RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5600
(413 letters)
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP,
CTP, phosphoethanolamine, cytidylyltra SGC, structural
genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Length = 341
Score = 248 bits (634), Expect = 2e-79
Identities = 78/304 (25%), Positives = 114/304 (37%), Gaps = 80/304 (26%)
Query: 42 NNNASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMND 101
+ R VRV+ DG YDM H GHS QL QA+ + YLIVGV +D + KG V
Sbjct: 1 SMGGRRAVRVWCDGCYDMVHYGHSNQLRQARAM--GDYLIVGVHTDEEIAKHKGPPVFTQ 58
Query: 102 IERYEAVRHCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQC 161
ERY+ V+ ++VDEVV AP+ T E L K+
Sbjct: 59 EERYKMVQAIKWVDEVVPAAPYVTTLETLDKYN--------------------------- 91
Query: 162 NYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLKARGMFVATQRTEGVS 221
DF H + ++ G D Y +K G + +RT+GVS
Sbjct: 92 ---------------------CDFCVHGNDITLTVDGRDTYEEVKQAGRYRECKRTQGVS 130
Query: 222 TSDIVARIVRDYDIYVRRNLAR---------------GYTAKDLNVSFLNVTSR------ 260
T+D+V R++ + G FL + +
Sbjct: 131 TTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKCPGGRNPWTGVSQFLQTSQKIIQFAS 190
Query: 261 -------KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTV 311
+ +Y G +D+FH GH L + + Y+I G+ D + KG +
Sbjct: 191 GKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPI 250
Query: 312 MNDE 315
MN
Sbjct: 251 MNLH 254
Score = 178 bits (453), Expect = 1e-52
Identities = 46/195 (23%), Positives = 69/195 (35%), Gaps = 51/195 (26%)
Query: 45 ASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKG--RTVMNDI 102
+ +Y G +D+FH GH L + + Y+I G+ D + KG +MN
Sbjct: 195 QPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNLH 254
Query: 103 ERYEAVRHCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCN 162
ER +V CRYV EVV AP+ E L+ K
Sbjct: 255 ERTLSVLACRYVSEVVIGAPYAVTAELLSHFK---------------------------- 286
Query: 163 YEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEF-GTDVYAHLKARGMFVATQRTEGVS 221
+D + H + + G+D Y K RG+F ++
Sbjct: 287 --------------------VDLVCHGKTEIIPDRDGSDPYQEPKRRGIFRQIDSGSNLT 326
Query: 222 TSDIVARIVRDYDIY 236
T IV RI+ + Y
Sbjct: 327 TDLIVQRIITNRLEY 341
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold,
phospholipid synthesis, phosphatidylcholine,
phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A
{Rattus norvegicus}
Length = 236
Score = 213 bits (544), Expect = 1e-67
Identities = 119/212 (56%), Positives = 136/212 (64%), Gaps = 48/212 (22%)
Query: 45 ASRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIER 104
R VRVYADGI+D+FH GH+R LMQAKN+FPN YLIVGVCSD LTH KG TVMN+ ER
Sbjct: 73 CERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENER 132
Query: 105 YEAVRHCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYE 164
Y+AV+HCRYVDEVVR+APW EFLA+H+
Sbjct: 133 YDAVQHCRYVDEVVRNAPWTLTPEFLAEHR------------------------------ 162
Query: 165 QRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLKARGMFVATQRTEGVSTSD 224
IDF+AHDDIPY S DVY H+K GMF TQRTEG+STSD
Sbjct: 163 ------------------IDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSD 204
Query: 225 IVARIVRDYDIYVRRNLARGYTAKDLNVSFLN 256
I+ RIVRDYD+Y RRNL RGYTAK+LNVSF+N
Sbjct: 205 IITRIVRDYDVYARRNLQRGYTAKELNVSFIN 236
Score = 90.8 bits (225), Expect = 3e-21
Identities = 42/58 (72%), Positives = 47/58 (81%)
Query: 258 TSRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDE 315
R VRVYADGI+D+FH GH+R LMQAKN+FPN YLIVGVCSD LTH KG TVMN+
Sbjct: 73 CERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNEN 130
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP;
2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Length = 129
Score = 146 bits (372), Expect = 3e-43
Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 58/181 (32%)
