RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5600
(413 letters)
>gnl|CDD|173925 cd02174, CCT, CTP:phosphocholine cytidylyltransferase.
CTP:phosphocholine cytidylyltransferase (CCT) catalyzes
the condensation of CTP and phosphocholine to form
CDP-choline as the rate-limiting and regulatory step in
the CDP-choline pathway. CCT is unique in that its
enzymatic activity is regulated by the extent of its
association with membrane structures. A current model
posts that the elastic stress of the bilayer curvature
is sensed by CCT and this governs the degree of membrane
association, thus providing a mechanism for both
positive and negative regulation of activity.
Length = 150
Score = 235 bits (603), Expect = 3e-77
Identities = 83/198 (41%), Positives = 102/198 (51%), Gaps = 48/198 (24%)
Query: 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYE 106
R VRVY DG +D+FH GH+ L QAK + PN YLIVGV SD H+ KG VM + ERYE
Sbjct: 1 RPVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYE 60
Query: 107 AVRHCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQR 166
AVRHC++VDEVV AP+ T EFL K+K
Sbjct: 61 AVRHCKWVDEVVEGAPYVTTPEFLDKYK-------------------------------- 88
Query: 167 ITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLKARGMFVATQRTEGVSTSDIV 226
D++AH D Y+ G D Y +K G F +RTEGVST+D++
Sbjct: 89 ----------------CDYVAHGDDIYLDADGEDCYQEVKDAGRFKEVKRTEGVSTTDLI 132
Query: 227 ARIVRDYDIYVRRNLARG 244
RI+ DY Y RRNL RG
Sbjct: 133 GRILLDYRDYHRRNLQRG 150
Score = 106 bits (267), Expect = 1e-27
Identities = 32/56 (57%), Positives = 38/56 (67%)
Query: 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDE 315
R VRVY DG +D+FH GH+ L QAK + PN YLIVGV SD H+ KG VM +E
Sbjct: 1 RPVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEE 56
>gnl|CDD|215229 PLN02413, PLN02413, choline-phosphate cytidylyltransferase.
Length = 294
Score = 220 bits (561), Expect = 3e-69
Identities = 104/221 (47%), Positives = 132/221 (59%), Gaps = 52/221 (23%)
Query: 46 SRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERY 105
R VRVYADGIYD+FH GH+R L QAK +FPN YL+VG C+D LTH+ KG+TVM + ERY
Sbjct: 25 DRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERY 84
Query: 106 EAVRHCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQ 165
E++RHC++VDEV+ DAPW EFL KH
Sbjct: 85 ESLRHCKWVDEVIPDAPWVITQEFLDKH-------------------------------- 112
Query: 166 RITYDDAKQGKGKAWERIDFIAHDDIPY--MSEFGTDVYAHLKARGMFVATQRTEGVSTS 223
RID++AHD +PY S G DVY +K G F T+RT+G+STS
Sbjct: 113 ----------------RIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTS 156
Query: 224 DIVARIVRDYDIYVRRNLARGYTAKDLNVSFLNVTSRKVRV 264
DI+ RIV+DY+ YV RNLARGY+ KDL VS+ V +++RV
Sbjct: 157 DIIMRIVKDYNQYVMRNLARGYSRKDLGVSY--VKEKRLRV 195
Score = 98.9 bits (246), Expect = 2e-23
Identities = 37/61 (60%), Positives = 50/61 (81%)
Query: 258 TSRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKK 317
+ R VRVYADGIYD+FH GH+R L QAK +FPN YL+VG C+D LTH+ KG+TVM ++++
Sbjct: 24 SDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDER 83
Query: 318 F 318
+
Sbjct: 84 Y 84
>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase;
Provisional.
