Q psy5600 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRY-VDEVVR 119 (413)
Q Consensus 50 ~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~-VDeVvi 119 (413)
++++.|+||++|.||..++++|++++ ++.|+|++.++..... +.+++++.++|++|++++.. ++.|++
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~-~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~v~~ 69 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEA-LDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILKDRLKVVP 69 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHc-CCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhccCCcEEEE
Confidence 47899999999999999999999997 5899999999975442 24589999999999999875 777765
No 43
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.43 E-value=1.4e-12 Score=120.23 Aligned_cols=137 Identities=17% Similarity=0.114 Sum_probs=94.5
Q ss_pred EEEcCccCCCChHHHHHHHHHhhcCC-CCEEEEEEecCcccc----cCC-CCCCCCHHHHHHHHHhccccCceeecCCCC
Q psy5600 51 VYADGIYDMFHQGHSRQLMQAKNVFP-NVYLIVGVCSDALTH----RKK-GRTVMNDIERYEAVRHCRYVDEVVRDAPWE 124 (413)
Q Consensus 51 V~~~G~FDlfH~GHi~~L~qAk~lf~-gd~LIVGV~sDe~v~----~~K-g~Pv~~~eER~~~V~a~r~VDeVvi~ap~~ 124 (413)
|++-|+||++|.||..+|++|+++++ .+...|.|+-|.... ..+ ..|+++.++|+++++++. ||.|++. |++
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~~-~f~ 79 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLVL-PFD 79 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEEe-CCC
Confidence 78899999999999999999999852 123555665554332 122 258999999999999998 9999975 342
Q ss_pred ------ChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccc
Q psy5600 125 ------TDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFG 198 (413)
Q Consensus 125 ------l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~ 198 (413)
...+|++++-. .. +++.++.|+|+....+.
T Consensus 80 ~~~~~~s~~~Fi~~il~-------------------------------------------~~-~~~~ivvG~Df~FG~~~ 115 (180)
T cd02064 80 KEFASLSAEEFVEDLLV-------------------------------------------KL-NAKHVVVGFDFRFGKGR 115 (180)
T ss_pred HHHHcCCHHHHHHHHHh-------------------------------------------hc-CCeEEEEccCCCCCCCC
Confidence 34566665420 00 16788889888654332
Q ss_pred ----cchHHHHHhCCe-EEEcCC----CCCCCHHHHHHHHHhch
Q psy5600 199 ----TDVYAHLKARGM-FVATQR----TEGVSTSDIVARIVRDY 233 (413)
Q Consensus 199 ----~d~y~~~ke~Gi-~v~i~R----T~gVSTSdII~RI~~~~ 233 (413)
+...+.+++.|. ++.++. ...+|||.|++.|....
T Consensus 116 ~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G~ 159 (180)
T cd02064 116 SGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEGD 159 (180)
T ss_pred CCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhCC
Confidence 334455677776 345554 47899999999886543
No 44
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.37 E-value=4.5e-12 Score=115.63 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=86.1
Q ss_pred EEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHH-hccccC----ceeecC-C-
Q psy5600 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR-HCRYVD----EVVRDA-P- 122 (413)
Q Consensus 50 ~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~-a~r~VD----eVvi~a-p- 122 (413)
++++.|+|||||.||+.++++|++.+ |+|+|+|.++... ++....++.+||++|++ +++.+| .|.+.. +
T Consensus 1 ~~v~~G~FdP~H~GHl~~i~~a~~~~--d~l~v~v~s~~~~--~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d 76 (163)
T cd02166 1 RALFIGRFQPFHLGHLKVIKWILEEV--DELIIGIGSAQES--HTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPD 76 (163)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCC
Confidence 36889999999999999999999997 7999999877543 23345689999999999 678875 333311 1
Q ss_pred CCChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchH
Q psy5600 123 WETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVY 202 (413)
Q Consensus 123 ~~l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y 202 (413)
+.....|....+ .++. ..|+++.++.++.
T Consensus 77 ~~~~~~w~~~v~---------------------------~~vp----------------~~div~~g~~~~~-------- 105 (163)
T cd02166 77 IERNSLWVSYVE---------------------------SLTP----------------PFDVVYSGNPLVA-------- 105 (163)
T ss_pred CCchHHHHHHHH---------------------------HHCC----------------CCCEEEECchHHH--------
Confidence 122333333332 0000 1466666653321
Q ss_pred HHHHhCCeE-EEcCCC--CCCCHHHHHHHHHh
Q psy5600 203 AHLKARGMF-VATQRT--EGVSTSDIVARIVR 231 (413)
Q Consensus 203 ~~~ke~Gi~-v~i~RT--~gVSTSdII~RI~~ 231 (413)
..+++.|.. +..+++ .++|+|+|.+.|.+
T Consensus 106 ~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~~ 137 (163)
T cd02166 106 RLFKEAGYEVRRPPMFNREEYSGTEIRRLMLG 137 (163)
T ss_pred HhhhhcCCeEecCCcccCCCCCHHHHHHHHHc
Confidence 356788875 477874 48999999999864
No 45
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.37 E-value=9.8e-13 Score=101.07 Aligned_cols=58 Identities=40% Similarity=0.564 Sum_probs=54.1
Q ss_pred EEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 263 iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
++++.|+||.+|.||+.+|++|++++ +.++|++.+|+..+..|..|+++.++|.++++
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~--~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~ 58 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELF--DELIVGVGSDQFVNPLKGEPVFSLEERLEMLK 58 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhC--CEEEEEECchHhccccCCCCCCCHHHHHHHHH
Confidence 58899999999999999999999994 69999999999998887779999999999998
No 46
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.35 E-value=7.7e-12 Score=112.97 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=62.1
Q ss_pred EEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHh-ccccCceeecCCCCChHH
Q psy5600 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRH-CRYVDEVVRDAPWETDDE 128 (413)
Q Consensus 50 ~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a-~r~VDeVvi~ap~~l~~d 128 (413)
++++.|+|||+|.||+.++++|++.+ |.|+|+++.+. .| .+..+.++|++|++. +...+.+.+..--..|.+
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~--d~v~~~~~~~p----~k-~~~~~~~~R~~m~~~a~~~~~~~~v~~~e~yt~d 73 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALF--DEVIVAVAKNP----SK-KPLFSLEERVELIKDATKHLPNVRVDVFDGLLVD 73 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhC--CEEEEEEcCCC----CC-CCCcCHHHHHHHHHHHHhhCCCeEEcCccchHHH
Confidence 47899999999999999999999997 79999998552 33 488999999999995 555555554332247888
Q ss_pred HHHHhc
Q psy5600 129 FLAKHK 134 (413)
Q Consensus 129 fi~~~~ 134 (413)
.++.++
T Consensus 74 t~~~l~ 79 (155)
T TIGR01510 74 YAKELG 79 (155)
T ss_pred HHHHcC
Confidence 888887
No 47
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.30 E-value=2.2e-11 Score=121.73 Aligned_cols=135 Identities=18% Similarity=0.158 Sum_probs=94.5
Q ss_pred EEEEcCccCCCChHHHHHHHHHhhcCCCCEE---EEEEecCcccc----cCC-CCCCCCHHHHHHHHHhccccCceeecC
Q psy5600 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYL---IVGVCSDALTH----RKK-GRTVMNDIERYEAVRHCRYVDEVVRDA 121 (413)
Q Consensus 50 ~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~L---IVGV~sDe~v~----~~K-g~Pv~~~eER~~~V~a~r~VDeVvi~a 121 (413)
.|++-|+||.+|.||.++|++|++++ +.+ .|.++-|.... ..+ .+++++.+||.+++++|. ||.+++.
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a--~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g-VD~~~~~- 90 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIA--RERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG-VDYVLVL- 90 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHH--HhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC-CCEEEEe-
Confidence 79999999999999999999999985 333 23454454322 122 257999999999999998 9999974
Q ss_pred CCC------ChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccC
Q psy5600 122 PWE------TDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMS 195 (413)
Q Consensus 122 p~~------l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~ 195 (413)
||+ ...+|++++=+. .-+++.++.|+|+...
T Consensus 91 ~F~~~~~~ls~e~Fi~~~l~~-------------------------------------------~l~~~~iVvG~Df~FG 127 (305)
T PRK05627 91 PFDEEFAKLSAEEFIEDLLVK-------------------------------------------GLNAKHVVVGFDFRFG 127 (305)
T ss_pred cCCHHHhcCCHHHHHHHHHHh-------------------------------------------ccCCCEEEECCCCCCC
Confidence 453 466788763100 0016788889988765
Q ss_pred ccccchHHHHHhC----CeE-EEcC----CCCCCCHHHHHHHHHh
Q psy5600 196 EFGTDVYAHLKAR----GMF-VATQ----RTEGVSTSDIVARIVR 231 (413)
Q Consensus 196 ~~~~d~y~~~ke~----Gi~-v~i~----RT~gVSTSdII~RI~~ 231 (413)
.++..-++.|++. |.. ..++ ....+|||.|.+.|.+
T Consensus 128 ~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~~ 172 (305)
T PRK05627 128 KKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALAE 172 (305)
T ss_pred CCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHHc
Confidence 5544455666664 653 3332 3478999999999865
No 48
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.12 E-value=1.2e-10 Score=104.71 Aligned_cols=60 Identities=30% Similarity=0.350 Sum_probs=51.4
Q ss_pred EEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCC-CCCCCHHHHHHHHHh
Q psy5600 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG-RTVMNDIERYEAVRH 110 (413)
Q Consensus 50 ~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg-~Pv~~~eER~~~V~a 110 (413)
+|++.|+||++|.||..+|++|.+++ +++|+|||++|+....++. .++++.++|+++|+.
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~-~d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~ 61 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLA-GEKLIIGVTSDELLKNKSLKELIEPYEERIANLHE 61 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHh-cCCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHH
Confidence 48899999999999999999999997 3789999999985543322 369999999999996
No 49
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.08 E-value=1.7e-10 Score=104.75 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=66.5
Q ss_pred ceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHhcc
Q psy5600 261 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGE 340 (413)
Q Consensus 261 ~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~~ 340 (413)
++++++.|+||.+|.||+.++++|+++ +|+|+|+++++. .| +|..+.++|++|++. +++.++.+...
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~--~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~------a~~~~~~v~v~ 67 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRL--FDEVIVAVAINP----SK-KPLFSLEERVELIRE------ATAHLPNVEVV 67 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHH--CCEEEEEECCCC----CC-CCCCCHHHHHHHHHH------HHcCCCCEEEe
Confidence 468999999999999999999999999 499999998764 23 589999999999882 45555544443
Q ss_pred chhh-hhHhHHhhchhhhccceeeeec
Q psy5600 341 RRVD-MIQKWEEKSRDIIDTFLLLFGR 366 (413)
Q Consensus 341 ~~~d-~~~~~e~~~~Dii~~f~~~~G~ 366 (413)
...+ ..+.+++++.++ ++.|-
T Consensus 68 ~~e~~t~~~~~~~~~~~-----~~~gl 89 (159)
T PRK00168 68 SFDGLLVDFAREVGATV-----IVRGL 89 (159)
T ss_pred cCCccHHHHHHHcCCCE-----EEecC
Confidence 3222 245667777776 56773
No 50
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.08 E-value=1.2e-09 Score=101.11 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=47.9
Q ss_pred EEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHh-cc
Q psy5600 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRH-CR 112 (413)
Q Consensus 50 ~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a-~r 112 (413)
++++.|+|||+|.||+.++++|.+.+ |+|+|+|.+...- .+.+..++.+||++|++. +.
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~--d~v~v~i~s~~~~--~~~~~p~~~~~R~~mi~~a~~ 61 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEV--DELIIGIGSAQES--HTLKNPFTAGERILMIRKALE 61 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhC--CEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHh
Confidence 68899999999999999999999986 7999999654311 233456899999999994 44
No 51
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.07 E-value=2e-10 Score=99.00 Aligned_cols=100 Identities=11% Similarity=0.139 Sum_probs=70.7
Q ss_pred EEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHhccch
Q psy5600 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGERR 342 (413)
Q Consensus 263 iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~~~~ 342 (413)
++++.|+||.+|.||+.+|++|++++ +|.|+|++.++..... +.++.++.++|+++++.+-. .++.+++...
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~-~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~------~~~~v~~~~~ 72 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEA-LDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILK------DRLKVVPVDF 72 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHc-CCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhcc------CCcEEEEEec
Confidence 57899999999999999999999995 4999999999987654 24589999999999983221 0333332221
Q ss_pred hh--------h-hHhHHhhchhhhccceeeeecCCCcc-chhh
Q psy5600 343 VD--------M-IQKWEEKSRDIIDTFLLLFGREGRLK-HMWN 375 (413)
Q Consensus 343 ~d--------~-~~~~e~~~~Dii~~f~~~~G~Dw~~~-~~~~ 375 (413)
.. + ...+....++. +++|.||..+ ..|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~-----~v~G~d~~~~~~~~~ 110 (143)
T cd02039 73 PEVKILLAVVFILKILLKVGPDK-----VVVGEDFAFGKNASY 110 (143)
T ss_pred ChhhccCHHHHHHHHHHHcCCcE-----EEECCccccCCchhh
Confidence 11 1 12233344444 9999999966 5565
No 52
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.05 E-value=3.1e-10 Score=102.78 Aligned_cols=61 Identities=26% Similarity=0.429 Sum_probs=57.0
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
+-.+|.+.||||-||.||-.||..|..+ |+.+++||+||++++++|.+++.|++.|++.|.
T Consensus 4 kfm~vavGGTFd~LH~GHk~LL~~A~~~--G~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~ 64 (158)
T COG1019 4 KFMKVAVGGTFDRLHDGHKKLLEVAFEI--GDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLR 64 (158)
T ss_pred cceEEEecccchhhhhhHHHHHHHHHHh--CCeEEEEEccHHHHHHhccccCCcHHHHHHHHH
Confidence 3467899999999999999999999999 789999999999999998899999999998875
No 53
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.05 E-value=2.4e-10 Score=105.09 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=75.1
Q ss_pred EEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhH-HH---Hhc
Q psy5600 264 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRV-ME---NIG 339 (413)
Q Consensus 264 V~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~V-d~---vv~ 339 (413)
++..|+||.||.||++++++|.++| |+|+|||.+++. .+|.++.++.++|++|++ ++++.+ +. +++
T Consensus 2 gl~~G~FdP~H~GHl~ii~~a~~~~--D~lii~i~s~~~--~~k~~~p~~~~eR~~mi~------~al~~~~~~~~~~vP 71 (165)
T TIGR01527 2 GFYIGRFQPFHLGHLEVIKKIAEEV--DELIIGIGSAQE--SHTLENPFTAGERILMIT------QSLKEVGDLTYYIIP 71 (165)
T ss_pred eEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCCC--CCCCCCCCCHHHHHHHHH------HHHhcCCCceEEEEe
Confidence 5789999999999999999999995 899999999885 456554556689999985 244444 23 444
Q ss_pred cchhhhhHhHHhh------chhhhccceeeeecCCCccchhh-hhHHHhhhhcCCC
Q psy5600 340 ERRVDMIQKWEEK------SRDIIDTFLLLFGREGRLKHMWN-EGKGKFLQAFSPP 388 (413)
Q Consensus 340 ~~~~d~~~~~e~~------~~Dii~~f~~~~G~Dw~~~~~~~-~~k~~~~~~~~~~ 388 (413)
....+..+.|.++ ..|. ++.|. +.|. .+++.-.++.+||
T Consensus 72 ~~d~~~~~~w~~~v~~~~p~~D~-----vf~~~-----~~~~~~f~e~g~~v~~~p 117 (165)
T TIGR01527 72 IEDIERNSIWVSYVESMTPPFDV-----VYSNN-----PLVRRLFKEAGYEVKRPP 117 (165)
T ss_pred cCCccHHHHHHHHHHHhCCCCCE-----EEECC-----HHHHHHHHHcCCEEEECC
Confidence 4445666788888 6677 67774 3332 2333335677887
No 54
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.04 E-value=3.2e-10 Score=98.08 Aligned_cols=55 Identities=27% Similarity=0.447 Sum_probs=43.8
Q ss_pred EEccccccCChhHHHHHHHHHhcCCCcE-EEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 265 YADGIYDMFHQGHSRQLMQAKNVFPNVY-LIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 265 ~~~G~FDl~H~GHi~~L~~Ak~l~~gd~-LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
+..|+||.+|.||+++|++|++++ +. +|+++.+|....+.+ +++++.++|++|++
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~--~~~~vi~v~~~~~~~k~~-~~~~~~~~R~~ml~ 56 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELF--DEDLVIVVPSDNSPHKDK-KPIFSFEERLEMLR 56 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHS--SESEEEEEEEEHHCHSTT-SSSSTHHHHHHHHH
T ss_pred CeeeEcCcccHHHHHHHHHHHHhc--cccccccccccccccccc-cccCcHHHHHHHHH
Confidence 468999999999999999999995 55 688899999876533 38999999999998
No 55
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.04 E-value=1.5e-09 Score=109.83 Aligned_cols=142 Identities=18% Similarity=0.105 Sum_probs=88.9
Q ss_pred CCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHh-ccccC--ceeecC-
Q psy5600 46 SRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRH-CRYVD--EVVRDA- 121 (413)
Q Consensus 46 ~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a-~r~VD--eVvi~a- 121 (413)
.+++++++.|+|||||.||+.++++|++.+ |+|+|++.+...-.. + +..++.+||++|++. ++.+| .|.+..
