Query psy5601
Match_columns 270
No_of_seqs 165 out of 226
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 21:43:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01206 Homer Homer type EVH1 99.3 8E-13 1.7E-17 105.0 0.4 36 1-36 65-104 (111)
2 TIGR02169 SMC_prok_A chromosom 98.6 2.2E-05 4.7E-10 83.8 27.4 19 169-187 803-821 (1164)
3 PF07888 CALCOCO1: Calcium bin 98.6 5.9E-05 1.3E-09 75.3 25.8 190 62-267 148-337 (546)
4 PF00261 Tropomyosin: Tropomyo 98.5 0.00033 7.2E-09 63.2 26.6 66 202-267 165-230 (237)
5 COG1196 Smc Chromosome segrega 98.5 0.00014 3E-09 79.1 28.0 47 218-264 854-900 (1163)
6 COG1196 Smc Chromosome segrega 98.3 0.00036 7.9E-09 75.8 27.8 7 18-24 588-594 (1163)
7 PF00261 Tropomyosin: Tropomyo 98.3 0.00023 4.9E-09 64.3 22.0 122 134-258 114-235 (237)
8 PF00038 Filament: Intermediat 98.3 0.0022 4.8E-08 59.4 29.2 78 183-260 207-288 (312)
9 PF12718 Tropomyosin_1: Tropom 98.3 0.00016 3.4E-09 60.7 19.2 132 92-229 7-138 (143)
10 PF14662 CCDC155: Coiled-coil 98.2 0.0034 7.4E-08 55.0 25.1 120 145-267 65-184 (193)
11 PRK02224 chromosome segregatio 98.2 0.0018 3.9E-08 68.1 27.3 6 87-92 491-496 (880)
12 PF12718 Tropomyosin_1: Tropom 98.1 0.00076 1.7E-08 56.6 19.1 96 94-195 2-97 (143)
13 KOG0933|consensus 98.1 0.0016 3.6E-08 68.5 24.5 150 118-267 740-890 (1174)
14 KOG0996|consensus 98.1 0.005 1.1E-07 65.9 28.2 142 126-267 426-568 (1293)
15 TIGR00606 rad50 rad50. This fa 98.1 0.0022 4.8E-08 70.6 26.5 116 145-260 797-928 (1311)
16 COG1579 Zn-ribbon protein, pos 98.0 0.0035 7.7E-08 56.9 22.9 119 133-254 52-176 (239)
17 PHA02562 46 endonuclease subun 98.0 0.0053 1.1E-07 61.1 26.3 40 221-260 359-398 (562)
18 KOG0161|consensus 98.0 0.0035 7.5E-08 70.7 26.9 134 125-258 1005-1142(1930)
19 PF09726 Macoilin: Transmembra 98.0 0.0037 8E-08 64.7 24.6 191 65-268 433-656 (697)
20 PHA02562 46 endonuclease subun 98.0 0.004 8.6E-08 62.0 24.2 27 82-108 178-204 (562)
21 KOG0250|consensus 98.0 0.0039 8.5E-08 66.3 24.6 135 120-254 310-456 (1074)
22 COG1579 Zn-ribbon protein, pos 97.9 0.0031 6.8E-08 57.2 20.7 117 133-259 38-156 (239)
23 PF10174 Cast: RIM-binding pro 97.9 0.0061 1.3E-07 63.7 25.2 201 65-265 302-524 (775)
24 KOG0996|consensus 97.9 0.0056 1.2E-07 65.5 24.7 194 60-262 387-584 (1293)
25 TIGR00606 rad50 rad50. This fa 97.9 0.01 2.2E-07 65.6 27.3 27 218-244 996-1022(1311)
26 PF07888 CALCOCO1: Calcium bin 97.8 0.0098 2.1E-07 59.7 24.3 63 126-188 164-230 (546)
27 KOG0161|consensus 97.8 0.01 2.2E-07 67.1 26.9 71 85-161 950-1020(1930)
28 KOG0250|consensus 97.8 0.009 2E-07 63.6 25.0 21 92-112 281-301 (1074)
29 PF10174 Cast: RIM-binding pro 97.8 0.016 3.4E-07 60.7 26.5 204 65-268 274-506 (775)
30 KOG0995|consensus 97.8 0.011 2.3E-07 59.4 23.5 123 68-200 239-368 (581)
31 PRK09039 hypothetical protein; 97.8 0.01 2.2E-07 56.6 22.2 100 128-230 76-175 (343)
32 PF12128 DUF3584: Protein of u 97.7 0.02 4.3E-07 62.8 26.6 62 204-265 814-875 (1201)
33 PF04849 HAP1_N: HAP1 N-termin 97.7 0.025 5.5E-07 53.0 23.2 134 134-267 161-302 (306)
34 PRK03918 chromosome segregatio 97.7 0.03 6.5E-07 58.8 26.7 70 126-195 200-269 (880)
35 PF10473 CENP-F_leu_zip: Leuci 97.7 0.0074 1.6E-07 50.6 17.7 124 120-253 11-134 (140)
36 PRK03918 chromosome segregatio 97.7 0.026 5.6E-07 59.3 25.7 31 207-237 667-697 (880)
37 PF13851 GAS: Growth-arrest sp 97.7 0.027 5.9E-07 49.8 21.8 100 169-268 91-191 (201)
38 KOG4643|consensus 97.5 0.089 1.9E-06 55.9 25.9 206 60-265 173-460 (1195)
39 PF00038 Filament: Intermediat 97.5 0.084 1.8E-06 48.9 27.5 37 121-157 77-113 (312)
40 PF15070 GOLGA2L5: Putative go 97.5 0.075 1.6E-06 54.5 25.0 46 68-113 19-64 (617)
41 PF05701 WEMBL: Weak chloropla 97.4 0.093 2E-06 52.7 24.4 129 129-260 284-412 (522)
42 KOG0977|consensus 97.4 0.13 2.8E-06 51.9 24.7 157 77-233 41-217 (546)
43 PRK09039 hypothetical protein; 97.4 0.041 9E-07 52.4 20.5 126 133-264 74-199 (343)
44 KOG0995|consensus 97.4 0.052 1.1E-06 54.5 21.3 157 90-266 233-392 (581)
45 COG1340 Uncharacterized archae 97.3 0.15 3.3E-06 47.6 24.9 96 167-263 134-229 (294)
46 PF14662 CCDC155: Coiled-coil 97.2 0.12 2.7E-06 45.3 23.4 175 66-250 10-188 (193)
47 KOG0933|consensus 97.2 0.16 3.4E-06 54.1 23.7 130 118-247 786-933 (1174)
48 KOG4674|consensus 97.2 0.28 6E-06 55.4 26.6 126 132-257 191-342 (1822)
49 PF10473 CENP-F_leu_zip: Leuci 97.2 0.11 2.5E-06 43.5 19.1 19 95-113 13-31 (140)
50 KOG4674|consensus 97.1 0.34 7.3E-06 54.8 26.1 62 68-135 1233-1294(1822)
51 KOG0964|consensus 97.1 0.38 8.3E-06 51.3 25.1 101 167-267 781-894 (1200)
52 KOG0971|consensus 97.1 0.13 2.9E-06 54.2 21.5 27 134-160 411-437 (1243)
53 KOG0999|consensus 97.1 0.32 7E-06 49.0 23.2 159 85-249 8-178 (772)
54 PF08317 Spc7: Spc7 kinetochor 97.0 0.17 3.7E-06 47.7 20.7 102 126-233 170-271 (325)
55 COG1340 Uncharacterized archae 97.0 0.29 6.2E-06 45.8 26.8 32 126-157 62-93 (294)
56 KOG1003|consensus 97.0 0.22 4.9E-06 43.9 23.6 51 88-144 21-71 (205)
57 KOG0977|consensus 97.0 0.13 2.8E-06 51.9 19.7 13 96-108 43-55 (546)
58 PF09789 DUF2353: Uncharacteri 96.9 0.37 8E-06 45.6 22.0 170 83-252 21-228 (319)
59 KOG0980|consensus 96.9 0.79 1.7E-05 48.5 25.1 43 68-110 341-383 (980)
60 PF05701 WEMBL: Weak chloropla 96.8 0.66 1.4E-05 46.7 30.7 21 136-156 214-234 (522)
61 PF12325 TMF_TATA_bd: TATA ele 96.8 0.045 9.8E-07 44.7 12.6 61 146-206 50-110 (120)
62 cd01207 Ena-Vasp Enabled-VASP- 96.8 0.00026 5.5E-09 57.1 -0.6 27 1-29 67-97 (111)
63 PF01576 Myosin_tail_1: Myosin 96.7 0.00037 8.1E-09 73.6 0.0 177 68-252 268-444 (859)
64 PRK04778 septation ring format 96.7 0.68 1.5E-05 47.0 23.4 70 142-211 350-423 (569)
65 PF09726 Macoilin: Transmembra 96.7 0.88 1.9E-05 47.5 24.4 30 220-249 622-651 (697)
66 PF05667 DUF812: Protein of un 96.7 0.83 1.8E-05 46.8 23.4 85 166-250 442-528 (594)
67 PF05622 HOOK: HOOK protein; 96.6 0.00051 1.1E-08 71.1 0.0 141 68-208 183-341 (713)
68 PF14915 CCDC144C: CCDC144C pr 96.6 0.65 1.4E-05 43.5 23.5 38 163-200 136-173 (305)
69 PF04849 HAP1_N: HAP1 N-termin 96.5 0.72 1.6E-05 43.4 20.8 136 120-261 168-303 (306)
70 PF05667 DUF812: Protein of un 96.5 1.2 2.5E-05 45.7 23.9 27 241-267 498-524 (594)
71 COG4942 Membrane-bound metallo 96.5 0.93 2E-05 44.5 26.0 22 223-244 220-241 (420)
72 KOG0964|consensus 96.5 1.5 3.3E-05 46.9 24.2 89 169-264 409-497 (1200)
73 PF08317 Spc7: Spc7 kinetochor 96.5 0.81 1.8E-05 43.2 25.9 87 165-251 178-268 (325)
74 smart00787 Spc7 Spc7 kinetocho 96.5 0.33 7.1E-06 45.9 17.8 134 85-232 132-265 (312)
75 PRK04778 septation ring format 96.4 0.91 2E-05 46.1 22.1 70 87-156 217-298 (569)
76 PF15070 GOLGA2L5: Putative go 96.4 1.2 2.7E-05 45.8 22.9 112 134-252 123-234 (617)
77 PF13870 DUF4201: Domain of un 96.4 0.53 1.1E-05 40.4 21.0 20 93-112 43-62 (177)
78 PF12325 TMF_TATA_bd: TATA ele 96.4 0.16 3.6E-06 41.5 13.4 29 133-161 16-44 (120)
79 KOG4643|consensus 96.4 1.8 4E-05 46.5 25.2 62 204-266 535-596 (1195)
80 KOG0978|consensus 96.4 1.5 3.3E-05 45.6 25.8 102 165-266 511-619 (698)
81 PF08614 ATG16: Autophagy prot 96.4 0.049 1.1E-06 47.6 11.1 79 176-254 100-178 (194)
82 PF12128 DUF3584: Protein of u 96.4 2.2 4.9E-05 47.1 27.0 115 78-201 274-389 (1201)
83 PF08614 ATG16: Autophagy prot 96.3 0.061 1.3E-06 47.1 11.4 33 81-113 70-102 (194)
84 TIGR03007 pepcterm_ChnLen poly 96.3 1.3 2.8E-05 43.8 21.7 117 88-210 164-293 (498)
85 KOG0979|consensus 96.2 1 2.2E-05 48.2 21.4 97 65-161 182-283 (1072)
86 PF05483 SCP-1: Synaptonemal c 96.2 1.9 4.2E-05 44.5 26.9 155 69-236 497-652 (786)
87 PF10481 CENP-F_N: Cenp-F N-te 96.1 0.31 6.8E-06 45.1 15.1 65 193-257 68-132 (307)
88 KOG0612|consensus 96.1 1.7 3.6E-05 47.6 22.4 30 219-248 622-651 (1317)
89 KOG0946|consensus 96.1 2.4 5.3E-05 44.6 23.2 48 218-265 790-837 (970)
90 PF01576 Myosin_tail_1: Myosin 96.0 0.0017 3.6E-08 68.8 0.0 165 81-254 338-509 (859)
91 PF00769 ERM: Ezrin/radixin/mo 96.0 0.57 1.2E-05 42.7 16.4 116 62-186 10-125 (246)
92 PF15619 Lebercilin: Ciliary p 96.0 1 2.2E-05 39.7 21.9 23 136-158 85-107 (194)
93 PF05911 DUF869: Plant protein 96.0 2.3 5E-05 44.9 22.5 142 125-266 595-758 (769)
94 PF09730 BicD: Microtubule-ass 96.0 2.6 5.6E-05 44.2 23.1 88 63-156 19-113 (717)
95 PF05622 HOOK: HOOK protein; 96.0 0.0019 4.1E-08 66.9 0.0 40 66-105 248-287 (713)
96 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.9 0.76 1.6E-05 37.8 17.7 27 204-230 103-129 (132)
97 TIGR02680 conserved hypothetic 95.9 3.4 7.4E-05 46.3 24.9 69 135-203 846-914 (1353)
98 KOG1003|consensus 95.9 1.1 2.4E-05 39.6 21.8 100 169-268 93-199 (205)
99 COG5185 HEC1 Protein involved 95.9 1.7 3.6E-05 43.3 19.6 27 87-113 266-292 (622)
100 PF09730 BicD: Microtubule-ass 95.9 2.8 6.1E-05 43.9 22.4 69 79-160 21-89 (717)
101 COG3883 Uncharacterized protei 95.9 1.5 3.3E-05 40.5 23.2 30 83-112 43-72 (265)
102 PF10186 Atg14: UV radiation r 95.8 1.5 3.2E-05 39.9 18.5 25 135-159 22-46 (302)
103 PF04156 IncA: IncA protein; 95.8 0.78 1.7E-05 39.5 15.6 21 136-156 84-104 (191)
104 smart00787 Spc7 Spc7 kinetocho 95.7 1.1 2.3E-05 42.5 17.2 88 163-250 171-262 (312)
105 KOG1029|consensus 95.7 1.4 3E-05 46.2 18.9 40 218-257 547-586 (1118)
106 PF10481 CENP-F_N: Cenp-F N-te 95.7 0.94 2E-05 42.0 16.1 149 87-248 20-190 (307)
107 TIGR02680 conserved hypothetic 95.6 5.3 0.00011 44.8 26.5 16 166-181 846-861 (1353)
108 PF13851 GAS: Growth-arrest sp 95.6 1.6 3.4E-05 38.7 20.4 27 211-237 141-167 (201)
109 KOG0999|consensus 95.5 3.2 7E-05 42.1 24.7 34 129-162 103-136 (772)
110 PF12329 TMF_DNA_bd: TATA elem 95.5 0.26 5.5E-06 36.9 10.0 69 183-251 3-71 (74)
111 PF06818 Fez1: Fez1; InterPro 95.5 0.86 1.9E-05 40.5 14.7 20 243-262 133-152 (202)
112 KOG1853|consensus 95.4 2.1 4.6E-05 39.4 20.2 22 169-190 103-124 (333)
113 PF15294 Leu_zip: Leucine zipp 95.3 2 4.4E-05 39.9 17.4 101 80-185 65-174 (278)
114 TIGR00634 recN DNA repair prot 95.3 3.7 8E-05 41.6 23.7 55 78-132 168-222 (563)
115 KOG0994|consensus 95.3 5.8 0.00013 43.6 26.3 16 14-29 1406-1425(1758)
116 COG4026 Uncharacterized protei 95.2 0.29 6.2E-06 44.2 10.9 75 193-267 129-203 (290)
117 KOG0976|consensus 95.2 5.2 0.00011 42.4 26.3 52 60-111 151-202 (1265)
118 KOG4673|consensus 95.2 4.8 0.0001 41.9 25.0 100 82-181 406-512 (961)
119 KOG0018|consensus 95.1 4.8 0.0001 43.7 21.3 61 204-264 414-474 (1141)
120 KOG0994|consensus 95.1 5.3 0.00012 43.8 21.5 40 219-258 1709-1748(1758)
121 KOG0946|consensus 95.1 4 8.7E-05 43.1 20.0 100 112-211 730-832 (970)
122 PF00769 ERM: Ezrin/radixin/mo 95.0 2.4 5.2E-05 38.6 16.8 85 173-257 42-126 (246)
123 PRK10884 SH3 domain-containing 95.0 0.38 8.2E-06 42.8 11.3 81 167-250 89-169 (206)
124 KOG2991|consensus 94.9 3.1 6.7E-05 38.5 17.4 94 138-231 134-247 (330)
125 PF05911 DUF869: Plant protein 94.9 6.1 0.00013 41.8 23.8 97 168-264 614-710 (769)
126 KOG1029|consensus 94.9 6.1 0.00013 41.7 22.0 33 200-232 473-505 (1118)
127 PF15619 Lebercilin: Ciliary p 94.9 2.5 5.5E-05 37.3 22.8 32 201-232 120-151 (194)
128 PF05557 MAD: Mitotic checkpoi 94.8 0.6 1.3E-05 48.6 13.9 36 226-261 605-640 (722)
129 KOG0979|consensus 94.8 7.3 0.00016 42.1 23.6 19 1-23 31-49 (1072)
130 TIGR01005 eps_transp_fam exopo 94.7 6.4 0.00014 41.1 24.2 46 165-210 289-334 (754)
131 PF09789 DUF2353: Uncharacteri 94.7 4.1 8.8E-05 38.7 19.7 47 203-249 130-176 (319)
132 COG0419 SbcC ATPase involved i 94.5 8.1 0.00018 41.4 25.9 13 176-188 366-378 (908)
133 KOG4360|consensus 94.5 4.1 8.9E-05 40.9 17.8 111 134-247 191-302 (596)
134 COG2433 Uncharacterized conser 94.5 0.78 1.7E-05 46.8 13.1 37 215-251 476-512 (652)
135 KOG0976|consensus 94.5 7.8 0.00017 41.1 23.3 27 126-152 141-167 (1265)
136 TIGR03007 pepcterm_ChnLen poly 94.5 5.5 0.00012 39.3 21.9 15 148-162 255-269 (498)
137 KOG0243|consensus 94.5 4.6 0.0001 43.8 19.3 43 60-102 372-428 (1041)
138 COG5185 HEC1 Protein involved 94.4 6.1 0.00013 39.5 23.3 85 68-162 275-359 (622)
139 COG2433 Uncharacterized conser 94.4 0.58 1.3E-05 47.6 12.0 28 206-233 481-508 (652)
140 PF14915 CCDC144C: CCDC144C pr 94.2 5 0.00011 37.7 24.8 45 65-112 64-108 (305)
141 TIGR01000 bacteriocin_acc bact 94.2 6.3 0.00014 38.7 22.6 28 83-110 95-122 (457)
142 KOG0018|consensus 94.2 10 0.00022 41.2 23.3 42 205-246 394-435 (1141)
143 KOG0980|consensus 94.1 9.5 0.00021 40.7 25.1 10 102-111 361-370 (980)
144 PF04111 APG6: Autophagy prote 94.1 1.5 3.2E-05 41.4 13.7 32 234-265 99-130 (314)
145 PRK15422 septal ring assembly 94.1 1.1 2.4E-05 33.9 10.2 72 180-251 6-77 (79)
146 PF13166 AAA_13: AAA domain 94.1 6.5 0.00014 40.5 19.4 45 206-250 410-454 (712)
147 PF10146 zf-C4H2: Zinc finger- 94.1 3 6.6E-05 37.7 14.9 22 174-195 42-63 (230)
148 PF10498 IFT57: Intra-flagella 94.0 1.8 3.8E-05 41.8 14.1 133 80-217 186-319 (359)
149 PF15254 CCDC14: Coiled-coil d 93.9 9.9 0.00021 40.1 20.0 89 173-268 464-556 (861)
150 COG3074 Uncharacterized protei 93.9 1.3 2.9E-05 32.8 10.0 71 180-250 6-76 (79)
151 COG4372 Uncharacterized protei 93.8 7.1 0.00015 38.1 25.9 150 93-255 145-294 (499)
152 KOG1937|consensus 93.7 8.1 0.00018 38.3 23.5 139 64-205 272-423 (521)
153 PF10498 IFT57: Intra-flagella 93.6 3.2 7E-05 40.0 15.1 54 52-111 186-239 (359)
154 PF08826 DMPK_coil: DMPK coile 93.6 0.76 1.6E-05 33.2 8.3 51 183-233 6-59 (61)
155 PF04012 PspA_IM30: PspA/IM30 93.6 4.8 0.0001 35.5 19.2 46 66-111 32-77 (221)
156 PF05557 MAD: Mitotic checkpoi 93.4 0.078 1.7E-06 55.1 4.1 82 68-162 347-428 (722)
157 PF05483 SCP-1: Synaptonemal c 93.4 11 0.00024 39.2 26.7 160 82-250 468-652 (786)
158 KOG1853|consensus 93.4 6.4 0.00014 36.4 20.8 29 133-161 52-80 (333)
159 KOG4673|consensus 93.3 12 0.00026 39.1 21.8 112 127-254 403-515 (961)
160 PF14197 Cep57_CLD_2: Centroso 93.3 1.4 3.1E-05 32.5 9.5 64 169-232 3-66 (69)
161 PRK10869 recombination and rep 93.3 11 0.00023 38.4 22.6 50 83-132 169-218 (553)
162 PF10146 zf-C4H2: Zinc finger- 93.2 5.8 0.00013 35.9 15.2 71 186-256 33-103 (230)
163 PF06818 Fez1: Fez1; InterPro 93.2 2.4 5.3E-05 37.7 12.4 75 163-237 30-104 (202)
164 PF09787 Golgin_A5: Golgin sub 93.2 10 0.00022 38.0 23.7 176 81-266 183-380 (511)
165 KOG0963|consensus 93.2 12 0.00025 38.6 26.3 26 88-113 178-203 (629)
166 KOG4360|consensus 93.2 9.9 0.00022 38.3 17.7 132 135-267 161-301 (596)
167 PF13870 DUF4201: Domain of un 93.1 5 0.00011 34.3 21.6 126 84-217 5-130 (177)
168 PF04111 APG6: Autophagy prote 92.9 3.4 7.3E-05 39.0 13.8 22 132-153 15-36 (314)
169 KOG4302|consensus 92.9 5 0.00011 41.6 15.9 141 126-266 54-214 (660)
170 PRK10698 phage shock protein P 92.9 6.8 0.00015 35.1 20.5 93 67-160 34-126 (222)
171 PF15397 DUF4618: Domain of un 92.8 7.8 0.00017 35.8 25.5 142 67-214 16-164 (258)
172 PRK10884 SH3 domain-containing 92.7 2.3 4.9E-05 37.9 11.8 23 132-154 92-114 (206)