Length = 353
Score = 129 bits (327), Expect = 3e-34
Identities = 89/286 (31%), Positives = 121/286 (42%), Gaps = 74/286 (25%)
Query: 49 VRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAV 108
+RV+ DG +DM H GH+ L QA+ + L VG SD R KG VM+ ERYEA+
Sbjct: 12 IRVWVDGCFDMLHFGHANALRQARAL--GDELFVGCHSDEEIMRNKGPPVMHQEERYEAL 69
Query: 109 RHCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRIT 168
R C++VDEVV P+ T E L ER +C
Sbjct: 70 RACKWVDEVVEGYPYTTRLEDL--------------------------ERLEC------- 96
Query: 169 YDDAKQGKGKAWERIDFIAH-DDIPYMSEFGTDVYAHLKARGMFVATQRTEGVSTSDIVA 227
DF+ H DDI G + Y + G F +RTEG+ST+D+V
Sbjct: 97 ---------------DFVVHGDDISVDLN-GRNSYQEIIDAGKFKVVKRTEGISTTDLVG 140
Query: 228 RI---VRDY-DIYVRRNLARGYTAKDLNVSFLNVTSRKVR--------------VYADGI 269
R+ + + V S TSRK+ VY DG
Sbjct: 141 RMLLCTKSHLLKSVDEVQLESSLFPYTPTSHCLTTSRKIVQFSNNRSPKPGDRIVYVDGS 200
Query: 270 YDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRT--VMN 313
+D+FH GH R L +A+ + YLIVGV D + + +KG +MN
Sbjct: 201 FDLFHIGHIRVLQKAREL--GDYLIVGVHEDQVVNEQKGSNYPIMN 244
Score = 78.7 bits (194), Expect = 4e-16
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 52/203 (25%)
Query: 51 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRT--VMNDIERYEAV 108
VY DG +D+FH GH R L +A+ + YLIVGV D + + +KG +MN ER V
Sbjct: 195 VYVDGSFDLFHIGHIRVLQKAREL--GDYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGV 252
Query: 109 RHCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRIT 168
CRYVDEVV AP++ E + I++ FSD N E
Sbjct: 253 LSCRYVDEVVIGAPFDVTKEVIDSLH-----INVVVGGKFSDL---------VNEEG--- 295
Query: 169 YDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLKARGMFVATQRTEGVSTSDIVAR 228
G+D Y KA G+F ++T IV R
Sbjct: 296 -----------------------------GSDPYEVPKAMGIFKEVDSGCDLTTDSIVDR 326
Query: 229 IVRDYDIYVRRNLARGYTAKDLN 251
+V++ +++R + AK++
Sbjct: 327 VVKNRLAFLKRQAKK--RAKEIK 347
Score = 49.4 bits (118), Expect = 2e-06
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 262 VRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFR 319
+RV+ DG +DM H GH+ L QA+ + L VG SD R KG VM+ E+++
Sbjct: 12 IRVWVDGCFDMLHFGHANALRQARAL--GDELFVGCHSDEEIMRNKGPPVMHQEERYE 67
>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis,
outer membrane / Lipid metabolism].
Length = 140
Score = 123 bits (312), Expect = 3e-34
Identities = 49/195 (25%), Positives = 75/195 (38%), Gaps = 55/195 (28%)
Query: 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEA 107
RV+ADG +D+ H GH L QAK + + ++V + + RKK + +M + +R E
Sbjct: 1 MKRVWADGTFDILHPGHIEFLRQAKKLG-DELIVVVARDETVIKRKKRKPIMPEEQRAEV 59
Query: 108 VRHCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRI 167
+ RYVDEV+ APW+ E + ++K
Sbjct: 60 LESLRYVDEVILGAPWDIKFEDIEEYK--------------------------------- 86
Query: 168 TYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLKARGMFVATQRTEGVSTSDIVA 227
D + D + Y L RG+FV +RTEGVST +
Sbjct: 87 ---------------PDIVVLGDDQK-FDEDDLKY-ELVKRGLFVEVKRTEGVSTCE--- 126
Query: 228 RIVRDYDIYVRRNLA 242
++ DI R
Sbjct: 127 -LISTSDIIKRILEL 140
Score = 62.3 bits (152), Expect = 8e-12
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 261 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDE 315
RV+ADG +D+ H GH L QAK + + ++V + + RKK + +M +E
Sbjct: 1 MKRVWADGTFDILHPGHIEFLRQAKKLG-DELIVVVARDETVIKRKKRKPIMPEE 54
>gnl|CDD|215227 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase.