Query: 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR 109
+V G +D+ H GH + L +AK + YL+V + +D +K+ + + R +
Sbjct: 3 KVITYGTFDLLHWGHIKLLERAKQL--GDYLVVAISTDEFNLQKQKKAYHSYEHRKLILE 60
Query: 110 HCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITY 169
RYVDEV+ + WE + + H
Sbjct: 61 TIRYVDEVIPEKNWEQKKQDIIDHN----------------------------------- 85
Query: 170 DDAKQGKGKAWERIDFIAH-DDIPYMSEFGTDVYAHLKARGMFVATQRTEGVSTSDIVAR 228
ID DD + LK + V RTEG+ST+ I
Sbjct: 86 -------------IDVFVMGDDW-------EGKFDFLKDQCEVVYLPRTEGISTTKIKEE 125
Query: 229 I 229
I
Sbjct: 126 I 126
Score = 79.8 bits (198), Expect = 2e-18
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDE 315
+V G +D+ H GH + L +AK + YL+V + +D +K+ + + E
Sbjct: 3 KVITYGTFDLLHWGHIKLLERAKQL--GDYLVVAISTDEFNLQKQKKAYHSYE 53
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A
{Staphylococcus aureus}
Length = 132
Score = 142 bits (361), Expect = 1e-41
Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 58/186 (31%)
Query: 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR 109
RV G YD+ H GH L +A+ + YLIV + +D K ++ + +R +
Sbjct: 3 RVITYGTYDLLHYGHIELLRRAREM--GDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLE 60
Query: 110 HCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITY 169
RYVD V+ + W ++ + K
Sbjct: 61 SIRYVDLVIPEKGWGQKEDDVEKFD----------------------------------- 85
Query: 170 DDAKQGKGKAWERIDFIAH-DDIPYMSEFGTDVYAHLKARGMFVATQRTEGVSTSDIVAR 228
+D D + LK + + +RTEG+ST+ I
Sbjct: 86 -------------VDVFVMGHD-------WEGEFDFLKDKCEVIYLKRTEGISTTKIKQE 125
Query: 229 IVRDYD 234
+
Sbjct: 126 LYGKDA 131
Score = 78.3 bits (194), Expect = 8e-18
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDE 315
RV G YD+ H GH L +A+ + YLIV + +D K ++ + E
Sbjct: 3 RVITYGTYDLLHYGHIELLRRAREM--GDYLIVALSTDEFNQIKHKKSYYDYE 53
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI,
MCSG, protein structure initiative; HET: AMP; 1.99A
{Thermoplasma volcanium GSS1}
Length = 143
Score = 50.7 bits (122), Expect = 5e-08
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 48 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEA 107
+RV A G++D+ H GH L ++K + L+V V D+ + ++ R
Sbjct: 2 MIRVMATGVFDILHLGHIHYLKESKKL--GDELVVVVARDSTARNNGKIPIFDENSRLAL 59
Query: 108 VRHCRYVDEVV 118
+ + VD +
Sbjct: 60 ISELKVVDRAI 70
Score = 38.3 bits (90), Expect = 0.001
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 261 KVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDE 315
+RV A G++D+ H GH L ++K + L+V V D+ + ++
Sbjct: 2 MIRVMATGVFDILHLGHIHYLKESKKL--GDELVVVVARDSTARNNGKIPIFDEN 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 3e-06
Identities = 71/434 (16%), Positives = 130/434 (29%), Gaps = 130/434 (29%)
Query: 17 SSLIDSMGDHIPSLNNGVDEALFHDNNNASRKVRVYADGIYDMFHQGHSRQLMQAKNVFP 76
LI + + L +A +V+ G+ ++ + ++ + P
Sbjct: 185 GDLIKFSAETLSELIRTTLDA-----------EKVFTQGL-NI------LEWLENPSNTP 226
Query: 77 NV-YL--------IVGVCSDA---LTHRKKGRTVMNDIERYEAVRHCRYVDEVVRD---A 121
+ YL ++GV A +T + G T + +V A
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH--SQGLVTAVAIA 284
Query: 122 PWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWE 181
++ + F +I++ F E + I D + +G
Sbjct: 285 ETDSWESF---FVSVRKAITVL----FFIGVRCYEAYPNTSLPPSILEDSLENNEG---- 333
Query: 182 RIDFIAHDDIP-YMSEFGTDVYAHLKARGMFVATQRTEGVSTSDIVARIVR-------DY 233
+P M L + + + + +
Sbjct: 334 ---------VPSPM----------LSISNL----------TQEQVQDYVNKTNSHLPAGK 364
Query: 234 DIYV-----RRN--LARGYTAKDLNVSFLNVTSRKVRVYADGIYDMFHQGHSRQLM-QAK 285
+ + +N ++ G + L LN+T RK + A D Q SR + K
Sbjct: 365 QVEISLVNGAKNLVVS-GP-PQSLYG--LNLTLRKAK--APSGLD---Q--SRIPFSERK 413
Query: 286 NVFPNVYLIVGV---------CSDALTHRKKGRTVMNDEKKFRFQNKIEEFKD----RSK 332
F N +L V SD + V + K + + + D R
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--VYDTFDGSDLRVL 471