173 TIGR02977 phageshock_pspA phag 92.7 6.9 0.00015 34.8 19.9 43 68-110 35-77 (219)
174 PF05010 TACC: Transforming ac 92.7 7.1 0.00015 34.8 24.3 29 85-113 23-51 (207)
175 COG4477 EzrA Negative regulato 92.7 13 0.00027 37.7 20.2 59 190-248 352-410 (570)
176 PF13514 AAA_27: AAA domain 92.7 19 0.0004 39.6 24.8 105 83-187 741-870 (1111)
177 KOG4593|consensus 92.6 15 0.00032 38.3 23.3 54 81-144 271-324 (716)
178 TIGR03185 DNA_S_dndD DNA sulfu 92.5 14 0.00031 38.0 26.5 32 81-112 219-250 (650)
179 PF11932 DUF3450: Protein of u 92.5 4.5 9.6E-05 36.6 13.6 49 130-178 67-116 (251)
180 COG3883 Uncharacterized protei 92.4 9.2 0.0002 35.4 20.1 66 87-158 33-98 (265)
181 KOG4809|consensus 92.2 13 0.00028 37.8 17.2 48 167-214 362-409 (654)
182 PF12795 MscS_porin: Mechanose 92.1 8.6 0.00019 34.5 24.5 124 121-254 80-212 (240)
183 PF09304 Cortex-I_coil: Cortex 92.1 5.3 0.00012 32.0 13.4 31 204-234 49-79 (107)
184 PF06005 DUF904: Protein of un 92.0 3.9 8.5E-05 30.4 10.5 64 181-251 7-70 (72)
185 KOG0249|consensus 92.0 18 0.0004 38.0 18.9 39 70-108 90-128 (916)
186 COG0419 SbcC ATPase involved i 91.9 20 0.00044 38.4 24.9 19 165-183 330-348 (908)
187 PF06005 DUF904: Protein of un 91.8 4.1 9E-05 30.3 10.4 62 196-257 8-69 (72)
188 PF10186 Atg14: UV radiation r 91.8 9.6 0.00021 34.5 19.4 19 126-144 27-45 (302)
189 COG4942 Membrane-bound metallo 91.7 14 0.00031 36.3 26.5 13 89-101 42-54 (420)
190 PF06160 EzrA: Septation ring 91.5 18 0.00038 36.9 24.0 51 167-217 347-397 (560)
191 PF07106 TBPIP: Tat binding pr 91.5 0.98 2.1E-05 38.4 7.7 13 142-154 118-130 (169)
192 TIGR01005 eps_transp_fam exopo 91.5 20 0.00043 37.4 21.1 7 137-143 241-247 (754)
193 PF09304 Cortex-I_coil: Cortex 91.3 6.5 0.00014 31.6 13.3 23 169-191 49-71 (107)
194 PF10267 Tmemb_cc2: Predicted 91.3 11 0.00024 36.8 15.6 42 199-240 276-318 (395)
195 PF13514 AAA_27: AAA domain 91.3 26 0.00057 38.5 27.4 34 76-109 678-711 (1111)
196 KOG0962|consensus 91.3 28 0.00061 38.8 20.8 89 82-183 196-287 (1294)
197 PF07106 TBPIP: Tat binding pr 91.2 1.4 3.1E-05 37.4 8.5 40 186-225 94-135 (169)
198 PF11559 ADIP: Afadin- and alp 91.1 8 0.00017 32.1 14.4 69 181-249 55-123 (151)
199 PF02994 Transposase_22: L1 tr 91.1 0.62 1.4E-05 44.9 6.8 45 169-213 142-186 (370)
200 PF10168 Nup88: Nuclear pore c 91.0 23 0.0005 37.3 19.2 30 235-264 686-715 (717)
201 PF15290 Syntaphilin: Golgi-lo 91.0 9 0.0002 35.8 13.7 85 73-192 56-145 (305)
202 KOG0612|consensus 90.9 30 0.00064 38.4 23.8 13 17-29 432-444 (1317)
203 PF04582 Reo_sigmaC: Reovirus 90.9 0.51 1.1E-05 44.8 5.8 8 98-105 34-41 (326)
204 PRK11281 hypothetical protein; 90.9 30 0.00065 38.3 23.8 21 211-231 232-252 (1113)
205 PF15290 Syntaphilin: Golgi-lo 90.8 5.3 0.00012 37.2 12.1 23 181-203 78-100 (305)
206 PF06160 EzrA: Septation ring 90.8 21 0.00045 36.4 23.6 173 81-264 56-238 (560)
207 PF08172 CASP_C: CASP C termin 90.8 3.4 7.4E-05 37.8 11.0 56 163-225 78-133 (248)
208 COG3074 Uncharacterized protei 90.7 3.2 6.9E-05 30.9 8.6 64 76-145 9-72 (79)
209 KOG0243|consensus 90.7 14 0.0003 40.2 16.7 96 140-235 404-512 (1041)
210 KOG0963|consensus 90.6 23 0.00049 36.5 25.1 79 122-200 185-264 (629)
211 PF15254 CCDC14: Coiled-coil d 90.6 26 0.00055 37.1 21.1 89 169-257 467-559 (861)
212 KOG1937|consensus 90.4 20 0.00044 35.6 21.4 128 121-252 295-428 (521)
213 PRK15422 septal ring assembly 90.1 3.7 7.9E-05 31.2 8.7 64 76-145 9-72 (79)
214 PF12240 Angiomotin_C: Angiomo 90.1 7.6 0.00016 34.6 12.0 32 206-237 129-160 (205)
215 PF15450 DUF4631: Domain of un 90.0 23 0.00051 35.7 25.9 52 218-269 410-469 (531)
216 PF02403 Seryl_tRNA_N: Seryl-t 89.9 2.5 5.4E-05 33.1 8.3 55 147-201 50-104 (108)
217 PF07889 DUF1664: Protein of u 89.7 6.8 0.00015 32.3 10.8 57 176-232 66-122 (126)
218 PF14197 Cep57_CLD_2: Centroso 89.5 3.3 7.1E-05 30.6 8.0 26 129-154 8-33 (69)
219 PF07889 DUF1664: Protein of u 89.5 11 0.00023 31.1 11.8 35 192-226 89-123 (126)
220 KOG0249|consensus 89.2 32 0.0007 36.2 19.1 24 120-143 106-129 (916)
221 PRK10929 putative mechanosensi 89.0 41 0.00089 37.2 24.8 29 121-149 104-132 (1109)
222 KOG0804|consensus 89.0 26 0.00057 34.9 16.9 26 172-197 362-387 (493)
223 COG4026 Uncharacterized protei 88.8 2.9 6.4E-05 37.9 8.6 28 134-161 136-163 (290)
224 KOG0982|consensus 88.8 26 0.00056 34.7 20.3 72 163-234 317-388 (502)
225 KOG0288|consensus 88.8 23 0.0005 34.9 15.2 25 132-156 12-36 (459)
226 KOG0804|consensus 88.6 14 0.0003 36.8 13.7 29 123-151 379-407 (493)
227 PF07989 Microtub_assoc: Micro 88.6 5.1 0.00011 30.0 8.6 69 88-156 3-73 (75)
228 KOG1899|consensus 88.6 7.9 0.00017 40.0 12.4 28 239-266 236-263 (861)
229 PF09755 DUF2046: Uncharacteri 88.3 23 0.00051 33.5 23.5 124 75-206 24-149 (310)
230 COG0497 RecN ATPase involved i 88.2 33 0.00071 35.1 23.7 52 81-132 167-218 (557)
231 PRK10246 exonuclease subunit S 87.9 46 0.001 36.5 25.1 17 169-185 782-798 (1047)
232 PF10205 KLRAQ: Predicted coil 87.8 6.2 0.00013 31.4 8.9 63 84-152 11-73 (102)
233 PF13166 AAA_13: AAA domain 87.5 37 0.00081 34.9 23.6 74 133-206 322-398 (712)
234 COG4372 Uncharacterized protei 87.4 31 0.00067 33.9 24.3 134 126-263 158-291 (499)
235 KOG0982|consensus 87.3 32 0.0007 34.1 21.9 39 167-205 307-345 (502)
236 PF05700 BCAS2: Breast carcino 87.1 22 0.00047 31.8 15.6 103 134-236 98-212 (221)
237 PF10168 Nup88: Nuclear pore c 86.9 44 0.00096 35.2 20.1 15 207-221 647-661 (717)
238 PF12329 TMF_DNA_bd: TATA elem 86.9 7.8 0.00017 28.8 8.7 22 139-160 4-25 (74)
239 PF10805 DUF2730: Protein of u 86.6 6.5 0.00014 31.2 8.6 28 175-202 46-75 (106)
240 PRK11281 hypothetical protein; 85.9 62 0.0013 35.9 24.7 123 137-264 196-329 (1113)
241 PF12795 MscS_porin: Mechanose 85.8 26 0.00056 31.4 20.5 33 126-158 106-138 (240)
242 COG1730 GIM5 Predicted prefold 85.6 21 0.00045 30.2 13.5 27 133-159 6-32 (145)
243 PF10234 Cluap1: Clusterin-ass 85.6 31 0.00066 32.1 14.9 64 197-260 174-237 (267)
244 PF15035 Rootletin: Ciliary ro 85.4 22 0.00047 31.1 12.0 54 204-257 65-118 (182)
245 KOG4809|consensus 85.3 47 0.001 33.9 19.3 108 83-196 329-446 (654)
246 PF04012 PspA_IM30: PspA/IM30 85.2 25 0.00055 30.8 20.3 40 74-113 26-65 (221)
247 PRK10929 putative mechanosensi 85.1 68 0.0015 35.6 23.7 120 145-264 178-309 (1109)
248 TIGR03017 EpsF chain length de 84.8 39 0.00085 32.7 23.5 43 166-208 256-298 (444)
249 PLN02939 transferase, transfer 84.8 65 0.0014 35.2 22.7 60 86-145 220-283 (977)
250 cd00837 EVH1 EVH1 (Enabled, Va 84.7 0.11 2.4E-06 41.0 -2.4 22 1-24 64-85 (104)
251 PF07798 DUF1640: Protein of u 84.3 26 0.00056 30.1 14.5 25 164-188 73-97 (177)
252 PF00568 WH1: WH1 domain; Int 84.2 0.078 1.7E-06 42.3 -3.5 22 1-24 71-92 (111)
253 PF11559 ADIP: Afadin- and alp 83.7 24 0.00051 29.3 15.9 15 218-232 131-145 (151)
254 PF02994 Transposase_22: L1 tr 83.7 3.7 8E-05 39.6 7.1 16 176-191 142-157 (370)
255 PF06785 UPF0242: Uncharacteri 83.2 45 0.00097 32.1 17.4 27 133-159 127-153 (401)
256 PF09728 Taxilin: Myosin-like 82.9 42 0.00092 31.6 24.3 93 168-264 213-305 (309)
257 TIGR02231 conserved hypothetic 82.4 20 0.00043 35.9 12.0 30 132-161 70-99 (525)
258 PF05010 TACC: Transforming ac 82.3 36 0.00078 30.4 24.5 30 235-264 169-201 (207)
259 TIGR02231 conserved hypothetic 82.3 25 0.00055 35.2 12.7 77 79-157 72-148 (525)
260 PF05266 DUF724: Protein of un 82.3 34 0.00074 30.0 13.9 19 1-22 3-21 (190)
261 KOG4005|consensus 82.2 16 0.00035 33.4 10.0 63 175-237 87-149 (292)
262 TIGR01000 bacteriocin_acc bact 82.0 54 0.0012 32.2 23.4 27 130-156 169-195 (457)
263 PF06810 Phage_GP20: Phage min 82.0 15 0.00032 31.2 9.4 52 165-216 14-68 (155)
264 cd00632 Prefoldin_beta Prefold 82.0 22 0.00049 27.7 11.6 27 167-193 66-92 (105)
265 PF13747 DUF4164: Domain of un 81.8 22 0.00047 27.4 11.1 6 186-191 54-59 (89)
266 smart00461 WH1 WASP homology r 81.8 0.16 3.6E-06 40.3 -2.5 22 1-24 66-87 (106)
267 KOG0962|consensus 81.8 96 0.0021 34.9 22.6 68 133-200 223-290 (1294)
268 PF07111 HCR: Alpha helical co 81.6 74 0.0016 33.4 24.1 86 59-157 473-566 (739)
269 PF12761 End3: Actin cytoskele 81.5 22 0.00047 31.5 10.4 93 87-198 98-194 (195)
270 PF05384 DegS: Sensor protein 81.0 34 0.00075 29.3 21.1 78 184-261 76-153 (159)
271 PF05377 FlaC_arch: Flagella a 80.9 5.9 0.00013 28.1 5.4 26 183-208 5-30 (55)
272 PF12777 MT: Microtubule-bindi 80.9 11 0.00023 35.9 9.0 76 169-244 219-294 (344)
273 PF09738 DUF2051: Double stran 80.6 52 0.0011 31.1 13.5 54 197-250 110-163 (302)
274 PF05529 Bap31: B-cell recepto 80.5 11 0.00023 32.7 8.2 36 126-161 154-189 (192)
275 PF12777 MT: Microtubule-bindi 80.3 12 0.00026 35.6 9.1 90 176-265 219-308 (344)
276 KOG1760|consensus 80.2 14 0.00029 30.5 8.0 32 130-161 27-58 (131)
277 PF09738 DUF2051: Double stran 80.0 55 0.0012 30.9 13.6 81 177-257 83-163 (302)
278 PF02403 Seryl_tRNA_N: Seryl-t 79.5 27 0.00059 27.1 10.1 71 76-156 27-97 (108)
279 PF05266 DUF724: Protein of un 79.4 43 0.00093 29.4 13.5 23 94-116 64-86 (190)
280 KOG1899|consensus 79.3 59 0.0013 33.9 13.9 33 165-197 182-214 (861)
281 KOG1962|consensus 79.0 23 0.00051 31.8 9.9 38 124-161 149-186 (216)
282 PF05700 BCAS2: Breast carcino 78.9 47 0.001 29.6 15.0 67 86-161 98-164 (221)
283 PF07798 DUF1640: Protein of u 78.9 41 0.00088 28.8 16.6 10 222-231 140-149 (177)
284 PF07926 TPR_MLP1_2: TPR/MLP1/ 78.7 34 0.00074 27.9 18.5 23 134-156 11-33 (132)
285 PF15456 Uds1: Up-regulated Du 78.6 33 0.00072 28.1 10.1 23 134-156 23-45 (124)
286 PRK04406 hypothetical protein; 78.5 22 0.00047 26.6 8.2 40 207-246 12-51 (75)
287 PRK02119 hypothetical protein; 78.0 23 0.0005 26.3 8.2 40 207-246 10-49 (73)
288 PF15188 CCDC-167: Coiled-coil 77.9 14 0.00031 28.4 7.2 28 236-263 38-65 (85)
289 KOG4603|consensus 77.4 24 0.00053 30.8 9.2 6 66-71 13-18 (201)
290 KOG4302|consensus 77.4 98 0.0021 32.4 18.3 118 81-200 57-189 (660)
291 PF10212 TTKRSYEDQ: Predicted 77.1 62 0.0013 32.8 13.2 13 97-109 418-430 (518)
292 PF08826 DMPK_coil: DMPK coile 76.8 25 0.00055 25.3 9.3 30 208-237 27-56 (61)
293 KOG0288|consensus 76.6 82 0.0018 31.1 15.7 46 134-182 28-73 (459)
294 PF05278 PEARLI-4: Arabidopsis 75.9 68 0.0015 29.8 15.0 46 192-237 200-245 (269)
295 PF10267 Tmemb_cc2: Predicted 75.6 85 0.0018 30.8 13.5 32 82-113 209-240 (395)
296 PRK10698 phage shock protein P 75.5 60 0.0013 29.0 21.3 37 76-112 29-65 (222)
297 TIGR01010 BexC_CtrB_KpsE polys 75.5 74 0.0016 30.1 14.7 9 16-24 64-72 (362)
298 PRK02119 hypothetical protein; 75.5 30 0.00066 25.6 8.2 51 210-260 6-56 (73)
299 cd00632 Prefoldin_beta Prefold 75.4 37 0.00079 26.5 11.6 23 218-240 75-97 (105)
300 PF05546 She9_MDM33: She9 / Md 74.9 38 0.00082 30.3 10.0 49 221-269 33-81 (207)
301 TIGR00293 prefoldin, archaeal 74.7 40 0.00087 26.9 9.5 17 140-156 6-22 (126)
302 PF06120 Phage_HK97_TLTM: Tail 74.7 78 0.0017 29.9 18.7 67 86-160 42-108 (301)
303 PF03962 Mnd1: Mnd1 family; I 74.6 58 0.0013 28.4 12.1 60 84-150 68-127 (188)
304 KOG2264|consensus 74.3 24 0.00053 36.3 9.6 58 174-231 89-146 (907)
305 PF09787 Golgin_A5: Golgin sub 74.1 1E+02 0.0022 31.0 22.7 42 217-258 389-430 (511)
306 PF10046 BLOC1_2: Biogenesis o 73.5 40 0.00086 26.3 8.9 8 177-184 72-79 (99)
307 PLN02678 seryl-tRNA synthetase 73.1 22 0.00049 35.3 9.1 75 121-202 35-109 (448)
308 PRK00736 hypothetical protein; 73.0 31 0.00066 25.2 7.6 18 214-231 13-30 (68)
309 PRK03947 prefoldin subunit alp 72.8 50 0.0011 26.9 13.3 23 134-156 7-29 (140)
310 PF15066 CAGE1: Cancer-associa 72.7 1.1E+02 0.0024 30.8 16.6 87 62-161 388-474 (527)
311 PRK04406 hypothetical protein; 72.1 39 0.00084 25.3 8.6 47 211-257 9-55 (75)
312 PF15456 Uds1: Up-regulated Du 72.0 54 0.0012 26.9 10.6 71 167-238 32-106 (124)
313 PRK02793 phi X174 lysis protei 71.9 38 0.00082 25.0 8.0 39 208-246 10-48 (72)
314 KOG1962|consensus 71.7 49 0.0011 29.8 10.0 6 149-154 136-141 (216)
315 PF07439 DUF1515: Protein of u 71.6 30 0.00065 27.9 7.7 59 138-196 6-65 (112)
316 PRK00846 hypothetical protein; 71.6 41 0.00089 25.4 8.7 45 204-248 11-55 (77)
317 PRK10803 tol-pal system protei 71.5 33 0.00071 31.5 9.2 65 176-247 38-102 (263)
318 PF04102 SlyX: SlyX; InterPro 71.5 21 0.00045 26.1 6.4 23 134-156 5-27 (69)
319 PRK09343 prefoldin subunit bet 71.4 53 0.0011 26.6 12.2 26 220-245 85-110 (121)
320 PF06156 DUF972: Protein of un 71.3 21 0.00045 28.6 6.9 25 133-157 8-32 (107)
321 PRK04325 hypothetical protein; 71.2 40 0.00086 25.0 8.1 30 208-237 11-40 (74)
322 PF05008 V-SNARE: Vesicle tran 70.9 38 0.00082 24.7 8.0 55 174-234 21-75 (79)
323 PF05278 PEARLI-4: Arabidopsis 70.9 91 0.002 29.0 12.1 42 186-227 215-256 (269)
324 TIGR00634 recN DNA repair prot 70.4 1.3E+02 0.0028 30.5 21.6 33 235-267 347-379 (563)
325 PF15397 DUF4618: Domain of un 69.9 93 0.002 28.8 20.9 37 223-259 189-225 (258)
326 KOG4571|consensus 69.7 22 0.00047 33.4 7.6 42 198-239 247-288 (294)
327 PF10205 KLRAQ: Predicted coil 69.5 56 0.0012 26.1 10.1 27 206-232 47-73 (102)
328 PRK02793 phi X174 lysis protei 69.1 40 0.00087 24.9 7.6 49 211-259 6-54 (72)
329 PRK09841 cryptic autophosphory 68.6 1.6E+02 0.0034 30.9 16.6 22 133-154 274-295 (726)
330 PF13747 DUF4164: Domain of un 68.5 52 0.0011 25.3 11.7 6 208-213 41-46 (89)
331 TIGR00293 prefoldin, archaeal 67.9 36 0.00078 27.2 7.8 22 135-156 8-29 (126)
332 PRK00846 hypothetical protein; 67.9 50 0.0011 24.9 8.9 54 208-261 8-61 (77)
333 PF04859 DUF641: Plant protein 67.8 17 0.00037 30.2 5.9 37 167-203 83-119 (131)
334 PF08172 CASP_C: CASP C termin 67.7 77 0.0017 29.0 10.7 31 82-112 3-33 (248)
335 PF09744 Jnk-SapK_ap_N: JNK_SA 67.3 80 0.0017 27.0 14.2 46 204-249 94-139 (158)
336 PRK10361 DNA recombination pro 67.2 1.4E+02 0.0031 30.0 23.6 25 218-242 138-162 (475)
337 TIGR03752 conj_TIGR03752 integ 66.6 71 0.0015 32.0 10.9 17 134-150 60-76 (472)
338 COG1382 GimC Prefoldin, chaper 66.5 71 0.0015 26.1 11.7 29 220-248 77-105 (119)
339 COG2900 SlyX Uncharacterized p 66.5 52 0.0011 24.6 7.9 52 210-261 5-56 (72)
340 PF06008 Laminin_I: Laminin Do 66.4 1E+02 0.0022 27.9 26.4 31 131-161 85-115 (264)
341 KOG3433|consensus 66.3 79 0.0017 27.9 9.9 48 201-248 97-144 (203)
342 PF04859 DUF641: Plant protein 66.3 22 0.00047 29.6 6.2 31 126-156 87-117 (131)
343 PLN02939 transferase, transfer 66.0 2.1E+02 0.0046 31.4 22.7 110 86-197 157-290 (977)
344 COG3206 GumC Uncharacterized p 65.9 1.4E+02 0.003 29.3 19.4 41 166-206 287-327 (458)
345 PRK03947 prefoldin subunit alp 65.9 72 0.0016 26.0 13.4 44 218-261 92-135 (140)
346 KOG0239|consensus 65.7 1.8E+02 0.0039 30.5 18.5 39 68-106 111-149 (670)
347 PRK00736 hypothetical protein; 65.5 50 0.0011 24.1 7.8 43 213-255 5-47 (68)