Length = 418
Score = 119 bits (298), Expect = 9e-30
Identities = 102/347 (29%), Positives = 142/347 (40%), Gaps = 95/347 (27%)
Query: 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYE 106
+ VRVY DG +DM H GH+ L QA+ + L+VGV SD KG V ER
Sbjct: 52 KPVRVYMDGCFDMMHYGHANALRQARALGDE--LVVGVVSDEEIIANKGPPVTPMHERMI 109
Query: 107 AVRHCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQR 166
V ++VDEV+ DAP+ +EF+ K E N
Sbjct: 110 MVSGVKWVDEVIPDAPYAITEEFMNK---------------------LFNEYN------- 141
Query: 167 ITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLKARGMFVATQRTEGVSTSDIV 226
ID+I H D P + GTD YA K G + +RTEGVS++DIV
Sbjct: 142 ----------------IDYIIHGDDPCLLPDGTDAYALAKKAGRYKQIKRTEGVSSTDIV 185
Query: 227 ARI---VRDY---DIYVRRNLARGYTA-----------KDLNVSFLNVTSRKVR------ 263
R+ VR+ D + +L R ++ VS TSR++
Sbjct: 186 GRMLLCVRERSISDSHNHSSLQRQFSHGHSQFEDGGSGSGTRVSHFLPTSRRIVQFSNGK 245
Query: 264 --------VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDAL--THRKKGRTVMN 313
VY DG +D+FH GH L A+ + +L+VG+ +D HR R +MN
Sbjct: 246 GPGPDARIVYIDGAFDLFHAGHVEILRLARAL--GDFLLVGIHTDQTVSAHRGAHRPIMN 303
Query: 314 DEKKFRFQNKIEEFKDRSKRVMENIGERRVDMIQKWEEKSRDIIDTF 360
+RS V+ V + W E S+D+I TF
Sbjct: 304 -------------LHERSLSVLACRYVDEVIIGAPW-EVSKDMITTF 336
Score = 73.2 bits (179), Expect = 5e-14
Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 49/200 (24%)
Query: 51 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDAL--THRKKGRTVMNDIERYEAV 108
VY DG +D+FH GH L A+ + +L+VG+ +D HR R +MN ER +V
Sbjct: 254 VYIDGAFDLFHAGHVEILRLARAL--GDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSV 311
Query: 109 RHCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRIT 168
CRYVDEV+ APWE ++K +T +IS+
Sbjct: 312 LACRYVDEVIIGAPWE-----VSKDMITTFNISLVV------------------------ 342
Query: 169 YDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLKARGMFVATQRTEGVSTSDIVAR 228
G E DF+ +D P YA K+ G+F + ++TS I+ R
Sbjct: 343 -------HGTVAENNDFLKGEDDP---------YAVPKSMGIFQVLESPLDITTSTIIRR 386
Query: 229 IVRDYDIYVRRNLARGYTAK 248
IV +++ Y +RN + + K
Sbjct: 387 IVANHEAYQKRNEKKAESEK 406
>gnl|CDD|173924 cd02173, ECT, CTP:phosphoethanolamine cytidylyltransferase (ECT).
CTP:phosphoethanolamine cytidylyltransferase (ECT)
catalyzes the conversion of phosphoethanolamine to
CDP-ethanolamine as part of the CDP-ethanolamine
biosynthesis pathway. ECT expression in hepatocytes is
localized predominantly to areas of the cytoplasm that
are rich in rough endoplasmic reticulum. Several ECTs,
including yeast and human ECT, have large repetitive
sequences located within their N- and C-termini.
Length = 152
Score = 90.8 bits (226), Expect = 8e-22
Identities = 57/194 (29%), Positives = 75/194 (38%), Gaps = 54/194 (27%)
Query: 51 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDIERYEAV 108
VY DG +D+FH GH L +A+ + YLIVGV D + KG +MN ER +V
Sbjct: 5 VYVDGAFDLFHIGHIEFLEKARELGD--YLIVGVHDDQTVNEYKGSNYPIMNLHERVLSV 62
Query: 109 RHCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRIT 168
CRYVDEVV AP+ E + K
Sbjct: 63 LACRYVDEVVIGAPYVITKELIEHFK---------------------------------- 88
Query: 169 YDDAKQGKGKAWERIDFIAH--DDIPYMSEFGTDVYAHLKARGMFVATQRTEGVSTSDIV 226
ID + H + S G D YA K G+F ++T DIV
Sbjct: 89 --------------IDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIV 134
Query: 227 ARIVRDYDIYVRRN 240
RI+++ Y RN
Sbjct: 135 NRIIKNRLAYEARN 148
Score = 44.9 bits (107), Expect = 9e-06
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 264 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMN 313
VY DG +D+FH GH L +A+ + YLIVGV D + KG +MN
Sbjct: 5 VYVDGAFDLFHIGHIEFLEKARELGD--YLIVGVHDDQTVNEYKGSNYPIMN 54
>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain. Protein
families that contain at least one copy of this domain
include citrate lyase ligase, pantoate-beta-alanine
ligase, glycerol-3-phosphate cytidyltransferase,
ADP-heptose synthase, phosphocholine
cytidylyltransferase, lipopolysaccharide core
biosynthesis protein KdtB, the bifunctional protein
NadR, and a number whose function is unknown. Many of
these proteins are known to use CTP or ATP and release
pyrophosphate.