T Consensus 4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~--d~l~v~i~s~~~~~~-~-~~~~~~~~R~~mi~~~~~~~~~~r~~~~pi 79 (340)
T PRK05379 4 RRYDYLVFIGRFQPFHNGHLAVIREALSRA--KKVIVLIGSADLARS-I-KNPFSFEERAQMIRAALAGIDLARVTIRPL 79 (340)
T ss_pred ccceEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEEccCCCCCc-C-CCCCCHHHHHHHHHHHhhcCCCceEEEEEC
Confidence 456789999999999999999999999997 799999987643322 2 345899999999995 56554 333321
Q ss_pred CCC--ChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCcccc
Q psy5600 122 PWE--TDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGT 199 (413)
Q Consensus 122 p~~--l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~ 199 (413)
|-. ...-|....+ + .++...-..+|++..|.+.-.+ .
T Consensus 80 ~d~~~~~~~W~~~v~-------------------------------~-------~v~~~~~~~~~~~~~g~~~~~~---~ 118 (340)
T PRK05379 80 RDSLYNDSLWLAEVQ-------------------------------A-------AVAEHAGADARIGLIGHEKDAS---S 118 (340)
T ss_pred CCCCcChHHHHHHHH-------------------------------H-------HHHhccCCCCcEEEECCcCCCC---h
Confidence 111 1222332222 0 0000000125677777554211 1
Q ss_pred chHHHHHhCCeEEEcCCCCCCCHHHHHHHHHhch
Q psy5600 200 DVYAHLKARGMFVATQRTEGVSTSDIVARIVRDY 233 (413)
Q Consensus 200 d~y~~~ke~Gi~v~i~RT~gVSTSdII~RI~~~~ 233 (413)
.......++|.. ..+..+++|+|+|.++|+...
T Consensus 119 ~~~~~f~~~~~~-~~~~~~~~s~T~iR~~~~~~~ 151 (340)
T PRK05379 119 YYLRSFPQWELV-DVPNTEDLSATEIRDAYFEGR 151 (340)
T ss_pred HHHHhccccccc-cCCcccccCccHHHHHHHcCC
Confidence 112333566655 566788999999999998633
No 56
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.01 E-value=7.8e-10 Score=102.91 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=47.8
Q ss_pred EEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhc
Q psy5600 51 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHC 111 (413)
Q Consensus 51 V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~ 111 (413)
+++.|+|||||.||+.++++|.+.+ ++|+|+|.+..... .+ ++.++.+||++|++.+
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~--~~vii~i~s~~~~~-~~-~~p~~~~eR~~mi~~~ 58 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKA--KKVIILIGSARTAR-NI-KNPWTSEEREVMIEAA 58 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC--CeEEEEeCCCCCCC-CC-CCCcCHHHHHHHHHHH
Confidence 5789999999999999999999997 59999998775422 22 3668999999999963
No 57
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=98.99 E-value=8e-09 Score=95.80 Aligned_cols=82 Identities=12% Similarity=-0.009 Sum_probs=61.0
Q ss_pred EEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHh-ccccCceeecC------C
Q psy5600 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRH-CRYVDEVVRDA------P 122 (413)
Q Consensus 50 ~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a-~r~VDeVvi~a------p 122 (413)
++++.|+|||+|.||+.++++|++.++.|.|+|.++.+.. .|+.+.++.++|++|++. ++....+.+.. .
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~ 77 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPP---HKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDG 77 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCC
Confidence 3688999999999999999999999755899998877642 344688899999999995 56555555521 1
Q ss_pred CCChHHHHHHhc
Q psy5600 123 WETDDEFLAKHK 134 (413)
Q Consensus 123 ~~l~~dfi~~~~ 134 (413)
...|.+-|+.++
T Consensus 78 ~~~t~~tl~~l~ 89 (192)
T cd02165 78 PSYTIDTLEELR 89 (192)
T ss_pred CCCHHHHHHHHH
Confidence 234555555554
No 58
>PRK07143 hypothetical protein; Provisional
Probab=98.99 E-value=1e-08 Score=101.61 Aligned_cols=135 Identities=13% Similarity=0.154 Sum_probs=97.9
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccc-cCCCCCCCCHHHHHHHHHhccccCceeecCCCC--
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTH-RKKGRTVMNDIERYEAVRHCRYVDEVVRDAPWE-- 124 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~-~~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ap~~-- 124 (413)
...|++-|.||-+|.||..+|++|++. ++.++|.+.++.... +.+.+++++.+||++.++++. ||.+++. ||+
T Consensus 15 ~~~vvaiG~FDGvH~GHq~Ll~~a~~~--~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~G-vd~~~~~-~F~~~ 90 (279)
T PRK07143 15 EKPTFVLGGFESFHLGHLELFKKAKES--NDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANLG-FKNIILL-DFNEE 90 (279)
T ss_pred CCeEEEEccCCcCCHHHHHHHHHHHHC--CCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHCC-CCEEEEe-CCCHH
Confidence 346899999999999999999999998 478899888775432 122246999999999999985 6887764 444
Q ss_pred ----ChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccc
Q psy5600 125 ----TDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTD 200 (413)
Q Consensus 125 ----l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d 200 (413)
...+|++.+- . + .++.|+.|.|.....+...
T Consensus 91 ~a~ls~e~Fi~~ll-~---l-----------------------------------------~~~~iVvG~Df~FG~~r~G 125 (279)
T PRK07143 91 LQNLSGNDFIEKLT-K---N-----------------------------------------QVSFFVVGKDFRFGKNASW 125 (279)
T ss_pred HhCCCHHHHHHHHH-h---c-----------------------------------------CCCEEEECCCcccCCCCCC
Confidence 4567777643 0 0 0557778888876666555
Q ss_pred hHHHHHhCC-eEEEc----CCCCCCCHHHHHHHHHh
Q psy5600 201 VYAHLKARG-MFVAT----QRTEGVSTSDIVARIVR 231 (413)
Q Consensus 201 ~y~~~ke~G-i~v~i----~RT~gVSTSdII~RI~~ 231 (413)
-++.|++.+ .+..+ .....+|||.|.+-|..
T Consensus 126 ~~~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~ 161 (279)
T PRK07143 126 NADDLKEYFPNVHIVEILKINQQKISTSLLKEFIEF 161 (279)
T ss_pred CHHHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHc
Confidence 578899887 33322 23457999999888854
No 59
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.98 E-value=9.4e-09 Score=94.89 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=48.8
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHh-cccc--Cceee
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRH-CRYV--DEVVR 119 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a-~r~V--DeVvi 119 (413)
|+++++.|+|||+|.||+.++++++ .+ |.|++..+... ..+ ++.++.++|++|++. ++.. +.+.+
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~~-~~--d~v~~vP~~~~---~~~-k~~~~~~~R~~M~~~ai~~~~~~~~~v 69 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESLS-HF--DLVLLVPSIAH---AWG-KTMLDYETRCQLVDAFIQDLGLSNVQR 69 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHhh-cC--CEEEEEECCCC---ccc-CCCCCHHHHHHHHHHHHhccCCCceEE
Confidence 4688999999999999999999975 44 78888866531 123 377899999999994 5543 34444
No 60
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.97 E-value=1.7e-08 Score=94.70 Aligned_cols=85 Identities=12% Similarity=-0.059 Sum_probs=63.8
Q ss_pred CCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCC-CCCCCHHHHHHHHH-hccccCceeec----
Q psy5600 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG-RTVMNDIERYEAVR-HCRYVDEVVRD---- 120 (413)
Q Consensus 47 ~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg-~Pv~~~eER~~~V~-a~r~VDeVvi~---- 120 (413)
+|+++++.|+|||+|.||+.++++|++.++-|.+++.++.... .|+ +..++.++|++|++ +++..+.+.+.
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~ 79 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPP---HKPQKPLAPLEHRLAMLELAIADNPRFSVSDIEL 79 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHH
Confidence 5678999999999999999999999987644788888877642 233 36899999999999 56777766653
Q ss_pred --CCCCChHHHHHHhc
Q psy5600 121 --APWETDDEFLAKHK 134 (413)
Q Consensus 121 --ap~~l~~dfi~~~~ 134 (413)
.....|.+-++.++
T Consensus 80 ~~~~~syT~~tl~~l~ 95 (203)
T PRK00071 80 ERPGPSYTIDTLRELR 95 (203)
T ss_pred hCCCCCCHHHHHHHHH
Confidence 12334555565554
No 61
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=98.95 E-value=1e-09 Score=98.70 Aligned_cols=59 Identities=29% Similarity=0.339 Sum_probs=50.7
Q ss_pred EEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCC-CCCCCHHHHHHHHh
Q psy5600 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG-RTVMNDEKKFRFQN 322 (413)
Q Consensus 263 iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg-~Pi~~~~eR~~~v~ 322 (413)
.|++.|+||.+|.||..+|++|.+++ +++++|||++|+.....+. .+++++++|+++++
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~-~d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~ 60 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLA-GEKLIIGVTSDELLKNKSLKELIEPYEERIANLH 60 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHh-cCCcEEEEeCchhcccCCCCCCCCCHHHHHHHHH
Confidence 37889999999999999999999996 4899999999996644333 36889999999987
No 62
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=98.90 E-value=1.3e-09 Score=100.58 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=65.8
Q ss_pred EEEccccccCChhHHHHHHHHHhcCC-CcEEEEEEcchhhhh----hcCC-CCCCCHHHHHHHHhhHHHHHhhhhhHHHH
Q psy5600 264 VYADGIYDMFHQGHSRQLMQAKNVFP-NVYLIVGVCSDALTH----RKKG-RTVMNDEKKFRFQNKIEEFKDRSKRVMEN 337 (413)
Q Consensus 264 V~~~G~FDl~H~GHi~~L~~Ak~l~~-gd~LIVGV~sD~~v~----~~Kg-~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~v 337 (413)
|++-|+||.+|.||.++|++|+++++ .+..+|.++-|.... ..+. .|+++.++|+++++ ++. ||.+
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~-------~l~-vd~v 73 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLE-------SLG-VDYL 73 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHH-------HcC-CCEE
Confidence 68899999999999999999999852 123555555555443 2222 48999999999998 665 7776
Q ss_pred hccch---------hhhhHh-HHhhchhhhccceeeeecCCCcc
Q psy5600 338 IGERR---------VDMIQK-WEEKSRDIIDTFLLLFGREGRLK 371 (413)
Q Consensus 338 v~~~~---------~d~~~~-~e~~~~Dii~~f~~~~G~Dw~~~ 371 (413)
+.... .++++. +.+.+++. ++.|.||+.+
T Consensus 74 ~~~~f~~~~~~~s~~~Fi~~il~~~~~~~-----ivvG~Df~FG 112 (180)
T cd02064 74 LVLPFDKEFASLSAEEFVEDLLVKLNAKH-----VVVGFDFRFG 112 (180)
T ss_pred EEeCCCHHHHcCCHHHHHHHHHhhcCCeE-----EEEccCCCCC
Confidence 65432 223332 33335565 9999999864
No 63
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.89 E-value=2.2e-09 Score=97.33 Aligned_cols=80 Identities=25% Similarity=0.340 Sum_probs=65.3
Q ss_pred CCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhc----cccCc--eee
Q psy5600 46 SRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHC----RYVDE--VVR 119 (413)
Q Consensus 46 ~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~----r~VDe--Vvi 119 (413)
-++.+|.+.||||.+|-||..||..|..++ +.+++|+++|+.++++|+.++.|.+.|++-|... +.-.+ |-+
T Consensus 3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G--~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i 80 (158)
T COG1019 3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIG--DRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPI 80 (158)
T ss_pred ccceEEEecccchhhhhhHHHHHHHHHHhC--CeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEe
Confidence 356689999999999999999999999995 6999999999999998889999999999998851 21122 333
Q ss_pred cCCCCChH
Q psy5600 120 DAPWETDD 127 (413)
Q Consensus 120 ~ap~~l~~ 127 (413)
.+||+.+.
T Consensus 81 ~Dp~G~t~ 88 (158)
T COG1019 81 DDPYGPTV 88 (158)
T ss_pred cCCCCCCC
Confidence 66776553
No 64
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=98.87 E-value=5.3e-09 Score=95.25 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=53.1
Q ss_pred EEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHh-ccccCceee
Q psy5600 51 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRH-CRYVDEVVR 119 (413)
Q Consensus 51 V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a-~r~VDeVvi 119 (413)
+++.|+|||+|.||+.++++|.+.+ |+|+|+++++..- +.+++.++.++|++|++. ++.-+.+.+
T Consensus 2 gl~~G~F~P~H~GHl~li~~a~~~~--d~v~vi~~~~~~~--~~~~~~~~~~~R~~mi~~a~~~~~~~~v 67 (158)
T cd02167 2 GIVFGKFAPLHTGHVYLIYKALSQV--DELLIIVGSDDTR--DDARTGLPLEKRLRWLREIFPDQENIVV 67 (158)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCcc--cccCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 5789999999999999999999997 7999999988622 123578899999999994 666555544
No 65
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=98.86 E-value=5.9e-09 Score=94.14 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=63.9
Q ss_pred EEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHhccch
Q psy5600 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGERR 342 (413)
Q Consensus 263 iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~~~~ 342 (413)
+++..|+||.+|.||+.++++|.++| |.|+|+++++. .| .|.++.++|++|++ .+++.++.+.....
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~--d~v~v~~~~~~----~k-~~~~~~~~R~~ml~------~a~~~~~~~~v~~~ 67 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLF--DEVIVAVAVNP----SK-KPLFSLEERVELIR------EATKHLPNVEVDGF 67 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCC----CC-CCCCCHHHHHHHHH------HHHcCCCCEEecCC
Confidence 46789999999999999999999995 89999998764 23 48899999999987 24444443333332
Q ss_pred hhh-hHhHHhhchhhhccceeeeecC
Q psy5600 343 VDM-IQKWEEKSRDIIDTFLLLFGRE 367 (413)
Q Consensus 343 ~d~-~~~~e~~~~Dii~~f~~~~G~D 367 (413)
.++ .+.+++++.++ ++.|-|
T Consensus 68 es~t~~~l~~l~~~~-----~i~G~d 88 (153)
T cd02163 68 DGLLVDFARKHGANV-----IVRGLR 88 (153)
T ss_pred cchHHHHHHHcCCCE-----EEECCc
Confidence 222 45667777776 677843
No 66
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.85 E-value=3.2e-08 Score=92.34 Aligned_cols=150 Identities=16% Similarity=0.112 Sum_probs=88.5
Q ss_pred CccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHH-hccccCceeecCCCCChHHHHHHh
Q psy5600 55 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR-HCRYVDEVVRDAPWETDDEFLAKH 133 (413)
Q Consensus 55 G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~-a~r~VDeVvi~ap~~l~~dfi~~~ 133 (413)
-.|||+|.||+.++++|.+++ +.++|+|.+. +.+.++.++|++|++ +++..+.|.+....+++.
T Consensus 6 ~~~DPiH~GHl~i~~~a~~~~--d~~~V~v~p~-------~~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v------ 70 (182)
T smart00764 6 MNANPFTLGHRYLVEQAAAEC--DWVHLFVVSE-------DASLFSFDERFALVKKGTKDLDNVTVHSGSDYII------ 70 (182)
T ss_pred ECCCCCCHHHHHHHHHHHHHC--CceEEEEEeC-------CCCCCCHHHHHHHHHHHhccCCCEEEEecCCcee------
Confidence 479999999999999999998 4666666554 246789999999999 568778777654434332
Q ss_pred ccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCccccchHHHHHhC---Ce
Q psy5600 134 KESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLKAR---GM 210 (413)
Q Consensus 134 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~d~y~~~ke~---Gi 210 (413)
+.++-|+.|..+.+.+-- ..++.+=+|-+..-.+.+ ++..|+.|.|.....++..-.+.|++. |+
T Consensus 71 ------~~~~~~~~~~~~~~~~~~-----~~a~lsa~~Fi~~L~~~l-~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~ 138 (182)
T smart00764 71 ------SRATFPSYFLKEQDVVIK-----SQTTLDLRIFRKYIAPAL-GITHRYVGEEPFSPVTAIYNQTMKQTLLSPAI 138 (182)
T ss_pred ------ccccChhhhcCchhHHHH-----HHhcCCHHHHHHHHHHHc-CceEEEEcCCCCCCCCCccCHHHHHHHhhCCC
Confidence 234556665332222100 001111111111000001 145677788877665544445555554 54
Q ss_pred -EEEcCC----CCCCCHHHHHHHHHh
Q psy5600 211 -FVATQR----TEGVSTSDIVARIVR 231 (413)
Q Consensus 211 -~v~i~R----T~gVSTSdII~RI~~ 231 (413)
+..+++ ...+|+|.|.+-|..