348 PF04728 LPP: Lipoprotein leuc 65.4 47 0.001 23.6 8.3 46 210-255 7-52 (56)
349 PF10234 Cluap1: Clusterin-ass 65.2 1.2E+02 0.0026 28.2 15.2 67 201-267 171-237 (267)
350 PF15066 CAGE1: Cancer-associa 64.9 1.6E+02 0.0035 29.7 16.2 17 96-112 321-337 (527)
351 PRK04325 hypothetical protein; 64.9 55 0.0012 24.3 8.1 47 211-257 7-53 (74)
352 TIGR02977 phageshock_pspA phag 64.6 1E+02 0.0022 27.3 22.5 37 76-112 29-65 (219)
353 cd00890 Prefoldin Prefoldin is 64.3 69 0.0015 25.2 11.4 17 140-156 6-22 (129)
354 PF06632 XRCC4: DNA double-str 64.3 1.4E+02 0.003 28.7 12.1 60 207-266 145-205 (342)
355 KOG4196|consensus 64.2 84 0.0018 26.2 9.5 71 83-160 45-115 (135)
356 PRK11519 tyrosine kinase; Prov 64.2 1.9E+02 0.0041 30.3 17.9 22 133-154 274-295 (719)
357 PRK13729 conjugal transfer pil 64.0 23 0.00049 35.5 6.9 25 133-157 97-121 (475)
358 KOG2264|consensus 63.9 67 0.0015 33.2 10.2 60 202-261 89-148 (907)
359 PRK12704 phosphodiesterase; Pr 63.8 1.7E+02 0.0037 29.6 14.1 33 228-260 118-150 (520)
360 PF13863 DUF4200: Domain of un 63.7 72 0.0016 25.2 15.2 23 134-156 8-30 (126)
361 PF10458 Val_tRNA-synt_C: Valy 63.1 33 0.00071 24.6 6.0 62 84-158 3-64 (66)
362 KOG4603|consensus 62.9 1.1E+02 0.0023 26.9 13.0 25 166-190 118-142 (201)
363 PF03962 Mnd1: Mnd1 family; I 62.8 1.1E+02 0.0023 26.8 14.1 20 211-230 108-127 (188)
364 PRK13169 DNA replication intia 62.2 39 0.00084 27.2 6.8 26 133-158 8-33 (110)
365 PF14257 DUF4349: Domain of un 61.9 35 0.00076 30.9 7.4 28 129-156 128-155 (262)
366 TIGR03319 YmdA_YtgF conserved 61.8 1.9E+02 0.004 29.3 14.0 28 231-258 115-142 (514)
367 PF05529 Bap31: B-cell recepto 61.7 68 0.0015 27.6 8.9 35 171-205 154-188 (192)
368 PF05377 FlaC_arch: Flagella a 61.3 53 0.0012 23.3 6.5 33 211-243 5-37 (55)
369 PRK05431 seryl-tRNA synthetase 61.0 55 0.0012 32.1 9.1 73 121-200 30-102 (425)
370 PF10779 XhlA: Haemolysin XhlA 60.9 54 0.0012 23.9 6.9 48 187-234 1-48 (71)
371 COG1382 GimC Prefoldin, chaper 60.7 93 0.002 25.5 13.7 36 211-246 75-110 (119)
372 PF04100 Vps53_N: Vps53-like, 60.3 1.5E+02 0.0033 28.7 11.8 20 135-154 20-39 (383)
373 cd00890 Prefoldin Prefoldin is 60.2 83 0.0018 24.8 9.7 19 90-108 11-29 (129)
374 KOG4593|consensus 60.0 2.3E+02 0.005 29.9 26.6 19 245-263 279-297 (716)
375 PF09755 DUF2046: Uncharacteri 59.6 1.6E+02 0.0035 28.0 25.8 9 151-159 139-147 (310)
376 KOG0244|consensus 59.6 46 0.00099 35.9 8.6 101 167-267 463-563 (913)
377 PF08647 BRE1: BRE1 E3 ubiquit 59.4 81 0.0017 24.4 12.2 29 173-201 26-54 (96)
378 PF02050 FliJ: Flagellar FliJ 59.3 75 0.0016 24.0 12.7 85 174-258 15-104 (123)
379 PF06785 UPF0242: Uncharacteri 59.1 1.8E+02 0.0038 28.2 21.5 19 59-80 51-69 (401)
380 PF06156 DUF972: Protein of un 59.0 56 0.0012 26.1 7.2 41 194-234 17-57 (107)
381 TIGR00414 serS seryl-tRNA synt 58.8 63 0.0014 31.6 9.0 72 123-201 34-106 (418)
382 PF14739 DUF4472: Domain of un 58.8 95 0.0021 25.0 10.1 99 64-181 10-108 (108)
383 PF12761 End3: Actin cytoskele 58.3 99 0.0021 27.4 9.2 21 137-157 100-120 (195)
384 COG1842 PspA Phage shock prote 58.1 1.4E+02 0.0031 26.9 18.3 8 224-231 170-177 (225)
385 PF14073 Cep57_CLD: Centrosome 58.1 1.3E+02 0.0028 26.3 11.9 92 176-267 9-122 (178)
386 PF05531 NPV_P10: Nucleopolyhe 58.0 69 0.0015 24.1 7.0 22 168-189 39-60 (75)
387 PF07111 HCR: Alpha helical co 57.8 2.6E+02 0.0055 29.6 25.0 47 163-209 161-207 (739)
388 COG1842 PspA Phage shock prote 57.7 1.5E+02 0.0032 26.8 18.6 16 174-189 116-131 (225)
389 COG5570 Uncharacterized small 57.7 51 0.0011 23.2 5.8 53 91-156 4-56 (57)
390 KOG3433|consensus 57.3 1.4E+02 0.003 26.4 12.0 61 200-260 82-142 (203)
391 KOG0240|consensus 57.2 2.4E+02 0.0052 29.1 18.2 29 84-112 340-368 (607)
392 PRK13169 DNA replication intia 56.9 63 0.0014 26.0 7.2 41 192-232 15-55 (110)
393 PF05531 NPV_P10: Nucleopolyhe 56.8 83 0.0018 23.7 7.5 22 204-225 40-61 (75)
394 PF03961 DUF342: Protein of un 56.6 68 0.0015 31.5 8.9 27 134-160 335-361 (451)
395 PF10212 TTKRSYEDQ: Predicted 56.5 2.3E+02 0.0051 28.8 14.2 12 93-104 310-321 (518)
396 PLN02320 seryl-tRNA synthetase 56.2 69 0.0015 32.4 8.9 39 164-202 130-168 (502)
397 PRK14011 prefoldin subunit alp 56.1 1.2E+02 0.0026 25.4 10.9 23 134-156 4-26 (144)
398 PF15188 CCDC-167: Coiled-coil 56.1 45 0.00098 25.7 5.9 19 179-197 44-62 (85)
399 PF10211 Ax_dynein_light: Axon 56.1 1.4E+02 0.003 26.0 12.3 97 94-190 86-189 (189)
400 KOG2991|consensus 55.9 1.8E+02 0.0038 27.2 21.2 147 65-213 109-264 (330)
401 PF11180 DUF2968: Protein of u 55.8 95 0.0021 27.5 8.6 98 52-169 93-191 (192)
402 COG4985 ABC-type phosphate tra 55.5 1.7E+02 0.0036 27.0 10.3 39 137-177 161-199 (289)
403 PF01486 K-box: K-box region; 55.5 94 0.002 23.9 8.7 23 134-156 13-35 (100)
404 PF08657 DASH_Spc34: DASH comp 55.2 49 0.0011 30.5 7.1 27 169-195 185-211 (259)
405 PF02050 FliJ: Flagellar FliJ 54.8 90 0.002 23.5 13.4 75 134-208 6-82 (123)
406 PF05103 DivIVA: DivIVA protei 54.7 14 0.0003 29.5 3.2 32 130-161 22-53 (131)
407 PF09763 Sec3_C: Exocyst compl 54.4 2.7E+02 0.0059 29.0 19.3 106 85-199 5-110 (701)
408 TIGR03752 conj_TIGR03752 integ 54.1 1.9E+02 0.004 29.2 11.3 20 172-191 81-100 (472)
409 PRK10803 tol-pal system protei 53.9 1.3E+02 0.0027 27.6 9.6 44 210-253 58-101 (263)
410 PF07851 TMPIT: TMPIT-like pro 53.8 1.5E+02 0.0031 28.5 10.2 27 167-193 64-90 (330)
411 PF04799 Fzo_mitofusin: fzo-li 53.7 85 0.0019 27.3 7.9 39 145-183 125-163 (171)
412 PF07439 DUF1515: Protein of u 53.2 1E+02 0.0022 24.9 7.7 62 92-162 8-69 (112)
413 PF08657 DASH_Spc34: DASH comp 51.4 39 0.00084 31.2 5.8 21 133-153 194-214 (259)
414 PF09763 Sec3_C: Exocyst compl 51.3 1.5E+02 0.0032 30.9 10.8 43 163-205 29-71 (701)
415 KOG2751|consensus 51.2 2.6E+02 0.0057 27.8 15.3 47 137-183 147-195 (447)
416 KOG3647|consensus 50.9 2.2E+02 0.0047 26.8 15.9 59 202-267 122-180 (338)
417 PF00435 Spectrin: Spectrin re 50.2 94 0.002 22.4 12.2 55 134-188 42-97 (105)
418 PF01486 K-box: K-box region; 50.1 1.2E+02 0.0025 23.4 9.9 30 83-112 10-39 (100)
419 KOG4787|consensus 50.0 3.2E+02 0.007 28.5 21.2 193 69-264 325-545 (852)
420 PF07989 Microtub_assoc: Micro 49.4 1.1E+02 0.0023 22.8 8.5 18 140-157 7-24 (75)
421 KOG4421|consensus 49.2 2.2E+02 0.0047 28.1 10.6 61 85-151 29-89 (637)
422 PF15030 DUF4527: Protein of u 48.1 1.9E+02 0.0042 26.7 9.6 11 179-189 24-34 (277)
423 PF06428 Sec2p: GDP/GTP exchan 48.1 16 0.00036 28.9 2.5 33 218-250 49-81 (100)
424 PF06120 Phage_HK97_TLTM: Tail 48.0 2.5E+02 0.0054 26.6 17.0 119 128-251 50-172 (301)
425 PF09728 Taxilin: Myosin-like 47.4 2.5E+02 0.0054 26.4 26.6 113 76-197 41-161 (309)
426 PF06698 DUF1192: Protein of u 47.3 34 0.00073 24.6 3.7 23 134-156 22-44 (59)
427 COG4694 Uncharacterized protei 46.8 3.6E+02 0.0078 28.1 15.2 155 74-229 327-496 (758)
428 TIGR00309 V_ATPase_subD H(+)-t 46.4 69 0.0015 28.2 6.5 50 134-185 144-193 (209)
429 TIGR02132 phaR_Bmeg polyhydrox 46.4 2.1E+02 0.0045 25.2 9.7 64 167-230 75-138 (189)
430 PF06008 Laminin_I: Laminin Do 46.1 2.3E+02 0.0049 25.6 26.2 62 189-250 182-243 (264)
431 PF04949 Transcrip_act: Transc 46.0 1.9E+02 0.0041 24.7 16.0 13 140-152 56-68 (159)
432 PF07544 Med9: RNA polymerase 45.8 1.3E+02 0.0028 22.7 7.3 29 131-159 50-78 (83)
433 PF05103 DivIVA: DivIVA protei 45.6 28 0.0006 27.7 3.6 22 135-156 20-41 (131)
434 PRK00106 hypothetical protein; 45.5 3.5E+02 0.0076 27.6 14.1 94 176-269 59-153 (535)
435 PF06428 Sec2p: GDP/GTP exchan 45.4 34 0.00073 27.1 3.9 6 100-105 23-28 (100)
436 PF13935 Ead_Ea22: Ead/Ea22-li 45.1 1.3E+02 0.0028 24.8 7.6 17 96-112 71-87 (139)
437 PF08647 BRE1: BRE1 E3 ubiquit 44.6 1.5E+02 0.0032 22.9 12.4 57 192-248 24-80 (96)
438 PRK00373 V-type ATP synthase s 44.5 56 0.0012 28.7 5.6 50 134-185 144-193 (204)
439 PF06810 Phage_GP20: Phage min 44.2 2E+02 0.0042 24.3 9.6 13 218-230 56-68 (155)
440 cd00584 Prefoldin_alpha Prefol 43.8 1.6E+02 0.0036 23.4 12.1 8 147-154 13-20 (129)
441 KOG4572|consensus 43.7 4.7E+02 0.01 28.6 17.3 36 121-156 997-1032(1424)
442 COG0172 SerS Seryl-tRNA synthe 43.5 2E+02 0.0044 28.5 9.8 74 121-201 31-105 (429)
443 PF04871 Uso1_p115_C: Uso1 / p 43.5 1.9E+02 0.0041 23.9 14.5 24 238-261 81-104 (136)
444 PF11544 Spc42p: Spindle pole 43.2 1.4E+02 0.0031 22.5 6.8 38 222-263 7-44 (76)
445 PF14257 DUF4349: Domain of un 43.2 1.3E+02 0.0027 27.2 7.9 63 81-161 128-190 (262)
446 PRK10636 putative ABC transpor 43.1 1.4E+02 0.0031 30.7 9.1 14 144-157 567-580 (638)
447 PF00170 bZIP_1: bZIP transcri 43.1 1.2E+02 0.0025 21.4 7.5 50 95-150 15-64 (64)
448 PF03961 DUF342: Protein of un 43.0 2.4E+02 0.0051 27.7 10.3 15 169-183 332-346 (451)
449 PLN02678 seryl-tRNA synthetase 42.8 2.1E+02 0.0046 28.5 9.9 71 78-151 33-103 (448)
450 PF10392 COG5: Golgi transport 42.7 1.8E+02 0.004 23.6 11.0 47 217-263 69-115 (132)
451 PF03148 Tektin: Tektin family 42.7 3.2E+02 0.007 26.4 19.0 128 137-264 222-368 (384)
452 PF04977 DivIC: Septum formati 42.4 51 0.0011 23.7 4.3 28 132-159 23-50 (80)
453 PF09486 HrpB7: Bacterial type 42.3 2.2E+02 0.0048 24.4 19.2 25 88-112 4-28 (158)
454 PF07544 Med9: RNA polymerase 42.3 87 0.0019 23.6 5.6 22 135-156 23-44 (83)
455 KOG1236|consensus 42.3 8.6 0.00019 38.4 0.1 23 7-29 135-158 (565)
456 PRK09841 cryptic autophosphory 42.1 4.3E+02 0.0094 27.7 17.9 7 223-229 373-379 (726)
457 PF14992 TMCO5: TMCO5 family 41.9 3E+02 0.0065 25.8 16.7 41 89-135 8-48 (280)
458 TIGR03545 conserved hypothetic 41.9 2.9E+02 0.0062 28.4 10.9 86 81-185 171-258 (555)
459 PF04949 Transcrip_act: Transc 41.7 2.2E+02 0.0048 24.3 15.4 13 96-108 38-50 (159)
460 PRK11415 hypothetical protein; 41.6 1.3E+02 0.0028 22.3 6.3 54 155-208 8-62 (74)
461 PF10018 Med4: Vitamin-D-recep 41.6 2.3E+02 0.005 24.4 9.5 60 208-268 4-63 (188)
462 PRK05431 seryl-tRNA synthetase 40.2 1.5E+02 0.0032 29.1 8.3 71 120-190 29-99 (425)
463 PF04912 Dynamitin: Dynamitin 40.1 3.5E+02 0.0075 26.0 17.9 140 86-257 247-387 (388)
464 PF06216 RTBV_P46: Rice tungro 40.1 1.8E+02 0.0039 27.1 8.2 69 66-154 45-113 (389)
465 PF10779 XhlA: Haemolysin XhlA 39.3 1.5E+02 0.0032 21.5 8.8 61 208-268 1-61 (71)
466 PF07200 Mod_r: Modifier of ru 39.2 2.1E+02 0.0046 23.3 13.2 122 65-200 8-132 (150)
467 PF14992 TMCO5: TMCO5 family 39.2 3.3E+02 0.0072 25.5 15.1 137 124-267 9-163 (280)
468 TIGR00414 serS seryl-tRNA synt 38.9 2.9E+02 0.0063 27.0 10.1 73 178-250 30-106 (418)
469 PF05335 DUF745: Protein of un 38.5 2.8E+02 0.006 24.4 14.5 97 173-269 69-165 (188)
470 PF14282 FlxA: FlxA-like prote 38.1 1.8E+02 0.0039 22.9 7.1 55 163-217 18-76 (106)
471 KOG3647|consensus 38.0 3.5E+02 0.0076 25.5 13.5 105 138-245 110-214 (338)
472 PF04880 NUDE_C: NUDE protein, 37.9 62 0.0013 28.0 4.7 46 201-250 2-47 (166)
473 COG5570 Uncharacterized small 37.6 1E+02 0.0022 21.7 4.8 54 175-228 2-55 (57)
474 PF01442 Apolipoprotein: Apoli 37.6 2.3E+02 0.0049 23.2 20.1 159 89-259 2-173 (202)
475 PF13874 Nup54: Nucleoporin co 37.6 2.3E+02 0.005 23.3 8.6 95 165-259 31-125 (141)
476 PF13094 CENP-Q: CENP-Q, a CEN 37.5 2.4E+02 0.0052 23.5 9.0 63 173-235 22-84 (160)
477 PF05600 DUF773: Protein of un 37.5 4.5E+02 0.0098 26.6 13.0 151 45-211 50-203 (507)
478 PRK15396 murein lipoprotein; P 37.5 1.8E+02 0.0039 22.0 7.6 52 207-258 26-77 (78)
479 COG1730 GIM5 Predicted prefold 37.4 2.5E+02 0.0055 23.7 13.1 98 127-238 7-140 (145)
480 KOG4326|consensus 37.3 31 0.00067 25.9 2.3 28 9-36 13-60 (81)
481 PF01813 ATP-synt_D: ATP synth 37.2 90 0.002 27.1 5.7 59 126-186 127-185 (196)
482 PRK02195 V-type ATP synthase s 36.7 1.3E+02 0.0028 26.5 6.7 59 126-186 126-184 (201)
483 PRK11020 hypothetical protein; 36.6 1.5E+02 0.0033 24.1 6.3 46 138-183 3-50 (118)
484 PF05384 DegS: Sensor protein 36.5 2.7E+02 0.0059 23.8 18.5 132 119-267 6-138 (159)
485 PF10211 Ax_dynein_light: Axon 36.3 2.9E+02 0.0063 24.0 14.4 103 142-246 86-189 (189)
486 TIGR03017 EpsF chain length de 36.1 4E+02 0.0087 25.6 23.1 180 81-267 167-368 (444)
487 PF11471 Sugarporin_N: Maltopo 36.0 89 0.0019 22.4 4.5 30 218-247 30-59 (60)
488 PF06698 DUF1192: Protein of u 35.8 62 0.0013 23.2 3.6 27 166-192 23-49 (59)
489 KOG2391|consensus 35.7 4.2E+02 0.0091 25.7 14.8 139 95-262 221-359 (365)
490 PF00170 bZIP_1: bZIP transcri 35.6 1.6E+02 0.0034 20.7 8.2 62 88-156 2-63 (64)
491 PRK10869 recombination and rep 35.5 4.9E+02 0.011 26.4 18.0 143 101-257 243-386 (553)
492 PF12004 DUF3498: Domain of un 35.3 12 0.00027 37.5 0.0 128 82-235 366-494 (495)
493 COG3352 FlaC Putative archaeal 35.3 2.9E+02 0.0062 23.7 9.6 93 106-204 44-141 (157)
494 COG4477 EzrA Negative regulato 35.1 5.2E+02 0.011 26.6 23.2 191 80-270 99-338 (570)
495 COG5509 Uncharacterized small 34.7 61 0.0013 23.5 3.4 23 134-156 26-48 (65)
496 KOG4438|consensus 34.6 4.8E+02 0.01 26.0 18.9 153 93-268 139-292 (446)
497 PF07851 TMPIT: TMPIT-like pro 34.5 4.2E+02 0.0092 25.4 10.4 92 175-266 1-93 (330)
498 PRK15396 murein lipoprotein; P 34.5 2E+02 0.0044 21.7 6.5 46 172-217 26-71 (78)
499 PF12072 DUF3552: Domain of un 34.4 3.1E+02 0.0068 23.9 14.0 94 176-269 40-134 (201)
500 PF06637 PV-1: PV-1 protein (P 34.3 4.7E+02 0.01 25.8 14.1 100 136-251 288-387 (442)
No 1
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=99.27 E-value=8e-13 Score=105.00 Aligned_cols=36 Identities=58% Similarity=0.781 Sum_probs=31.7
Q ss_pred CcccccccccccchhhhhHHHHHH----HHHhhHHHhhHH
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDTLLASQD 36 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~~~~~~~ 36 (270)
|+|||||++||||+|+|||||||| ++.++.+..+.+
T Consensus 65 ~~y~kas~~FhQWrD~R~~tVyGLnF~Sk~ea~~F~~~f~ 104 (111)
T cd01206 65 MTFTKTSQKFGQWADSRANTVYGLGFSSEQQLTKFAEKFQ 104 (111)
T ss_pred cceeecccccccccccccceeeecccCCHHHHHHHHHHHH
Confidence 899999999999999999999999 888886655543
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.64 E-value=2.2e-05 Score=83.78 Aligned_cols=19 Identities=16% Similarity=0.489 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhhHHHHHHh
Q psy5601 169 LRKELTSVRSKNETLDSEL 187 (270)
Q Consensus 169 l~~e~~~L~~~l~~lE~~l 187 (270)
+..++..+...+..++.++
T Consensus 803 l~~~~~~l~~~~~~l~~~~ 821 (1164)
T TIGR02169 803 LEEEVSRIEARLREIEQKL 821 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 3
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.55 E-value=5.9e-05 Score=75.25 Aligned_cols=190 Identities=22% Similarity=0.285 Sum_probs=123.3
Q ss_pred hHHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHH
Q psy5601 62 WEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSE 141 (270)
Q Consensus 62 ~E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~e 141 (270)
+..+...|...|..|..-.......|..++.+|...+.++..|.....++.. ....+..++..|.....++...