Length = 66
Score = 76.6 bits (189), Expect = 9e-18
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR 109
V G +D FH GH L +AK +F LIVGV SD + KG V + ER E ++
Sbjct: 1 IVIFVGTFDPFHLGHLDLLERAKELFD--ELIVGVGSDQFVNPLKGEPVFSLEERLEMLK 58
Query: 110 HCRYVDEV 117
+YVDE
Sbjct: 59 ALKYVDEN 66
Score = 58.8 bits (143), Expect = 2e-11
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDE 315
V G +D FH GH L +AK +F LIVGV SD + KG V + E
Sbjct: 1 IVIFVGTFDPFHLGHLDLLERAKELFD--ELIVGVGSDQFVNPLKGEPVFSLE 51
>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase. The
cytidylyltransferase family includes cholinephosphate
cytidylyltransferase (CCT), glycerol-3-phosphate
cytidylyltransferase, RafE and phosphoethanolamine
cytidylyltransferase (ECT). All enzymes catalyze the
transfer of a cytidylyl group from CTP to various
substrates.
Length = 136
Score = 74.6 bits (184), Expect = 3e-16
Identities = 51/182 (28%), Positives = 67/182 (36%), Gaps = 53/182 (29%)
Query: 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR 109
RVYA G +D+ H GH R L +AK + YLIVGV D + K R ++ + +R E V
Sbjct: 3 RVYAAGTFDIIHPGHIRFLEEAKKLGD--YLIVGVARDETVAKIKRRPILPEEQRAEVVE 60
Query: 110 HCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITY 169
+YVDEV+ PW
Sbjct: 61 ALKYVDEVILGHPWSYFKPLEELKP----------------------------------- 85
Query: 170 DDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLKARGMFVATQR--TEGVSTSDIVA 227
D I D +VY LK RG + R TEG+S+SDI+
Sbjct: 86 --------------DVIVLGDDQKNGVDEEEVYEELKKRGKVIEVPRKKTEGISSSDIIK 131
Query: 228 RI 229
RI
Sbjct: 132 RI 133
Score = 47.7 bits (114), Expect = 9e-07
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDE 315
RVYA G +D+ H GH R L +AK + YLIVGV D + K R ++ +E
Sbjct: 3 RVYAAGTFDIIHPGHIRFLEEAKKLGD--YLIVGVARDETVAKIKRRPILPEE 53
>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase. This family
includes: Cholinephosphate cytidylyltransferase.
Glycerol-3-phosphate cytidylyltransferase.
Length = 148
Score = 65.9 bits (161), Expect = 5e-13
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 52 YADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHC 111
G +D H GH R L QAK +F IVGV SD H K + + + ER E +
Sbjct: 1 LFGGTFDPIHLGHLRLLEQAKELFDLDK-IVGVPSDESPH-KDTKNLFSAEERLEMLELA 58
Query: 112 RYVDEVVRDAPWETDDEFLAK 132
VD + +E D +
Sbjct: 59 LEVDPNLEVDDFEDLDVYFII 79
Score = 44.0 bits (104), Expect = 2e-05
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 265 YADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKK 307
G +D H GH R L QAK +F IVGV SD H+
Sbjct: 1 LFGGTFDPIHLGHLRLLEQAKELFDLDK-IVGVPSDESPHKDT 42
>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate
cytidylyltransferase. Glycerol-3-phosphate
cytidylyltransferase,(CDP-glycerol pyrophosphorylase).
Glycerol-3-phosphate cytidyltransferase acts in pathways
of teichoic acid biosynthesis. Teichoic acids are
substituted polymers, linked by phosphodiester bonds, of
glycerol, ribitol, etc. An example is poly(glycerol
phosphate), the major teichoic acid of the Bacillus
subtilis cell wall. Most, but not all, species encoding
proteins in this family are Gram-positive bacteria. A
closely related protein assigned a different function
experimentally is a human ethanolamine-phosphate
cytidylyltransferase.
Length = 129
Score = 55.2 bits (133), Expect = 2e-09
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYE 106
+ V Y G +D+ H GH L +AK + LIV V +D K + V+ +R E
Sbjct: 2 KVVITY--GTFDLLHIGHLNLLERAKAL--GDKLIVAVSTDEFNAGKGKKAVIPYEQRAE 57
Query: 107 AVRHCRYVDEVVRDAPWETDDEFLAKH 133
+ RYVD V+ + WE E + K+
Sbjct: 58 ILESIRYVDLVIPETNWEQKIEDIKKY 84
Score = 45.6 bits (108), Expect = 4e-06
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 30/125 (24%)
Query: 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFR 319
+ V Y G +D+ H GH L +AK + LIV V +D K + V+ E++
Sbjct: 2 KVVITY--GTFDLLHIGHLNLLERAKAL--GDKLIVAVSTDEFNAGKGKKAVIPYEQR-- 55
Query: 320 FQNKIEEFKDRSKRVMENIGERRVDMI---QKWEEKSRDIIDTFLLLFGREGRLKHMWNE 376
++E+I R VD++ WE+K DI + +F M ++
Sbjct: 56 ------------AEILESI--RYVDLVIPETNWEQKIEDIKKYNVDVFV-------MGDD 94
Query: 377 GKGKF 381
+GKF
Sbjct: 95 WEGKF 99
>gnl|CDD|173923 cd02172, RfaE_N, N-terminal domain of RfaE. RfaE is a protein
involved in the biosynthesis of
ADP-L-glycero-D-manno-heptose, a precursor for LPS inner
core biosynthesis. RfaE is a bifunctional protein in
Escherichia coli, and separate proteins in other
organisms. Domain I is suggested to act in
D-glycero-D-manno-heptose 1-phosphate biosynthesis,
while domain II (this family) adds ADP to yield
ADP-D-glycero-D-manno-heptose .