T Consensus 139 ~v~~I~r~~~~g~~iSST~IR~~L~~ 164 (182)
T smart00764 139 EVVEIERKKANGQPISASTVRKLLKE 164 (182)
T ss_pred EEEEEecccCCCcEECHHHHHHHHHc
Confidence 344444 455899998888843
No 67
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=98.84 E-value=3.8e-09 Score=96.51 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=72.7
Q ss_pred EEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHH------HH
Q psy5600 264 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVM------EN 337 (413)
Q Consensus 264 V~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd------~v 337 (413)
++..|+||.||.||++++++|.++| |+|+|+|.++... .+.++-++.++|++|++. +++.++ .+
T Consensus 2 ~v~~G~FdP~H~GHl~~i~~a~~~~--d~l~v~v~s~~~~--~~~~~~~~~~~R~~mi~~------~~~~~~~~~~~v~v 71 (163)
T cd02166 2 ALFIGRFQPFHLGHLKVIKWILEEV--DELIIGIGSAQES--HTLENPFTAGERVLMIRR------ALEEEGIDLSRYYI 71 (163)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEecCCCCC--CCCCCCCCHHHHHHHHHH------HHHhcCCCcCeEEE
Confidence 5678999999999999999999995 8999999877654 233444678899999972 333332 23
Q ss_pred hccchhhhhHhHHhh------chhhhccceeeeecCCCccchhhhhHHHhhhhcCCCCC
Q psy5600 338 IGERRVDMIQKWEEK------SRDIIDTFLLLFGREGRLKHMWNEGKGKFLQAFSPPAS 390 (413)
Q Consensus 338 v~~~~~d~~~~~e~~------~~Dii~~f~~~~G~Dw~~~~~~~~~k~~~~~~~~~~~~ 390 (413)
++....+.-+.|.++ ..|+ ++.|.+|... .+++.=..+.++|.+
T Consensus 72 ~~~~d~~~~~~w~~~v~~~vp~~di-----v~~g~~~~~~----~f~~~g~~v~~~p~~ 121 (163)
T cd02166 72 IPVPDIERNSLWVSYVESLTPPFDV-----VYSGNPLVAR----LFKEAGYEVRRPPMF 121 (163)
T ss_pred EecCCCCchHHHHHHHHHHCCCCCE-----EEECchHHHH----hhhhcCCeEecCCcc
Confidence 333333455778887 4555 7778876542 222222345566654
No 68
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=98.80 E-value=8.3e-08 Score=89.43 Aligned_cols=79 Identities=15% Similarity=0.056 Sum_probs=57.0
Q ss_pred EcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCC-CCCCCHHHHHHHHH-hccccCceeecC------CCC
Q psy5600 53 ADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG-RTVMNDIERYEAVR-HCRYVDEVVRDA------PWE 124 (413)
Q Consensus 53 ~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg-~Pv~~~eER~~~V~-a~r~VDeVvi~a------p~~ 124 (413)
+.|+|||+|.||+.++++|.+.++-|.|++..+.+.- .|. +...+.++|++|++ +++..+.+.+.. ...
T Consensus 2 ~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~s 78 (193)
T TIGR00482 2 FGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPP---HKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGPS 78 (193)
T ss_pred ccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCCC
Confidence 5799999999999999999988755788877766642 233 35689999999999 677766655531 123
Q ss_pred ChHHHHHHhc
Q psy5600 125 TDDEFLAKHK 134 (413)
Q Consensus 125 l~~dfi~~~~ 134 (413)
.|.+-++.++
T Consensus 79 yT~~tl~~l~ 88 (193)
T TIGR00482 79 YTIDTLKHLK 88 (193)
T ss_pred CHHHHHHHHH
Confidence 4555555554
No 69
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.80 E-value=3e-08 Score=93.82 Aligned_cols=68 Identities=15% Similarity=0.038 Sum_probs=56.4
Q ss_pred CCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCC-CCCCCHHHHHHHHH-hccccCc
Q psy5600 46 SRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG-RTVMNDIERYEAVR-HCRYVDE 116 (413)
Q Consensus 46 ~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg-~Pv~~~eER~~~V~-a~r~VDe 116 (413)
++|+++++.|+|||.|.||+.+.++|.+.++-|.|+.-.+... -+|+ ++.-+.++|++|++ +|+....
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~---p~k~~~~~a~~~~R~~Ml~la~~~~~~ 70 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVP---PHKKKKELASAEHRLAMLELAIEDNPR 70 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCC---CCCCCccCCCHHHHHHHHHHHHhcCCC
Confidence 3688999999999999999999999998887788777766653 2344 57999999999999 6777665
No 70
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.79 E-value=7.8e-09 Score=87.06 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=50.6
Q ss_pred EEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhc
Q psy5600 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHC 111 (413)
Q Consensus 50 ~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~ 111 (413)
++++.|+||++|.||+.++++|++++ |.++|++..+..... ..++.+.++|.++++++
T Consensus 1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~--d~~i~~i~~~~~~~~--~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 1 KARFPGEPGYLHIGHAKLICRAKGIA--DQCVVRIDDNPPVKV--WQDPHELEERKESIEED 58 (105)
T ss_pred CEEeCCCCCCCCHHHHHHHHHHHHhC--CcEEEEEcCCCcccc--cCChHHHHHHHHHHHHH
Confidence 37889999999999999999999997 689999998875432 23689999999999997
No 71
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=98.77 E-value=5.6e-08 Score=98.20 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=52.7
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCC-CCCCHHHHHHHHH-hccccCceee
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGR-TVMNDIERYEAVR-HCRYVDEVVR 119 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~-Pv~~~eER~~~V~-a~r~VDeVvi 119 (413)
|+++++.|+|||+|.||+.++++|.+.++-|.|++..+.+. -+|.. +..+.++|++|++ +++..+.+.+
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v 71 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKKQKASNGEHRLNMLKLALKNLPKMEV 71 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhhCCCeEE
Confidence 56889999999999999999999997754478888776653 23443 4555699999998 5666555554
No 72
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.76 E-value=2e-08 Score=101.10 Aligned_cols=68 Identities=19% Similarity=0.114 Sum_probs=55.8
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHH-hccccCc-eee
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR-HCRYVDE-VVR 119 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~-a~r~VDe-Vvi 119 (413)
|+++++.|+|||+|.||+.++++|++++ |+|+|.+++... ..|+++.++.++|++||+ +|+.... |.+
T Consensus 1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~--d~v~v~~~~~~~--~~~~~~~~~~~~R~~~l~~~~~~~~~~v~v 70 (325)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKV--DELHIVVGSLFY--DSKAKRPPPVQDRLRWLREIFKYQKNQIFI 70 (325)
T ss_pred CcEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCc--CccCCCCCCHHHHHHHHHHHhccCCCeEEE
Confidence 4688999999999999999999999997 799999987321 114468999999999999 5677776 554
No 73
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=98.76 E-value=3.2e-08 Score=89.49 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=45.7
Q ss_pred EEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 263 iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
|++..|+||.+|.||++++++|+++| |.|+++++.+ ..| .+..+.++|++|++
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~--d~v~~~~~~~----p~k-~~~~~~~~R~~m~~ 53 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALF--DEVIVAVAKN----PSK-KPLFSLEERVELIK 53 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhC--CEEEEEEcCC----CCC-CCCcCHHHHHHHHH
Confidence 47789999999999999999999994 8999999743 223 37889999999997
No 74
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=98.74 E-value=9.5e-09 Score=102.86 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=67.7
Q ss_pred EEEEccccccCChhHHHHHHHHHhcCCCcEE---EEEEcchhhhhh----cCC-CCCCCHHHHHHHHhhHHHHHhhhhhH
Q psy5600 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYL---IVGVCSDALTHR----KKG-RTVMNDEKKFRFQNKIEEFKDRSKRV 334 (413)
Q Consensus 263 iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~L---IVGV~sD~~v~~----~Kg-~Pi~~~~eR~~~v~~i~~v~e~~k~V 334 (413)
.|++-|+||.+|.||.++|++|++++ +.+ .|.++-|..... .+. +++++.++|+++++ ++. |
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a--~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~-------~~g-V 84 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIA--RERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLA-------ELG-V 84 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHH--HhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHH-------HcC-C
Confidence 79999999999999999999999984 443 345555654432 222 57999999999998 666 7
Q ss_pred HHHhccc---------hhhhhHh--HHhhchhhhccceeeeecCCCcc
Q psy5600 335 MENIGER---------RVDMIQK--WEEKSRDIIDTFLLLFGREGRLK 371 (413)
Q Consensus 335 d~vv~~~---------~~d~~~~--~e~~~~Dii~~f~~~~G~Dw~~~ 371 (413)
|.++.-. ..++++. +++++++. +++|.||+.+
T Consensus 85 D~~~~~~F~~~~~~ls~e~Fi~~~l~~~l~~~~-----iVvG~Df~FG 127 (305)
T PRK05627 85 DYVLVLPFDEEFAKLSAEEFIEDLLVKGLNAKH-----VVVGFDFRFG 127 (305)
T ss_pred CEEEEecCCHHHhcCCHHHHHHHHHHhccCCCE-----EEECCCCCCC
Confidence 7766532 2234443 23456666 9999999864
No 75
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.74 E-value=1.3e-08 Score=85.69 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=48.3
Q ss_pred EEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 263 iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
++++.|+||.+|.||+.++++|+++| |.+++++..+..... ..++.+.++|.++++
T Consensus 1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~--d~~i~~i~~~~~~~~--~~~~~~~~~R~~~l~ 56 (105)
T cd02156 1 KARFPGEPGYLHIGHAKLICRAKGIA--DQCVVRIDDNPPVKV--WQDPHELEERKESIE 56 (105)
T ss_pred CEEeCCCCCCCCHHHHHHHHHHHHhC--CcEEEEEcCCCcccc--cCChHHHHHHHHHHH
Confidence 36789999999999999999999994 899999999887642 226889999999987
No 76
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.72 E-value=3e-08 Score=100.38 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHH-hccccCceeecC
Q psy5600 45 ASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR-HCRYVDEVVRDA 121 (413)
Q Consensus 45 ~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~-a~r~VDeVvi~a 121 (413)
.++.+++.+.|+|||||.||+.++++|.++| |.|+|+|..+ .++.++.++|++|++ .++..++|.+..
T Consensus 136 ~~~~~i~~~~g~fdP~t~GH~~li~~A~~~~--d~~~v~v~~~-------~~~~f~~~~R~~~v~~~~~~~~nv~v~~ 204 (332)
T TIGR00124 136 TPGNKIGSIVMNANPFTNGHRYLIEQAARQC--DWLHLFVVKE-------DASLFSYDERFALVKQGIQDLSNVTVHN 204 (332)
T ss_pred cCCCcEEEEEeCcCCCchHHHHHHHHHHHHC--CEEEEEEEeC-------CCCCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 3456889999999999999999999999998 6888888643 257999999999999 478888877653
No 77
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.68 E-value=1.5e-07 Score=94.04 Aligned_cols=158 Identities=12% Similarity=0.057 Sum_probs=94.5
Q ss_pred CCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHH-hccccCceeecCCC
Q psy5600 45 ASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR-HCRYVDEVVRDAPW 123 (413)
Q Consensus 45 ~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~-a~r~VDeVvi~ap~ 123 (413)
.+..+++-+.|+|||+|.||+.++++|.+.+ |.++|.+.+. +.+.++.++|++|++ +++..+.+.+....
T Consensus 111 ~~~~~~~~~~~~FDPiH~GHl~ii~~a~~~~--d~~~V~i~~~-------~~~~~~~e~R~~ml~~ai~~~~~v~v~~~~ 181 (297)
T cd02169 111 QPGKKIAAIVMNANPFTLGHRYLVEKAAAEN--DWVHLFVVSE-------DKSLFSFADRFKLVKKGTKHLKNVTVHSGG 181 (297)
T ss_pred cCCCceEEEEecCCCCchHHHHHHHHHHhhC--CeEEEEEEcC-------CCCCCCHHHHHHHHHHHhCCCCCEEEEecC
Confidence 3446889999999999999999999999998 5666766553 257899999999999 46777777776555
Q ss_pred CChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhcccccccccccccc--ccCCCccceeeeeecCCCCccCccccch
Q psy5600 124 ETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAK--QGKGKAWERIDFIAHDDIPYMSEFGTDV 201 (413)
Q Consensus 124 ~l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~kg~~~~~~~~~~~~~~~~~~~~~~d~ 201 (413)
+++.+. ++-|++|-.+-|.|...- ++.+=+|-+ ..+. . ++..++.|.|.....++..-
T Consensus 182 ~l~v~~------------~~~~~~~~~~~~~~~~~~-----a~lsa~~Fi~iL~~~--l-~~~~ivvG~Df~FG~~r~G~ 241 (297)
T cd02169 182 DYIISS------------ATFPSYFIKEQDVVIKAQ-----TALDARIFRKYIAPA--L-NITKRYVGEEPFSRVTAIYN 241 (297)
T ss_pred Ceeecc------------ccChhhhcCChhHHHHHH-----hcCCHHHHHHHHHHH--c-CCcEEEEcCCCCCCCcchhH
Confidence 554321 234444443333322211 111111111 1110 0 14566778887665443222
Q ss_pred HHHHH---hCCeE-EEc----CCCCCCCHHHHHHHHHh
Q psy5600 202 YAHLK---ARGMF-VAT----QRTEGVSTSDIVARIVR 231 (413)
Q Consensus 202 y~~~k---e~Gi~-v~i----~RT~gVSTSdII~RI~~ 231 (413)
...++ +.|.. ..+ .....+|||.|.+-|.+
T Consensus 242 ~~l~~~~~~~gf~v~~v~~~~~~g~~ISST~IR~~l~~ 279 (297)
T cd02169 242 QTMQEELLSPAIEVIEIERKKYDGQPISASTVRQLLKE 279 (297)
T ss_pred HHHHHhcccCCCEEEEecccccCCcEEcHHHHHHHHHc
Confidence 22222 23432 222 22356999999888865
No 78
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.65 E-value=4.4e-07 Score=88.35 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=50.9
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHH-hccc
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR-HCRY 113 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~-a~r~ 113 (413)
++++++.|+|||+|.||+.++++|.+.+.=|.|++..+.+. .++.+..+.++|++|++ +++.
T Consensus 22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~p----p~K~~~~~~~~Rl~M~~lAi~~ 84 (243)
T PRK06973 22 RRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQP----WQKADVSAAEHRLAMTRAAAAS 84 (243)
T ss_pred ceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcC----CCCCCCCCHHHHHHHHHHHHHh
Confidence 46889999999999999999999988764578888877764 23367889999999999 5664
No 79
>PLN02388 phosphopantetheine adenylyltransferase
Probab=98.65 E-value=3.5e-08 Score=91.97 Aligned_cols=62 Identities=21% Similarity=0.342 Sum_probs=53.3
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCC-CCCCCHHHHHHHHh
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG-RTVMNDEKKFRFQN 322 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg-~Pi~~~~eR~~~v~ 322 (413)
....|.+.|+||.+|.||..||++|.+++ .+.++||+++|+.....+. ..+.++++|.+.++
T Consensus 18 ~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a-~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~ 80 (177)
T PLN02388 18 SYGAVVLGGTFDRLHDGHRLFLKAAAELA-RDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVE 80 (177)
T ss_pred cCCeEEEEecCCccCHHHHHHHHHHHHhh-hcCEEEecCCChhhcccCCCcccCCHHHHHHHHH
Confidence 45689999999999999999999999996 4689999999998744332 36889999999987
No 80
>PLN02388 phosphopantetheine adenylyltransferase
Probab=98.64 E-value=5.1e-08 Score=90.86 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=54.2
Q ss_pred CCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCC-CCCCCCHHHHHHHHHh
Q psy5600 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKK-GRTVMNDIERYEAVRH 110 (413)
Q Consensus 47 ~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~K-g~Pv~~~eER~~~V~a 110 (413)
....|++-|+||.+|.||..+|++|.+++ .+.++||+.+|+.....+ ...+.+.++|.+.|+.
T Consensus 18 ~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a-~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~ 81 (177)
T PLN02388 18 SYGAVVLGGTFDRLHDGHRLFLKAAAELA-RDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEE 81 (177)
T ss_pred cCCeEEEEecCCccCHHHHHHHHHHHHhh-hcCEEEecCCChhhcccCCCcccCCHHHHHHHHHH
Confidence 45689999999999999999999999996 368999999999864433 2479999999999996
No 81
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=98.60 E-value=8.7e-08 Score=86.19 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=47.4
Q ss_pred eEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 262 VRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 262 ~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
++++..|+||.+|.||+.++++|.++| |+|+|+++.+. .|. |..+.++|+++++
T Consensus 2 kiai~~GSFDPih~GHl~ii~~A~~~~--D~v~v~v~~np----~K~-~~~s~e~R~~~l~ 55 (140)
T PRK13964 2 KIAIYPGSFDPFHKGHLNILKKALKLF--DKVYVVVSINP----DKS-NASDLDSRFKNVK 55 (140)
T ss_pred eEEEEeeeeCCCCHHHHHHHHHHHHhC--CEEEEEeccCC----CCC-CCCCHHHHHHHHH
Confidence 578999999999999999999999995 89999998763 233 7899999999986
No 82
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=98.56 E-value=2.1e-07 Score=86.34 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=72.4
Q ss_pred EEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHH-----
Q psy5600 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMEN----- 337 (413)
Q Consensus 263 iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~v----- 337 (413)
|++..|+||.+|.||+.+++.|+++++.|.|+|.++.+.. .|+.+..+.++|++|++.+-+-...+. |+..
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~m~~~~~~~~~~i~-v~~~e~~~~ 76 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPP---HKPPKPASFEHRLEMLKLAIEDNPKFE-VSDIEIKRD 76 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCHHHHHHHHHHHHcCCCCEE-EeHHHHhCC
Confidence 4678899999999999999999999755999998877643 344678899999999973222111111 1110
Q ss_pred hccchhhhhHhHHhhchhhhccceeeeecCCCc-cchhhhhHHHh
Q psy5600 338 IGERRVDMIQKWEEKSRDIIDTFLLLFGREGRL-KHMWNEGKGKF 381 (413)
Q Consensus 338 v~~~~~d~~~~~e~~~~Dii~~f~~~~G~Dw~~-~~~~~~~k~~~ 381 (413)
-+..+.+.+..+.+.-|+ ..|.+++|.|--. -+.|...++-+
T Consensus 77 ~~~~t~~tl~~l~~~~p~--~~~~~liG~D~l~~~~~W~~~~~i~ 119 (192)
T cd02165 77 GPSYTIDTLEELRERYPN--AELYFIIGSDNLIRLPKWYDWEELL 119 (192)
T ss_pred CCCCHHHHHHHHHHhccC--CCEEEEEcHHHhhhcccccCHHHHH
Confidence 112334445556555554 2456778877432 35566664443
No 83
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.55 E-value=1.7e-07 Score=97.01 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=57.6
Q ss_pred CCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcc-----cccCCCCCCCCHHHHHHHHHh-ccccCceeec
Q psy5600 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDAL-----THRKKGRTVMNDIERYEAVRH-CRYVDEVVRD 120 (413)
Q Consensus 47 ~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~-----v~~~Kg~Pv~~~eER~~~V~a-~r~VDeVvi~ 120 (413)
..+++++.|+|||+|.||+.++++|.+++ |.|+|+|.++.. ....|.+..++.++|++||+. ++..++|.+.