Query: 333 RVMENIGERRVDMIQK----WEEKSRDIIDTFLLLFG-----REGRLKHMWNEGKG-KFL 382
+I ER VD I + WE ++ T +L FG G L H +G G + +
Sbjct: 472 S--GSISERIVDCIIRLPVKWETTTQFKA-THILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Query: 383 QAFSPPASPTRSRG 396
A + +P G
Sbjct: 529 VAGTLDINPDDDYG 542
Score = 41.2 bits (96), Expect = 7e-04
Identities = 48/300 (16%), Positives = 80/300 (26%), Gaps = 120/300 (40%)
Query: 103 ERYEAVRHCRYVDEVVRDAPWETDDEFLAKHKESTSSISITKPAP------FSDEP-EAV 155
+ Y+ + +D W D K S + I P F E + +
Sbjct: 1634 DLYKT-------SKAAQDV-WNRADNHF-KDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 156 EERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTD--------------- 200
E NY + ++ GK K + I Y F ++
Sbjct: 1685 RE----NY-SAMIFETIVDGKLKTEKIFKEINEHSTSYT--FRSEKGLLSATQFTQPALT 1737
Query: 201 -----VYAHLKARGMFVATQRTEG---------VSTSDI-----VARIVRDYDIYVRRNL 241
+ LK++G+ A G S +D+ + +V
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF---------- 1787
Query: 242 ARGYTAKDLNVSFLNVTSRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDA 301
RG T + V D G S M A N P + +A
Sbjct: 1788 YRGMTMQVA-------------VPRD------ELGRSNYGMIAIN--PGR-VAASFSQEA 1825
Query: 302 LTHRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVME----NI--------GERR-VDMIQK 348
L Q +E R+ ++E N+ G+ R +D +
Sbjct: 1826 L------------------QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Score = 40.8 bits (95), Expect = 8e-04
Identities = 53/386 (13%), Positives = 102/386 (26%), Gaps = 133/386 (34%)
Query: 16 ASSLIDSMGDHIPSLNNGVDEALFHDNNNASRKVRVYADGIYDMF--------HQGHSRQ 67
AS L + +P E D+ + + + + G Q
Sbjct: 30 ASQLQEQFNKILPE----PTEGFAADDEPTT-PAELVGK--FLGYVSSLVEPSKVGQFDQ 82
Query: 68 LMQAK-NVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRDAPWETD 126
++ F N YL +G NDI H + E D
Sbjct: 83 VLNLCLTEFENCYL-------------EG----NDI-------HA-----LAAKLLQEND 113
Query: 127 DEFLAKHK--------ESTSSISITKPAP---FSDEPEAVEERN---------QCN---Y 163
+ + + K + F AV E N Q N Y
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALF----RAVGEGNAQLVAIFGGQGNTDDY 169
Query: 164 --EQRITYDDAKQGKGKAWERIDFIA---------HDDIPYMSEFGTDVYAHLKARGM-- 210
E R Y + I F A D + G ++ L+
Sbjct: 170 FEELRDLYQT---YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 211 ----------------------FVATQRTEGVSTSDIVARI----VRDYDIYVRRNLARG 244
+V T + G + ++ + + + +A
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 245 YTAKDLNVSFLNVTSRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTH 304
+ + SF + + V +F G ++ +PN L + D+L +
Sbjct: 287 DSWE----SFFVSVRKAITV-------LFFIG-----VRCYEAYPNTSLPPSILEDSLEN 330
Query: 305 RKKGRTVM---NDEKKFRFQNKIEEF 327
+ + M ++ + + Q+ + +
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKT 356
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 4e-06
Identities = 48/346 (13%), Positives = 104/346 (30%), Gaps = 112/346 (32%)
Query: 111 CRYVDEVVRDA--PWETDDEFLAKHKESTSSISITKPAPFSDEPE-----AVEERNQCNY 163
C+ V ++ + E D ++K S + + E VEE + NY
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT---LLSKQEEMVQKFVEEVLRINY 91
Query: 164 E---QRITYDDAKQGKGKAWERIDFIA-----HDDIPYMSEFGTDVY---AHLKAR---- 208
+ I + + + +I ++D +++ +V +LK R
Sbjct: 92 KFLMSPI----KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--NVSRLQPYLKLRQALL 145
Query: 209 -----------GMFVATQRTEGVSTSDIVARIVRDYDIYVRR-------NLARGYTAKDL 250
G+ G + + + Y + + NL + + +
Sbjct: 146 ELRPAKNVLIDGVL-------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 251 NVSFLNVTSRKVRVY---ADGIYDMFHQGHS-----RQLMQAKNVFPNVYLIV-GVCS-- 299
+ + + +D ++ + HS R+L+++K + N L++ V +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQNAK 257
Query: 300 ---------------------DALTHRKKGRTVMN--------DEKKFRFQNKI------ 324
D L+ ++ DE K +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 325 --EEFKDRSKRVMENIGERRVDMIQKWE-------EKSRDIIDTFL 361