T Consensus 148 ~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~------~~e~l~~E~~~L~~q~~e~~~r 221 (546)
T PF07888_consen 148 CQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTE------SSEELKEERESLKEQLAEARQR 221 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777778888888888888888888888777765 4555566677777777777777
Q ss_pred HHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHH
Q psy5601 142 LKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAA 221 (270)
Q Consensus 142 L~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~ 221 (270)
|..++.+|..|..+..+.+...... ..+...++..+..+. ..|.....++.............+..+...
T Consensus 222 i~~LEedi~~l~qk~~E~e~~~~~l-------k~~~~elEq~~~eLk---~rLk~~~~~~~~~~~~~~~~~~e~e~Lkeq 291 (546)
T PF07888_consen 222 IRELEEDIKTLTQKEKEQEKELDKL-------KELKAELEQLEAELK---QRLKETVVQLKQEETQAQQLQQENEALKEQ 291 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 7777777777766664444322222 222222222222211 222222222222222334455556667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 222 ISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 222 i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
++.++..+..+++...-+..||..+...||.-+.+|+..|-+.+.|
T Consensus 292 Lr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql 337 (546)
T PF07888_consen 292 LRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQL 337 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 8888888888888888888899999999999999888888665543
No 4
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.48 E-value=0.00033 Score=63.19 Aligned_cols=66 Identities=9% Similarity=0.179 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 202 HAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 202 e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
+....+...++.++..|..++...+.+.+.+......+...+..|.+.+..-...+..+..+|-..
T Consensus 165 ~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 165 EKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555666666666666666666666666666666666666666443
No 5
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.46 E-value=0.00014 Score=79.07 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI 264 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l 264 (270)
++..+..+...+..++.....+...+..+...+...-..|..+...+
T Consensus 854 ~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~ 900 (1163)
T COG1196 854 LEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444443333
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.35 E-value=0.00036 Score=75.84 Aligned_cols=7 Identities=14% Similarity=-0.197 Sum_probs=4.1
Q ss_pred hHHHHHH
Q psy5601 18 ANTVSLV 24 (270)
Q Consensus 18 an~~~~~ 24 (270)
++-+||+
T Consensus 588 ~~g~~~~ 594 (1163)
T COG1196 588 APGFLGL 594 (1163)
T ss_pred ccchhHH
Confidence 5556665
No 7
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.34 E-value=0.00023 Score=64.26 Aligned_cols=122 Identities=19% Similarity=0.275 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhH
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQ 213 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~ 213 (270)
..++....|...+..+.+...++..++. .+..|..++..+...|..+|..-.........+...+..|..++..++.
T Consensus 114 k~~E~~rkl~~~E~~Le~aEeR~e~~E~---ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~ 190 (237)
T PF00261_consen 114 KYEEVERKLKVLEQELERAEERAEAAES---KIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAEN 190 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhch---hHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333332 3444444555555555555544444444444444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5601 214 ENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELA 258 (270)
Q Consensus 214 r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~ 258 (270)
|...++..|..|+..+..+...+...+.....+...+|.-+.+|+
T Consensus 191 Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~ 235 (237)
T PF00261_consen 191 RAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELN 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555555555555555555555555554443
No 8
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.34 E-value=0.0022 Score=59.43 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=41.8
Q ss_pred HHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5601 183 LDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLD----TLLASQDAQRRIIDTLNHQLAGRVAELA 258 (270)
Q Consensus 183 lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Le----e~~~~~~~~~~El~~l~e~ld~ki~eL~ 258 (270)
....+.....++..++..+..+..++..+..++..|+.+|.+++..+. ........++.++..+.......+.++.
T Consensus 207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~ 286 (312)
T PF00038_consen 207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ 286 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 333444444555555555666666666666666666666665544333 2444455555555555555555555444
Q ss_pred HH
Q psy5601 259 TI 260 (270)
Q Consensus 259 el 260 (270)
+|
T Consensus 287 ~L 288 (312)
T PF00038_consen 287 EL 288 (312)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 9
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.32 E-value=0.00016 Score=60.74 Aligned_cols=132 Identities=20% Similarity=0.295 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHH
Q psy5601 92 KQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRK 171 (270)
Q Consensus 92 ~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~ 171 (270)
.+.....+....+...+..++. .....+.++.+|...+..++.+|..++..+..+...+.+.+...+....|..
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~------~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~r 80 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQ------ENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNR 80 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHh
Confidence 3444444555555555555554 4445556666777777777777777777777777777555544333445555
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5601 172 ELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQL 229 (270)
Q Consensus 172 e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~L 229 (270)
++.-|.++|+..+..+......+.+.....+.+..++..++.+....+.++..+...+
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5555555555555555554444444433343344444444444444444444444333
No 10
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.19 E-value=0.0034 Score=55.01 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH
Q psy5601 145 RDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISL 224 (270)
Q Consensus 145 ~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~ 224 (270)
.++|++.|+.-+..|+. +...|..++-.+..+..-|...+..++.+-..+..+.+-+..+...+...+..|..+|-.
T Consensus 65 l~eEledLk~~~~~lEE---~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~ 141 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEE---ENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE 141 (193)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 57888888887777776 445566666667777777777777777776666666777777777777777777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 225 VQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 225 LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
.+.-+-....-..+-..-+..|...++..-.-..++|-++++|
T Consensus 142 ~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~L 184 (193)
T PF14662_consen 142 FESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRL 184 (193)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444444333333343333333333334445555554
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=98.16 E-value=0.0018 Score=68.09 Aligned_cols=6 Identities=50% Similarity=0.579 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy5601 87 VEEWKK 92 (270)
Q Consensus 87 v~~wk~ 92 (270)
+..|+.
T Consensus 491 l~~~~~ 496 (880)
T PRK02224 491 VEEVEE 496 (880)
T ss_pred HHHHHH
Confidence 333333
No 12
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.12 E-value=0.00076 Score=56.63 Aligned_cols=96 Identities=21% Similarity=0.282 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHH
Q psy5601 94 LQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKEL 173 (270)
Q Consensus 94 L~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~ 173 (270)
+..++-+.+....++..+++ .++.++..+......|..|...+..++.+++.+..++......-.........+
T Consensus 2 m~~lk~E~d~a~~r~e~~e~------~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~ 75 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEA------KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA 75 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Confidence 34566666666677766665 555555555555555555555555555555555555544444322223333333
Q ss_pred HHHHHhhHHHHHHhhhhHHHHH
Q psy5601 174 TSVRSKNETLDSELKCRDEEVK 195 (270)
Q Consensus 174 ~~L~~~l~~lE~~l~~~d~el~ 195 (270)
+.|..+|.-||..+...+..+.
T Consensus 76 E~l~rriq~LEeele~ae~~L~ 97 (143)
T PF12718_consen 76 EQLNRRIQLLEEELEEAEKKLK 97 (143)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333
No 13
>KOG0933|consensus
Probab=98.09 E-value=0.0016 Score=68.49 Aligned_cols=150 Identities=20% Similarity=0.281 Sum_probs=123.5
Q ss_pred hhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHH
Q psy5601 118 SEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKK 196 (270)
Q Consensus 118 ~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~ 196 (270)
...+.+|.++......+|.+...-+..++.++..|.+.+.+-... .+....+..++..+..+++.-...+.....+...
T Consensus 740 ~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~ 819 (1174)
T KOG0933|consen 740 LDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYER 819 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336677777777777777777777788899999998888777766 7888899999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 197 LTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 197 L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
|..+++.+...+.........++..+.+|+.++..+.........++..+...+...-.-+...-..|..+
T Consensus 820 l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~ 890 (1174)
T KOG0933|consen 820 LQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGL 890 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence 99999999999999999888888888888888888888888888777777777766666666555555443
No 14
>KOG0996|consensus
Probab=98.08 E-value=0.005 Score=65.88 Aligned_cols=142 Identities=16% Similarity=0.195 Sum_probs=78.4
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHH
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAV 204 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l 204 (270)
.++..+..-++.....+..++.||..|.......+.. +..-..+..+-..++.++..++.++......++..+.++...
T Consensus 426 ~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~va 505 (1293)
T KOG0996|consen 426 RKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVA 505 (1293)
T ss_pred hhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444445555555555555544444433 333445555566666666666666666666666666666666
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 205 EDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 205 ~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
..++..+..+...+-.++.+++..|..+.....+-..++..+...+..+..++..+.+.|.++
T Consensus 506 esel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~ 568 (1293)
T KOG0996|consen 506 ESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKL 568 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHH
Confidence 666666666666655556666666555555555555555555555555555555554444443
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.06 E-value=0.0022 Score=70.65 Aligned_cols=116 Identities=11% Similarity=0.150 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhHHhhhh-h-----hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHH-------
Q psy5601 145 RDEEVKKLTNAKHAVEDK-C-----KAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLL------- 211 (270)
Q Consensus 145 ~e~Eie~L~~qi~~LE~~-~-----~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~------- 211 (270)
+..++..++.+|..|+.. . ..+.++..++..+..+++.+...+.....+...+..++..|+.++..+
T Consensus 797 ~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl 876 (1311)
T TIGR00606 797 FQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQI 876 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777665 1 112334444444444444443333322333333222222221111111
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5601 212 ---SQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATI 260 (270)
Q Consensus 212 ---~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el 260 (270)
-.....++.++..+...++.+......+..++..+...++....++..+
T Consensus 877 ~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1311)
T TIGR00606 877 GTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 1122224555555555555555555555555555544444444444443
No 16
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.04 E-value=0.0035 Score=56.87 Aligned_cols=119 Identities=17% Similarity=0.264 Sum_probs=58.2
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhHHhhhh------hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHH
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKHAVEDK------CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED 206 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~~------~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~ 206 (270)
..++.++.++...+.+|..++.++...+.. ..+...|..+++.+.+++..|+..+.....++..+..++..+..
T Consensus 52 ~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 52 IELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555544 33344455555555555555555555555555555544544444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5601 207 KCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRV 254 (270)
Q Consensus 207 ~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki 254 (270)
.+...+....+++.. ++..+....+.......+...|...++..+
T Consensus 132 ~~~~~e~~~~e~~~~---~e~e~~~i~e~~~~~~~~~~~L~~~l~~el 176 (239)
T COG1579 132 RLERLEKNLAEAEAR---LEEEVAEIREEGQELSSKREELKEKLDPEL 176 (239)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 444444444443322 223333344444444445555555555443
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.02 E-value=0.0053 Score=61.15 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5601 221 AISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATI 260 (270)
Q Consensus 221 ~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el 260 (270)
++..++.+++.++........++..+.+.++....++.++
T Consensus 359 ~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 359 KAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333344444444444444333333
No 18
>KOG0161|consensus
Probab=98.01 E-value=0.0035 Score=70.68 Aligned_cols=134 Identities=19% Similarity=0.284 Sum_probs=69.2
Q ss_pred HHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601 125 RKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 200 (270)
Q Consensus 125 e~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e 200 (270)
+++..++..-...++.++++++..+++=+....+++.. .++...+.+.+..+....+.+...+.+++.++..+...
T Consensus 1005 eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k 1084 (1930)
T KOG0161|consen 1005 EEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSK 1084 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555554444444333333333311 33334455555556666667777777777777777777
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5601 201 KHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELA 258 (270)
Q Consensus 201 ~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~ 258 (270)
+++....+..+...+.++..+|.+|...|+.-+.....++.....|...++....+|.
T Consensus 1085 ~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1085 LEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555555555555555555555555555554444444444444444444333333
No 19
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.97 E-value=0.0037 Score=64.74 Aligned_cols=191 Identities=18% Similarity=0.275 Sum_probs=107.8
Q ss_pred HHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHH
Q psy5601 65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKC 144 (270)
Q Consensus 65 el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~ 144 (270)
+|+..|.....|..-+.-.+.+-...+.+|..++.+|+.|+.++..+..+.. .=+..|..||..|.+
T Consensus 433 eLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq-------------~DKq~l~~LEkrL~e 499 (697)
T PF09726_consen 433 ELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQ-------------QDKQSLQQLEKRLAE 499 (697)
T ss_pred HHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Confidence 4445555555566666556666678888899999999999999988875332 222344444444443
Q ss_pred HHHHHHHHHHhhHHhhhh-------------------hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601 145 RDEEVKKLTNAKHAVEDK-------------------CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 205 (270)
Q Consensus 145 ~e~Eie~L~~qi~~LE~~-------------------~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~ 205 (270)
-..--..|++++.+.... ..-...++.+...|+.++..|..+++.+++.+..|..++.++.
T Consensus 500 E~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 500 ERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222111100 0111125556666666666666666666666666665543322
Q ss_pred -------HHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy5601 206 -------DKCKLLSQENAELQAAISLVQAQLD-------TLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTAL 268 (270)
Q Consensus 206 -------~~~e~~~~r~~~lE~~i~~LE~~Le-------e~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~~ 268 (270)
.+++.+-.-++.+..+..-||.-|. ++=..+...+.++.-+...+-.+-.+|.+|...|+.++
T Consensus 580 ~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 580 KYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344344444444444444444432 34455666667777777888888888888888777664
No 20
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.97 E-value=0.004 Score=62.04 Aligned_cols=27 Identities=4% Similarity=0.175 Sum_probs=10.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 82 ESTANVEEWKKQLQAYKEENQKLKTKY 108 (270)
Q Consensus 82 Es~a~v~~wk~qL~~l~een~rL~~~i 108 (270)
+....+.....++..+......+...+
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i 204 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNI 204 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333344444444444444444333333
No 21
>KOG0250|consensus
Probab=97.96 E-value=0.0039 Score=66.26 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-----------hhhhHHHHHHHHHHHHhhHHHHHHh-
Q psy5601 120 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-----------CKAAVELRKELTSVRSKNETLDSEL- 187 (270)
Q Consensus 120 ~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-----------~~eipel~~e~~~L~~~l~~lE~~l- 187 (270)
.+..++...++..+.+.++.....+++.||+.+++.+..+... |+.+..++..++.++..|..++...
T Consensus 310 k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~ 389 (1074)
T KOG0250|consen 310 KIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN 389 (1074)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555566666666666777777766666544432 4444445555555544444444444
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5601 188 KCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRV 254 (270)
Q Consensus 188 ~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki 254 (270)
.....++.+....++.|..+++.++.-+..|......+...+..-+.+..+.+.++..+.....-..
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444444444444444444444444444433333333
No 22
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.94 E-value=0.0031 Score=57.23 Aligned_cols=117 Identities=20% Similarity=0.317 Sum_probs=64.3
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhh--hhHHHHHHHHHhhHHHHHHHHH
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELK--CRDEEVKKLTNAKHAVEDKCKL 210 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~--~~d~el~~L~~e~e~l~~~~e~ 210 (270)
+..+.+...+.+++.+++.|+.++.. +...+..+++++.+++..+. ....+++.|..++..+.+++..
T Consensus 38 ~e~e~~~~~~~~~~~e~e~le~qv~~----------~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 38 AELEALNKALEALEIELEDLENQVSQ----------LESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555533 33344445555555554443 2334556666666666666666
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5601 211 LSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELAT 259 (270)
Q Consensus 211 ~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~e 259 (270)
+...+..+..++..++..+..++.+...++..+......++..+..+..