T Consensus 51 ~~~~~v~~G~FdP~H~GH~~lI~~A~~~~--d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v~ 128 (399)
T PRK08099 51 MKKIGVVFGKFYPLHTGHIYLIQRACSQV--DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKIH 128 (399)
T ss_pred cCcEEEEEEecCCCCHHHHHHHHHHHHHC--CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 44689999999999999999999999997 689998888752 111223578999999999995 5777776654
No 84
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.50 E-value=3.4e-07 Score=92.74 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=50.2
Q ss_pred ccceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 259 SRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 259 ~~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
.+.++++..|+||.||.||+.++++|.+.| |+|+|++.|.......| ..++.++|++|++
T Consensus 4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~--d~l~v~i~s~~~~~~~~--~~~~~~~R~~mi~ 63 (340)
T PRK05379 4 RRYDYLVFIGRFQPFHNGHLAVIREALSRA--KKVIVLIGSADLARSIK--NPFSFEERAQMIR 63 (340)
T ss_pred ccceEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEEccCCCCCcCC--CCCCHHHHHHHHH
Confidence 456789999999999999999999999995 89999998764433322 3479999999987
No 85
>PRK07143 hypothetical protein; Provisional
Probab=98.46 E-value=4.2e-07 Score=90.21 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=70.7
Q ss_pred eccceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhh-cCCCCCCCHHHHHHHHhhHHHHHhhhhhHHH
Q psy5600 258 TSRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHR-KKGRTVMNDEKKFRFQNKIEEFKDRSKRVME 336 (413)
Q Consensus 258 ~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~-~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~ 336 (413)
...+..|++-|.||-+|.||..+|++|++. ++.++|...++....- .+.+++++.++|+++++ ++. ||.
T Consensus 12 ~~~~~~vvaiG~FDGvH~GHq~Ll~~a~~~--~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~-------~~G-vd~ 81 (279)
T PRK07143 12 FKFEKPTFVLGGFESFHLGHLELFKKAKES--NDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLA-------NLG-FKN 81 (279)
T ss_pred CCCCCeEEEEccCCcCCHHHHHHHHHHHHC--CCcEEEEEeCChHHhcccCcccCCCHHHHHHHHH-------HCC-CCE
Confidence 345678999999999999999999999998 6899998888755421 12236899999999998 432 343
Q ss_pred Hhcc---------chhhhhHhHHhhchhhhccceeeeecCCCcc
Q psy5600 337 NIGE---------RRVDMIQKWEEKSRDIIDTFLLLFGREGRLK 371 (413)
Q Consensus 337 vv~~---------~~~d~~~~~e~~~~Dii~~f~~~~G~Dw~~~ 371 (413)
++.. ...++++.+.++.+.. ++.|.||+.+
T Consensus 82 ~~~~~F~~~~a~ls~e~Fi~~ll~l~~~~-----iVvG~Df~FG 120 (279)
T PRK07143 82 IILLDFNEELQNLSGNDFIEKLTKNQVSF-----FVVGKDFRFG 120 (279)
T ss_pred EEEeCCCHHHhCCCHHHHHHHHHhcCCCE-----EEECCCcccC
Confidence 3322 2234555443344444 8999999965
No 86
>PRK13671 hypothetical protein; Provisional
Probab=98.45 E-value=4.5e-07 Score=90.73 Aligned_cols=61 Identities=33% Similarity=0.435 Sum_probs=52.1
Q ss_pred CccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCC-CCCCCHHHHHHHHHhccccCceee
Q psy5600 55 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG-RTVMNDIERYEAVRHCRYVDEVVR 119 (413)
Q Consensus 55 G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg-~Pv~~~eER~~~V~a~r~VDeVvi 119 (413)
-+|||||.||+.++++|++.++.|++|+..+.+. . .|| +.+++.++|++|++.+ .||-|+.
T Consensus 7 aeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~-~--qrg~pa~~~~~~R~~ma~~~-G~DLViE 68 (298)
T PRK13671 7 AEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY-T--QRGEIAVASFEKRKKIALKY-GVDKVIK 68 (298)
T ss_pred eeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC-C--CCCCCCCCCHHHHHHHHHHc-CCCEEEe
Confidence 4899999999999999999877789998877775 2 344 4577999999999998 7999995
No 87
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.38 E-value=7.5e-07 Score=84.36 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=52.0
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHh-ccc
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRH-CRY 113 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a-~r~ 113 (413)
....++-|-|.|||.||+.+|++|.+.+ |+|||||.|....... +--|+..||.+|++. ++.
T Consensus 4 yd~~v~iGRFQPfH~GHl~~I~~al~~~--devII~IGSA~~s~t~--~NPFTa~ER~~MI~~aL~e 66 (196)
T PRK13793 4 FDYLVFIGRFQPFHLAHMQTIEIALQQS--RYVILALGSAQMERNI--KNPFLAIEREQMILSNFSL 66 (196)
T ss_pred eeEEEEEecCCCCcHHHHHHHHHHHHhC--CEEEEEEccCCCCCCC--CCCCCHHHHHHHHHHhcch
Confidence 3578999999999999999999999997 7999999997544332 357999999999995 553
No 88
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=98.35 E-value=8.1e-07 Score=82.84 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=45.7
Q ss_pred EEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 264 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 264 V~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
++..|+||.+|.||+.++++|.+.| |+|+|+|.+..... .+. +.++.++|++|++
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~--~~vii~i~s~~~~~-~~~-~p~~~~eR~~mi~ 56 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKA--KKVIILIGSARTAR-NIK-NPWTSEEREVMIE 56 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC--CeEEEEeCCCCCCC-CCC-CCcCHHHHHHHHH
Confidence 4678999999999999999999996 69999998775432 222 5579999999997
No 89
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.33 E-value=1.8e-06 Score=81.06 Aligned_cols=112 Identities=12% Similarity=0.091 Sum_probs=72.6
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCC-CCCCCHHHHHHHHhhHHHHHhhhhhHHHHh
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG-RTVMNDEKKFRFQNKIEEFKDRSKRVMENI 338 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg-~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv 338 (413)
.++|++..|+||.+|.||+.++++|.+.++-|.+++..+.... +|. +...+.++|++|++. +++..+.+.
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~R~~m~~~------a~~~~~~~~ 73 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPP---HKPQKPLAPLEHRLAMLEL------AIADNPRFS 73 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHH------HhcCCCceE
Confidence 4578999999999999999999999997645888888876652 233 368899999999872 222111100
Q ss_pred ----------ccchhhhhHhHHhhchhhhccceeeeecCCCcc-chhhhhHHHhh
Q psy5600 339 ----------GERRVDMIQKWEEKSRDIIDTFLLLFGREGRLK-HMWNEGKGKFL 382 (413)
Q Consensus 339 ----------~~~~~d~~~~~e~~~~Dii~~f~~~~G~Dw~~~-~~~~~~k~~~~ 382 (413)
...+.|-++.+.+.-|+. .|.+++|.|--.. +.|...++-+.
T Consensus 74 v~~~E~~~~~~syT~~tl~~l~~~~p~~--~~~fiiG~D~l~~l~~W~~~~~i~~ 126 (203)
T PRK00071 74 VSDIELERPGPSYTIDTLRELRARYPDV--ELVFIIGADALAQLPRWKRWEEILD 126 (203)
T ss_pred EeHHHHhCCCCCCHHHHHHHHHHHCCCC--cEEEEEcHHHhhhcccccCHHHHHH
Confidence 112334445555544443 4557788774332 55666655444
No 90
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=98.31 E-value=1.1e-06 Score=80.11 Aligned_cols=56 Identities=25% Similarity=0.265 Sum_probs=47.1
Q ss_pred EEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 263 iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
+++..|+||.+|.||+.++++|.++| |.|+|++++...- ...++.++.++|++|++
T Consensus 1 igl~~G~F~P~H~GHl~li~~a~~~~--d~v~vi~~~~~~~--~~~~~~~~~~~R~~mi~ 56 (158)
T cd02167 1 IGIVFGKFAPLHTGHVYLIYKALSQV--DELLIIVGSDDTR--DDARTGLPLEKRLRWLR 56 (158)
T ss_pred CEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCcc--cccCCCCCHHHHHHHHH
Confidence 35678999999999999999999995 8999999987732 12256779999999997
No 91
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=98.29 E-value=1.4e-06 Score=79.77 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=48.8
Q ss_pred ceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 261 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 261 ~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
++++...|+||.++.||+.++++|.+++ |.|||+|.-.. .++|.++.+||.++++
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~F--d~viVaV~~np-----~K~plFsleER~~l~~ 56 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALF--DEVIVAVAINP-----SKKPLFSLEERVELIR 56 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhc--cEEEEEEEeCC-----CcCCCcCHHHHHHHHH
Confidence 5788899999999999999999999996 89999997654 2369999999999987
No 92
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.26 E-value=1.5e-06 Score=80.77 Aligned_cols=63 Identities=25% Similarity=0.250 Sum_probs=53.9
Q ss_pred CCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHH-hcc
Q psy5600 46 SRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR-HCR 112 (413)
Q Consensus 46 ~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~-a~r 112 (413)
.+|+++++-|.|-|+|.||+.++++|.+.. |+|+|+|.|+...... +--|+..||..|++ +++
T Consensus 1 ~~~~rgv~~GRFqP~H~GHl~vi~~al~~v--DeliI~iGSa~~~~t~--~nPfTagER~~mi~~~L~ 64 (172)
T COG1056 1 SRMKRGVYFGRFQPLHTGHLYVIKRALSKV--DELIIVIGSAQESHTL--KNPFTAGERIPMIRDRLR 64 (172)
T ss_pred CCceEEEEEeccCCccHhHHHHHHHHHHhC--CEEEEEEccCcccccc--cCCCCccchhHHHHHHHH
Confidence 368899999999999999999999999985 8999999999754433 34688999999999 565
No 93
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=98.20 E-value=5.7e-06 Score=82.50 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=83.9
Q ss_pred EEEcCccCCCChHHHHHHHHHhhcCC---CCEEEEEEecCcc--cccCCCCCCCCHHHHHHHHHhccccCceeecCCCC-
Q psy5600 51 VYADGIYDMFHQGHSRQLMQAKNVFP---NVYLIVGVCSDAL--THRKKGRTVMNDIERYEAVRHCRYVDEVVRDAPWE- 124 (413)
Q Consensus 51 V~~~G~FDlfH~GHi~~L~qAk~lf~---gd~LIVGV~sDe~--v~~~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ap~~- 124 (413)
+++=|.||-+|.||..+|++|++... ...+++-...... ....+.+++++.+||.++++.+. ||.+++- ||+
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~G-vd~~~~~-~F~~ 78 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIKG-VEQLLVV-VFDE 78 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHcC-CCEEEEe-CCCH
Confidence 46779999999999999999886521 1233333333321 22122234999999999999975 9998875 443
Q ss_pred -----ChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccCcccc
Q psy5600 125 -----TDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGT 199 (413)
Q Consensus 125 -----l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~ 199 (413)
...+|++++=+. +. ++..|+.|.|.....++.
T Consensus 79 ~~a~ls~e~Fi~~~l~~-------------------------------------~l------~~~~ivvG~Df~FG~~~~ 115 (288)
T TIGR00083 79 EFANLSALQFIDQLIVK-------------------------------------HL------HVKFLVVGDDFRFGHDRQ 115 (288)
T ss_pred HHHcCCHHHHHHHHHHh-------------------------------------cc------CCcEEEECCCccCCCCCC
Confidence 335566554200 00 145677788887655544
Q ss_pred chHHHHHhC----CeEEE----cCCCCCCCHHHHHHHHHh
Q psy5600 200 DVYAHLKAR----GMFVA----TQRTEGVSTSDIVARIVR 231 (413)
Q Consensus 200 d~y~~~ke~----Gi~v~----i~RT~gVSTSdII~RI~~ 231 (413)
--++.|++. |..+. ......+|||.|.+-|..
T Consensus 116 G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~ 155 (288)
T TIGR00083 116 GDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKN 155 (288)
T ss_pred CCHHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHc
Confidence 445666665 43221 122256999999888764
No 94
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.15 E-value=3.7e-06 Score=84.76 Aligned_cols=57 Identities=19% Similarity=0.111 Sum_probs=48.5
Q ss_pred ceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhc-CCCCCCCHHHHHHHHh
Q psy5600 261 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRK-KGRTVMNDEKKFRFQN 322 (413)
Q Consensus 261 ~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~-Kg~Pi~~~~eR~~~v~ 322 (413)
+++++..|+||.+|.||+.++++|.+++ |+|+|.+++.. .. |.++.++.++|++|++
T Consensus 1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~--d~v~v~~~~~~---~~~~~~~~~~~~~R~~~l~ 58 (325)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKV--DELHIVVGSLF---YDSKAKRPPPVQDRLRWLR 58 (325)
T ss_pred CcEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCC---cCccCCCCCCHHHHHHHHH
Confidence 3588899999999999999999999994 89999998721 22 3468889999999997
No 95
>KOG3351|consensus
Probab=98.13 E-value=2.3e-06 Score=83.42 Aligned_cols=67 Identities=30% Similarity=0.352 Sum_probs=56.7
Q ss_pred CCCCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCC-CCCCHHHHHHHHHh
Q psy5600 43 NNASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGR-TVMNDIERYEAVRH 110 (413)
Q Consensus 43 ~~~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~-Pv~~~eER~~~V~a 110 (413)
+.+.+..++.+.||||=+|.||--+|..|..+. .|.|||||+.|+.+.+++-+ -+-|.++|++-|..
T Consensus 137 ~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la-~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~ 204 (293)
T KOG3351|consen 137 GPANKFMVVALGGTFDRLHDGHKVLLSVAAELA-SDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSN 204 (293)
T ss_pred cchhcceeEEeccchhhhccchHHHHHHHHHHh-hceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHH
Confidence 344456789999999999999999999999997 69999999999988754322 58899999998875
No 96
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=98.12 E-value=7.5e-06 Score=78.73 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=54.4
Q ss_pred EEEEcCccCCCChHHHHHHHHHhhcCCCCE--EEEEE----ecCcccccCCCCCCCCHHHHHHHHH-hccccCceeecC-
Q psy5600 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVY--LIVGV----CSDALTHRKKGRTVMNDIERYEAVR-HCRYVDEVVRDA- 121 (413)
Q Consensus 50 ~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~--LIVGV----~sDe~v~~~Kg~Pv~~~eER~~~V~-a~r~VDeVvi~a- 121 (413)
+.++.|+|||+|.||+.++++|.+.++-+. .+|.+ ..+. .++....+.++|++|++ ++...+.+.+..
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~----~~k~~~~~~~~Rl~Ml~lai~~~~~~~v~~~ 77 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDA----YGKKGLASAKHRVAMCRLAVQSSDWIRVDDW 77 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccC----CCCCCCCCHHHHHHHHHHHHccCCCEEEEeh
Confidence 578899999999999999999987764333 23222 2221 23367889999999999 677666655532
Q ss_pred -----CCCChHHHHHHhc
Q psy5600 122 -----PWETDDEFLAKHK 134 (413)
Q Consensus 122 -----p~~l~~dfi~~~~ 134 (413)
.+..|.+-|+.++
T Consensus 78 E~~~~~~syT~~TL~~l~ 95 (225)
T cd09286 78 ESLQPEWMRTAKVLRHHR 95 (225)
T ss_pred hccCCccccHHHHHHHHH
Confidence 1223555566554
No 97
>KOG3351|consensus
Probab=98.09 E-value=3.4e-06 Score=82.20 Aligned_cols=62 Identities=26% Similarity=0.329 Sum_probs=53.5
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCC-CCCCHHHHHHHHh
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGR-TVMNDEKKFRFQN 322 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~-Pi~~~~eR~~~v~ 322 (413)
+-.++.++||||-+|.||--||..|..++ .|.|||||+.|++..+++-+ -+-|.++|++-|.
