BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5601
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I2H|A Chain A, Crystal Structure Analysis Of Psd-Zip45(Homer1cVESL-1l)
Conserved Homer 1 Domain
Length = 168
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1 MTFTKTSQKFGQWSDIRANTV 21
MTFTKTSQKFGQW+D RANTV
Sbjct: 70 MTFTKTSQKFGQWADSRANTV 90
>pdb|2P8V|A Chain A, Crystal Structure Of Human Homer3 Evh1 Domain
Length = 117
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1 MTFTKTSQKFGQWSDIRANTV 21
MTFTKTSQKFGQW+D RANTV
Sbjct: 67 MTFTKTSQKFGQWADSRANTV 87
>pdb|1DDV|A Chain A, Crystal Structure Of The Homer Evh1 Domain With Bound
Mglur Peptide
Length = 111
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1 MTFTKTSQKFGQWSDIRANTV 21
MTFTKTSQKFGQW+D RANTV
Sbjct: 65 MTFTKTSQKFGQWADSRANTV 85
>pdb|1I7A|A Chain A, Evh1 Domain From Murine Homer 2bVESL 2
pdb|1I7A|B Chain B, Evh1 Domain From Murine Homer 2bVESL 2
pdb|1I7A|C Chain C, Evh1 Domain From Murine Homer 2bVESL 2
pdb|1I7A|D Chain D, Evh1 Domain From Murine Homer 2bVESL 2
Length = 111
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1 MTFTKTSQKFGQWSDIRANTV 21
MTFTKTSQKFGQW+D RANTV
Sbjct: 65 MTFTKTSQKFGQWADSRANTV 85
>pdb|1DDW|A Chain A, Homer Evh1 Domain Unliganded
Length = 120
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 19/20 (95%)
Query: 2 TFTKTSQKFGQWSDIRANTV 21
TFTKTSQKFGQW+D RANTV
Sbjct: 66 TFTKTSQKFGQWADSRANTV 85
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 131 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCR 190
+ +N L E K +E V LT E+K K LT +++K+E++ SEL+ R
Sbjct: 995 MEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK-------NLTKLKNKHESMISELEVR 1047
Query: 191 ----DEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQL 229
++ ++L K +E + L ++ AELQA I+ ++AQL
Sbjct: 1048 LKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090
>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2QC8|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|F Chain F, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|G Chain G, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|H Chain H, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|I Chain I, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|J Chain J, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
Length = 384
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 101 NQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDE 147
N+ +K Y+ L + V + + +R K TLDSE KC +E
Sbjct: 29 NKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEE 75
>pdb|3DV9|A Chain A, Putative Beta-Phosphoglucomutase From Bacteroides Vulgatus
Length = 247
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 191 DEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL 250
+EE+K + AK +KC + L+ + L + + Q ++D LNH
Sbjct: 87 EEEIKAIYQAKTEEFNKCPKAERXPGALEVLTKIKSEGLTPXVVTGSGQTSLLDRLNHNF 146
Query: 251 AG 252
G
Sbjct: 147 PG 148
>pdb|2PHC|B Chain B, Crystal Structure Of Conserved Uncharacterized Protein
Ph0987 From Pyrococcus Horikoshii
Length = 225
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 59 AKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKG 116
+ +W +EL S+ L + L+ S VE + K++ A E +++K K IE+ G
Sbjct: 38 SPEWLVELVPAYSSLLVIYDPLKASYEEVESYLKRISA--REVERIKGKTIEIPVAYG 93
>pdb|3F83|A Chain A, Structure Of Fusion Complex Of The Minor Pilin Cfae And
Major Pilin Cfab Of CfaI PILI FROM ETEC E. COLI
Length = 519
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 36 DAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLRLTSA-LQESTANVEEWKKQL 94
D + ++ TL+ LAG+ N + I A+L++N R+T+ + E + V W +L
Sbjct: 250 DDSKELVYTLSLLLAGKNLTPTNGQALNINTASLETNWNRITAVTMPEISVPVLCWPGRL 309
Query: 95 Q 95
Q
Sbjct: 310 Q 310
>pdb|2VPN|A Chain A, High-Resolution Structure Of The Periplasmic Ectoine-
Binding Protein From Teaabc Trap-Transporter Of
Halomonas Elongata
pdb|2VPN|B Chain B, High-Resolution Structure Of The Periplasmic Ectoine-
Binding Protein From Teaabc Trap-Transporter Of
Halomonas Elongata
pdb|2VPO|A Chain A, High Resolution Structure Of The Periplasmic Binding
Protein Teaa From Teaabc Trap Transporter Of Halomonas
Elongata In Complex With Hydroxyectoine
pdb|2VPO|B Chain B, High Resolution Structure Of The Periplasmic Binding
Protein Teaa From Teaabc Trap Transporter Of Halomonas
Elongata In Complex With Hydroxyectoine
Length = 316
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 92 KQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNE 136
+Q+QA+KE +++ K+IE+ +G E + + +L +V+S++E
Sbjct: 272 EQIQAFKERAPQVEEKFIEMTGEQG-QELLDQFKADLKAVQSESE 315
>pdb|3GYY|A Chain A, The Ectoine Binding Protein Of The Teaabc Trap Transporter
Teaa In The Apo-State
pdb|3GYY|B Chain B, The Ectoine Binding Protein Of The Teaabc Trap Transporter
Teaa In The Apo-State
pdb|3GYY|C Chain C, The Ectoine Binding Protein Of The Teaabc Trap Transporter
Teaa In The Apo-State
pdb|3GYY|D Chain D, The Ectoine Binding Protein Of The Teaabc Trap Transporter
Teaa In The Apo-State
Length = 341
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 92 KQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNE 136
+Q+QA+KE +++ K+IE+ +G E + + +L +V+S++E
Sbjct: 297 EQIQAFKERAPQVEEKFIEMTGEQG-QELLDQFKADLKAVQSESE 340
>pdb|2HB0|A Chain A, Crystal Structure Of Cfae, The Adhesive Subunit Of CfaI
Fimbria Of Enterotoxigenic Escherichia Coli
pdb|2HB0|B Chain B, Crystal Structure Of Cfae, The Adhesive Subunit Of CfaI
Fimbria Of Enterotoxigenic Escherichia Coli
Length = 369
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 36 DAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLRLTSA-LQESTANVEEWKKQL 94
D + ++ TL+ LAG+ N + I A+L++N R+T+ + E + V W +L
Sbjct: 250 DDSKELVYTLSLLLAGKNLTPTNGQALNINTASLETNWNRITAVTMPEISVPVLCWPGRL 309
Query: 95 Q 95
Q
Sbjct: 310 Q 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.121 0.317
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,061,221
Number of Sequences: 62578
Number of extensions: 201701
Number of successful extensions: 905
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 157
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)