T Consensus 108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 108 LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666655555554
No 23
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.92 E-value=0.0061 Score=63.72 Aligned_cols=201 Identities=16% Similarity=0.200 Sum_probs=124.8
Q ss_pred HHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhccc-hhHHHHHHHHHhhhhhchH
Q psy5601 65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKY-------IELEATKGV-SEAAVELRKELTSVRSKNE 136 (270)
Q Consensus 65 el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i-------~Ele~~~~~-~~~~~ele~e~~~l~~~~e 136 (270)
|+.++.....-+.....+....|...+.+|.+....++.|..-+ .+...+++. ...+..+..++.-+..+|.
T Consensus 302 E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~ 381 (775)
T PF10174_consen 302 ELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIE 381 (775)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544444444455666667777777766655555544444 444443332 2256677788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHH------------HhhHHHHHHhhhhHHHHHHHHHh-hH
Q psy5601 137 TLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVR------------SKNETLDSELKCRDEEVKKLTNA-KH 202 (270)
Q Consensus 137 ele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~------------~~l~~lE~~l~~~d~el~~L~~e-~e 202 (270)
.+...++.++.+|..|..+|+.|+.. ...-..+....+.|. ..|+..-.........|..+... ..
T Consensus 382 ~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~ 461 (775)
T PF10174_consen 382 DLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEK 461 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999988888866 333333333334444 33333333333333333333222 11
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601 203 AVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREIN 265 (270)
Q Consensus 203 ~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~ 265 (270)
+..+.++.....+..+...|..|+..|.+..-....++.+...|.....++-.+|..+|-.+.
T Consensus 462 e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lE 524 (775)
T PF10174_consen 462 ERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELE 524 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHH
Confidence 345567777777777888888888888888877777777777777777777777776666654
No 24
>KOG0996|consensus
Probab=97.91 E-value=0.0056 Score=65.51 Aligned_cols=194 Identities=13% Similarity=0.186 Sum_probs=90.1
Q ss_pred chhHHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHH
Q psy5601 60 KKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLD 139 (270)
Q Consensus 60 ~~~E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele 139 (270)
..|=.++.++-..+.+....|-.....+++.+++++........++........ .+..+..++.+|.......+
T Consensus 387 ~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~------~i~~~~~ei~~L~~~~~~~~ 460 (1293)
T KOG0996|consen 387 ESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARI------EIQKCQTEIEQLEELLEKEE 460 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHh------HHHHHHHHHHHHHHHHHHHH
Confidence 345556666666777777777777777777777777777666666665554443 33333333333333333222
Q ss_pred HHHHH----HHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHH
Q psy5601 140 SELKC----RDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQEN 215 (270)
Q Consensus 140 ~eL~~----~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~ 215 (270)
..+.. ++.+.+.++..+..++. +...+..++-.++.+++-++++++.+-.--+.....++++...+......+
T Consensus 461 ~~l~e~~~~l~~~t~~~~~e~~~~ek---el~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~ 537 (1293)
T KOG0996|consen 461 RELDEILDSLKQETEGIREEIEKLEK---ELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESL 537 (1293)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 22222222222222222 111122233333333333333333333333333334555666666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy5601 216 AELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHR 262 (270)
Q Consensus 216 ~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~ 262 (270)
.+..+.+..++..|...+....+...++..++.....+...++.+|+
T Consensus 538 ~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rq 584 (1293)
T KOG0996|consen 538 KEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQ 584 (1293)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55444555555555444444444444444444444433333333333
No 25
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.87 E-value=0.01 Score=65.57 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIID 244 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~ 244 (270)
+...+..+...+..+......+...|.
T Consensus 996 l~~~i~~l~kel~~~~~~kr~l~dnL~ 1022 (1311)
T TIGR00606 996 INEDMRLMRQDIDTQKIQERWLQDNLT 1022 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.85 E-value=0.0098 Score=59.71 Aligned_cols=63 Identities=22% Similarity=0.462 Sum_probs=32.9
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHhhHHHHHHhh
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSKNETLDSELK 188 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~l~~lE~~l~ 188 (270)
.+..++..+++.|+++|.....+...|..+..++... ..+...|..+.+....+|..||..+.
T Consensus 164 ~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~ 230 (546)
T PF07888_consen 164 EEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIK 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555567777777777666777776666655543 22223333334444444444443333
No 27
>KOG0161|consensus
Probab=97.85 E-value=0.01 Score=67.06 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 85 ANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 85 a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
....+|..+..+....+..|...|..++. .+..+-.++..+-..+.++-.++...++.+..|.+....|++
T Consensus 950 ~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e------~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~ 1020 (1930)
T KOG0161|consen 950 LTLQKLELEKNAAENKLKNLEEEINSLDE------NISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQ 1020 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443333 222222333333344444444444444444444444444443
No 28
>KOG0250|consensus
Probab=97.84 E-value=0.009 Score=63.61 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5601 92 KQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 92 ~qL~~l~een~rL~~~i~Ele 112 (270)
.++..+.+++-..+.++..+.
T Consensus 281 ~ql~~~~~~i~~~qek~~~l~ 301 (1074)
T KOG0250|consen 281 RQLNNQEEEIKKKQEKVDTLQ 301 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 29
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.84 E-value=0.016 Score=60.74 Aligned_cols=204 Identities=17% Similarity=0.228 Sum_probs=94.3
Q ss_pred HHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHhhhhhchHHHHHHHH
Q psy5601 65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGV-SEAAVELRKELTSVRSKNETLDSELK 143 (270)
Q Consensus 65 el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~-~~~~~ele~e~~~l~~~~eele~eL~ 143 (270)
++..-+..-..++.-+-.+.-.+..-+.+|.+++.....+...-.+...|-.. -..+...+...+-|-+.|+.|...|.
T Consensus 274 ~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle 353 (775)
T PF10174_consen 274 QLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLE 353 (775)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444444444444444455555555555555554444433333332211000 00334444555666666666666666
Q ss_pred HHHHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHhhH-------HHHHHhhhhHHHHHHHHHhhH---------H
Q psy5601 144 CRDEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSKNE-------TLDSELKCRDEEVKKLTNAKH---------A 203 (270)
Q Consensus 144 ~~e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~l~-------~lE~~l~~~d~el~~L~~e~e---------~ 203 (270)
.+..-+.....++..+... .++|..+.+.++....+|. .|+..+.+++..+..++..+. .
T Consensus 354 ~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~ 433 (775)
T PF10174_consen 354 EKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDE 433 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHH
Confidence 6666666666666555544 3444444444444333333 333334444444333332221 1
Q ss_pred HHHHHHHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy5601 204 VEDKCKLLSQENAELQAAIS--------LVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTAL 268 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~--------~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~~ 268 (270)
+...++.+.....-+-..+. ....+++..+.....++..+..|...+..+-..|..++...++|+
T Consensus 434 ~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~ 506 (775)
T PF10174_consen 434 ALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLA 506 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHh
Confidence 11222222222211111111 223445555555556666666666666666666666666666654
No 30
>KOG0995|consensus
Probab=97.81 E-value=0.011 Score=59.35 Aligned_cols=123 Identities=20% Similarity=0.298 Sum_probs=70.1
Q ss_pred hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy5601 68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDE 147 (270)
Q Consensus 68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~ 147 (270)
.|+..|..|-..+. .+++...-++.+++..++|+.-+.-..+ -..+|......+...|+.+..++..+++
T Consensus 239 ~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~------y~~~~~~k~~~~~~~l~~l~~Eie~kEe 308 (581)
T KOG0995|consen 239 DLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQA------YVSQMKSKKQHMEKKLEMLKSEIEEKEE 308 (581)
T ss_pred HHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444 2333333334444444444444443333 4444445555555666677777777777
Q ss_pred HHHHHHHhhHHhhhh-------hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601 148 EVKKLTNAKHAVEDK-------CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 200 (270)
Q Consensus 148 Eie~L~~qi~~LE~~-------~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e 200 (270)
|++.|+.++.+|... ...+.....+...|...|..+...++....++-++..+
T Consensus 309 E~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~ 368 (581)
T KOG0995|consen 309 EIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLE 368 (581)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 777777777766655 44555566666667777776666666666666555553
No 31
>PRK09039 hypothetical protein; Validated
Probab=97.77 E-value=0.01 Score=56.63 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=44.7
Q ss_pred HhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHH
Q psy5601 128 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK 207 (270)
Q Consensus 128 ~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~ 207 (270)
...+...+.++..++...+.....|........ .....+..++..+..+|......+......+..|+.+++.|..+
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~---~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLAELA---GAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 355556666666666665555555555443211 11223344444444444444444444444444444444444444
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q psy5601 208 CKLLSQENAELQAAISLVQAQLD 230 (270)
Q Consensus 208 ~e~~~~r~~~lE~~i~~LE~~Le 230 (270)
+..++..+.+++.+..+.+.+++
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~ 175 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIA 175 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 32
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.73 E-value=0.02 Score=62.77 Aligned_cols=62 Identities=13% Similarity=0.256 Sum_probs=35.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601 204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREIN 265 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~ 265 (270)
+......+..+...++.++..++.++..+.........++..-...++..+..+.+.+..|.
T Consensus 814 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~ 875 (1201)
T PF12128_consen 814 LREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLR 875 (1201)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555666666666666666655555555555555555555555555555443
No 33
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.71 E-value=0.025 Score=53.04 Aligned_cols=134 Identities=21% Similarity=0.251 Sum_probs=106.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhhhhhh--------hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKA--------AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 205 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~~~e--------ipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~ 205 (270)
.++.|...+..+++|...||.+...|...... +..--.+....+..|..|...|..+-.+....+.+|..|.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll 240 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL 240 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888877777644111 2223345566666677777777777777777777788888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 206 DKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
.++..++.+.+.+-..+..|...|...+..+..+..++..|.+.-..-..-|++.+.+|.++
T Consensus 241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888999999988899999999999999999999999999999999999999999988765
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=97.70 E-value=0.03 Score=58.81 Aligned_cols=70 Identities=29% Similarity=0.387 Sum_probs=29.6
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHH
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVK 195 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~ 195 (270)
....++...+..+..++...+.++..+..++..++..-.....+..++..+...+..++..+.....++.
T Consensus 200 ~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~ 269 (880)
T PRK03918 200 KELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIE 269 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443334444444444444444444433333333333
No 35
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.70 E-value=0.0074 Score=50.62 Aligned_cols=124 Identities=18% Similarity=0.178 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q psy5601 120 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN 199 (270)
Q Consensus 120 ~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~ 199 (270)
.+++++.+...+...|..++++|...+.....+..+.+.-.+ .+..|..++..+..++.++ ..++..+..
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~---eie~L~~el~~lt~el~~L-------~~EL~~l~s 80 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKA---EIETLEEELEELTSELNQL-------ELELDTLRS 80 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 344444555566666666666666666555554444422222 2333444444444444444 445555556
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5601 200 AKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGR 253 (270)
Q Consensus 200 e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~k 253 (270)
+.+.+...++....++.+|+..+.++..-|..+......+..+...-.+.|-.-
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~q 134 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQ 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666665554444444444444333
No 36
>PRK03918 chromosome segregation protein; Provisional
Probab=97.68 E-value=0.026 Score=59.29 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=11.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 207 KCKLLSQENAELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 207 ~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
.+..+..++..+...+..++..+..+.....
T Consensus 667 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~ 697 (880)
T PRK03918 667 EYLELSRELAGLRAELEELEKRREEIKKTLE 697 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 37
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.66 E-value=0.027 Score=49.80 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 169 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE-LQAAISLVQAQLDTLLASQDAQRRIIDTLN 247 (270)
Q Consensus 169 l~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~-lE~~i~~LE~~Lee~~~~~~~~~~El~~l~ 247 (270)
++.++..+...|..|+-....+...+..+..+.+++..+.+.+-...+- ..-++--|+..|..+....+.-...|..+.
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl 170 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVL 170 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433333333 333333444444444444444444444444
Q ss_pred HHHhHHHHHHHHHHHHHHHhh
Q psy5601 248 HQLAGRVAELATIHREINTAL 268 (270)
Q Consensus 248 e~ld~ki~eL~el~~~l~~~~ 268 (270)
..-.---..+..+..+|..+|
T Consensus 171 ~~~nldp~~~~~v~~~l~~~l 191 (201)
T PF13851_consen 171 AAANLDPAALSQVSKKLEDVL 191 (201)
T ss_pred HHcCCCHHHHHHHHHHHHHHH
Confidence 443333344444445444443
No 38
>KOG4643|consensus
Probab=97.50 E-value=0.089 Score=55.93 Aligned_cols=206 Identities=19% Similarity=0.262 Sum_probs=123.8
Q ss_pred chhHHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h--ccchhHHHHHHHHHh------
Q psy5601 60 KKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEA--T--KGVSEAAVELRKELT------ 129 (270)
Q Consensus 60 ~~~E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~--~--~~~~~~~~ele~e~~------ 129 (270)
-..+.++++|+..+-+|..-|.|-+.+.-..+.+|+-++.+..+|+..+.+.=. + ......+..+....+
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~y 252 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTY 252 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCcc
Confidence 356678899999988888888888888888888888888888888888765421 1 111122333333221
Q ss_pred --------hhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhh------hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHH
Q psy5601 130 --------SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKC------KAAVELRKELTSVRSKNETLDSELKCRDEEVK 195 (270)
Q Consensus 130 --------~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~------~eipel~~e~~~L~~~l~~lE~~l~~~d~el~ 195 (270)
=+++++++|+.+-+.+.++-+.|+.|+..+.++. ++|-.++.+++.++....-.-..+..+-.+..
T Consensus 253 kerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEns 332 (1195)
T KOG4643|consen 253 KERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENS 332 (1195)
T ss_pred chhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2567788888887777777777777777777762 33333333333333222221112222222222
Q ss_pred HHHHh----------------------------------------------------------hHHHHHHHHHHhHHHHH
Q psy5601 196 KLTNA----------------------------------------------------------KHAVEDKCKLLSQENAE 217 (270)
Q Consensus 196 ~L~~e----------------------------------------------------------~e~l~~~~e~~~~r~~~ 217 (270)
.|+.+ .+.+..++-.++..+..
T Consensus 333 tLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~Kn 412 (1195)
T KOG4643|consen 333 TLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKN 412 (1195)
T ss_pred HHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHh
Confidence 22211 12222233344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREIN 265 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~ 265 (270)
+..+++.|+..+..+.....+++..-+.|...+++...+..+....++
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~ 460 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLS 460 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 666777777777777777777777777777777777777777665554
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.49 E-value=0.084 Score=48.90 Aligned_cols=37 Identities=30% Similarity=0.306 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhH
Q psy5601 121 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKH 157 (270)
Q Consensus 121 ~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~ 157 (270)
+..+..+...++...+...+....++.++..|++.++
T Consensus 77 ~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld 113 (312)
T PF00038_consen 77 IDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLD 113 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3334444444444444444444455555555555554
No 40
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.48 E-value=0.075 Score=54.49 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=29.1
Q ss_pred hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEA 113 (270)
Q Consensus 68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~ 113 (270)
.|+.+++.+.--.++.+..|..++.+..........|...|.++..
T Consensus 19 ~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~ 64 (617)
T PF15070_consen 19 QLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKN 64 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666556666666666666666666666666666666554
No 41
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.41 E-value=0.093 Score=52.73 Aligned_cols=129 Identities=15% Similarity=0.220 Sum_probs=58.7
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHH
Q psy5601 129 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKC 208 (270)
Q Consensus 129 ~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~ 208 (270)
..+...+++.+..|.....|+..|+.-+..|.. ++...+..+..++.........+.++..+++.++.+++.+....
T Consensus 284 ~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~---ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e 360 (522)
T PF05701_consen 284 ASAKKELEEAKKELEKAKEEASSLRASVESLRS---ELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEE 360 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhh
Confidence 334444445555555555555555555544443 33444444444555555555555555555555555544433333
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5601 209 KLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATI 260 (270)
Q Consensus 209 e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el 260 (270)
........++-..+..+..+.+.++......+.++..++...+.-...+.++
T Consensus 361 ~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~ 412 (522)
T PF05701_consen 361 EKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTA 412 (522)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444444444444433333
No 42
>KOG0977|consensus
Probab=97.39 E-value=0.13 Score=51.88 Aligned_cols=157 Identities=18% Similarity=0.245 Sum_probs=72.3
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHH-HHHHHhhhh-------hchHHHHHHHHHHHH
Q psy5601 77 TSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVS-EAAVE-LRKELTSVR-------SKNETLDSELKCRDE 147 (270)
Q Consensus 77 ~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~-~~~~e-le~e~~~l~-------~~~eele~eL~~~e~ 147 (270)
+-=|++.+.....+=-.+--|..+|..|...|..+....+.+ +.++. ++.++..++ .....++.+|..+..
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~ 120 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE 120 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333344444333444444466778888888888887643322 22221 223333333 344455555555555
Q ss_pred HHHHHHHhhHHhhhhh----hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh-------hHHHHHHHHHHhHHHH
Q psy5601 148 EVKKLTNAKHAVEDKC----KAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA-------KHAVEDKCKLLSQENA 216 (270)
Q Consensus 148 Eie~L~~qi~~LE~~~----~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e-------~e~l~~~~e~~~~r~~ 216 (270)
|+..|+.+....+..+ ..+......+..+..++.-+-+++...+.++..|+.+ +..+...++....-..
T Consensus 121 e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~ 200 (546)
T KOG0977|consen 121 ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRV 200 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5555555554443221 1122222333333333333334444444444444443 3333333333333334
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5601 217 ELQAAISLVQAQLDTLL 233 (270)
Q Consensus 217 ~lE~~i~~LE~~Lee~~ 233 (270)
+++.++.+|..+|+-+.
T Consensus 201 d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 201 DLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 45555566555555554
No 43
>PRK09039 hypothetical protein; Validated
Probab=97.37 E-value=0.041 Score=52.44 Aligned_cols=126 Identities=15% Similarity=0.152 Sum_probs=57.2
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHh
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLS 212 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~ 212 (270)
.....++..|..+...+..++.....|+.. ..........+...+..+..++......+.+..-++..|..+|+.+.
T Consensus 74 ~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~---~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr 150 (343)
T PRK09039 74 QGNQDLQDSVANLRASLSAAEAERSRLQAL---LAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALR 150 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 444566666666666666555555555542 11222223344444444444444444444444334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601 213 QENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI 264 (270)
Q Consensus 213 ~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l 264 (270)
..++.++..|...+.+..+.+.....+...|..... .++.+|..++.++
T Consensus 151 ~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~---~~~~~l~~~~~~~ 199 (343)
T PRK09039 151 RQLAALEAALDASEKRDRESQAKIADLGRRLNVALA---QRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHH
Confidence 444444444444444444444444433333332221 2345566666655
No 44
>KOG0995|consensus
Probab=97.35 E-value=0.052 Score=54.55 Aligned_cols=157 Identities=16% Similarity=0.228 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHH
Q psy5601 90 WKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVEL 169 (270)
Q Consensus 90 wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel 169 (270)
.-.+++.++..|..|...|.+.+. .++.++.+++....|...+....+-+..+..-. +..
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek---~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~-----------------~~~ 292 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREK---DPGKEESLREKKARLQDDVNKFQAYVSQMKSKK-----------------QHM 292 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-----------------HHH
Confidence 345777888888888888887664 333455555555544444443333333322222 222
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 170 RKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA---VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTL 246 (270)
Q Consensus 170 ~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~---l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l 246 (270)
...+..+..+|++-|.++..+..+..+|+..++- -..+++.....+..+...|..+..+++.+.+..-+...+....
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~ 372 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDF 372 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 2233344444444444444444444445444332 2345666666777788888888888888888888888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q psy5601 247 NHQLAGRVAELATIHREINT 266 (270)
Q Consensus 247 ~e~ld~ki~eL~el~~~l~~ 266 (270)
.+.+..+..+++.+.+.|.-
T Consensus 373 f~~le~~~~~~~~l~~~i~l 392 (581)
T KOG0995|consen 373 FKELEKKFIDLNSLIRRIKL 392 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88899999999888777643
No 45
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.30 E-value=0.15 Score=47.61 Aligned_cols=96 Identities=19% Similarity=0.300 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 167 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTL 246 (270)
Q Consensus 167 pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l 246 (270)
+.+-..+..|+..++.....+.-. ..+..|..+++.+..+...+-++++.+=..+.....++-.+-...++++.+...+
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~-~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~ 212 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEEN-EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADEL 212 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666555443322 3444455555554444444444444444444444444444444444444444444
Q ss_pred HHHHhHHHHHHHHHHHH
Q psy5601 247 NHQLAGRVAELATIHRE 263 (270)
Q Consensus 247 ~e~ld~ki~eL~el~~~ 263 (270)
++..-........+|..