T Consensus 141 ~~~~~alGGTFDrLH~gHKvLLs~aa~la-~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~ 203 (293)
T KOG3351|consen 141 KFMVVALGGTFDRLHDGHKVLLSVAAELA-SDRLVVGVTDDELLKKKVLKELIEPIEERKEHVS 203 (293)
T ss_pred cceeEEeccchhhhccchHHHHHHHHHHh-hceEEEEecChHHHHHhHHHHHhhhHHHHHHHHH
Confidence 44588999999999999999999999997 69999999999999765544 4778899988775
No 98
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=98.04 E-value=1.5e-05 Score=74.35 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=68.1
Q ss_pred EccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCC-CCCCCHHHHHHHHhh-HHHHHhhhhhHH--HH---h
Q psy5600 266 ADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG-RTVMNDEKKFRFQNK-IEEFKDRSKRVM--EN---I 338 (413)
Q Consensus 266 ~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg-~Pi~~~~eR~~~v~~-i~~v~e~~k~Vd--~v---v 338 (413)
.+|+||.+|.||+.++++|.+.++-|.|++..+.+.- .|. ....+.++|++|++. ++... .+ .|+ |. -
T Consensus 2 ~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p---~k~~~~~~~~~~R~~m~~~a~~~~~-~~-~v~~~E~~~~~ 76 (193)
T TIGR00482 2 FGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPP---HKKTYEAASSHHRLAMLKLAIEDNP-KF-EVDDFEIKRGG 76 (193)
T ss_pred ccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHHhcCC-CE-EEeHHHHhCCC
Confidence 4799999999999999999998755888887776653 243 345799999999972 11110 10 111 10 0
Q ss_pred ccchhhhhHhHHhhchhhhccceeeeecCCCcc-chhhhhHHHhh
Q psy5600 339 GERRVDMIQKWEEKSRDIIDTFLLLFGREGRLK-HMWNEGKGKFL 382 (413)
Q Consensus 339 ~~~~~d~~~~~e~~~~Dii~~f~~~~G~Dw~~~-~~~~~~k~~~~ 382 (413)
+..+.|-+..+.+.-|+. .|.+++|.|--.. +.|...++-+.
T Consensus 77 ~syT~~tl~~l~~~~p~~--~~~~iiG~D~l~~l~~W~~~~~i~~ 119 (193)
T TIGR00482 77 PSYTIDTLKHLKKKYPDV--ELYFIIGADALRSFPLWKDWQELLE 119 (193)
T ss_pred CCCHHHHHHHHHHHCCCC--eEEEEEcHHHhhhhccccCHHHHHH
Confidence 112445455555544443 4557788874432 45666655544
No 99
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.03 E-value=2.2e-05 Score=72.54 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=43.5
Q ss_pred ceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 261 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 261 ~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
++|++..|+||.+|.||+.++++++.+ |+|++..+.. ...+ ++..+.++|++|++
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~~~~---d~v~~vP~~~---~~~~-k~~~~~~~R~~M~~ 56 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESLSHF---DLVLLVPSIA---HAWG-KTMLDYETRCQLVD 56 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHhhcC---CEEEEEECCC---Cccc-CCCCCHHHHHHHHH
Confidence 468899999999999999999997533 8888886552 1122 36779999999997
No 100
>PRK13671 hypothetical protein; Provisional
Probab=98.00 E-value=1.3e-05 Score=80.40 Aligned_cols=88 Identities=30% Similarity=0.378 Sum_probs=66.5
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCC-CCCHHHHHHHHhhHHHHHhhhhhHHHHh--cc----
Q psy5600 268 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRT-VMNDEKKFRFQNKIEEFKDRSKRVMENI--GE---- 340 (413)
Q Consensus 268 G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~P-i~~~~eR~~~v~~i~~v~e~~k~Vd~vv--~~---- 340 (413)
-+||.||.||+.++++|++.++.|.+|+..+.+. -.||.| +++..+|++|+. .. .||-|| |.
T Consensus 7 aeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~---~qrg~pa~~~~~~R~~ma~-------~~-G~DLViELP~~~a~ 75 (298)
T PRK13671 7 AEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY---TQRGEIAVASFEKRKKIAL-------KY-GVDKVIKLPFEYAT 75 (298)
T ss_pred eeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC---CCCCCCCCCCHHHHHHHHH-------Hc-CCCEEEeccHHHHh
Confidence 4899999999999999999887799999887776 356665 669999999986 32 677776 21
Q ss_pred chhh-----hhHhHHhhchhhhccceeeeecCCCcc
Q psy5600 341 RRVD-----MIQKWEEKSRDIIDTFLLLFGREGRLK 371 (413)
Q Consensus 341 ~~~d-----~~~~~e~~~~Dii~~f~~~~G~Dw~~~ 371 (413)
...+ -+..+....-|. +.||.+|..-
T Consensus 76 ~sAe~FA~gaV~lL~~lgvd~-----l~FGsE~~d~ 106 (298)
T PRK13671 76 QAAHIFAKGAIKKLNKEKIDK-----LIFGSESNDI 106 (298)
T ss_pred hchHHHHHHHHHHHHHcCCCE-----EEECCCCCCH
Confidence 1112 246677777666 8999998653
No 101
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=97.99 E-value=3.8e-05 Score=70.07 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=51.0
Q ss_pred CCCeEEEEcCccCCCChHHHHHHHHHhhcCC-CCEEEEEEecC--cc-ccc-CC-CCCCCCHHHHHHHHHhccccCceee
Q psy5600 46 SRKVRVYADGIYDMFHQGHSRQLMQAKNVFP-NVYLIVGVCSD--AL-THR-KK-GRTVMNDIERYEAVRHCRYVDEVVR 119 (413)
Q Consensus 46 ~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~-gd~LIVGV~sD--e~-v~~-~K-g~Pv~~~eER~~~V~a~r~VDeVvi 119 (413)
.....+++=|.||-+|.||-.+|++|.++.. .+...+.++=| .. +-+ .+ ...+++.+||.++++.+. ||.+++
T Consensus 3 ~~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~G-vd~~~~ 81 (157)
T PF06574_consen 3 NNKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLG-VDYVIV 81 (157)
T ss_dssp T-S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTT-ESEEEE
T ss_pred CCCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcC-CCEEEE
Confidence 3456799999999999999999999987641 12233333322 21 211 11 236999999999999965 898876
Q ss_pred cCCCC------ChHHHHHHh
Q psy5600 120 DAPWE------TDDEFLAKH 133 (413)
Q Consensus 120 ~ap~~------l~~dfi~~~ 133 (413)
. ||+ ...+|++.+
T Consensus 82 ~-~F~~~~~~ls~~~Fi~~i 100 (157)
T PF06574_consen 82 I-PFTEEFANLSPEDFIEKI 100 (157)
T ss_dssp E--CCCHHCCS-HHHHHHHH
T ss_pred e-cchHHHHcCCHHHHHHHH
Confidence 4 332 457888773
No 102
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=97.96 E-value=1.6e-05 Score=73.70 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=44.6
Q ss_pred EEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 263 iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
+++..|.||.+|.||+.++++|.+.| |+|+|++.+-. ...+.++.++.++|++|++
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~--d~v~v~i~s~~--~~~~~~~p~~~~~R~~mi~ 57 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEV--DELIIGIGSAQ--ESHTLKNPFTAGERILMIR 57 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhC--CEEEEEecCCC--CCCCCCCCCCHHHHHHHHH
Confidence 46779999999999999999999984 89999986533 1223344468899999987
No 103
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=97.96 E-value=3.3e-05 Score=75.29 Aligned_cols=119 Identities=19% Similarity=0.303 Sum_probs=73.1
Q ss_pred ccceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhh-HHHHH-hhhh-hHH
Q psy5600 259 SRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNK-IEEFK-DRSK-RVM 335 (413)
Q Consensus 259 ~~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~-i~~v~-e~~k-~Vd 335 (413)
..++|++.+|+||.+|.||+.+.++|.+.++-|.|++.-+.+.. +| .+..+.++|++|++. ++... ...+ .|+
T Consensus 20 ~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp---~K-~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~ 95 (243)
T PRK06973 20 RPRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPW---QK-ADVSAAEHRLAMTRAAAASLVLPGVTVRVA 95 (243)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCC---CC-CCCCCHHHHHHHHHHHHHhccCCCceEEEe
Confidence 45678899999999999999999999987755888888776532 33 567799999999972 11110 0000 111
Q ss_pred --HH-h--ccchhhhhHhHHhhc-hhhhccceeeeecCCCcc-chhhhhHHHhhh
Q psy5600 336 --EN-I--GERRVDMIQKWEEKS-RDIIDTFLLLFGREGRLK-HMWNEGKGKFLQ 383 (413)
Q Consensus 336 --~v-v--~~~~~d~~~~~e~~~-~Dii~~f~~~~G~Dw~~~-~~~~~~k~~~~~ 383 (413)
|. . +..+.|-+..+++.- |+. .|.+++|.|--.. +.|...++-+..
T Consensus 96 ~~Ei~~~g~syTidTL~~l~~~~~p~~--~~~fiiG~D~l~~l~~W~~~~~L~~~ 148 (243)
T PRK06973 96 TDEIEHAGPTYTVDTLARWRERIGPDA--SLALLIGADQLVRLDTWRDWRRLFDY 148 (243)
T ss_pred HhhhhCCCCCcHHHHHHHHHHHcCCCC--CEEEEEchhhHhhcCCcccHHHHHHh
Confidence 10 0 112344445555533 442 4567788874333 556666554443
No 104
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=97.96 E-value=3e-05 Score=78.46 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=71.1
Q ss_pred ceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCC-CCCCHHHHHHHHhhHHHHHhhhhhH--H--
Q psy5600 261 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGR-TVMNDEKKFRFQNKIEEFKDRSKRV--M-- 335 (413)
Q Consensus 261 ~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~-Pi~~~~eR~~~v~~i~~v~e~~k~V--d-- 335 (413)
++|++.+|+||.+|.||+.++++|.+.++-|.|++..+.+. -.|.. +..+.++|++|++. .+++ ..++ +
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~~~~~~~~~R~~m~~~--a~~~-~~~~~v~~~ 74 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKKQKASNGEHRLNMLKL--ALKN-LPKMEVSDF 74 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHH--HHhh-CCCeEEeHH
Confidence 36888999999999999999999998764588888776544 34544 45556999999962 1111 0110 0
Q ss_pred HHh---ccchhhhhHhHHhhchhhhccceeeeecCCCcc-chhhhhHHHhhh
Q psy5600 336 ENI---GERRVDMIQKWEEKSRDIIDTFLLLFGREGRLK-HMWNEGKGKFLQ 383 (413)
Q Consensus 336 ~vv---~~~~~d~~~~~e~~~~Dii~~f~~~~G~Dw~~~-~~~~~~k~~~~~ 383 (413)
|+- +..+.|-+..+.+.-|+. .|.+++|.|.-.. +.|...++-+..
T Consensus 75 E~~~~~~syt~~tl~~l~~~~p~~--~~~~iiG~D~~~~l~~W~~~~~l~~~ 124 (342)
T PRK07152 75 EIKRQNVSYTIDTIKYFKKKYPND--EIYFIIGSDNLEKFKKWKNIEEILKK 124 (342)
T ss_pred HHhCCCCCcHHHHHHHHHHhCCCC--cEEEEecHHHhhhcccccCHHHHHHh
Confidence 000 112334445555544542 4567889886544 556666554443
No 105
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=97.92 E-value=5.2e-05 Score=76.31 Aligned_cols=140 Identities=17% Similarity=0.138 Sum_probs=87.3
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCCEE-EEEEecCcc---cccCCCC--CCCCHHHHHHHHHhccccCceeecC
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYL-IVGVCSDAL---THRKKGR--TVMNDIERYEAVRHCRYVDEVVRDA 121 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~L-IVGV~sDe~---v~~~Kg~--Pv~~~eER~~~V~a~r~VDeVvi~a 121 (413)
...|++=|.||=+|.||-.+|++|++.....-+ .+.++=+.- +-..... -+++.++|.+.++.+. ||.+++.
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~g-vd~~~v~- 92 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYG-VDALVVL- 92 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcC-CcEEEEE-
Confidence 456899999999999999999999854311122 222222221 1111111 2899999999999987 9988875
Q ss_pred CCC------ChHHHHHHhccCCCcccccCCCCCCCChhHHHhhhccccccccccccccccCCCccceeeeeecCCCCccC
Q psy5600 122 PWE------TDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMS 195 (413)
Q Consensus 122 p~~------l~~dfi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~ 195 (413)
+|+ ...+|++.+- +.. ++..++.|.|....
T Consensus 93 ~F~~~fa~ls~~~Fv~~lv----------------------~~l----------------------~~k~ivvG~DF~FG 128 (304)
T COG0196 93 DFDLEFANLSAEEFVELLV----------------------EKL----------------------NVKHIVVGFDFRFG 128 (304)
T ss_pred eCCHhHhhCCHHHHHHHHH----------------------hcc----------------------CCcEEEEecccccC
Confidence 333 4466766321 000 14567778887765
Q ss_pred ccccchHHHHHhCCe----EEEcC--CCC--CCCHHHHHHHHHhch
Q psy5600 196 EFGTDVYAHLKARGM----FVATQ--RTE--GVSTSDIVARIVRDY 233 (413)
Q Consensus 196 ~~~~d~y~~~ke~Gi----~v~i~--RT~--gVSTSdII~RI~~~~ 233 (413)
.+...-.+.|+..|- +..++ ... .+|||.|.+-+.+..
T Consensus 129 k~~~g~~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~~gd 174 (304)
T COG0196 129 KGRQGNAELLRELGQKGFEVTIVPKINEEGIRISSTAIRQALREGD 174 (304)
T ss_pred CCCCCCHHHHHHhccCCceEEEeccEecCCcEEchHHHHHHHhcCC
Confidence 555555567777762 23332 223 499999988886543
No 106
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=97.87 E-value=3.7e-05 Score=74.30 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=44.7
Q ss_pred CCeEEEEcCccCCCChHHHHHHHHHhhcCCCCE-EEEEEecCcccccCCCCCCCCHHHHHHHHH-hccccC
Q psy5600 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVY-LIVGVCSDALTHRKKGRTVMNDIERYEAVR-HCRYVD 115 (413)
Q Consensus 47 ~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~-LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~-a~r~VD 115 (413)
...+.++.|+|||+|.||+.+++.|.+...-|. .+|++.--..-..+++....+.++|++|++ ++..-.
T Consensus 21 ~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~ 91 (236)
T PLN02945 21 TRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACEDSD 91 (236)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcCCC
Confidence 345678889999999999999998876542232 334332111111123346789999999998 565544
No 107
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.84 E-value=2.6e-05 Score=80.90 Aligned_cols=62 Identities=16% Similarity=0.092 Sum_probs=50.0
Q ss_pred ccceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhh-----hhhcCCCCCCCHHHHHHHHh
Q psy5600 259 SRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDAL-----THRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 259 ~~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~-----v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
.+++++.+.|.||.+|.||+.++++|.++| |.|+|+|.++.. .+..|.++.++.++|+++++
T Consensus 50 ~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~--d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~ 116 (399)
T PRK08099 50 QMKKIGVVFGKFYPLHTGHIYLIQRACSQV--DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLL 116 (399)
T ss_pred hcCcEEEEEEecCCCCHHHHHHHHHHHHHC--CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHH
Confidence 356789999999999999999999999995 788888887762 11222346788899999987
No 108
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=97.79 E-value=0.00012 Score=69.45 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=74.0
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCC-CCCCCHHHHHHHHhhHHHHHhhhhhHHHHh
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG-RTVMNDEKKFRFQNKIEEFKDRSKRVMENI 338 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg-~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv 338 (413)
+++++.-+|+||..|.||+.+.++|.+..+-|.|+.-.+.-. -+|. .+..+.++|++|++..-+=... -.|+...
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~---p~k~~~~~a~~~~R~~Ml~la~~~~~~-~~v~~~e 77 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVP---PHKKKKELASAEHRLAMLELAIEDNPR-FEVSDRE 77 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCC---CCCCCccCCCHHHHHHHHHHHHhcCCC-cceeHHH
Confidence 578999999999999999999999998775677766655443 3444 4788999999999721111111 0122111
Q ss_pred cc-----chhhhhHhHH-hhchhhhccceeeeecCCCcc-chhhhhHHHhh
Q psy5600 339 GE-----RRVDMIQKWE-EKSRDIIDTFLLLFGREGRLK-HMWNEGKGKFL 382 (413)
Q Consensus 339 ~~-----~~~d~~~~~e-~~~~Dii~~f~~~~G~Dw~~~-~~~~~~k~~~~ 382 (413)
.. .+.|-++.+. ++.||- .|.+++|.|--.+ +.|...++-+.
T Consensus 78 ~~r~g~sYT~dTl~~~~~~~~p~~--~~~fIiGaD~l~~l~~W~~~~ell~ 126 (197)
T COG1057 78 IKRGGPSYTIDTLEHLRQEYGPDV--ELYFIIGADNLASLPKWYDWDELLK 126 (197)
T ss_pred HHcCCCcchHHHHHHHHHHhCCCC--cEEEEEehHHhhhhhhhhhHHHHHH
Confidence 11 1334455565 666765 4567788874333 45655544443
No 109
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=97.69 E-value=0.00016 Score=68.61 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=46.4
Q ss_pred eEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 262 VRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 262 ~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
.+.+..|-|..||.||+++|++|.+.| |+|||||.|-...... +--++..||.+|+.
T Consensus 5 d~~v~iGRFQPfH~GHl~~I~~al~~~--devII~IGSA~~s~t~--~NPFTa~ER~~MI~ 61 (196)
T PRK13793 5 DYLVFIGRFQPFHLAHMQTIEIALQQS--RYVILALGSAQMERNI--KNPFLAIEREQMIL 61 (196)
T ss_pred eEEEEEecCCCCcHHHHHHHHHHHHhC--CEEEEEEccCCCCCCC--CCCCCHHHHHHHHH
Confidence 467788999999999999999999995 8999999995543332 23466789999986
No 110
>PRK13670 hypothetical protein; Provisional
Probab=97.65 E-value=0.00013 Score=75.58 Aligned_cols=80 Identities=25% Similarity=0.268 Sum_probs=59.1
Q ss_pred eEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhccccCceeecCCCC----
Q psy5600 49 VRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRDAPWE---- 124 (413)
Q Consensus 49 ~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ap~~---- 124 (413)
+++=+---||+||.||..+|++|+++.+. .++++|.+-..+.+.. +++++.++|++++..+. ||.|+.- |+.
