RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5600
(413 letters)
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 126
Score = 49.1 bits (116), Expect = 5e-08
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 50 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVR 109
+V G +D+ H GH + L +AK + YL+V + +D +K+ + + R +
Sbjct: 3 KVITYGTFDLLHWGHIKLLERAKQLGD--YLVVAISTDEFNLQKQKKAYHSYEHRKLILE 60
Query: 110 HCRYVDEVVRDAPWETDDEFLAKHK 134
RYVDEV+ + WE + + H
Sbjct: 61 TIRYVDEVIPEKNWEQKKQDIIDHN 85
Score = 39.1 bits (90), Expect = 1e-04
Identities = 13/60 (21%), Positives = 23/60 (38%)
Query: 263 RVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQN 322
+V G +D+ H GH + L +AK + + + + L +KK K
Sbjct: 3 KVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI 62
Score = 38.0 bits (87), Expect = 4e-04
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 190 DIPYMSEFGTDVYAHLKARGMFVATQRTEGVSTSDIVARI 229
D+ M + + LK + V RTEG+ST+ I I
Sbjct: 87 DVFVMGDDWEGKFDFLKDQCEVVYLPRTEGISTTKIKEEI 126
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR,
NMN-adenylyltransferase domain {Haemophilus influenzae
[TaxId: 727]}
Length = 163
Score = 32.5 bits (73), Expect = 0.053
Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 260 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSD------ALTHRKKGRTVMN 313
+KV V G + H GH + +A + L V VCSD K R
Sbjct: 2 KKVGVIF-GKFYPVHTGHINMIYEAFSKVD--ELHVIVCSDTVRDLKLFYDSKMKRMPTV 58
Query: 314 DEKKFRFQNKIEEFKDR------SKRVMENIGERRVDMIQKWEEKSRDIIDTFLLLFGRE 367
++ Q + K++ + + + + + + ++F E
Sbjct: 59 QDRLRWMQQIFKYQKNQIFIHHLVEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSE 118
Query: 368 GRLKHMWNE 376
+ K + +
Sbjct: 119 PQDKAPYEK 127
Score = 29.8 bits (66), Expect = 0.41
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 47 RKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRK-----KGRTVMND 101
+KV V G + H GH + +A + L V VCSD + K K + +
Sbjct: 2 KKVGVIF-GKFYPVHTGHINMIYEAFSKVD--ELHVIVCSDTVRDLKLFYDSKMKRMPTV 58
Query: 102 IERYEAVRHCRYVDEVVRDAPWETDD 127
+R ++ + +D
Sbjct: 59 QDRLRWMQQIFKYQKNQIFIHHLVED 84
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 167
Score = 31.8 bits (71), Expect = 0.072
Identities = 15/109 (13%), Positives = 38/109 (34%), Gaps = 4/109 (3%)
Query: 268 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEF 327
G FH+GH + + + I+ + S L+H + + + E
Sbjct: 7 GRMQPFHRGHLQVIKSILEEVDEL--IICIGSAQLSHSIRDPFTAGERVMMLTKALSENG 64
Query: 328 KDRSKRVMENIGERRVDMIQKWEEKSRDIIDTFLLLFGREGRLKHMWNE 376
S+ I + ++ W + + F ++ ++ +++E
Sbjct: 65 IPASR--YYIIPVQDIECNALWVGHIKMLTPPFDRVYSGNPLVQRLFSE 111
>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain
{Serratia marcescens [TaxId: 615]}
Length = 356
Score = 32.0 bits (72), Expect = 0.12
Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 15/137 (10%)
Query: 250 LNVSFLNVTSRKVRVYADGIYDMFHQGHSRQLMQAKNVFPNVYLIVGV------CSDALT 303
+N SFL++ S + D + +L K P++ ++ + ++
Sbjct: 45 INFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVS 104
Query: 304 HRKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGERRVDMIQKWEEKSRDIIDTFLLL 363
H V + +F M++ G V++ WE +D F+
Sbjct: 105 HANYVNAVKTPASRAKFAQSCVRI-------MKDYGFDGVNID--WEYPQAAEVDGFIAA 155
Query: 364 FGREGRLKHMWNEGKGK 380
L + G+
Sbjct: 156 LQEIRTLLNQQTITDGR 172
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 471
Score = 32.0 bits (71), Expect = 0.13
Identities = 11/55 (20%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 305 RKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGERRVDM---IQKWEEKSRDI 356
+ + +M E+ +NK++E K+ + RV+++ G + KW+ +++
Sbjct: 415 ARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKAHKKEL 469
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 164
Score = 31.0 bits (69), Expect = 0.13
Identities = 10/127 (7%), Positives = 34/127 (26%), Gaps = 7/127 (5%)
Query: 268 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDEKKFRFQNKIEEF 327
G + FH+GH + + + + A E+ ++++
Sbjct: 7 GRFQPFHKGHLEVIKKIAEEVDEIII---GIGSAQKSHTLENPFTAGERILMITQSLKDY 63
Query: 328 KDRSKRVMENIGERRVDMIQKWEEKSRDIIDTFLLLFGREGRLKHMWNEGKGKFLQAFSP 387
+ ++ W + F +++ ++ ++ E + +
Sbjct: 64 DLTYYPIPIK----DIEFNSIWVSYVESLTPPFDIVYSGNPLVRVLFEERGYEVKRPEMF 119
Query: 388 PASPTRS 394
Sbjct: 120 NRKEYSG 126
Score = 26.3 bits (57), Expect = 4.4
Identities = 16/111 (14%), Positives = 31/111 (27%), Gaps = 4/111 (3%)
Query: 55 GIYDMFHQGHSRQLMQAKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYV 114
G + FH+GH + + + + +G ER +
Sbjct: 7 GRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQ----KSHTLENPFTAGERILMITQSLKD 62
Query: 115 DEVVRDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQ 165
++ D EF + S++ +S P + YE
Sbjct: 63 YDLTYYPIPIKDIEFNSIWVSYVESLTPPFDIVYSGNPLVRVLFEERGYEV 113
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 254
Score = 31.6 bits (72), Expect = 0.13
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 71 AKNVFPNVYLIVGVCSDALTHRKKGRTVMNDIERYEAVRHCRYVDEVVRDAPWETDDEFL 130
+++ I S R KG +I EAVRH R V+ +R ++DE +
Sbjct: 112 CRDLGEAARRIAEGAS---MLRTKGEPGTGNI--VEAVRHMRKVNAQIRKVVNMSEDELV 166
Query: 131 AKHKE 135
A+ K+
Sbjct: 167 AEAKQ 171
>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter
formigenes [TaxId: 847]}
Length = 427
Score = 27.2 bits (59), Expect = 4.0
Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 7/83 (8%)
Query: 142 ITKPAPFSDEPEAVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPY-----MSE 196
I KP D E ++ + K +E ++ A IP M E
Sbjct: 295 IDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKE 354
Query: 197 FGTDVYAHLKARGMFVATQRTEG 219
D L+ G V
Sbjct: 355 LAHD--PSLQKVGTVVEVVDEIR 375
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 333
Score = 26.6 bits (58), Expect = 6.1
Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 4/105 (3%)
Query: 111 CRYVDEVV--RDAPWETDDEFLAKHKESTSSISITKPAPFSDEPEAVEERNQCNYEQRIT 168
R +D + E L + + +E+ + E R
Sbjct: 39 LRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNL 98
Query: 169 YDDAKQGKGKAWERIDFIAHDDI--PYMSEFGTDVYAHLKARGMF 211
+ + R+ + + SE D Y H A +
Sbjct: 99 AEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVG 143
>d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 247
Score = 26.4 bits (57), Expect = 6.4
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 15/75 (20%)
Query: 45 ASRKVRVYADGIYDMFHQGHSRQLMQAKNV----FPNVYLIVGVCSDALTHRKKGRTVMN 100
A+ +V VYA G Y +G S + + + V + +G G +
Sbjct: 2 ANPRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIG-----------GAPIEE 50
Query: 101 DIERYEAVRHCRYVD 115
D R EAV D
Sbjct: 51 DRMRIEAVLEEIGKD 65
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 260
Score = 25.9 bits (56), Expect = 9.3
Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 13/117 (11%)
Query: 154 AVEERNQCNYEQRITYDDAKQGKGKAWERIDFIAHDDIPYMSEFGTDVYAHLKARGMFVA 213
VE + E R++ + D I + EF + K +
Sbjct: 146 LVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVRTHEFIPKALSIAKDGAIIHY 205
Query: 214 TQRTEGVSTSDIVARIVRDYDIYVRRNLARGYTAKDLNVSFLNVTSRKVRVYADGIY 270
V + ++ + R GY + LN K++ YA G++
Sbjct: 206 ---HNTVPEKLMPREP---FETFKRITKEYGYDVEKLNE-------LKIKRYAPGVW 249
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 25.9 bits (55), Expect = 10.0
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 305 RKKGRTVMNDEKKFRFQNKIEEFKDRSKRVMENIGERRVDM 345
K V+ +K + + K E K +++ G +++
Sbjct: 423 AKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNL 463
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,580,226
Number of extensions: 74990
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 18
Length of query: 413
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,199,356
Effective search space: 389790700
Effective search space used: 389790700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)