Length = 144
Score = 51.3 bits (123), Expect = 5e-08
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 51 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRH 110
V G++D+ H GH R L A+++ L+V + SD ++ GR + + R E +
Sbjct: 7 VLCHGVFDLLHPGHVRHLQAARSL--GDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAA 64
Query: 111 CRYVDEVV 118
+VD VV
Sbjct: 65 LGFVDYVV 72
Score = 38.6 bits (90), Expect = 0.001
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 264 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKK 317
V G++D+ H GH R L A+++ L+V + SD ++ GR + ++ +
Sbjct: 7 VLCHGVFDLLHPGHVRHLQAARSL--GDILVVSLTSDRYVNKGPGRPIFPEDLR 58
>gnl|CDD|130581 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate
cytidylyltransferase. This model describes
glycerol-3-phosphate cytidyltransferase, also called
CDP-glycerol pyrophosphorylase. A closely related
protein assigned a different function experimentally is
a human ethanolamine-phosphate cytidylyltransferase (EC
2.7.7.14). Glycerol-3-phosphate cytidyltransferase acts
in pathways of teichoic acid biosynthesis. Teichoic
acids are substituted polymers, linked by phosphodiester
bonds, of glycerol, ribitol, etc. An example is
poly(glycerol phosphate), the major teichoic acid of the
Bacillus subtilis cell wall. Most but not all species
encoding proteins in this family are Gram-positive
bacteria [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 125
Score = 47.9 bits (114), Expect = 5e-07
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 55 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYV 114
G +D+ H GH L +AK + YLIV + +D +K+ + + R + RYV
Sbjct: 5 GTFDLLHWGHINLLERAKQL--GDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYV 62
Query: 115 DEVVRDAPWETDDEFLAKHK 134
D V+ + WE + +
Sbjct: 63 DLVIPEKSWEQKKQDIIDFN 82
Score = 47.2 bits (112), Expect = 1e-06
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 268 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEF 327
G +D+ H GH L +AK + YLIV + +D +K+ + + E +
Sbjct: 5 GTFDLLHWGHINLLERAKQL--GDYLIVALSTDEFNLQKQKKAYHSYEHR---------- 52
Query: 328 KDRSKRVMENIGERRVDMI---QKWEEKSRDI----IDTFLLLFGREGRLKHMWNEGKGK 380
K ++E I R VD++ + WE+K +DI ID F++ G + W EGK
Sbjct: 53 ----KLILETI--RYVDLVIPEKSWEQKKQDIIDFNIDVFVM--GDD------W-EGKFD 97
Query: 381 FLQAFSPPASPTRSRGRDSSSPEINYE 407
FL+ P R S+ +I E
Sbjct: 98 FLKDECPLKVVYLPRTEGVSTTKIKKE 124
>gnl|CDD|131254 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II. RfaE
is a protein involved in the biosynthesis of
ADP-L-glycero-D-manno-heptose, a precursor for LPS inner
core biosynthesis. RfaE is a bifunctional protein in E.
coli, and separate proteins in some other genome. Domain
I (TIGR02198) is suggested to act in
D-glycero-D-manno-heptose 1-phosphate biosynthesis,
while domain II (this family) adds ADP to yield
ADP-D-glycero-D-manno-heptose [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 144
Score = 42.7 bits (101), Expect = 5e-05
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDIER 104
+K+ V+ +G +D+ H GH L QA+ + L+VGV SDA R KG R + + +R
Sbjct: 11 KKI-VFTNGCFDILHAGHVSYLQQARAL--GDRLVVGVNSDASVKRLKGETRPINPEEDR 67
Query: 105 YEAVRHCRYVDEVV 118
E + VD VV
Sbjct: 68 AEVLAALSSVDYVV 81
Score = 39.6 bits (93), Expect = 6e-04
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRT 310
+K+ V+ +G +D+ H GH L QA+ + L+VGV SDA R KG T
Sbjct: 11 KKI-VFTNGCFDILHAGHVSYLQQARAL--GDRLVVGVNSDASVKRLKGET 58
>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate kinase/heptose
1-phosphate adenyltransferase; Provisional.