T Consensus 2 k~~GIIaEfdg~H~GH~~~i~~a~~~a~~-~~~~~Vmp~~f~qrg~-p~i~~~~~R~~~a~~~G-vD~viel-pf~~a~~ 77 (388)
T PRK13670 2 KVTGIIVEYNPFHNGHLYHLNQAKKLTNA-DVTIAVMSGNFVQRGE-PAIVDKWTRAKMALENG-VDLVVEL-PFLYSVQ 77 (388)
T ss_pred ceeEEEeeeCCcCHHHHHHHHHHHHHHhC-CCcEEEecHHHhCCCC-CCCCCHHHHHHHHHHcC-CCEEEEe-CCchHhC
Confidence 34444456999999999999999998743 5666777777776532 56999999999999864 9999875 443
Q ss_pred ChHHHHHH
Q psy5600 125 TDDEFLAK 132 (413)
Q Consensus 125 l~~dfi~~ 132 (413)
...+|++.
T Consensus 78 sae~F~~~ 85 (388)
T PRK13670 78 SADFFAEG 85 (388)
T ss_pred CHHHHHHh
Confidence 33456553
No 111
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=97.61 E-value=0.00012 Score=74.54 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=46.7
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
++++....|+||.||.||+.++++|.++| |.|+|+|.. ..++.++.++|++|++
T Consensus 138 ~~~i~~~~g~fdP~t~GH~~li~~A~~~~--d~~~v~v~~-------~~~~~f~~~~R~~~v~ 191 (332)
T TIGR00124 138 GNKIGSIVMNANPFTNGHRYLIEQAARQC--DWLHLFVVK-------EDASLFSYDERFALVK 191 (332)
T ss_pred CCcEEEEEeCcCCCchHHHHHHHHHHHHC--CEEEEEEEe-------CCCCCCCHHHHHHHHH
Confidence 35889999999999999999999999996 788888852 1257999999999987
No 112
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=97.42 E-value=0.00015 Score=66.29 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=54.5
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCC--C-cEEEEEEcchhh-hhh-cCC-CCCCCHHHHHHHHhhHHHHHhhhhh
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFP--N-VYLIVGVCSDAL-THR-KKG-RTVMNDEKKFRFQNKIEEFKDRSKR 333 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~--g-d~LIVGV~sD~~-v~~-~Kg-~Pi~~~~eR~~~v~~i~~v~e~~k~ 333 (413)
.++.+++-|.||=+|.||..+|++|.+.+. + .-+++-...... +-+ .+. ..+++.++|+++++ + ..
T Consensus 4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~-------~-~G 75 (157)
T PF06574_consen 4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLE-------S-LG 75 (157)
T ss_dssp -S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHH-------H-TT
T ss_pred CCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHH-------H-cC
Confidence 467889999999999999999999887741 1 223344443332 222 122 35899999999998 3 23
Q ss_pred HHHHhccch---------hhhhHh-HH-hhchhhhccceeeeecCCCccch
Q psy5600 334 VMENIGERR---------VDMIQK-WE-EKSRDIIDTFLLLFGREGRLKHM 373 (413)
Q Consensus 334 Vd~vv~~~~---------~d~~~~-~e-~~~~Dii~~f~~~~G~Dw~~~~~ 373 (413)
||.++.-.. .|+++. +. +++.. .++.|.||+.+..
T Consensus 76 vd~~~~~~F~~~~~~ls~~~Fi~~iL~~~l~~~-----~ivvG~DfrFG~~ 121 (157)
T PF06574_consen 76 VDYVIVIPFTEEFANLSPEDFIEKILKEKLNVK-----HIVVGEDFRFGKN 121 (157)
T ss_dssp ESEEEEE-CCCHHCCS-HHHHHHHHCCCHCTEE-----EEEEETT-EESGG
T ss_pred CCEEEEecchHHHHcCCHHHHHHHHHHhcCCcc-----EEEEccCccCCCC
Confidence 554443321 223332 11 22222 3899999998853
No 113
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=97.32 E-value=0.00025 Score=70.90 Aligned_cols=95 Identities=17% Similarity=0.127 Sum_probs=57.3
Q ss_pred EEEccccccCChhHHHHHHHHHhcCC--C-cEEEEEEcchhh--hhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHh
Q psy5600 264 VYADGIYDMFHQGHSRQLMQAKNVFP--N-VYLIVGVCSDAL--THRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENI 338 (413)
Q Consensus 264 V~~~G~FDl~H~GHi~~L~~Ak~l~~--g-d~LIVGV~sD~~--v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv 338 (413)
+.+-|.||-+|.||..+|++|++.+. + .-+++-...... ....+..++++.++|+++++ ++ .||.++
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~-------~~-Gvd~~~ 72 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQ-------IK-GVEQLL 72 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHH-------Hc-CCCEEE
Confidence 36779999999999999999886531 1 344555544332 22222224889999999998 32 344333
Q ss_pred ccc---------hhhhhHhHH--hhchhhhccceeeeecCCCcc
Q psy5600 339 GER---------RVDMIQKWE--EKSRDIIDTFLLLFGREGRLK 371 (413)
Q Consensus 339 ~~~---------~~d~~~~~e--~~~~Dii~~f~~~~G~Dw~~~ 371 (413)
.-. ..++++.+- +++... ++.|.||+.+
T Consensus 73 ~~~F~~~~a~ls~e~Fi~~~l~~~l~~~~-----ivvG~Df~FG 111 (288)
T TIGR00083 73 VVVFDEEFANLSALQFIDQLIVKHLHVKF-----LVVGDDFRFG 111 (288)
T ss_pred EeCCCHHHHcCCHHHHHHHHHHhccCCcE-----EEECCCccCC
Confidence 322 122343221 233333 8899999865
No 114
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=97.30 E-value=0.00031 Score=65.53 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=49.0
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
++++.+.-|-|-.+|.||++++++|.+. -|.|||+|.||+.....+. -++..||..|++
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~--vDeliI~iGSa~~~~t~~n--PfTagER~~mi~ 60 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSK--VDELIIVIGSAQESHTLKN--PFTAGERIPMIR 60 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHh--CCEEEEEEccCcccccccC--CCCccchhHHHH
Confidence 5678888999999999999999999999 6999999999986544332 344578888887
No 115
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=97.24 E-value=0.00035 Score=67.24 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=39.5
Q ss_pred EEEEccccccCChhHHHHHHHHHhcCCCcE--EEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVY--LIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 263 iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~--LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
+++.+|+||.+|.||+.++++|.+.++-+. .+|.+.=-..-...+..+..+.++|++|++
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~ 63 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCR 63 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHH
Confidence 566789999999999999999987653343 222211001101122256778999999997
No 116
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=97.20 E-value=0.0007 Score=67.95 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=44.8
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
.++++-+-|+||.+|.||+.++++|.+++ |.++|.+.+. ..+.++.++|++|++
T Consensus 113 ~~~~~~~~~~FDPiH~GHl~ii~~a~~~~--d~~~V~i~~~-------~~~~~~~e~R~~ml~ 166 (297)
T cd02169 113 GKKIAAIVMNANPFTLGHRYLVEKAAAEN--DWVHLFVVSE-------DKSLFSFADRFKLVK 166 (297)
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHhhC--CeEEEEEEcC-------CCCCCCHHHHHHHHH
Confidence 46788889999999999999999999996 5666666441 357889999999987
No 117
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=97.08 E-value=0.0014 Score=61.52 Aligned_cols=56 Identities=27% Similarity=0.312 Sum_probs=48.2
Q ss_pred cCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHh-ccccCceeecC
Q psy5600 57 YDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRH-CRYVDEVVRDA 121 (413)
Q Consensus 57 FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a-~r~VDeVvi~a 121 (413)
=.|||.||.-|+++|++.+ |.|.|=|-+.+ +..|+.++|++||+. ++..++|.+-.
T Consensus 8 aNPFT~GH~yLiE~Aa~~~--d~l~vFVV~eD-------~S~Fpf~~R~~LVk~G~~~L~NV~V~~ 64 (182)
T PF08218_consen 8 ANPFTLGHRYLIEQAAKEC--DWLHVFVVSED-------RSLFPFADRYELVKEGTADLPNVTVHP 64 (182)
T ss_pred CCCCccHHHHHHHHHHHhC--CEEEEEEEccc-------cCcCCHHHHHHHHHHHhCcCCCEEEEc
Confidence 3699999999999999996 78888666654 689999999999995 89999988743
No 118
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=97.03 E-value=0.00091 Score=64.70 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=41.5
Q ss_pred ccceEEEEccccccCChhHHHHHHHHHhcCCCcE-EEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 259 SRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVY-LIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 259 ~~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~-LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
+...+.+.+|+||.+|.||+.+.+.|.+...-|. .+|++.--..-..++.....+.++|++|++
T Consensus 20 ~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~ 84 (236)
T PLN02945 20 RTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQ 84 (236)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccccCCCCCHHHHHHHHH
Confidence 4456777788999999999999999887543233 233322111111122235678999999987
No 119
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=96.87 E-value=0.002 Score=60.27 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=37.4
Q ss_pred ccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 267 DGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 267 ~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
--.||.+|.||+.++++|.+++ |.++|++.+. ..+.++.++|++|++
T Consensus 5 ~~~~DPiH~GHl~i~~~a~~~~--d~~~V~v~p~-------~~~~~s~e~R~~Mi~ 51 (182)
T smart00764 5 VMNANPFTLGHRYLVEQAAAEC--DWVHLFVVSE-------DASLFSFDERFALVK 51 (182)
T ss_pred EECCCCCCHHHHHHHHHHHHHC--CceEEEEEeC-------CCCCCCHHHHHHHHH
Confidence 4579999999999999999997 4555555442 235779999999997
No 120
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=96.83 E-value=0.0019 Score=66.42 Aligned_cols=63 Identities=24% Similarity=0.323 Sum_probs=50.0
Q ss_pred CccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhccccCceeec
Q psy5600 55 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRD 120 (413)
Q Consensus 55 G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~r~VDeVvi~ 120 (413)
--|||||.||.-+|++|+.+|.+|..++++..| ++++ .-+++++-.+|.+|..++ .+|.||+.
T Consensus 8 ~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~qR-gepai~~k~~r~~~aL~~-g~D~VIel 70 (358)
T COG1323 8 AEYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FTQR-GEPAIGHKWERKKMALEG-GADLVIEL 70 (358)
T ss_pred eecCcccccHHHHHHHHHHhccCCceEEeeecc-hhhc-CCCccccHHHHHhhhhhc-CceEEEEc
Confidence 458999999999999999988666677776666 5543 225799999999998874 38888874
No 121
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=96.82 E-value=0.0016 Score=67.66 Aligned_cols=85 Identities=24% Similarity=0.281 Sum_probs=39.9
Q ss_pred EcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCC-CCCCCHHHHHHHHHhccccCceeecC-CCCC-----
Q psy5600 53 ADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG-RTVMNDIERYEAVRHCRYVDEVVRDA-PWET----- 125 (413)
Q Consensus 53 ~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg-~Pv~~~eER~~~V~a~r~VDeVvi~a-p~~l----- 125 (413)
+---|.|||.||+-+|++||+..+.| .+|+|.|-.++++ | +.+++-..|++|-..+. ||-|+.-. +|.+
T Consensus 6 IIaEYNPFHnGH~y~i~~~k~~~~ad-~ii~vMSGnFvQR--GEPAi~dKw~RA~~AL~~G-aDLViELP~~~a~qsA~~ 81 (388)
T PF05636_consen 6 IIAEYNPFHNGHLYQIEQAKKITGAD-VIIAVMSGNFVQR--GEPAIIDKWTRAEMALKNG-ADLVIELPVVYALQSAEY 81 (388)
T ss_dssp -E---TT--HHHHHHHHHHH---TSS-EEEEEE--TTSBT--SSB-SS-HHHHHHHHHHHT--SEEEE---G--------
T ss_pred eEEeECCccHHHHHHHHHHhccCCCC-EEEEEECCCcccC--CCeeeCCHHHHHHHHHHcC-CCEEEECCCccccccccc
Confidence 33458999999999999999988555 5666788778874 4 46999999999977654 99988632 2221
Q ss_pred ----hHHHHHHhccCCCccc
Q psy5600 126 ----DDEFLAKHKESTSSIS 141 (413)
Q Consensus 126 ----~~dfi~~~~~~~~~~~ 141 (413)
.+..|...||+.+++-
T Consensus 82 FA~gaV~lL~~lgvd~l~FG 101 (388)
T PF05636_consen 82 FARGAVSLLNALGVDYLSFG 101 (388)
T ss_dssp --------------------
T ss_pred cccccccccccccccccccc
Confidence 2445666665554443
No 122
>PRK13670 hypothetical protein; Provisional
Probab=96.21 E-value=0.01 Score=61.76 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=60.1
Q ss_pred EEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHhccch
Q psy5600 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGERR 342 (413)
Q Consensus 263 iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv~~~~ 342 (413)
++=+---||-||.||..+|++|++.++. .++++|-+-.++.+.. .++++..+|.++.. . -.||.|+.-..
T Consensus 3 ~~GIIaEfdg~H~GH~~~i~~a~~~a~~-~~~~~Vmp~~f~qrg~-p~i~~~~~R~~~a~-------~-~GvD~vielpf 72 (388)
T PRK13670 3 VTGIIVEYNPFHNGHLYHLNQAKKLTNA-DVTIAVMSGNFVQRGE-PAIVDKWTRAKMAL-------E-NGVDLVVELPF 72 (388)
T ss_pred eeEEEeeeCCcCHHHHHHHHHHHHHHhC-CCcEEEecHHHhCCCC-CCCCCHHHHHHHHH-------H-cCCCEEEEeCC
Confidence 3334447999999999999999998744 4555555777776622 35999999999975 2 34555543321
Q ss_pred -------hhhhH----hHHhhchhhhccceeeeecCC
Q psy5600 343 -------VDMIQ----KWEEKSRDIIDTFLLLFGREG 368 (413)
Q Consensus 343 -------~d~~~----~~e~~~~Dii~~f~~~~G~Dw 368 (413)
.++.. .+.....+. ++||.|.
T Consensus 73 ~~a~~sae~F~~~aV~iL~~l~v~~-----lv~G~e~ 104 (388)
T PRK13670 73 LYSVQSADFFAEGAVSILDALGVDS-----LVFGSES 104 (388)
T ss_pred chHhCCHHHHHHhHHHHHHHcCCCE-----EEEcCCC
Confidence 12333 344444444 8999993
No 123
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=96.17 E-value=0.0037 Score=63.13 Aligned_cols=99 Identities=17% Similarity=0.138 Sum_probs=58.9
Q ss_pred ceEEEEccccccCChhHHHHHHHHHhcCCCcEE-EEEEcchhhhhh---cCCCC--CCCHHHHHHHHhhHHHHHhhhhhH
Q psy5600 261 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYL-IVGVCSDALTHR---KKGRT--VMNDEKKFRFQNKIEEFKDRSKRV 334 (413)
Q Consensus 261 ~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~L-IVGV~sD~~v~~---~Kg~P--i~~~~eR~~~v~~i~~v~e~~k~V 334 (413)
...|++-|.||=+|.||..+|++|++.+..+.+ .+.++=+..-.. ....| +++.++|++.++ .+ .|
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~-------~~-gv 86 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLA-------GY-GV 86 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHH-------hc-CC
Confidence 567889999999999999999999854322222 233333322222 11122 889999999987 32 34
Q ss_pred HHHhccch---------hhhhH-hHHhhchhhhccceeeeecCCCccc
Q psy5600 335 MENIGERR---------VDMIQ-KWEEKSRDIIDTFLLLFGREGRLKH 372 (413)
Q Consensus 335 d~vv~~~~---------~d~~~-~~e~~~~Dii~~f~~~~G~Dw~~~~ 372 (413)
|.++.... .++++ ..+.++... ++.|.||+.+.
T Consensus 87 d~~~v~~F~~~fa~ls~~~Fv~~lv~~l~~k~-----ivvG~DF~FGk 129 (304)
T COG0196 87 DALVVLDFDLEFANLSAEEFVELLVEKLNVKH-----IVVGFDFRFGK 129 (304)
T ss_pred cEEEEEeCCHhHhhCCHHHHHHHHHhccCCcE-----EEEecccccCC
Confidence 44433321 12333 333444443 78888888663
No 124
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.09 E-value=0.02 Score=57.77 Aligned_cols=68 Identities=16% Similarity=0.051 Sum_probs=58.1
Q ss_pred CCCCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHH-hccccCceee
Q psy5600 43 NNASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR-HCRYVDEVVR 119 (413)
Q Consensus 43 ~~~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~-a~r~VDeVvi 119 (413)
.+.++++++-+-..-.||+.||--+++||.+.+ |.|-+=|-+++ +..|+.++|.++|+ .+++.++|.+
T Consensus 140 ~r~~gkkIgaIVMNANPFTLGH~YLVEqAaaqc--DwlHLFvV~eD-------~S~f~y~~R~~Lv~~G~~~l~Nvt~ 208 (352)
T COG3053 140 LRHPGKKIGAIVMNANPFTLGHRYLVEQAAAQC--DWLHLFVVKED-------SSLFPYEDRLDLVKKGTADLPNVTV 208 (352)
T ss_pred hccCCCeeEEEEEeCCCccchhHHHHHHHHhhC--CEEEEEEEecc-------cccCCHHHHHHHHHHhhccCCceEE
Confidence 445678888888888999999999999999996 78887666654 57999999999999 5899999887
No 125
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=95.40 E-value=0.012 Score=61.21 Aligned_cols=86 Identities=23% Similarity=0.311 Sum_probs=36.7
Q ss_pred ccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCC-CCCHHHHHHHHhhHHHHHhhhhh-HHHHhcc----
Q psy5600 267 DGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRT-VMNDEKKFRFQNKIEEFKDRSKR-VMENIGE---- 340 (413)
Q Consensus 267 ~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~P-i~~~~eR~~~v~~i~~v~e~~k~-Vd~vv~~---- 340 (413)
---|..||.||.-+|++||+..+.|. ||+|-|-.++. +|.| +++--.|.++ +++. ||-|+.=
T Consensus 7 IaEYNPFHnGH~y~i~~~k~~~~ad~-ii~vMSGnFvQ--RGEPAi~dKw~RA~~---------AL~~GaDLViELP~~~ 74 (388)
T PF05636_consen 7 IAEYNPFHNGHLYQIEQAKKITGADV-IIAVMSGNFVQ--RGEPAIIDKWTRAEM---------ALKNGADLVIELPVVY 74 (388)
T ss_dssp E---TT--HHHHHHHHHHH---TSSE-EEEEE--TTSB--TSSB-SS-HHHHHHH---------HHHHT-SEEEE---G-
T ss_pred EEeECCccHHHHHHHHHHhccCCCCE-EEEEECCCccc--CCCeeeCCHHHHHHH---------HHHcCCCEEEECCCcc
Confidence 34689999999999999999885554 66677777875 5776 8899999988 4444 5554421
Q ss_pred --chhh-----hhHhHHhhchhhhccceeeeecCCC
Q psy5600 341 --RRVD-----MIQKWEEKSRDIIDTFLLLFGREGR 369 (413)
Q Consensus 341 --~~~d-----~~~~~e~~~~Dii~~f~~~~G~Dw~ 369 (413)
..-+ -+..+....-|. +.||.+-.