E + R + I E D + W+ +K II++ L
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Score = 39.8 bits (92), Expect = 0.002
Identities = 54/391 (13%), Positives = 113/391 (28%), Gaps = 109/391 (27%)
Query: 36 EALFHDNNNASRKVRVYA---DGIY---DMFHQGH-SR-----QLMQA-KNVFPNVYLIV 82
+ + S R+Y D +Y +F + + SR +L QA + P +++
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 83 -GV--CSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRDAP-----WETDDEFLAKHK 134
GV G+T + A+ C V+ W
Sbjct: 156 DGVLGS---------GKTWV-------ALDVCL--SYKVQCKMDFKIFW----------- 186
Query: 135 ESTSSISITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYM 194
+++ + PE V E Q +I + R D +I
Sbjct: 187 -----LNLKN----CNSPETVLEMLQ-KLLYQIDPNWT--------SRSDH--SSNIKLR 226
Query: 195 SEFGTDVYAHLKARGMFVATQRTEGVSTSDIV--ARIVRDYDIYVRRNLARGYTAKDLNV 252
+ A L R + + + V A+ +++ + L T + V
Sbjct: 227 IH---SIQAEL--RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-ILL---TTRFKQV 277
Query: 253 S-FLNVTSRKVRVYADGIYDMFHQGHSRQLM-------------QAKNVFP-NVYLIVGV 297
+ FL+ + + D + L+ + P + +I
Sbjct: 278 TDFLSAATTT-HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 298 CSDALTHRKKGRTVMNDEKKFRFQNKIE-----EFKDRSKR--VME---NIGERRVDMIQ 347
D L + V D+ ++ + E++ R V +I + +I
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI- 395
Query: 348 KWEEKSRDIIDTFLLLFGREGRLKHMWNEGK 378
W + + + + + ++ E
Sbjct: 396 -WFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown
function, structural genomics, MCSG, PSI-2, protein
structure initiative; 1.60A {Archaeoglobus fulgidus}
Length = 148
Score = 44.2 bits (104), Expect = 1e-05
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR 109
+V G ++ H+GH + + A + +GV SD R + R+V+ R E V+
Sbjct: 2 KVALGGTFEPLHEGHKKLIDVAIK-LGGRDITIGVTSDR-MARARIRSVLPFAIRAENVK 59
Query: 110 HCRYVDEVVRDAPWETDDEF 129
+ + +
Sbjct: 60 RYVMRKYGFEPEIVKITNPY 79
Score = 37.3 bits (86), Expect = 0.002
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322
+V G ++ H+GH + + A + +GV SD R + R+V+ +
Sbjct: 2 KVALGGTFEPLHEGHKKLIDVAIK-LGGRDITIGVTSDR-MARARIRSVLPFAIRAENVK 59
Query: 323 KIEEFKDRSKRVMENI 338
+ K + + I
Sbjct: 60 RYVMRKYGFEPEIVKI 75
>1pei_A PEPC22; transferase, nucleotidyltransferase, repeat, phospholipid
biosynthesis, membrane, phosphorylation; NMR {Rattus
norvegicus} SCOP: j.14.1.1
Length = 26
Score = 32.8 bits (74), Expect = 0.009
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 338 IGERRVDMIQKWEEKSRDII 357
+ E+ +D+IQKWEEKSR+ I
Sbjct: 2 VEEKSIDLIQKWEEKSREFI 21
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide
binding fold, structural genomics, PSI; HET: NAD; 1.90A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A*
1m8k_A*
Length = 181
Score = 31.9 bits (72), Expect = 0.21
Identities = 13/104 (12%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 273 FHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEFKDRSK 332
FH+GH + + + I+ + S L+H + + + E S+
Sbjct: 15 FHRGHLQVIKSILEEVDEL--IICIGSAQLSHSIRDPFTAGERVMMLTKALSENGIPASR 72
Query: 333 RVMENIGERRVDMIQKWEEKSRDIIDTFLLLFGREGRLKHMWNE 376
+ + + ++ W + + F ++ ++ +++E
Sbjct: 73 YYIIPVQD--IECNALWVGHIKMLTPPFDRVYSGNPLVQRLFSE 114
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.31
Identities = 9/57 (15%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 305 RKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGERRVDMIQKWEEKSRDIIDTFL 361
++ R D + +E+++++K+ +E +R+ + ++K + +R F
Sbjct: 93 EQRKRLQELDAAS---KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
Score = 30.9 bits (69), Expect = 0.45
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 142 ITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDI 191
I + + EPE++ + + +R+ DA + + A D+
Sbjct: 74 IAQADRLTQEPESIRKWRE-EQRKRLQELDAASKVME--QEWREKAKKDL 120
Score = 29.7 bits (66), Expect = 1.2