Length = 473
Score = 37.1 bits (87), Expect = 0.013
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 51 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDIERYEAV 108
V +G +D+ H GH L A+ + LIV V SDA R KG R V N +E+ AV
Sbjct: 343 VMTNGCFDILHAGHVSYLANARKLGDR--LIVAVNSDASVKRLKGEGRPV-NPLEQRMAV 399
Score = 34.8 bits (81), Expect = 0.070
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 264 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRT 310
V +G +D+ H GH L A+ + LIV V SDA R KG
Sbjct: 343 VMTNGCFDILHAGHVSYLANARKLGDR--LIVAVNSDASVKRLKGEG 387
>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar
kinase/adenylyltransferase [Cell envelope biogenesis,
outer membrane].
Length = 467
Score = 36.9 bits (86), Expect = 0.015
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 43 NNASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRT 97
A+ K V+ +G +D+ H GH L QA+ + LIVGV SDA R KG +
Sbjct: 327 RLAAGKKVVFTNGCFDILHAGHVTYLAQARAL--GDRLIVGVNSDASVKRLKGES 379
Score = 36.9 bits (86), Expect = 0.018
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 264 VYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRT 310
V+ +G +D+ H GH L QA+ + LIVGV SDA R KG +
Sbjct: 335 VFTNGCFDILHAGHVTYLAQARAL--GDRLIVGVNSDASVKRLKGES 379
>gnl|CDD|184228 PRK13671, PRK13671, hypothetical protein; Provisional.
Length = 298
Score = 35.4 bits (82), Expect = 0.038
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 57 YDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHR 92
Y+ FH GH Q+ KN FPN +IV + S T R
Sbjct: 9 YNPFHNGHIYQINYIKNKFPNEKIIV-ILSGKYTQR 43
Score = 35.4 bits (82), Expect = 0.038
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 270 YDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHR 305
Y+ FH GH Q+ KN FPN +IV + S T R
Sbjct: 9 YNPFHNGHIYQINYIKNKFPNEKIIV-ILSGKYTQR 43
>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase;
Provisional.
Length = 153
Score = 33.3 bits (77), Expect = 0.087
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 55 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYV 114
G +D H GH L +A + V +G+ SD K V R + ++ +++
Sbjct: 8 GTFDPLHDGHRALLRKAFELGKRVT--IGLTSDEFAKSYKKHKVRPYEVRLKNLK--KFL 63
Query: 115 DEVVRDAPWE 124
V D +E
Sbjct: 64 KAVEYDREYE 73
Score = 27.5 bits (62), Expect = 8.9
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 268 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTV 311
G +D H GH L +A + V +G+ SD K V
Sbjct: 8 GTFDPLHDGHRALLRKAFELGKRVT--IGLTSDEFAKSYKKHKV 49
>gnl|CDD|147308 pfam05059, Orbi_VP4, Orbivirus VP4 core protein. Orbiviruses are
double stranded RNA retroviruses of which the bluetongue
virus is a member. The core of bluetongue virus (BTV) is
a multienzyme complex composed of two major proteins
(VP7 and VP3) and three minor proteins (VP1, VP4 and
VP6) in addition to the viral genome. VP4 has been shown
to perform all RNA capping activities and has both
methyltransferase type 1 and type 2 activities
associated with it.
Length = 642
Score = 33.2 bits (76), Expect = 0.28
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 27/120 (22%)
Query: 195 SEFGTDVYA----------HLKARG-MFVATQRTEGVSTSDIVARIVRDYDIYVRRNLAR 243
++ TD+YA L+ G +FV+T++ + D + D+ + + + R
Sbjct: 42 GKYATDIYAYGPLQKWTIRQLRGHGFIFVSTKKR--IRLLDGIIPP----DVVIPQQVLR 95
Query: 244 GYTAKDLN--VSFLNVTSRK-----VRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVG 296
+ K+ + V RK +R YA FH + LM A P + + G
Sbjct: 96 DHDMKEFETLIGRRRVRLRKKFGDILRNYAFKFAIEFHGSEAETLMMAD---PRRHKVYG 152
>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General
function prediction only].