T Consensus 75 a~qsA~~FA~gaV~lL~~lgvd~-----l~FGsE~~ 105 (388)
T PF05636_consen 75 ALQSAEYFARGAVSLLNALGVDY-----LSFGSESG 105 (388)
T ss_dssp ------------------------------------
T ss_pred ccccccccccccccccccccccc-----cccccccc
Confidence 1111 134555555555 77887753
No 126
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=95.29 E-value=0.047 Score=54.58 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=52.1
Q ss_pred CCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccC-CC--CCCCCHHHHHHHHHhccccCceee
Q psy5600 45 ASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRK-KG--RTVMNDIERYEAVRHCRYVDEVVR 119 (413)
Q Consensus 45 ~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~-Kg--~Pv~~~eER~~~V~a~r~VDeVvi 119 (413)
+.+.+++++. |..-+|.||..+|++|++.. +.++|.+..+..--.. .. +.+.+.++|.++++.+. ||.++.
T Consensus 19 ~~~~~i~~v~-tmG~lH~GH~~Li~~a~~~a--~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~G-vD~v~~ 92 (281)
T PRK00380 19 REGKRIGLVP-TMGALHEGHLSLVREARAEA--DIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAAG-VDLVFA 92 (281)
T ss_pred HcCCeEEEEE-ccCceeHHHHHHHHHHHHhC--CEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHcC-CCEEEe
Confidence 3456666665 55559999999999999995 6888888777543211 11 25788999999999864 888875
No 127
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=95.24 E-value=0.02 Score=59.10 Aligned_cols=51 Identities=20% Similarity=0.377 Sum_probs=41.4
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCC-CCCCHHHHHHHH
Q psy5600 268 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGR-TVMNDEKKFRFQ 321 (413)
Q Consensus 268 G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~-Pi~~~~eR~~~v 321 (413)
--||.||.||..+|++|++++++|..++++..|=.- .|. ++++..+|.++.
T Consensus 8 ~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgdf~q---Rgepai~~k~~r~~~a 59 (358)
T COG1323 8 AEYNPFHNGHQYHINKAREEFKGDEIIAVMSGDFTQ---RGEPAIGHKWERKKMA 59 (358)
T ss_pred eecCcccccHHHHHHHHHHhccCCceEEeeecchhh---cCCCccccHHHHHhhh
Confidence 468999999999999999988677777777777543 455 589999999984
No 128
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=94.64 E-value=0.084 Score=52.97 Aligned_cols=68 Identities=18% Similarity=0.114 Sum_probs=50.3
Q ss_pred CCCeE--EEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccC-C--CCCCCCHHHHHHHHHhccccCceee
Q psy5600 46 SRKVR--VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRK-K--GRTVMNDIERYEAVRHCRYVDEVVR 119 (413)
Q Consensus 46 ~~~~~--V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~-K--g~Pv~~~eER~~~V~a~r~VDeVvi 119 (413)
.+.++ |.+=|. +|.||..++++|++.. +.++|.+..+..--.. . .+.+++.++++++++.+ .||.++.
T Consensus 20 ~g~~ig~VpTmG~---LH~GH~~LI~~a~~~a--~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~ 92 (282)
T TIGR00018 20 EGKTVGFVPTMGN---LHDGHMSLIDRAVAEN--DVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFA 92 (282)
T ss_pred cCCeEEEEECCCc---ccHHHHHHHHHHHHhC--CeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEEC
Confidence 34455 446677 9999999999999995 6889998777543111 1 13588999999999986 4887775
No 129
>PLN02660 pantoate--beta-alanine ligase
Probab=94.04 E-value=0.14 Score=51.46 Aligned_cols=68 Identities=16% Similarity=0.110 Sum_probs=49.8
Q ss_pred CCCeE--EEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccC-C--CCCCCCHHHHHHHHHhccccCceee
Q psy5600 46 SRKVR--VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRK-K--GRTVMNDIERYEAVRHCRYVDEVVR 119 (413)
Q Consensus 46 ~~~~~--V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~-K--g~Pv~~~eER~~~V~a~r~VDeVvi 119 (413)
.+.++ |.+=|. +|.||..++++|++.. +.++|.+..+..--.. . .+.+.+.++|+++++++. ||.|+.
T Consensus 19 ~g~~igfVpTmG~---LH~GH~~LI~~a~~~a--~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~G-VD~vf~ 91 (284)
T PLN02660 19 QGKRIALVPTMGY---LHEGHLSLVRAARARA--DVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAALG-VDAVFN 91 (284)
T ss_pred cCCeEEEEEcCch---hhHHHHHHHHHHHHhC--CEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHcC-CCEEEC
Confidence 34444 445566 9999999999999995 6888888877543111 1 235889999999999864 888774
No 130
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=93.06 E-value=0.25 Score=49.49 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=48.9
Q ss_pred CCCeE--EEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccC-C--CCCCCCHHHHHHHHHhccccCce
Q psy5600 46 SRKVR--VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRK-K--GRTVMNDIERYEAVRHCRYVDEV 117 (413)
Q Consensus 46 ~~~~~--V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~-K--g~Pv~~~eER~~~V~a~r~VDeV 117 (413)
.+.++ |.+=|. +|.||..++++|++.. +.++|.+..+..--.. . ...+.+.++++++++.+ .||.+
T Consensus 20 ~~~~ig~V~TmG~---LH~GH~~LI~~a~~~a--~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~v 90 (277)
T cd00560 20 QGKTIGFVPTMGA---LHEGHLSLVRRARAEN--DVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLL 90 (277)
T ss_pred cCCeEEEEECCCc---ccHHHHHHHHHHHHhC--CEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEE
Confidence 34444 445676 9999999999999995 7899999887543211 1 13588899999999986 47776
No 131
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=92.52 E-value=0.31 Score=48.80 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=42.6
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCC-C--CCCCHHHHHHHHh
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG-R--TVMNDEKKFRFQN 322 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg-~--Pi~~~~eR~~~v~ 322 (413)
+++|+++. |..-+|.||..+|++|++. ++.+||.+.....--.... . -+.+.++|+++++
T Consensus 21 ~~~i~~v~-tmG~lH~GH~~Li~~a~~~--a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~ 83 (281)
T PRK00380 21 GKRIGLVP-TMGALHEGHLSLVREARAE--ADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLE 83 (281)
T ss_pred CCeEEEEE-ccCceeHHHHHHHHHHHHh--CCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHH
Confidence 44555554 4455999999999999999 4788888876654422111 1 2668899999987
No 132
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=92.11 E-value=0.33 Score=48.78 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=39.6
Q ss_pred EccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhc-CC--CCCCCHHHHHHHHh
Q psy5600 266 ADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRK-KG--RTVMNDEKKFRFQN 322 (413)
Q Consensus 266 ~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~-Kg--~Pi~~~~eR~~~v~ 322 (413)
|-|. +|.||..++++|++. ++.+||.+.....--.. .. +-+.+.++++++++
T Consensus 29 TmG~---LH~GH~~LI~~a~~~--a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~ 83 (282)
T TIGR00018 29 TMGN---LHDGHMSLIDRAVAE--NDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLE 83 (282)
T ss_pred CCCc---ccHHHHHHHHHHHHh--CCeEEEEecCChHHhCCccccccCCCCHHHHHHHHH
Confidence 6677 999999999999999 47899988766554221 11 23668899999987
No 133
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=91.33 E-value=0.46 Score=47.57 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=40.0
Q ss_pred EEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhc-CCC--CCCCHHHHHHHHh
Q psy5600 265 YADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRK-KGR--TVMNDEKKFRFQN 322 (413)
Q Consensus 265 ~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~-Kg~--Pi~~~~eR~~~v~ 322 (413)
.|-|. +|.||..++++|++.+ +.+||.+.....--.. ... -+.+.++++++++
T Consensus 28 ~TmG~---LH~GH~~LI~~a~~~a--~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~ 83 (277)
T cd00560 28 PTMGA---LHEGHLSLVRRARAEN--DVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLE 83 (277)
T ss_pred ECCCc---ccHHHHHHHHHHHHhC--CEEEEEecCChhhcCCcccccccCCCHHHHHHHHH
Confidence 35566 9999999999999994 8999998777654221 111 2567899999987
No 134
>KOG3199|consensus
Probab=90.45 E-value=1.1 Score=43.45 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=56.7
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcC--CCC-EEEEEEecCcccccCCCCCCCCHHHHHHHHHh-ccccCceeec---
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVF--PNV-YLIVGVCSDALTHRKKGRTVMNDIERYEAVRH-CRYVDEVVRD--- 120 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf--~gd-~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a-~r~VDeVvi~--- 120 (413)
+...+..|+|.|.+++|+++++-|+..- .+. .|+=|+.+= .--.||++.+.+...|+.|+++ ++--+-+-++
T Consensus 8 ~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSP-V~DaYkKKgLipa~hrv~~~ElAt~~Skwl~vD~we 86 (234)
T KOG3199|consen 8 PVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSP-VGDAYKKKGLIPAYHRVRMVELATETSKWLMVDGWE 86 (234)
T ss_pred eEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecc-cchhhhccccchhhhHHHHHHhhhccccceecchhh
Confidence 3456778999999999999999998432 123 455577652 2223777899999999999994 5533333332
Q ss_pred ---CCCCChHHHHHHhc
Q psy5600 121 ---APWETDDEFLAKHK 134 (413)
Q Consensus 121 ---ap~~l~~dfi~~~~ 134 (413)
..|.-|.+.++.|+
T Consensus 87 slQ~~wt~T~~vlrHhq 103 (234)
T KOG3199|consen 87 SLQKEWTRTVKVLRHHQ 103 (234)
T ss_pred hccHHHhhhhHHHHHHH
Confidence 22334455555554
No 135
>PLN02660 pantoate--beta-alanine ligase
Probab=90.12 E-value=0.63 Score=46.87 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=39.4
Q ss_pred EEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhc-CC--CCCCCHHHHHHHHh
Q psy5600 265 YADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRK-KG--RTVMNDEKKFRFQN 322 (413)
Q Consensus 265 ~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~-Kg--~Pi~~~~eR~~~v~ 322 (413)
-|-|. +|.||..|+++|++.+ +.+||.+.....--.. .. +-..+.++|+++++
T Consensus 27 pTmG~---LH~GH~~LI~~a~~~a--~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~ 82 (284)
T PLN02660 27 PTMGY---LHEGHLSLVRAARARA--DVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLA 82 (284)
T ss_pred EcCch---hhHHHHHHHHHHHHhC--CEEEEEEeCChHHcCCccccccCCCCHHHHHHHHH
Confidence 34455 9999999999999994 6888888876655221 11 23668899999987
No 136
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=89.66 E-value=0.93 Score=47.39 Aligned_cols=59 Identities=19% Similarity=0.079 Sum_probs=43.6
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhc
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHC 111 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~ 111 (413)
-++|+.-=||||+|.||..++++|.+..+.|.|+|-..--. .| .-.++.+-|+++++.+
T Consensus 183 w~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~----~k-~~~~~~~~R~~~~~~~ 241 (383)
T TIGR00339 183 WDTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL----TK-PGDIPAEVRMRAYEVL 241 (383)
T ss_pred CCeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC----CC-CCCCCHHHHHHHHHHH
Confidence 35677789999999999999999987632365554433322 22 3789999999999964
No 137
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=89.24 E-value=0.1 Score=55.39 Aligned_cols=30 Identities=3% Similarity=-0.198 Sum_probs=27.3
Q ss_pred ccceEEEEccccccCChhHHHHHHHHHhcC
Q psy5600 259 SRKVRVYADGIYDMFHQGHSRQLMQAKNVF 288 (413)
Q Consensus 259 ~~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~ 288 (413)
..++++|++||||++|.||+.+|.++...+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 412 LNEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CCcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 378999999999999999999999988774
No 138
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=89.12 E-value=0.83 Score=43.22 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=36.6
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 269 IYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 269 ~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
--..|..||.-|+++|.+.| |.|.|=|-+.. +..+|+++|++||+
T Consensus 7 NaNPFT~GH~yLiE~Aa~~~--d~l~vFVV~eD-------~S~Fpf~~R~~LVk 51 (182)
T PF08218_consen 7 NANPFTLGHRYLIEQAAKEC--DWLHVFVVSED-------RSLFPFADRYELVK 51 (182)
T ss_pred cCCCCccHHHHHHHHHHHhC--CEEEEEEEccc-------cCcCCHHHHHHHHH
Confidence 34679999999999999995 78877665544 34689999999986
No 139
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=88.79 E-value=0.59 Score=46.90 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=35.0
Q ss_pred CCCCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCc
Q psy5600 43 NNASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDA 88 (413)
Q Consensus 43 ~~~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe 88 (413)
.++.++++++++ |---+|-||+.|+++|++. +|.+||.|.-+.
T Consensus 17 ~r~~gk~Vg~VP-TMG~LH~GHlsLVr~A~~~--~d~VVVSIFVNP 59 (285)
T COG0414 17 LRKEGKRVGLVP-TMGNLHEGHLSLVRRAKKE--NDVVVVSIFVNP 59 (285)
T ss_pred HHHcCCEEEEEc-CCcccchHHHHHHHHHhhc--CCeEEEEEEeCh
Confidence 445667777766 5567999999999999998 589999998874
No 140
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=87.91 E-value=0.44 Score=47.88 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=25.4
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchh
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDA 301 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~ 301 (413)
+++|+|+. |---||.||+.|+++|++. +|.+||.|.-..
T Consensus 21 ~~~igfVP-TMGaLHeGHlsLi~~A~~~--~d~vVVSIFVNP 59 (280)
T PF02569_consen 21 GKTIGFVP-TMGALHEGHLSLIRRARAE--NDVVVVSIFVNP 59 (280)
T ss_dssp TSSEEEEE-E-SS--HHHHHHHHHHHHH--SSEEEEEE---G
T ss_pred CCeEEEEC-CCchhhHHHHHHHHHHHhC--CCEEEEEECcCc
Confidence 34454442 4445799999999999999 699999996443
No 141
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=87.80 E-value=0.93 Score=49.12 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=42.7
Q ss_pred eEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCc-------ccccCCCCCCCCHHHHHHHHHhccccCceee
Q psy5600 49 VRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDA-------LTHRKKGRTVMNDIERYEAVRHCRYVDEVVR 119 (413)
Q Consensus 49 ~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe-------~v~~~Kg~Pv~~~eER~~~V~a~r~VDeVvi 119 (413)
+++++ -|-=-+|-||+.|+++|++.+ |.+||.|.-+. ...+ .--+++.=+++++.. .||.|+.
T Consensus 21 ~ig~V-PTMG~LH~GHlsLi~~A~~~~--d~vVvSIFVNP~QF~~~eD~~~----YPr~~~~D~~~l~~~-gvd~vf~ 90 (512)
T PRK13477 21 TIGFV-PTMGALHQGHLSLIRRARQEN--DVVLVSIFVNPLQFGPNEDLER----YPRTLEADRELCESA-GVDAIFA 90 (512)
T ss_pred cEEEE-CCCcchhHHHHHHHHHHHHhC--CEEEEEEccCcccCCCchhhhh----CCCCHHHHHHHHHhc-CCCEEEC
Confidence 44444 455679999999999999994 89999996653 2222 233456666666654 4776664
No 142
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=86.67 E-value=0.93 Score=45.55 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=31.2
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhh
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDAL 302 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~ 302 (413)
+++|+|+. |---||.||+.|+++|++. .|.+||.|.-...
T Consensus 21 gk~Vg~VP-TMG~LH~GHlsLVr~A~~~--~d~VVVSIFVNP~ 60 (285)
T COG0414 21 GKRVGLVP-TMGNLHEGHLSLVRRAKKE--NDVVVVSIFVNPL 60 (285)
T ss_pred CCEEEEEc-CCcccchHHHHHHHHHhhc--CCeEEEEEEeChh
Confidence 44555553 5567999999999999998 7999999865543
No 143
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=85.86 E-value=0.75 Score=46.25 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=37.3
Q ss_pred CCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCC---CCCCCHHHHHHHHHhccccCceee
Q psy5600 46 SRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG---RTVMNDIERYEAVRHCRYVDEVVR 119 (413)
Q Consensus 46 ~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg---~Pv~~~eER~~~V~a~r~VDeVvi 119 (413)
.+.++++++ |-=-+|-||+.|+++|++. +|.+||.|.-+..=-..+. +.--+++.=+++++++ .||-|+.