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 316 KKFRFQNKIEEFKDRSKRVMENIGERRVDMIQKWEEKSRDIIDTF 360
+K+R EE + R ++ + M Q+W EK++ ++ +
Sbjct: 88 RKWR-----EEQRKR----LQELDAASKVMEQEWREKAKKDLEEW 123
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.4
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 16/40 (40%)
Query: 370 LKHMWNEGKGKFLQAFSPPASPTRSRGRDSSSPEINYEAT 409
LK + + L+ ++ D S+P + +AT
Sbjct: 22 LKKL--QAS---LKLYAD----------D-SAPALAIKAT 45
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli}
SCOP: a.174.1.1
Length = 148
Score = 28.3 bits (64), Expect = 2.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 11 DENGGASSLIDSMGDHIPSLNNGVDEAL 38
E G S L+ S G + L +++AL
Sbjct: 41 QEGGSVSPLLTSAGINAGQLRTDINQAL 68
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 28.7 bits (64), Expect = 4.5
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 250 LNVSFLNVTSRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNV 291
+N SFL++ S + D + +L K P++
Sbjct: 47 INFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSL 88
>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase
like fold, nysgxrc target T1523, PSI, protein structure
initiative; 1.86A {Bradyrhizobium japonicum} SCOP:
c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*
Length = 392
Score = 28.5 bits (64), Expect = 4.6
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 15/74 (20%)
Query: 40 HDNNNASRKVRVYADGIYDMFHQGHSRQLMQAKNV----FPNVYLIVGVCSDALTHRKKG 95
A+ +V VYA G Y +G S + + + V + +G G
Sbjct: 142 RHGVKANPRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIG-----------G 190
Query: 96 RTVMNDIERYEAVR 109
+ D R EAV
Sbjct: 191 APIEEDRMRIEAVL 204
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 28.3 bits (64), Expect = 4.9
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 198 GTDVYAHLKARGMFVATQRTEGVSTSDI-----VARIVRDYDIYVRRNLARGYTAKD 249
G ++ L G +A D VA VR V N A +TA D
Sbjct: 13 GWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAA-AHTAVD 68
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural
genomics, PSI, MCS protein structure initiative; 1.91A
{Methanocaldococcus jannaschii}
Length = 357
Score = 27.6 bits (61), Expect = 7.5
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 57 YDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDE 116
Y+ H+GH L + K + I + + +N R E D
Sbjct: 61 YNPLHKGHKYALEKGKE---HGIFISVLPGPLERSGRGIPYFLNRYIRAEMAIRAG-ADI 116
Query: 117 VV 118
VV
Sbjct: 117 VV 118
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512,
structural genomics, Pro structure initiative, PSI,
CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB:
2q4k_A
Length = 251
Score = 27.5 bits (60), Expect = 8.3
Identities = 12/79 (15%), Positives = 20/79 (25%), Gaps = 8/79 (10%)
Query: 119 RDAPWETDDEFLAKHKESTSSISITKPAPFSDE--------PEAVEERNQCNYEQRITYD 170
R P D +LAK+ S + +P S+ Q
Sbjct: 43 RTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAVYGQGYSPNSGDVQGLQAAWEA 102
Query: 171 DAKQGKGKAWERIDFIAHD 189
G+ + +A
Sbjct: 103 LQTSGRPITPGTLRQLAIT 121
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: PE8; 2.00A {Archaeoglobus
fulgidus}
Length = 293
Score = 27.2 bits (61), Expect = 9.7
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 137 TSSISITKPAPFSDEPEAV 155
TS IS+ A D P
Sbjct: 107 TSVISVDDIAERLDSPSRF 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,524,008
Number of extensions: 404363
Number of successful extensions: 1134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1111
Number of HSP's successfully gapped: 54
Length of query: 413
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 317
Effective length of database: 4,021,377
Effective search space: 1274776509
Effective search space used: 1274776509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)