Length = 158
Score = 30.3 bits (69), Expect = 0.85
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 55 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYV 114
G +D H GH + L A + V +G+ SD L +KK + R +R ++
Sbjct: 12 GTFDRLHDGHKKLLEVAFEIGDRVT--IGLTSDELAKKKKKEKIEPYEVRLRNLR--NFL 67
Query: 115 DE 116
+
Sbjct: 68 ES 69
>gnl|CDD|173915 cd02164, PPAT_CoAS, phosphopantetheine adenylyltransferase domain
of eukaryotic and archaeal bifunctional enzymes. The
PPAT domain of the bifunctional enzyme with PPAT and
DPCK functions. The final two steps of the CoA
biosynthesis pathway are catalyzed by phosphopantetheine
adenylyltransferase (PPAT) and dephospho-CoA (dPCoA)
kinase (DPCK). The PPAT reaction involves the reversible
adenylation of 4'-phosphopantetheine to form 3'-dPCoA
and PPi, and DPCK catalyses phosphorylation of the
3'-hydroxy group of the ribose moiety of dPCoA. In
eukaryotes the two enzymes are part of a large
multienzyme complex . Studies in Corynebacterium
ammoniagenes suggested that separate enzymes were
present, and this was confirmed through identification
of the bacterial PPAT/CoAD.
Length = 143
Score = 30.3 bits (69), Expect = 0.96
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 55 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYV 114
G +D H GH L A + LI+GV SD L + K + IE YE R +
Sbjct: 6 GTFDRLHDGHKILLSVAFLLAGEK-LIIGVTSDELL-KNKSLKEL--IEPYE-ERI-ANL 59
Query: 115 DEVVRD 120
E + D
Sbjct: 60 HEFLVD 65
Score = 28.4 bits (64), Expect = 3.6
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 268 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEF 327
G +D H GH L A + LI+GV SD L K + IE +
Sbjct: 6 GTFDRLHDGHKILLSVAFLLAGEK-LIIGVTSDELLKNKS------------LKELIEPY 52
Query: 328 KDRSKRVMENIGERR 342
++R + E + + +
Sbjct: 53 EERIANLHEFLVDLK 67
>gnl|CDD|184424 PRK13964, coaD, phosphopantetheine adenylyltransferase;
Provisional.
Length = 140
Score = 30.1 bits (68), Expect = 1.1
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 261 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRF 320
K+ +Y G +D FH+GH L +A +F VY++V + D K D +
Sbjct: 2 KIAIYP-GSFDPFHKGHLNILKKALKLFDKVYVVVSINPD------KSNASDLDSRFKNV 54
Query: 321 QNKIEEFKD 329
+NK+++FK+
Sbjct: 55 KNKLKDFKN 63
Score = 28.9 bits (65), Expect = 2.3
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSD 87
K+ +Y G +D FH+GH L +A +F VY++V + D
Sbjct: 2 KIAIYP-GSFDPFHKGHLNILKKALKLFDKVYVVVSINPD 40
>gnl|CDD|202594 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase family.
This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic
acid aldolase and 4-hydroxy-2-oxovalerate aldolase.
Length = 221
Score = 30.0 bits (68), Expect = 1.9
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 179 AWERID--FIAHDDIPYMSEFGTDVYAH----LKARGMFVATQRTEGVSTSDIVARIVRD 232
A E +D F+ +D ++ GT L AR +A R G++ D VA + D
Sbjct: 140 AVEGLDGVFLGPED--LSADLGTLRSPGGPEVLFARTRILAAARAAGIAAFDTVASDIDD 197
Query: 233 YDIYVRRNLARGYTAKDL 250
LA G L
Sbjct: 198 ----AEGFLAEGALFVAL 211
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 30.3 bits (68), Expect = 1.9
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 88 ALTHRKKGRTVMNDI-ERYEAVRHCRYVDEVVRDAPWETDDEFLAKHKESTSSIS 141
AL R+ G+T+ N I E EAV CRY + VRD EF + + IS
Sbjct: 118 ALCVREAGKTIHNAIAEVREAVDFCRYYAKQVRD----VLGEFSVESRGVFVCIS 168
>gnl|CDD|225884 COG3347, COG3347, Uncharacterized conserved protein [Function
unknown].
Length = 404
Score = 30.0 bits (68), Expect = 2.1
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 184 DFIAHDDIPYMSEFGT---DVYAHLKARGMFVATQRTEGVSTSDIVARIVRDYDIYVRRN 240
+F D+ +++ G+ D K + V +A +Y Y RN
Sbjct: 267 EFANSLDLRRIAQRGSATPDHVIRTKIGPLVADDPGENDVGIKSAIAAYAEEYQAYFERN 326
Query: 241 LARGYTAKDLN 251
A G T D
Sbjct: 327 KAEGKTMLDPA 337
>gnl|CDD|132807 cd06897, PX_SNARE, The phosphoinositide binding Phox Homology
domain of SNARE proteins from fungi. The PX domain is a
phosphoinositide (PI) binding module present in many
proteins with diverse functions such as cell signaling,
vesicular trafficking, protein sorting, and lipid
modification, among others. This subfamily is composed
of fungal proteins similar to Saccharomyces cerevisiae
Vam7p. They contain an N-terminal PX domain and a
C-terminal SNARE domain. The SNARE (Soluble NSF
attachment protein receptor) family of proteins are
integral membrane proteins that serve as key factors for
vesicular trafficking. Vam7p is anchored at the vacuolar
membrane through the specific interaction of its PX
domain with phosphatidylinositol-3-phosphate (PI3P)
present in bilayers. It plays an essential role in
vacuole fusion. The PX domain is involved in targeting
of proteins to PI-enriched membranes, and may also be
involved in protein-protein interaction.