T Consensus 213 he~~ve~~~~~~e~~ee 229 (294)
T COG1340 213 HEEFVELSKKIDELHEE 229 (294)
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 44444444444444433
No 46
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.24 E-value=0.12 Score=45.34 Aligned_cols=175 Identities=16% Similarity=0.162 Sum_probs=99.7
Q ss_pred HhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy5601 66 LANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCR 145 (270)
Q Consensus 66 l~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~ 145 (270)
+.+|..+|-+|. .+..+.+..+....+-|++|...|..+..+-... ...-..-..|..+++.|+.-+...
T Consensus 10 v~dL~~~n~~L~-------~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~---Qqal~~aK~l~eEledLk~~~~~l 79 (193)
T PF14662_consen 10 VEDLQLNNQKLA-------DENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL---QQALQKAKALEEELEDLKTLAKSL 79 (193)
T ss_pred HHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677776644 4566777777777777777777777665422211 111122234456666677666777
Q ss_pred HHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHH
Q psy5601 146 DEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAA 221 (270)
Q Consensus 146 e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~ 221 (270)
+++...|-++...+|.+ ..++..|.++...|....+-+-++...+-.+...|+.++.....-+-.-+.-..+-..+
T Consensus 80 EE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~ 159 (193)
T PF14662_consen 80 EEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQ 159 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777777666654 44555566666666666666666655555555555555433222222222333334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 222 ISLVQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 222 i~~LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
|..|...|++-..--..++.+...|.+++
T Consensus 160 i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 160 IEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665666665555554
No 47
>KOG0933|consensus
Probab=97.20 E-value=0.16 Score=54.15 Aligned_cols=130 Identities=17% Similarity=0.266 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHH
Q psy5601 118 SEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSKNETLDSELKCRDEE 193 (270)
Q Consensus 118 ~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~l~~lE~~l~~~d~e 193 (270)
..++.++..+...+..++++-...+...+.+.+.|.-.++.++.. ......+..+++.|..++..+++.+.+...+
T Consensus 786 e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~ 865 (1174)
T KOG0933|consen 786 ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKD 865 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 335666666666666666655555555555555555444444432 1122233333333333333333333333333
Q ss_pred HHHHHHhhHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 194 VKKLTNAKHA--------------VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLN 247 (270)
Q Consensus 194 l~~L~~e~e~--------------l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~ 247 (270)
...+..++.+ +...++.+..++...+-.+..|+.++...+........++..+.
T Consensus 866 ~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~ 933 (1174)
T KOG0933|consen 866 VKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLL 933 (1174)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHH
Confidence 3333333222 22333444444444444444455555444444444444444433
No 48
>KOG4674|consensus
Probab=97.18 E-value=0.28 Score=55.44 Aligned_cols=126 Identities=25% Similarity=0.322 Sum_probs=82.5
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHh----hHHhhhh----hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh---
Q psy5601 132 RSKNETLDSELKCRDEEVKKLTNA----KHAVEDK----CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA--- 200 (270)
Q Consensus 132 ~~~~eele~eL~~~e~Eie~L~~q----i~~LE~~----~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e--- 200 (270)
-....-|..+|...-+++..++.+ +..|++. ......+.+.+..+.....+|+..+.++..+|..++..
T Consensus 191 ~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s 270 (1822)
T KOG4674|consen 191 ESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAES 270 (1822)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 334444555555555555555555 5555554 33556678888888888999999999888888887665
Q ss_pred ---------------hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5601 201 ---------------KHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL 257 (270)
Q Consensus 201 ---------------~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL 257 (270)
.+-....++++..+..++...|..++.-|+++..+-.+...-+..+..-++.+...+
T Consensus 271 ~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~ 342 (1822)
T KOG4674|consen 271 SEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKL 342 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 122444666666666667777777777777777776666666666555555555555
No 49
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.17 E-value=0.11 Score=43.51 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy5601 95 QAYKEENQKLKTKYIELEA 113 (270)
Q Consensus 95 ~~l~een~rL~~~i~Ele~ 113 (270)
-+.+.+.+-|...|.-+++
T Consensus 13 K~~~~e~dsle~~v~~LEr 31 (140)
T PF10473_consen 13 KESESEKDSLEDHVESLER 31 (140)
T ss_pred HHHHHhHhhHHHHHHHHHH
Confidence 3445555555555554443
No 50
>KOG4674|consensus
Probab=97.09 E-value=0.34 Score=54.81 Aligned_cols=62 Identities=23% Similarity=0.245 Sum_probs=44.2
Q ss_pred hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhch
Q psy5601 68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKN 135 (270)
Q Consensus 68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~ 135 (270)
.||.+|..+..-+++....|.+.+..+.-++..+..|...|....+ .+.-|+.+...++.+.
T Consensus 1233 ~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~a------el~~l~~e~~~wK~R~ 1294 (1822)
T KOG4674|consen 1233 VLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVA------ELKKLEEENDRWKQRN 1294 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 5777777777778888888888888888888888888888887775 4444444444333333
No 51
>KOG0964|consensus
Probab=97.09 E-value=0.38 Score=51.29 Aligned_cols=101 Identities=20% Similarity=0.266 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHH-------HHHHHHhhH-HHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHH
Q psy5601 167 VELRKELTSVRSKNETLDSELKCRDEE-------VKKLTNAKH-AVEDKCKLLSQENAE-----LQAAISLVQAQLDTLL 233 (270)
Q Consensus 167 pel~~e~~~L~~~l~~lE~~l~~~d~e-------l~~L~~e~e-~l~~~~e~~~~r~~~-----lE~~i~~LE~~Lee~~ 233 (270)
|+..+++..|+.+|..+--.+...-.+ +..+...+. .|--++..+..++.+ ....+...+.+|....
T Consensus 781 ~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~ 860 (1200)
T KOG0964|consen 781 PEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEE 860 (1200)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHH
Confidence 555555555555555554444432222 222222211 133344444444444 5666777788888888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 234 ASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 234 ~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
.+++....++..+.+..+++...+.++...|.++
T Consensus 861 ~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~ 894 (1200)
T KOG0964|consen 861 KRVEAAILELKTLQDSIDKKKAEIKEIKKELEKA 894 (1200)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999998888664
No 52
>KOG0971|consensus
Probab=97.08 E-value=0.13 Score=54.23 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=9.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE 160 (270)
++.+|+..-..+..+++.+...|.+|.
T Consensus 411 E~~eL~r~kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 411 ELEELRRQKERLSRELDQAESTIADLK 437 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 53
>KOG0999|consensus
Probab=97.06 E-value=0.32 Score=48.99 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh--
Q psy5601 85 ANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-- 162 (270)
Q Consensus 85 a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-- 162 (270)
..|..++.+++.+-.+.++....+..... ---++-+++..|....++|+++.+....|++.++.-...--+.
T Consensus 8 q~ve~lr~eierLT~el~q~t~e~~qaAe------yGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hk 81 (772)
T KOG0999|consen 8 QEVEKLRQEIERLTEELEQTTEEKIQAAE------YGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHK 81 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665555555544433322 2233456677788888888888888777887776655433222
Q ss_pred ----------hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601 163 ----------CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL 232 (270)
Q Consensus 163 ----------~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~ 232 (270)
.+-+.+--..-+..-..|-.|+.++..+..++...+.+.+.+......+..-++..|..-..|..+|.+.
T Consensus 82 k~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~ 161 (772)
T KOG0999|consen 82 KVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEY 161 (772)
T ss_pred HhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHH
Confidence 2223333344455666777777777777777777777777766666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5601 233 LASQDAQRRIIDTLNHQ 249 (270)
Q Consensus 233 ~~~~~~~~~El~~l~e~ 249 (270)
+-+...+-.+-..|.+.
T Consensus 162 KfRE~RllseYSELEEE 178 (772)
T KOG0999|consen 162 KFREARLLSEYSELEEE 178 (772)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55555554444444443
No 54
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.04 E-value=0.17 Score=47.74 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=63.6
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 205 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~ 205 (270)
.....+..-+..+......+..++..|+....+++.- =..++..++.+|..+...+..+...+.+++.++..+.
T Consensus 170 ~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~------D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~ 243 (325)
T PF08317_consen 170 KQLEQLDELLPKLRERKAELEEELENLKQLVEEIESC------DQEELEALRQELAEQKEEIEAKKKELAELQEELEELE 243 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555666666666665544431 1245566666777766666666777777777777777
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy5601 206 DKCKLLSQENAELQAAISLVQAQLDTLL 233 (270)
Q Consensus 206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~ 233 (270)
.+++.+..++..+...|..++..++..+
T Consensus 244 ~~i~~~~~~k~~l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 244 EKIEELEEQKQELLAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777777777777776666443
No 55
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.03 E-value=0.29 Score=45.78 Aligned_cols=32 Identities=9% Similarity=0.177 Sum_probs=12.6
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhH
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKH 157 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~ 157 (270)
+.+..+..+|.+++.........+..|.+.+.
T Consensus 62 ~~rdeineev~elK~kR~ein~kl~eL~~~~~ 93 (294)
T COG1340 62 EERDEINEEVQELKEKRDEINAKLQELRKEYR 93 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444443333333333333333
No 56
>KOG1003|consensus
Probab=96.99 E-value=0.22 Score=43.89 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHH
Q psy5601 88 EEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKC 144 (270)
Q Consensus 88 ~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~ 144 (270)
..|.-.+.+.+..+..+...-.+.+. .++-|+-..-++...|+.++.++..
T Consensus 21 e~aqErl~~a~~KL~Eaeq~~dE~er------~~Kv~enr~~kdEE~~e~~e~qLkE 71 (205)
T KOG1003|consen 21 DRAQERLATALQKLEEAEQAADESER------GMKVIENRAQKLEEKMEAQEAQLKE 71 (205)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHH------HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444444333333333333 4455555556666677777777764
No 57
>KOG0977|consensus
Probab=96.95 E-value=0.13 Score=51.90 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q psy5601 96 AYKEENQKLKTKY 108 (270)
Q Consensus 96 ~l~een~rL~~~i 108 (270)
.++.=|.||...|
T Consensus 43 El~~LNDRLA~YI 55 (546)
T KOG0977|consen 43 ELQELNDRLAVYI 55 (546)
T ss_pred HHHHHHHHHHHHH
Confidence 4444455555555
No 58
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.95 E-value=0.37 Score=45.65 Aligned_cols=170 Identities=20% Similarity=0.262 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cc------------chhHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy5601 83 STANVEEWKKQLQAYKEENQKLKTKYIELEAT---KG------------VSEAAVELRKELTSVRSKNETLDSELKCRDE 147 (270)
Q Consensus 83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele~~---~~------------~~~~~~ele~e~~~l~~~~eele~eL~~~e~ 147 (270)
....-++++.-.+.++.+...|+..+.++.-. .+ =...+.+.++.+..|...+..|...|.+.+.
T Consensus 21 cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 21 CQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445566666666666666666666665511 11 0124678889999999999999999999999
Q ss_pred HHHHHHHhhHHhhhhhhhh---------HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH-
Q psy5601 148 EVKKLTNAKHAVEDKCKAA---------VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE- 217 (270)
Q Consensus 148 Eie~L~~qi~~LE~~~~ei---------pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~- 217 (270)
.|.-||.++......+.++ ..+=.+++.++..+..|+..++..-.+..++..+.+....++..+...+.-
T Consensus 101 D~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 101 DIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred hHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877662222 224556677778888888888877777777777766666666666555443
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601 218 -------------LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAG 252 (270)
Q Consensus 218 -------------lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ 252 (270)
+=..++-|..+|..++.+.+-+..-+...+..++.
T Consensus 181 L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 181 LNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred hCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666666666666566666666666653
No 59
>KOG0980|consensus
Probab=96.88 E-value=0.79 Score=48.46 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=29.2
Q ss_pred hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIE 110 (270)
Q Consensus 68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~E 110 (270)
++...++.+..+..++...+.+.+.++..+..+++.-+...++
T Consensus 341 e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe 383 (980)
T KOG0980|consen 341 EVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQE 383 (980)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4444556666667788888888888888887776665444433
No 60
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.82 E-value=0.66 Score=46.68 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy5601 136 ETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 136 eele~eL~~~e~Eie~L~~qi 156 (270)
..|+..+...+.++..|+.++
T Consensus 214 ~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 214 EEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555544
No 61
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=96.78 E-value=0.045 Score=44.74 Aligned_cols=61 Identities=26% Similarity=0.347 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHH
Q psy5601 146 DEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED 206 (270)
Q Consensus 146 e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~ 206 (270)
..||-+|-...+++......+|.|..++..|..+.+.+=--++.+.+++.+|+..+.++..
T Consensus 50 ~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 50 REEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555555555555555544455555555555555544433
No 62
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=96.77 E-value=0.00026 Score=57.12 Aligned_cols=27 Identities=22% Similarity=0.532 Sum_probs=23.8
Q ss_pred CcccccccccccchhhhhHHHHHH----HHHhh
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLD 29 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~ 29 (270)
|+|+|++++|+||+|+| +|||| +...+
T Consensus 67 l~y~k~~p~Fh~w~~~~--~v~GLnF~Se~eA~ 97 (111)
T cd01207 67 LKYNQATPTFHQWRDAR--QVYGLNFGSKEDAT 97 (111)
T ss_pred ceeeecCCcceeeecCC--eEEeeccCCHHHHH
Confidence 78999999999999997 89999 66544
No 63
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.73 E-value=0.00037 Score=73.62 Aligned_cols=177 Identities=19% Similarity=0.267 Sum_probs=0.0
Q ss_pred hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy5601 68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDE 147 (270)
Q Consensus 68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~ 147 (270)
.+......|...+.+-......|..+|..+..+...++.++..--. ...+++++-+..+...+.++..++.....
T Consensus 268 ~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~-----~~~EelEeaKKkL~~~L~el~e~le~~~~ 342 (859)
T PF01576_consen 268 QLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAE-----QRTEELEEAKKKLERKLQELQEQLEEANA 342 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555544455555555555555555555555533111 01223333344444444444444333333
Q ss_pred HHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5601 148 EVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQA 227 (270)
Q Consensus 148 Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~ 227 (270)
.+..|.+....|. +++..++..++........++...+..|..|.+++..++.+...++.+......+.+.|-.|..
T Consensus 343 ~~~~LeK~k~rL~---~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~ 419 (859)
T PF01576_consen 343 KVSSLEKTKKRLQ---GELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKN 419 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3333322222222 2333333444444444444444445555555555444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601 228 QLDTLLASQDAQRRIIDTLNHQLAG 252 (270)
Q Consensus 228 ~Lee~~~~~~~~~~El~~l~e~ld~ 252 (270)
.++++......+..+.+.|...++.
T Consensus 420 ~lee~~e~~e~lere~k~L~~El~d 444 (859)
T PF01576_consen 420 ELEELQEQLEELERENKQLQDELED 444 (859)
T ss_dssp -------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444444444444443333333333
No 64
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.73 E-value=0.68 Score=46.97 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHH
Q psy5601 142 LKCRDEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLL 211 (270)
Q Consensus 142 L~~~e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~ 211 (270)
....+.++..|.+++..+... ......+..+...+...+..++.........|..|+..-.++..++...
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~ 423 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERY 423 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433332 1224455566666666666666666666666666555533333333333
No 65
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.72 E-value=0.88 Score=47.47 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 220 AAISLVQAQLDTLLASQDAQRRIIDTLNHQ 249 (270)
Q Consensus 220 ~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ 249 (270)
..+.+..++|+-+...+..-..|+..|+..
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666566666655443
No 66
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.67 E-value=0.83 Score=46.80 Aligned_cols=85 Identities=14% Similarity=0.285 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 166 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED--KCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRII 243 (270)
Q Consensus 166 ipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~--~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El 243 (270)
......++..++..+..+...++.++..+..|..+.+.+.. -+.....|+-+.=.-|+--+.++...-.+-..+..++
T Consensus 442 ~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 442 SKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI 521 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888888888888888888888877555443 2233334444433333333444444444444444444
Q ss_pred HHHHHHH
Q psy5601 244 DTLNHQL 250 (270)
Q Consensus 244 ~~l~e~l 250 (270)
..+.+.+
T Consensus 522 N~l~gkL 528 (594)
T PF05667_consen 522 NSLTGKL 528 (594)
T ss_pred HHHHHHH
Confidence 4444443
No 67
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.61 E-value=0.00051 Score=71.11 Aligned_cols=141 Identities=21% Similarity=0.377 Sum_probs=0.0
Q ss_pred hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh-----HHHHHHHHHhhhhhch-------
Q psy5601 68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSE-----AAVELRKELTSVRSKN------- 135 (270)
Q Consensus 68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~-----~~~ele~e~~~l~~~~------- 135 (270)
.+....+.|.--..+....|.....+...+..++..|...+..++.....++ ....+...+..+...+
T Consensus 183 ~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~ 262 (713)
T PF05622_consen 183 RLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQR 262 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555666666666666677777666665541111111 1222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHH---HHHH---hhhhHHHHHHHHHhhHHHHHHH
Q psy5601 136 ETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNET---LDSE---LKCRDEEVKKLTNAKHAVEDKC 208 (270)
Q Consensus 136 eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~---lE~~---l~~~d~el~~L~~e~e~l~~~~ 208 (270)
+.++..+..++.++..|+.++.+|-..-..+..|+++++.++.+-++ +|.. ++.+=.++..++.++..|.++.
T Consensus 263 ~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N 341 (713)
T PF05622_consen 263 DDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDN 341 (713)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555666666777766666656777788888888775554 3332 2334444455555444444433
No 68
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.58 E-value=0.65 Score=43.46 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=24.4
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601 163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 200 (270)
Q Consensus 163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e 200 (270)
.+.++.|++..+-|.+.|..+++.+..++.+++.....
T Consensus 136 n~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trda 173 (305)
T PF14915_consen 136 NSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDA 173 (305)
T ss_pred cchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666777777777777777666666655443
No 69
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.54 E-value=0.72 Score=43.44 Aligned_cols=136 Identities=21% Similarity=0.247 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q psy5601 120 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN 199 (270)
Q Consensus 120 ~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~ 199 (270)
.++.|++++..|+.....|..+-..+++.-..|-..+ ..+...-+.++..|.++|.+--........+|..|..
T Consensus 168 Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dc------v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 168 KLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDC------VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHH------HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666665555555544442222 3445555666667777777666666666777777777
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5601 200 AKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIH 261 (270)
Q Consensus 200 e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~ 261 (270)
++-++..++..+...+.++-..+.....-=..+.....+++..-......+-.-..+|..+|
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 76666666666666666644444444443333444444444444444444444444444443
No 70
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.53 E-value=1.2 Score=45.75 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 241 RIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 241 ~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
..++.-++..++-+.+...++++|..+
T Consensus 498 ~NI~KQk~eI~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 498 KNIRKQKEEIEKILSDTRELQKEINSL 524 (594)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666666666543
No 71
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.52 E-value=0.93 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5601 223 SLVQAQLDTLLASQDAQRRIID 244 (270)
Q Consensus 223 ~~LE~~Lee~~~~~~~~~~El~ 244 (270)
..-+..++++......++.++.
T Consensus 220 ~~~q~~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 220 SADQKKLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333333333333333333
No 72
>KOG0964|consensus
Probab=96.49 E-value=1.5 Score=46.93 Aligned_cols=89 Identities=21% Similarity=0.306 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 169 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 169 l~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e 248 (270)
.+.+...|..+|.++++.+..++++|+.+...+.++..++. .+-..+-++..+++++...+.++=.|=..|..
T Consensus 409 ~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~-------~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~ 481 (1200)
T KOG0964|consen 409 TKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRME-------EFDAENTELKRELDELQDKRKELWREEKKLRS 481 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444333333333332 23333344444455555555555555555555
Q ss_pred HHhHHHHHHHHHHHHH
Q psy5601 249 QLAGRVAELATIHREI 264 (270)
Q Consensus 249 ~ld~ki~eL~el~~~l 264 (270)
.++.+..+|....+.|
T Consensus 482 ~i~~~~~dl~~~~~~L 497 (1200)
T KOG0964|consen 482 LIANLEEDLSRAEKNL 497 (1200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554444
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.47 E-value=0.81 Score=43.19 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhhhh----HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 165 AAVELRKELTSVRSKNETLDSELKCR----DEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQR 240 (270)
Q Consensus 165 eipel~~e~~~L~~~l~~lE~~l~~~----d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~ 240 (270)
-.|.+......|..++..+....... ..+|..++.++..+..++......+.+++.++..++..++++.....++.