T Consensus 20 ~~~~igfVP-TMGaLHeGHlsLi~~A~~~--~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~-gvD~vF~ 92 (280)
T PF02569_consen 20 AGKTIGFVP-TMGALHEGHLSLIRRARAE--NDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA-GVDAVFA 92 (280)
T ss_dssp TTSSEEEEE-E-SS--HHHHHHHHHHHHH--SSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT-T-SEEE-
T ss_pred cCCeEEEEC-CCchhhHHHHHHHHHHHhC--CCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc-CCCEEEc
Confidence 455565554 3334699999999999998 4899999986643111110 1233455555666554 4786663
No 144
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=83.32 E-value=1.1 Score=48.59 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=27.4
Q ss_pred eEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEE
Q psy5600 262 VRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGV 297 (413)
Q Consensus 262 ~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV 297 (413)
+|+|+ -|---||.||+.|+++|++. +|.+||.|
T Consensus 21 ~ig~V-PTMG~LH~GHlsLi~~A~~~--~d~vVvSI 53 (512)
T PRK13477 21 TIGFV-PTMGALHQGHLSLIRRARQE--NDVVLVSI 53 (512)
T ss_pred cEEEE-CCCcchhHHHHHHHHHHHHh--CCEEEEEE
Confidence 45554 35567999999999999999 58999999
No 145
>KOG3042|consensus
Probab=80.07 E-value=2.5 Score=41.38 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=36.0
Q ss_pred CCCCCCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCc
Q psy5600 42 NNNASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDA 88 (413)
Q Consensus 42 ~~~~~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe 88 (413)
+.++.|.++.+++ +--.+|-||+.+++|+.+. +++.+|.|.-+.
T Consensus 18 ~~R~~g~tIgfVP-TMG~LHeGH~SLvrqs~~~--~~~tVVSIfVNP 61 (283)
T KOG3042|consen 18 ELRETGETIGFVP-TMGCLHEGHASLVRQSVKE--NTYTVVSIFVNP 61 (283)
T ss_pred HHHhcCCeEEEec-ccccccccHHHHHHHHHhh--CceEEEEEEech
Confidence 4456678887776 4556999999999999999 589999998874
No 146
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=76.71 E-value=3.9 Score=41.76 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=45.0
Q ss_pred ccceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHh
Q psy5600 259 SRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322 (413)
Q Consensus 259 ~~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~ 322 (413)
.+++|.-+-+--..|-.||--|.++|.+.| |.|-+=|-++. +..+|+++|+++++
T Consensus 143 ~gkkIgaIVMNANPFTLGH~YLVEqAaaqc--DwlHLFvV~eD-------~S~f~y~~R~~Lv~ 197 (352)
T COG3053 143 PGKKIGAIVMNANPFTLGHRYLVEQAAAQC--DWLHLFVVKED-------SSLFPYEDRLDLVK 197 (352)
T ss_pred CCCeeEEEEEeCCCccchhHHHHHHHHhhC--CEEEEEEEecc-------cccCCHHHHHHHHH
Confidence 367888888889999999999999999996 78776555544 24689999999985
No 147
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=73.24 E-value=0.96 Score=48.02 Aligned_cols=30 Identities=3% Similarity=-0.198 Sum_probs=26.4
Q ss_pred CCCeEEEEcCccCCCChHHHHHHHHHhhcC
Q psy5600 46 SRKVRVYADGIYDMFHQGHSRQLMQAKNVF 75 (413)
Q Consensus 46 ~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf 75 (413)
.+.+.++++||||.+|.||+.+|.+|..-+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 412 LNEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CCcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 367789999999999999999999988653
No 148
>KOG3199|consensus
Probab=67.63 E-value=12 Score=36.57 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=47.2
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcC--C-CcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhh
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVF--P-NVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNK 323 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~--~-gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~ 323 (413)
...+....|.|..+-.+|+++++-|+..- . +-+|+=|+-|=- ...||.+-.+|...|.+|+++
T Consensus 7 ~~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV-~DaYkKKgLipa~hrv~~~El 72 (234)
T KOG3199|consen 7 TPVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPV-GDAYKKKGLIPAYHRVRMVEL 72 (234)
T ss_pred ceEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEeccc-chhhhccccchhhhHHHHHHh
Confidence 34456678999999999999999999532 1 345666776633 335777789999999999884
No 149
>KOG3042|consensus
Probab=67.23 E-value=7.9 Score=38.03 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=31.9
Q ss_pred cceEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhh
Q psy5600 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDAL 302 (413)
Q Consensus 260 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~ 302 (413)
+++|.|+. +--.+|.||..|.+++.+. .++.+|.|.-...
T Consensus 23 g~tIgfVP-TMG~LHeGH~SLvrqs~~~--~~~tVVSIfVNP~ 62 (283)
T KOG3042|consen 23 GETIGFVP-TMGCLHEGHASLVRQSVKE--NTYTVVSIFVNPS 62 (283)
T ss_pred CCeEEEec-ccccccccHHHHHHHHHhh--CceEEEEEEechh
Confidence 55666654 5567999999999999999 7999999865543
No 150
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=65.25 E-value=20 Score=37.57 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=39.7
Q ss_pred eEEEEccccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhh
Q psy5600 262 VRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNK 323 (413)
Q Consensus 262 ~iV~~~G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~ 323 (413)
+.|...=|||.+|.||..+.+.|.+..+.|.|++-..--. .|. -.++.+.|+++++.
T Consensus 184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~----~k~-~~~~~~~R~~~~~~ 240 (383)
T TIGR00339 184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL----TKP-GDIPAEVRMRAYEV 240 (383)
T ss_pred CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC----CCC-CCCCHHHHHHHHHH
Confidence 3455578999999999999999988632465554433221 122 46788999998873
No 151
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.63 E-value=68 Score=34.03 Aligned_cols=109 Identities=15% Similarity=0.112 Sum_probs=60.9
Q ss_pred ceEEEEc--cccccCChhHHHHHHHHHhcCCCcEEEEEEcchhhhhhcCCCCCCCHHHHHHHHhhHHHHHhhhhhHHHHh
Q psy5600 261 KVRVYAD--GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENI 338 (413)
Q Consensus 261 ~~iV~~~--G~FDl~H~GHi~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg~Pi~~~~eR~~~v~~i~~v~e~~k~Vd~vv 338 (413)
+..+|+. =|-+-+|.||+=.|.+.+.+.+..+=++.+--|-.. +-|-|.-..++|..+-+ +.|.++.+.+-+.+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~ivLigd~ta--~IgDpsGk~e~r~~l~~--e~v~~n~~~i~~ql 107 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATA--MIGDPSGKSEERKLLTR--ETVLENAETIKKQL 107 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCeEEEEecccce--ecCCCCCCHHHHhhccH--HHHHHHHHHHHHHh
Confidence 4455554 245679999998888887764334545555555432 34556666777765532 33333333332222
Q ss_pred ccchhhhhHhHHhhchhhhccceeeeecCCCccchhhhhHHHhhhhcCC
Q psy5600 339 GERRVDMIQKWEEKSRDIIDTFLLLFGREGRLKHMWNEGKGKFLQAFSP 387 (413)
Q Consensus 339 ~~~~~d~~~~~e~~~~Dii~~f~~~~G~Dw~~~~~~~~~k~~~~~~~~~ 387 (413)
..++-....++++.||..+.....+=+.+..-|+.
T Consensus 108 --------------~~~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv 142 (401)
T COG0162 108 --------------GKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSV 142 (401)
T ss_pred --------------cccCCcceEEEechHHhCcCCHHHHHHHHHhHccH
Confidence 11110123478999999886655555555454543
No 152
>PLN02486 aminoacyl-tRNA ligase
Probab=29.08 E-value=2.5e+02 Score=29.64 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=28.7
Q ss_pred cceEEEEcccc--ccCChhHHHHHHHHHhcC--CCcEEEEEEcchhhhhh
Q psy5600 260 RKVRVYADGIY--DMFHQGHSRQLMQAKNVF--PNVYLIVGVCSDALTHR 305 (413)
Q Consensus 260 ~~~iV~~~G~F--Dl~H~GHi~~L~~Ak~l~--~gd~LIVGV~sD~~v~~ 305 (413)
+.-.+|++--. +-+|.||+=-+...+.+- .|-.+++.++.|+...+
T Consensus 72 ~~~~vYtG~~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~ 121 (383)
T PLN02486 72 EKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLW 121 (383)
T ss_pred CCeEEEeCCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhh
Confidence 34456665432 369999987777665432 14677787887765543
No 153
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=29.00 E-value=1.4e+02 Score=31.18 Aligned_cols=66 Identities=20% Similarity=0.133 Sum_probs=45.5
Q ss_pred CeEEEEcCccCCCChHHHHHHHHHhhcCCCC-EEEEEEecCcccccCCCCCCCCHHHHHHHHHhc--ccc--Cceee
Q psy5600 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNV-YLIVGVCSDALTHRKKGRTVMNDIERYEAVRHC--RYV--DEVVR 119 (413)
Q Consensus 48 ~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd-~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~--r~V--DeVvi 119 (413)
-++|+.-=|-+|+|.||..++++|.+..+++ -||.-+..- ++.-=++.+-|++..+++ .|. |.+++
T Consensus 156 w~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~plvG~------~k~~d~~~~~r~~~~~~l~~~y~~~~~~~l 226 (353)
T cd00517 156 WRRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPLVGW------TKPGDVPDEVRMRAYEALLEEYYLPERTVL 226 (353)
T ss_pred CCeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEeccCC------CCCCCCCHHHHHHHHHHHHHhCCCCCcEEE
Confidence 3467777899999999999999998865213 333333322 234578999999999985 455 55544
No 154
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=27.30 E-value=1.7e+02 Score=31.04 Aligned_cols=59 Identities=15% Similarity=-0.002 Sum_probs=44.0
Q ss_pred CCCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHHHHHHHhc
Q psy5600 46 SRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHC 111 (413)
Q Consensus 46 ~~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER~~~V~a~ 111 (413)
.+-++|..-=|++++|.||-.+.+.|....|| -|+--|-.. +++-=++.+-|++..+++
T Consensus 181 kgwk~vvafQTRNp~HraHEyl~K~Al~~vdg-llv~plVG~------tk~gD~~~e~rm~~ye~l 239 (397)
T COG2046 181 KGWKTVVAFQTRNPPHRAHEYLQKRALEKVDG-LLVHPLVGA------TKPGDIPDEVRMEYYEAL 239 (397)
T ss_pred cCCeEEEEEecCCCchHHHHHHHHHHHHhcCc-EEEEeeecc------ccCCCchHHHHHHHHHHH
Confidence 45678899999999999999999999988643 343344333 334567788888888874
No 155
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=27.24 E-value=89 Score=32.93 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=27.9
Q ss_pred CC-CeEEEEcC--ccCCCChHHHH------HHHHHhhcCCCCEEEEEEecC
Q psy5600 46 SR-KVRVYADG--IYDMFHQGHSR------QLMQAKNVFPNVYLIVGVCSD 87 (413)
Q Consensus 46 ~~-~~~V~~~G--~FDlfH~GHi~------~L~qAk~lf~gd~LIVGV~sD 87 (413)
++ ..++|+.| .+|+.|+||++ +|.|..++. |..+.-..+.|
T Consensus 6 ~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~-G~~V~~V~nit 55 (384)
T PRK12418 6 PGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDA-GHDVHYVQNVT 55 (384)
T ss_pred CCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHc-CCceEEEEecC
Confidence 45 67788887 68999999985 567776665 43444444444
No 156
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=26.73 E-value=6.2e+02 Score=24.90 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCCcEEEEEEcchhhhhhcCC
Q psy5600 279 RQLMQAKNVFPNVYLIVGVCSDALTHRKKG 308 (413)
Q Consensus 279 ~~L~~Ak~l~~gd~LIVGV~sD~~v~~~Kg 308 (413)
+-+++.+++ +-.+++|++.=.++...-+
T Consensus 189 ~~i~~l~~~--~~pil~G~SrkSfig~~~~ 216 (257)
T cd00739 189 RRLDELKQL--GLPVLVGASRKSFIGALLG 216 (257)
T ss_pred HHHHHHHhC--CCcEEEEecccHHHHHhcC
Confidence 334444555 5789999988888765544
No 157
>PLN02946 cysteine-tRNA ligase
Probab=24.32 E-value=94 Score=34.39 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcC--ccCCCChHHHH------HHHHHhhcCCCCEEEEEEecC
Q psy5600 44 NASRKVRVYADG--IYDMFHQGHSR------QLMQAKNVFPNVYLIVGVCSD 87 (413)
Q Consensus 44 ~~~~~~~V~~~G--~FDlfH~GHi~------~L~qAk~lf~gd~LIVGV~sD 87 (413)
..++...+|++| ++|..|+||++ +|+|..+.. |-.|.-..+.|
T Consensus 76 ~~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~-Gy~V~~V~niT 126 (557)
T PLN02946 76 KVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHL-GYEVRYVRNFT 126 (557)
T ss_pred CCCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhc-CCcEEEEECCC
Confidence 345778899988 69999999975 567766665 33444444443
No 158
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=23.02 E-value=2.1e+02 Score=30.29 Aligned_cols=57 Identities=16% Similarity=-0.005 Sum_probs=42.0
Q ss_pred CCeEEEEcCccCCCChHHHHHHHHHhhcCCCCEEEE-EEecCcccccCCCCCCCCHHHHHHHHHhc
Q psy5600 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIV-GVCSDALTHRKKGRTVMNDIERYEAVRHC 111 (413)
Q Consensus 47 ~~~~V~~~G~FDlfH~GHi~~L~qAk~lf~gd~LIV-GV~sDe~v~~~Kg~Pv~~~eER~~~V~a~ 111 (413)
+-++|+.-=|-+|+|.||..+.+.|.+.+ |-|++ -+.. .++.-=++.+-|++..+++
T Consensus 185 gw~~VvafqTrnP~HraHe~l~~~a~e~~--d~lll~plvG------~~k~~di~~~~r~~~~~~~ 242 (391)
T PRK04149 185 GWKTVVAFQTRNPPHRAHEYLQKCALEIV--DGLLLNPLVG------ETKSGDIPAEVRMEAYEAL 242 (391)
T ss_pred CCCeEEEeecCCCCchHHHHHHHHHHHhc--CeEEEecCcC------CCCCCCCCHHHHHHHHHHH
Confidence 34567778889999999999999999886 43443 2222 1234578999999999985
No 159
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=22.89 E-value=1e+02 Score=29.60 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=33.8
Q ss_pred CCCeEEEEcC--ccCCCChHHH------HHHHHHhhcCCCCEEEEEEecCcccccCCCCCCCCHHHH
Q psy5600 46 SRKVRVYADG--IYDMFHQGHS------RQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIER 104 (413)
Q Consensus 46 ~~~~~V~~~G--~FDlfH~GHi------~~L~qAk~lf~gd~LIVGV~sDe~v~~~Kg~Pv~~~eER 104 (413)
++...+|+.| .++..|+||+ ++|.|..++. |-.+.-....|+ -|-|+....++
T Consensus 18 ~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~-G~~V~~~~g~dd-----~g~ki~~~A~~ 78 (213)
T cd00672 18 PGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDL-GYKVRYVQNITD-----IDDKIIKRARE 78 (213)
T ss_pred CCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhc-CCeeEEEeecCC-----CCCHHHHHHHH
Confidence 3555666666 5799999997 4677776665 455666666664 34455554444
No 160
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=21.73 E-value=1.2e+02 Score=26.22 Aligned_cols=49 Identities=27% Similarity=0.528 Sum_probs=27.2
Q ss_pred CEEEEEEecCcccccCC---CCCCCCHHHHHHHHHhccccCceeecCCCCCh
Q psy5600 78 VYLIVGVCSDALTHRKK---GRTVMNDIERYEAVRHCRYVDEVVRDAPWETD 126 (413)
Q Consensus 78 d~LIVGV~sDe~v~~~K---g~Pv~~~eER~~~V~a~r~VDeVvi~ap~~l~ 126 (413)
.+-+||+.+|+.-...+ +-|++..-+.+.-+-.-..||+|++.-|+...
T Consensus 103 g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~ 154 (175)
T PF13727_consen 103 GYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSEE 154 (175)
T ss_dssp SEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS-H
T ss_pred CceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCH
Confidence 47899999987643322 34777766666666655789999998887643
No 161
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=21.32 E-value=1.2e+02 Score=34.45 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=28.3
Q ss_pred CCCCeEEEEcC--ccCCCChHHHH------HHHHHhhcCCCCEEEEEEec
Q psy5600 45 ASRKVRVYADG--IYDMFHQGHSR------QLMQAKNVFPNVYLIVGVCS 86 (413)
Q Consensus 45 ~~~~~~V~~~G--~FDlfH~GHi~------~L~qAk~lf~gd~LIVGV~s 86 (413)
.++..++|+.| ++|..|+||++ +|+|..++. |-.+.-..+.
T Consensus 245 ~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~-Gy~V~fV~Ni 293 (699)
T PRK14535 245 DPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLREC-GYPLTYVRNI 293 (699)
T ss_pred CCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHc-CCceEEEeCC
Confidence 45678899988 69999999975 577776664 3334333333
Done!