Length = 108
Score = 28.4 bits (64), Expect = 2.7
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 128 EFLAKHKESTSSISITKPAPF---------SDEPEAVEER 158
EF+A HK+ S + I P P S P+ VEER
Sbjct: 37 EFVALHKQLESEVGIEPPYPLPPKSWFLSTSSNPKLVEER 76
>gnl|CDD|147641 pfam05582, Peptidase_U57, YabG peptidase U57. YabG is a protease
involved in the proteolysis and maturation of SpoIVA and
YrbA proteins, conserved with the cortex and/or coat
assembly by Bacillus subtilis.
Length = 287
Score = 29.5 bits (67), Expect = 2.8
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 321 QNKIEEFKDRSKRVMENIGERRVDMIQKWEEKSRDIIDTFLLLFGREGRLKHM 373
+ F+++ ++ I + R M +K E ++ + L FGR GR+ H+
Sbjct: 59 TRYKKRFEEKINESLKLIRQDRKLMREKQEYRATRGYNENELYFGRPGRVLHL 111
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme
metabolism / Lipid metabolism].
Length = 627
Score = 28.7 bits (65), Expect = 6.1
Identities = 7/47 (14%), Positives = 19/47 (40%)
Query: 316 KKFRFQNKIEEFKDRSKRVMENIGERRVDMIQKWEEKSRDIIDTFLL 362
+ R + ++ K+V+ +G ++ EE + ++ L
Sbjct: 192 ARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTL 238
>gnl|CDD|130335 TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydroxylase, tetrameric
form. This model describes the larger, tetrameric form
of phenylalanine-4-hydroxylase, as found in metazoans.
The enzyme irreversibly converts phenylalanine to
tryosine and is known to be the rate-limiting step in
phenylalanine catabolism in some systems. It is closely
related to metazoan tyrosine 3-monooxygenase and
tryptophan 5-monoxygenase, and more distantly to
monomeric phenylalanine-4-hydroxylases of some
Gram-negative bacteria. The member of this family from
Drosophila has been described as having both
phenylalanine-4-hydroxylase and tryptophan
5-monoxygenase activity (PMID:1371286). However, a
Drosophila member of the tryptophan 5-monoxygenase clade
has subsequently been discovered.
Length = 436
Score = 28.6 bits (64), Expect = 6.3
Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 17/146 (11%)
Query: 2 EASSTGDNIDENGGASSLIDSMGDHIPSLNNGVDEALFHDNNN-----ASRKVRVYADGI 56
E S D ++EN +SLI S+ + +L + LF ++ SR + +
Sbjct: 2 EESYIADQVNENIAKTSLIFSLKEEAGALAETL--KLFQAHDVNLTHIESRPSKTHPGE- 58
Query: 57 YDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTV--------MNDIERYEAV 108
Y+ F + + + V ++ V + L+ K +NDI+R+ A
Sbjct: 59 YEFFVEFDEASDRKLEGVIEHLRQKAEVTVNILSRDNKQNKDSVPWFPRKINDIDRF-AN 117
Query: 109 RHCRYVDEVVRDAPWETDDEFLAKHK 134
+ Y E+ D P D + A+ K
Sbjct: 118 QILSYGAELDADHPGFKDPVYRARRK 143
>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 292
Score = 28.4 bits (64), Expect = 6.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 137 TSSISITKPAPFSDEPE 153
TSSISIT+ A +D PE
Sbjct: 119 TSSISITRLASATDRPE 135
>gnl|CDD|181961 PRK09569, PRK09569, type I citrate synthase; Reviewed.
Length = 437
Score = 28.2 bits (63), Expect = 8.6
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 317 KFRFQNKIEEFKDRSKRVMENIGERRVDMIQK 348
K + KIEE + R+ R+++ G +D +
Sbjct: 4 KETLKQKIEEHRPRTTRLVKEFGSVVIDEVTI 35
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,447,017
Number of extensions: 2106299
Number of successful extensions: 1952
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1913
Number of HSP's successfully gapped: 73
Length of query: 413
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 314
Effective length of database: 6,546,556
Effective search space: 2055618584
Effective search space used: 2055618584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)