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~ 257 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELL 257 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666554443321 13455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHh
Q psy5601 241 RIIDTLNHQLA 251 (270)
Q Consensus 241 ~El~~l~e~ld 251 (270)
.++..+...++
T Consensus 258 ~eI~e~~~~~~ 268 (325)
T PF08317_consen 258 AEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 74
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.46 E-value=0.33 Score=45.86 Aligned_cols=134 Identities=22% Similarity=0.287 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q psy5601 85 ANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCK 164 (270)
Q Consensus 85 a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~ 164 (270)
+-==.|..++ +.+=...|...+..+.+ ....|....+-+..-+..+......+..|+..|++...+++.-+
T Consensus 132 ~~WYeWR~kl--legLk~~L~~~~~~l~~------D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d- 202 (312)
T smart00787 132 KMWYEWRMKL--LEGLKEGLDENLEGLKE------DYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD- 202 (312)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC-
Confidence 3334566665 44444444444444443 22222233333444444555555555566666665554444311
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601 165 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL 232 (270)
Q Consensus 165 eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~ 232 (270)
.++...++.+|..+...+..+...+.+++.++..+...++....++.++...|..++..++..
T Consensus 203 -----~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~ 265 (312)
T smart00787 203 -----PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQC 265 (312)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 123455566666666666666666666666666666666666666666666666666655443
No 75
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.44 E-value=0.91 Score=46.08 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=32.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhccc------hhHHHHHHHHHhhhhh-----chHHHHHHHHHHHHHHHHHHH
Q psy5601 87 VEEWKKQLQA-YKEENQKLKTKYIELEATKGV------SEAAVELRKELTSVRS-----KNETLDSELKCRDEEVKKLTN 154 (270)
Q Consensus 87 v~~wk~qL~~-l~een~rL~~~i~Ele~~~~~------~~~~~ele~e~~~l~~-----~~eele~eL~~~e~Eie~L~~ 154 (270)
|..+=.++.. +=+....|..-+.++..+|-. +..+..|...+..... .++..+..+..+...|+.|-.
T Consensus 217 iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd 296 (569)
T PRK04778 217 IPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYD 296 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 345666666667776654432 2244444444444211 333444444445555554443
Q ss_pred hh
Q psy5601 155 AK 156 (270)
Q Consensus 155 qi 156 (270)
.+
T Consensus 297 ~l 298 (569)
T PRK04778 297 IL 298 (569)
T ss_pred HH
Confidence 33
No 76
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.42 E-value=1.2 Score=45.78 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhH
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQ 213 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~ 213 (270)
++.+++..+..+........+-++.+.+....|.---+++-.|+..|.+++.....+-. +.-++...++....
T Consensus 123 rL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltn-------e~~elt~~lq~Eq~ 195 (617)
T PF15070_consen 123 RLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTN-------ENMELTSALQSEQH 195 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------hhhHhhHHHHHHHH
Confidence 44455555555444444444444444444444444555556666666665554443322 22223344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601 214 ENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAG 252 (270)
Q Consensus 214 r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ 252 (270)
-+.++..++..++..|..++..+..-..++..|..+++.
T Consensus 196 ~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq 234 (617)
T PF15070_consen 196 VKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQ 234 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555555555555555444555555554443
No 77
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.41 E-value=0.53 Score=40.40 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5601 93 QLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 93 qL~~l~een~rL~~~i~Ele 112 (270)
++..++-+|..|..+|.+.+
T Consensus 43 DFeqLkien~~l~~kIeERn 62 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERN 62 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 78
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=96.40 E-value=0.16 Score=41.46 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=20.7
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
.-|+.+.+.|..++.|+..++.++..|+.
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~ 44 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEA 44 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888777777755544
No 79
>KOG4643|consensus
Probab=96.40 E-value=1.8 Score=46.48 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=28.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5601 204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINT 266 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~ 266 (270)
|...+-.++.+|+.|-.+|..|... .......+..=..+......+...++.|..+++..-+
T Consensus 535 Le~~l~~lE~ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~ 596 (1195)
T KOG4643|consen 535 LEELLGNLEEENAHLLKQIQSLKTT-SQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEK 596 (1195)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444332 1222233333345555566666777777776555433
No 80
>KOG0978|consensus
Probab=96.40 E-value=1.5 Score=45.55 Aligned_cols=102 Identities=15% Similarity=0.189 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH-------HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 165 AAVELRKELTSVRSKNETLDSELKCRDEEVKKL-------TNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 165 eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L-------~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
.+..+...++.+...|..+|..++........+ ..-++.....+..+......|...+...+..|+.++....
T Consensus 511 ~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~ 590 (698)
T KOG0978|consen 511 QILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYA 590 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444554444444333333333 3336666667777777777788888888888888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5601 238 AQRRIIDTLNHQLAGRVAELATIHREINT 266 (270)
Q Consensus 238 ~~~~El~~l~e~ld~ki~eL~el~~~l~~ 266 (270)
.+..+|..+...+-....++..+|+.|.+
T Consensus 591 e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 591 ELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888887765
No 81
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.38 E-value=0.049 Score=47.62 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=26.3
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5601 176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRV 254 (270)
Q Consensus 176 L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki 254 (270)
+...+..++..+......|..|..++..+..++..+...+.+....|..+..++..+.-....++..+..+..+-..++
T Consensus 100 ~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 100 LNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444444444444444444444443433333433333333333
No 82
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.36 E-value=2.2 Score=47.07 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=61.6
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH-HHhh
Q psy5601 78 SALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKL-TNAK 156 (270)
Q Consensus 78 ~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L-~~qi 156 (270)
.+..........|+..+..+..+..++...+.+... ++..+...+.+.+...+..|+..+..-..- ...|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~---------~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i 344 (1201)
T PF12128_consen 274 ADEQQLEQEQPELKEELNELNEELEKLEDEIKELRD---------ELNKELSALNADLARIKSELDEIEQQKKDYEDADI 344 (1201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 333444444555555555555555555555544322 111222223333333333333222222221 1134
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhh
Q psy5601 157 HAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK 201 (270)
Q Consensus 157 ~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~ 201 (270)
..+....+..|.+..+++.+...+..|.+...++....+.+...+
T Consensus 345 ~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l 389 (1201)
T PF12128_consen 345 EQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKL 389 (1201)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444677788888888888888888888888888877776663
No 83
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.34 E-value=0.061 Score=47.05 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 81 QESTANVEEWKKQLQAYKEENQKLKTKYIELEA 113 (270)
Q Consensus 81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~ 113 (270)
......+..|..+|..+...+..+..+|..+..
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~ 102 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELND 102 (194)
T ss_dssp ---------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 344455666666666666666666666665553
No 84
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.28 E-value=1.3 Score=43.75 Aligned_cols=117 Identities=12% Similarity=0.171 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-h--
Q psy5601 88 EEWKKQLQAYKEENQKLKTKYIELEA-TKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-C-- 163 (270)
Q Consensus 88 ~~wk~qL~~l~een~rL~~~i~Ele~-~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~-- 163 (270)
.=+..++..++.+......++..-.. ++...+ +....+..++..+..++...+.++..++.++..+... .
T Consensus 164 ~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~------~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~ 237 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAENRLKAFKQENGGILP------DQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGE 237 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCc------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 33456666666666666666665432 221111 0111222344444444444444444444444444432 1
Q ss_pred ---------hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHH
Q psy5601 164 ---------KAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKL 210 (270)
Q Consensus 164 ---------~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~ 210 (270)
..+..+..++..++.++..+-.++.+....+..++.+++.+...+..
T Consensus 238 ~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 238 EPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred CCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 11234667777777777777777776666777776666666555433
No 85
>KOG0979|consensus
Probab=96.23 E-value=1 Score=48.22 Aligned_cols=97 Identities=14% Similarity=0.273 Sum_probs=53.5
Q ss_pred HHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h--ccchhHHHHHHHHHhhhhhchHHHH
Q psy5601 65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEA---T--KGVSEAAVELRKELTSVRSKNETLD 139 (270)
Q Consensus 65 el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~---~--~~~~~~~~ele~e~~~l~~~~eele 139 (270)
+|-+|+.....|-.++...+.-+.+++..++.|....++++.+-.-+.. + ...--.-+....+...+...++.++
T Consensus 182 eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k 261 (1072)
T KOG0979|consen 182 ELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAK 261 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHH
Confidence 5667777777777777777666677666666666665555544321110 0 0000011222334455555666666
Q ss_pred HHHHHHHHHHHHHHHhhHHhhh
Q psy5601 140 SELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 140 ~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
.++..+..++..+...+++|+.
T Consensus 262 ~~~r~l~k~~~pi~~~~eeLe~ 283 (1072)
T KOG0979|consen 262 KELRKLEKEIKPIEDKKEELES 283 (1072)
T ss_pred HHHHHHHHhhhhhhhhhhhHHh
Confidence 6666666666666666655554
No 86
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.17 E-value=1.9 Score=44.54 Aligned_cols=155 Identities=17% Similarity=0.267 Sum_probs=70.3
Q ss_pred hhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q psy5601 69 LKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEE 148 (270)
Q Consensus 69 Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~E 148 (270)
|.-+|..+.--.......++....++...+..-.++...|..++ +....++..++.+..++..+..|
T Consensus 497 LslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Le-------------e~~~~Lrneles~~eel~~k~~E 563 (786)
T PF05483_consen 497 LSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLE-------------ETNTQLRNELESVKEELKQKGEE 563 (786)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433444445555555555555555555555555554 33444555555555555544444
Q ss_pred HHHHHHhhHHhhh-hhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5601 149 VKKLTNAKHAVED-KCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQA 227 (270)
Q Consensus 149 ie~L~~qi~~LE~-~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~ 227 (270)
+...-...++--. ...++.....++-.+...+..|.+.+.++..-|..|..+..-|..++-....+...++.+|..|+.
T Consensus 564 v~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~ 643 (786)
T PF05483_consen 564 VKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQE 643 (786)
T ss_pred HHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432222111000 012222233333344444444444444444444444444444444444444444445555555555
Q ss_pred HHHHHHHHH
Q psy5601 228 QLDTLLASQ 236 (270)
Q Consensus 228 ~Lee~~~~~ 236 (270)
+++.++...
T Consensus 644 E~e~~kk~~ 652 (786)
T PF05483_consen 644 ELENLKKKH 652 (786)
T ss_pred HHHHHHhHH
Confidence 555555433
No 87
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.13 E-value=0.31 Score=45.06 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=50.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5601 193 EVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL 257 (270)
Q Consensus 193 el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL 257 (270)
+...|...|+.+....+.+......-+..|.-|+++|...+...+.+..+++.++..+++-....
T Consensus 68 Enq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 68 ENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred hhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334445666677777777777778888999999999999999999999999999888655443
No 88
>KOG0612|consensus
Probab=96.11 E-value=1.7 Score=47.60 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 219 QAAISLVQAQLDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 219 E~~i~~LE~~Lee~~~~~~~~~~El~~l~e 248 (270)
-..+..++.++..++..+.+...++..+.+
T Consensus 622 ~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 622 SEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 333444444444444444444444444443
No 89
>KOG0946|consensus
Probab=96.05 E-value=2.4 Score=44.64 Aligned_cols=48 Identities=8% Similarity=0.060 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREIN 265 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~ 265 (270)
.+.++-++...+.+...+..++..++..++++...++.....+-+.+.
T Consensus 790 ~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le 837 (970)
T KOG0946|consen 790 DQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLE 837 (970)
T ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 445555555557777777777777888888888777777777665554
No 90
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.03 E-value=0.0017 Score=68.76 Aligned_cols=165 Identities=20% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601 81 QESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE 160 (270)
.++.+.+..|+.-...+..++..+...+....+ ....++.....+...+.+|+..+.....+.+.+......+.
T Consensus 338 e~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~------~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~ 411 (859)
T PF01576_consen 338 EEANAKVSSLEKTKKRLQGELEDLTSELEKAQA------AAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELE 411 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444555555555555555555544444333 23333344444555555555555555555555444444443
Q ss_pred hhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy5601 161 DKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKH-------AVEDKCKLLSQENAELQAAISLVQAQLDTLL 233 (270)
Q Consensus 161 ~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e-------~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~ 233 (270)
. ++-.|+..++.+...+..++..-..+..+|.+|...+. +|...+-.++..+.++...+.+++..|....
T Consensus 412 t---e~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E 488 (859)
T PF01576_consen 412 T---ELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEE 488 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H---HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 44445555555555666665555555555555544432 2333444445555555555555556666555
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q psy5601 234 ASQDAQRRIIDTLNHQLAGRV 254 (270)
Q Consensus 234 ~~~~~~~~El~~l~e~ld~ki 254 (270)
...-.+..+|..++..++..+
T Consensus 489 ~~~lRl~~el~~~r~e~er~l 509 (859)
T PF01576_consen 489 QKKLRLQVELQQLRQEIEREL 509 (859)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666655554433
No 91
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=96.01 E-value=0.57 Score=42.67 Aligned_cols=116 Identities=28% Similarity=0.388 Sum_probs=74.2
Q ss_pred hHHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHH
Q psy5601 62 WEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSE 141 (270)
Q Consensus 62 ~E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~e 141 (270)
.+..|..+...+.+-..+|.++..-+..+..++...+.+...|.....+++. ....|.........+-..|..+
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee------~~~rL~~~~~~~~eEk~~Le~e 83 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEE------EKQRLEEEAEMQEEEKEQLEQE 83 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778888888888999999999999999999999988888888887776 5555556665555666677777
Q ss_pred HHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHH
Q psy5601 142 LKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSE 186 (270)
Q Consensus 142 L~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~ 186 (270)
+..++.+|..|...+..-+. +...+..++...+..+...-..
T Consensus 84 ~~e~~~~i~~l~ee~~~ke~---Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 84 LREAEAEIARLEEESERKEE---EAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776644443 4445555555555544444333
No 92
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.98 E-value=1 Score=39.70 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Q psy5601 136 ETLDSELKCRDEEVKKLTNAKHA 158 (270)
Q Consensus 136 eele~eL~~~e~Eie~L~~qi~~ 158 (270)
-.++..+...+.++.+++..+..
T Consensus 85 r~~~~klk~~~~el~k~~~~l~~ 107 (194)
T PF15619_consen 85 RELERKLKDKDEELLKTKDELKH 107 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 93
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.97 E-value=2.3 Score=44.91 Aligned_cols=142 Identities=20% Similarity=0.313 Sum_probs=78.5
Q ss_pred HHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-----------hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHH
Q psy5601 125 RKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-----------CKAAVELRKELTSVRSKNETLDSELKCRDEE 193 (270)
Q Consensus 125 e~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-----------~~eipel~~e~~~L~~~l~~lE~~l~~~d~e 193 (270)
..+...+...-..++..+..+...++.++.++.+++.. ..--.....++......+..++.++...+.+
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E 674 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAE 674 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 34444444444444444444444444444444433321 0111223445555566666666666666777
Q ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhHHHHHHHHHHH
Q psy5601 194 VKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQ-----------RRIIDTLNHQLAGRVAELATIHR 262 (270)
Q Consensus 194 l~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~-----------~~El~~l~e~ld~ki~eL~el~~ 262 (270)
++.+...+..|..+++..-.--.++..+-.+|+.+|+......... ..||....+.|..=...|..|-+
T Consensus 675 ~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGk 754 (769)
T PF05911_consen 675 AEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGK 754 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666666666666665555566667777777776665433211 33666666667666677777766
Q ss_pred HHHH
Q psy5601 263 EINT 266 (270)
Q Consensus 263 ~l~~ 266 (270)
.|-.
T Consensus 755 QLks 758 (769)
T PF05911_consen 755 QLKS 758 (769)
T ss_pred HHHh
Confidence 6643
No 94
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.97 E-value=2.6 Score=44.15 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=52.3
Q ss_pred HHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHH---
Q psy5601 63 EIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLD--- 139 (270)
Q Consensus 63 E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele--- 139 (270)
|..|+.--+-.+.+..-+.+..+.+++.+..+...+.+|++|...+.++.. ..+.++.++..|+..|.+++
T Consensus 19 e~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~------~~~~~e~~~~~lr~e~ke~K~rE 92 (717)
T PF09730_consen 19 ESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRK------ECEDLELERKRLREEIKEYKFRE 92 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443333344566666777888888888888888888888888877765 33334444444444443333
Q ss_pred ----HHHHHHHHHHHHHHHhh
Q psy5601 140 ----SELKCRDEEVKKLTNAK 156 (270)
Q Consensus 140 ----~eL~~~e~Eie~L~~qi 156 (270)
.+..++++|+-.|+++|
T Consensus 93 ~rll~dyselEeENislQKqv 113 (717)
T PF09730_consen 93 ARLLQDYSELEEENISLQKQV 113 (717)
T ss_pred HHHhhhhHHHHHHHHHHHHHH
Confidence 33344555555555555
No 95
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.95 E-value=0.0019 Score=66.93 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=0.0
Q ss_pred HhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5601 66 LANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLK 105 (270)
Q Consensus 66 l~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~ 105 (270)
+..|+..+.++..++.+....+...+.++..++.+|..|.
T Consensus 248 l~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~ 287 (713)
T PF05622_consen 248 LRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQ 287 (713)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555444444444444444444444444444433
No 96
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.93 E-value=0.76 Score=37.76 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=14.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5601 204 VEDKCKLLSQENAELQAAISLVQAQLD 230 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~~LE~~Le 230 (270)
+...+..+..|+.+|..++.-|..+|+
T Consensus 103 le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 103 LEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555554
No 97
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.92 E-value=3.4 Score=46.30 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHH
Q psy5601 135 NETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA 203 (270)
Q Consensus 135 ~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~ 203 (270)
+..+...+.++...+..+.-....+-.-...+|....+++.+...+...+.++.....++..+..++..
T Consensus 846 l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~ 914 (1353)
T TIGR02680 846 LEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRT 914 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544444433344556666666666666665555555555555555444333
No 98
>KOG1003|consensus
Probab=95.92 E-value=1.1 Score=39.59 Aligned_cols=100 Identities=14% Similarity=0.229 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q psy5601 169 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLV-------QAQLDTLLASQDAQRR 241 (270)
Q Consensus 169 l~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~L-------E~~Lee~~~~~~~~~~ 241 (270)
+...++...++.+..++.+..+..+++.+......++..-+.+..+....+..|+.+ +..-+-+..++..+..
T Consensus 93 iE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLek 172 (205)
T KOG1003|consen 93 IEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEK 172 (205)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcc
Confidence 334444444555555555566666666665555444444444444444433333333 3333334444444444
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy5601 242 IIDTLNHQLAGRVAELATIHREINTAL 268 (270)
Q Consensus 242 El~~l~e~ld~ki~eL~el~~~l~~~~ 268 (270)
++..|...+......+..+++.|-..+
T Consensus 173 e~DdlE~kl~~~k~ky~~~~~eLD~~~ 199 (205)
T KOG1003|consen 173 ERDDLEEKLEEAKEKYEEAKKELDETL 199 (205)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555554443
No 99
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.87 E-value=1.7 Score=43.27 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 87 VEEWKKQLQAYKEENQKLKTKYIELEA 113 (270)
Q Consensus 87 v~~wk~qL~~l~een~rL~~~i~Ele~ 113 (270)
+--+-.++++++..|.+|-..|.+...
T Consensus 266 ~~~i~~~i~~lk~~n~~l~e~i~ea~k 292 (622)
T COG5185 266 VHIINTDIANLKTQNDNLYEKIQEAMK 292 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566788888999998888887663
No 100
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.86 E-value=2.8 Score=43.89 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=34.4
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601 79 ALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA 158 (270)
Q Consensus 79 al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~ 158 (270)
-|+++.+--..+...|..++.+.-+++..+.... .++..|.....++.......+.+...|+..|.+
T Consensus 21 Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~-------------~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke 87 (717)
T PF09730_consen 21 LLQESASKEAYLQQRILELENELKQLRQELSNVQ-------------AENERLSQLNQELRKECEDLELERKRLREEIKE 87 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455655556666666666666655555554333 233333344444444444444444445554444
Q ss_pred hh
Q psy5601 159 VE 160 (270)
Q Consensus 159 LE 160 (270)
+.
T Consensus 88 ~K 89 (717)
T PF09730_consen 88 YK 89 (717)
T ss_pred HH
Confidence 43
No 101
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.85 E-value=1.5 Score=40.54 Aligned_cols=30 Identities=10% Similarity=0.264 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 83 STANVEEWKKQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele 112 (270)
+..++..+..+|+.+......+..++.+..
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~ 72 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQ 72 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 102
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.78 E-value=1.5 Score=39.85 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601 135 NETLDSELKCRDEEVKKLTNAKHAV 159 (270)
Q Consensus 135 ~eele~eL~~~e~Eie~L~~qi~~L 159 (270)
+-.+...|.....+.+.|+.+|..+
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555433
No 103
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.77 E-value=0.78 Score=39.50 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy5601 136 ETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 136 eele~eL~~~e~Eie~L~~qi 156 (270)
..+...+..+..|+..+...+
T Consensus 84 ~~~~~~l~~l~~el~~l~~~~ 104 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQERI 104 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444333
No 104
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.70 E-value=1.1 Score=42.46 Aligned_cols=88 Identities=10% Similarity=0.133 Sum_probs=50.8
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHHHhhhh----HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 163 CKAAVELRKELTSVRSKNETLDSELKCR----DEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDA 238 (270)
Q Consensus 163 ~~eipel~~e~~~L~~~l~~lE~~l~~~----d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~ 238 (270)
++-.|.+......|..++..|...-... ..++..++.++..+..++........+++.++..+...+++......+
T Consensus 171 ~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e 250 (312)
T smart00787 171 NSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSE 250 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777777777776655444433 225555555555555555555555555666666666666666666555
Q ss_pred HHHHHHHHHHHH
Q psy5601 239 QRRIIDTLNHQL 250 (270)
Q Consensus 239 ~~~El~~l~e~l 250 (270)
+..++..+...+
T Consensus 251 ~~~~I~~ae~~~ 262 (312)
T smart00787 251 LNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 105
>KOG1029|consensus
Probab=95.67 E-value=1.4 Score=46.24 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL 257 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL 257 (270)
++.++..+..+.+.+....+-+...++.|++....++-..
T Consensus 547 ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lak 586 (1118)
T KOG1029|consen 547 IKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAK 586 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555544433
No 106
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.66 E-value=0.94 Score=42.00 Aligned_cols=149 Identities=15% Similarity=0.178 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh----
Q psy5601 87 VEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK---- 162 (270)
Q Consensus 87 v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~---- 162 (270)
|..++.+++.++.++.+-.=.|.-+++ .+.--....+..+.+...|+.+...+-+..++|.+....|.-.
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEA------aLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~K 93 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEA------ALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVK 93 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhh
Confidence 566666777777766665555655555 3322222223333344444444444444444444433333322
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH------------------HHHHHHH
Q psy5601 163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE------------------LQAAISL 224 (270)
Q Consensus 163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~------------------lE~~i~~ 224 (270)
.+.+.-+.-++..-...|+ .++.+|..++.+++....-.......+.- ...+.++
T Consensus 94 e~qv~~lEgQl~s~Kkqie-------~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~ 166 (307)
T PF10481_consen 94 ESQVNFLEGQLNSCKKQIE-------KLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEE 166 (307)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHH
Confidence 3333333333333333333 33444444444444333322222211111 3456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 225 VQAQLDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 225 LE~~Lee~~~~~~~~~~El~~l~e 248 (270)
|+.....--.....++.|++.|.-
T Consensus 167 L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 167 LQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhc
Confidence 666666666666777777777763
No 107
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.58 E-value=5.3 Score=44.85 Aligned_cols=16 Identities=6% Similarity=-0.058 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHhhH
Q psy5601 166 AVELRKELTSVRSKNE 181 (270)
Q Consensus 166 ipel~~e~~~L~~~l~ 181 (270)
.+.+...++.....+.
T Consensus 846 l~~~~~aL~~y~~~l~ 861 (1353)
T TIGR02680 846 LEAVGLALKRFGDHLH 861 (1353)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 108
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.56 E-value=1.6 Score=38.67 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 211 LSQENAELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 211 ~~~r~~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
.+-++--|+.++..|...|+.....+.
T Consensus 141 ~~~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 141 TGLKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554444444
No 109
>KOG0999|consensus
Probab=95.53 E-value=3.2 Score=42.11 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=18.8
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy5601 129 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK 162 (270)
Q Consensus 129 ~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~ 162 (270)
+.+-..|-+|+.+|..+..++.+.+...+.++..
T Consensus 103 ~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~ 136 (772)
T KOG0999|consen 103 EYYLQKILELENELKQLRQELTNVQEENERLEKV 136 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666555555555555555544
No 110
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=95.50 E-value=0.26 Score=36.87 Aligned_cols=69 Identities=20% Similarity=0.327 Sum_probs=56.5
Q ss_pred HHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 183 LDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA 251 (270)
Q Consensus 183 lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld 251 (270)
++..|..+|..|..|+.+.+.|+..--...+-+..|...+..++..+..+..+.+....++..|...+.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566788899999999999888888888888888888888888888888888888877777777776654
No 111
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.45 E-value=0.86 Score=40.50 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=9.6
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q psy5601 243 IDTLNHQLAGRVAELATIHR 262 (270)
Q Consensus 243 l~~l~e~ld~ki~eL~el~~ 262 (270)
+..|....+.+..+|...|+
T Consensus 133 ~~~l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQ 152 (202)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 34444445555555554444
No 112
>KOG1853|consensus
Probab=95.44 E-value=2.1 Score=39.42 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhHHHHHHhhhh
Q psy5601 169 LRKELTSVRSKNETLDSELKCR 190 (270)
Q Consensus 169 l~~e~~~L~~~l~~lE~~l~~~ 190 (270)
....+++++.-|..||-+-+++
T Consensus 103 t~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 103 THAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHhccHH
Confidence 3444444555555554444443
No 113
>PF15294 Leu_zip: Leucine zipper
Probab=95.34 E-value=2 Score=39.95 Aligned_cols=101 Identities=24% Similarity=0.284 Sum_probs=60.2
Q ss_pred hHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhccchhH---HH----HHHHHHhhhhhchHHHHHHHHHHHHHHH
Q psy5601 80 LQESTANVEEW--KKQLQAYKEENQKLKTKYIELEATKGVSEA---AV----ELRKELTSVRSKNETLDSELKCRDEEVK 150 (270)
Q Consensus 80 l~Es~a~v~~w--k~qL~~l~een~rL~~~i~Ele~~~~~~~~---~~----ele~e~~~l~~~~eele~eL~~~e~Eie 150 (270)
|...-....+| +-+...-.-+|..|-..|.+.+.+....+. .. -|...++. ...+-+..+|.++..|..
T Consensus 65 lrql~~qAek~~lkl~~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~--g~~~ll~kEi~rLq~EN~ 142 (278)
T PF15294_consen 65 LRQLFSQAEKWYLKLQTDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNES--GGSELLNKEIDRLQEENE 142 (278)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccccc--chHHHHHHHHHHHHHHHH
Confidence 36666777888 545445555777788888877654322111 00 01111111 223458899999999999
Q ss_pred HHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHH
Q psy5601 151 KLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDS 185 (270)
Q Consensus 151 ~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~ 185 (270)
.|+.++..++..|... ..+...|...|.++..
T Consensus 143 kLk~rl~~le~~at~~---l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 143 KLKERLKSLEKQATSA---LDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 9999999999875443 3334444455554444
No 114
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.33 E-value=3.7 Score=41.56 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=37.3
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhh
Q psy5601 78 SALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVR 132 (270)
Q Consensus 78 ~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~ 132 (270)
..+.+......++.........+.+.|+-+|.++++..-.|.+.++|+.+...|.
T Consensus 168 ~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~ 222 (563)
T TIGR00634 168 QAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLS 222 (563)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHh
Confidence 3344455555666666666777778888888888887777777777777665554
No 115
>KOG0994|consensus
Probab=95.30 E-value=5.8 Score=43.59 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=10.0
Q ss_pred hhhhhHHHHHH----HHHhh
Q psy5601 14 SDIRANTVSLV----QAQLD 29 (270)
Q Consensus 14 ad~~an~~~~~----~~~l~ 29 (270)
|-++||-.++. +++|.
T Consensus 1406 a~t~A~~A~~~A~~~~~~l~ 1425 (1758)
T KOG0994|consen 1406 AVTRAGGALLMAGDADTQLR 1425 (1758)
T ss_pred hhcccchHHHHhhhHHHHHH
Confidence 45677777776 44554
No 116
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=95.18 E-value=0.29 Score=44.22 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=59.2
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 193 EVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 193 el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
++.+++...+++..+++.+...+.++-..+..++.++++.+.+..+++.+...|.+.++.+..++..+++-+..|
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 344566667777788888888888888888888888888888888888888888888888888888877665443
No 117
>KOG0976|consensus
Probab=95.18 E-value=5.2 Score=42.38 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=29.5
Q ss_pred chhHHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 60 KKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIEL 111 (270)
Q Consensus 60 ~~~E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~El 111 (270)
-+.+.+|..=++.=-+...+|.+++..+-....|+..+-++++++..++.++
T Consensus 151 h~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k 202 (1265)
T KOG0976|consen 151 HKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEK 202 (1265)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443434444455555555556667777777777777666665544
No 118
>KOG4673|consensus
Probab=95.16 E-value=4.8 Score=41.88 Aligned_cols=100 Identities=19% Similarity=0.246 Sum_probs=48.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccch-hHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601 82 ESTANVEEWKKQLQAYKEENQKLKTKYIELEA--TKGVS-EAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA 158 (270)
Q Consensus 82 Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~--~~~~~-~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~ 158 (270)
+....|...++.+.++-.+..-|+..+.-+.. +..-+ ..+.+-.+-+..|.++=+.|-.++-....=|..||+++.+
T Consensus 406 e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke 485 (961)
T KOG4673|consen 406 EYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKE 485 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 34444555555555555555555555442211 00000 1233333444555556666666666667777778777754
Q ss_pred hh---hh-hhhhHHHHHHHHHHHHhhH
Q psy5601 159 VE---DK-CKAAVELRKELTSVRSKNE 181 (270)
Q Consensus 159 LE---~~-~~eipel~~e~~~L~~~l~ 181 (270)
-+ .+ +..|..|.++...|+.-++
T Consensus 486 ~etl~~K~ge~i~~L~sE~~~lk~il~ 512 (961)
T KOG4673|consen 486 AETLEEKKGELITKLQSEENKLKSILR 512 (961)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 33 22 3344444444444444333
No 119
>KOG0018|consensus
Probab=95.14 E-value=4.8 Score=43.66 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=33.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601 204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI 264 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l 264 (270)
+...++....++..+...|.++...+++.....+.+........+.-....++|..++..|
T Consensus 414 l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql 474 (1141)
T KOG0018|consen 414 LKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQL 474 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3444444555555555556666666666655555555555555555555555555554444
No 120
>KOG0994|consensus
Probab=95.12 E-value=5.3 Score=43.84 Aligned_cols=40 Identities=3% Similarity=0.025 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5601 219 QAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELA 258 (270)
Q Consensus 219 E~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~ 258 (270)
-.++.+|+......+.++.....+|..|...+...+..|+
T Consensus 1709 l~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1709 LDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3344555555555555555555555555555554444443
No 121
>KOG0946|consensus
Probab=95.05 E-value=4 Score=43.09 Aligned_cols=100 Identities=13% Similarity=0.174 Sum_probs=52.9
Q ss_pred HhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhh--hHHHHHHHHHHHHhhHHHHHHhh
Q psy5601 112 EATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKA--AVELRKELTSVRSKNETLDSELK 188 (270)
Q Consensus 112 e~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~e--ipel~~e~~~L~~~l~~lE~~l~ 188 (270)
++.+..+..+..++.+...+...-.-+.+++..+..-++..++....=+.. ++. .-...+++-++..++.+...++.
T Consensus 730 e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~ 809 (970)
T KOG0946|consen 730 EASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQ 809 (970)
T ss_pred HhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHH
Confidence 333334445555555555555555556666655555565555544322211 222 22344555566556666666667
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHH
Q psy5601 189 CRDEEVKKLTNAKHAVEDKCKLL 211 (270)
Q Consensus 189 ~~d~el~~L~~e~e~l~~~~e~~ 211 (270)
+...+++.++.++..+..++...
T Consensus 810 ~~q~e~~~~keq~~t~~~~tsa~ 832 (970)
T KOG0946|consen 810 ELQSELTQLKEQIQTLLERTSAA 832 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 77767666666655544444333
No 122
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.03 E-value=2.4 Score=38.61 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=36.7
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601 173 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAG 252 (270)
Q Consensus 173 ~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ 252 (270)
...+...-..|+.........+..|.............+..++.+++..|..|.............++.++......+..
T Consensus 42 ~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 42 LKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444555555555544444444444555555555555555555555555555555555555544444
Q ss_pred HHHHH
Q psy5601 253 RVAEL 257 (270)
Q Consensus 253 ki~eL 257 (270)
....|
T Consensus 122 ak~~L 126 (246)
T PF00769_consen 122 AKEEL 126 (246)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 123
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.02 E-value=0.38 Score=42.84 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 167 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTL 246 (270)
Q Consensus 167 pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l 246 (270)
|....++..++.++..+..++.+.+...+. ...++.+++......+.+++.++..|..+|..++...+.++.++..+
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQ---RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433332 23334444444555555566666666666666666666555555555
Q ss_pred HHHH
Q psy5601 247 NHQL 250 (270)
Q Consensus 247 ~e~l 250 (270)
....
T Consensus 166 ~~~~ 169 (206)
T PRK10884 166 QRTI 169 (206)
T ss_pred HHHH
Confidence 5443
No 124
>KOG2991|consensus
Probab=94.93 E-value=3.1 Score=38.46 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhh--hhh--------hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh-----hH
Q psy5601 138 LDSELKCRDEEVKKLTNAKHAVEDK--CKA--------AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA-----KH 202 (270)
Q Consensus 138 le~eL~~~e~Eie~L~~qi~~LE~~--~~e--------ipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e-----~e 202 (270)
+-.++..++.|+..+..+|..|..+ .+- -|.+...-..|+..++...+.|.....+|..-+.- -.
T Consensus 134 lv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK 213 (330)
T KOG2991|consen 134 LVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGK 213 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchH
Confidence 3445555666666667777666665 111 25666666666666666666666665555443332 33
Q ss_pred HHHHHHHHHhHHHHH-----HHHHHHHHHHHHHH
Q psy5601 203 AVEDKCKLLSQENAE-----LQAAISLVQAQLDT 231 (270)
Q Consensus 203 ~l~~~~e~~~~r~~~-----lE~~i~~LE~~Lee 231 (270)
.|..+|-.+..+|.+ .+.+|..|+.+|.=
T Consensus 214 ~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAm 247 (330)
T KOG2991|consen 214 MLMAKCRTLQQENEELGHQASEGRIAELEIELAM 247 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHH
Confidence 477788888888877 56777777777653
No 125
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.91 E-value=6.1 Score=41.79 Aligned_cols=97 Identities=11% Similarity=0.179 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 168 ELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLN 247 (270)
Q Consensus 168 el~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~ 247 (270)
....++..+...|.++|..|..+..+|..++.-..-+..++......+..++.+...++.++..+......++.+|..-+
T Consensus 614 ~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er 693 (769)
T PF05911_consen 614 SCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKER 693 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554433333344444445444555555555555555555555555555554444
Q ss_pred HHHhHHHHHHHHHHHHH
Q psy5601 248 HQLAGRVAELATIHREI 264 (270)
Q Consensus 248 e~ld~ki~eL~el~~~l 264 (270)
.--+.......++...|
T Consensus 694 ~~~~e~~~kc~~Le~el 710 (769)
T PF05911_consen 694 ALSEELEAKCRELEEEL 710 (769)
T ss_pred hcchhhhhHHHHHHHHH
Confidence 44444444444444444
No 126
>KOG1029|consensus
Probab=94.91 E-value=6.1 Score=41.74 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601 200 AKHAVEDKCKLLSQENAELQAAISLVQAQLDTL 232 (270)
Q Consensus 200 e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~ 232 (270)
+++.+...|+..-+.+..+..+|++++..|..+
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444555555544444433
No 127
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.89 E-value=2.5 Score=37.25 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601 201 KHAVEDKCKLLSQENAELQAAISLVQAQLDTL 232 (270)
Q Consensus 201 ~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~ 232 (270)
++.+..++..+..+..+.+.+|..|+..++-.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~ 151 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666555433
No 128
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.82 E-value=0.6 Score=48.64 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5601 226 QAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIH 261 (270)
Q Consensus 226 E~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~ 261 (270)
..++..++..+.........|++....++.+..++.
T Consensus 605 ~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av 640 (722)
T PF05557_consen 605 EKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAV 640 (722)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888888888888888877766554
No 129
>KOG0979|consensus
Probab=94.79 E-value=7.3 Score=42.08 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=13.2
Q ss_pred CcccccccccccchhhhhHHHHH
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVSL 23 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~~ 23 (270)
|||+.|+-.||. +-|.+-|
T Consensus 31 ~Ty~~~e~~pgp----sLNmIiG 49 (1072)
T KOG0979|consen 31 LTYDHTEFLPGP----SLNMIIG 49 (1072)
T ss_pred eeeeeeeecCCC----ceeeEEC
Confidence 688888888886 4454443
No 130
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.71 E-value=6.4 Score=41.08 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHH
Q psy5601 165 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKL 210 (270)
Q Consensus 165 eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~ 210 (270)
.+..|..+...+..++..+-.++...-..+..++.+++++...+..
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~ 334 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRS 334 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666665555666666666665555443
No 131
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.70 E-value=4.1 Score=38.73 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=23.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 203 AVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQ 249 (270)
Q Consensus 203 ~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ 249 (270)
.+-.+++.+..++..++..+..+-.+.+++..+.+.++....+|..+
T Consensus 130 ~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~E 176 (319)
T PF09789_consen 130 DLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHE 176 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555554444444444
No 132
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.51 E-value=8.1 Score=41.39 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=4.8
Q ss_pred HHHhhHHHHHHhh
Q psy5601 176 VRSKNETLDSELK 188 (270)
Q Consensus 176 L~~~l~~lE~~l~ 188 (270)
+...++.++..+.
T Consensus 366 l~~~~~~l~~~~~ 378 (908)
T COG0419 366 LEERLEELEKELE 378 (908)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 133
>KOG4360|consensus
Probab=94.51 E-value=4.1 Score=40.92 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=72.5
Q ss_pred chHHHHHHHH-HHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHh
Q psy5601 134 KNETLDSELK-CRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLS 212 (270)
Q Consensus 134 ~~eele~eL~-~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~ 212 (270)
-+++|+.++- .+..++..++.++..+-. .+...+.++...-+++..|.+.|.+++..+..+..+++++-.-+....
T Consensus 191 ~~~~keq~~y~~~~KelrdtN~q~~s~~e---el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 191 TYEEKEQQLYGDCVKELRDTNTQARSGQE---ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777 677777777777744432 455666777777777778888888888888777777766666565555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 213 QENAELQAAISLVQAQLDTLLASQDAQRRIIDTLN 247 (270)
Q Consensus 213 ~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~ 247 (270)
.....+....++++.+-.+.-....+.+.||+.|+
T Consensus 268 da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 268 DAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555555555555555555555555555543
No 134
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.78 Score=46.76 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 215 NAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA 251 (270)
Q Consensus 215 ~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld 251 (270)
...++.+|..|+..|.+.....+.++..|..+...+.
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3346777888888888888888888877777765444
No 135
>KOG0976|consensus
Probab=94.49 E-value=7.8 Score=41.11 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=15.6
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHH
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKL 152 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L 152 (270)
.+.+.+++++..++.+|.++-.+|-+.
T Consensus 141 telE~~~srlh~le~eLsAk~~eIf~~ 167 (1265)
T KOG0976|consen 141 IEIENLNSRLHKLEDELSAKAHDIFMI 167 (1265)
T ss_pred HHHHhhHHHHHHHHHHHhhhhHHHHHH
Confidence 445555566666666666655555543
No 136
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.48 E-value=5.5 Score=39.30 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=6.8
Q ss_pred HHHHHHHhhHHhhhh
Q psy5601 148 EVKKLTNAKHAVEDK 162 (270)
Q Consensus 148 Eie~L~~qi~~LE~~ 162 (270)
.+..++.++..+...
T Consensus 255 ~l~~l~~~l~~l~~~ 269 (498)
T TIGR03007 255 RIEALEKQLDALRLR 269 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 137
>KOG0243|consensus
Probab=94.46 E-value=4.6 Score=43.75 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=24.0
Q ss_pred chhHHHHhhhhh------------cchhhh-h-hhHHhhHHHHHHHHHHHHHHHHHH
Q psy5601 60 KKWEIELANLKS------------NNLRLT-S-ALQESTANVEEWKKQLQAYKEENQ 102 (270)
Q Consensus 60 ~~~E~el~~Lk~------------~n~rl~-~-al~Es~a~v~~wk~qL~~l~een~ 102 (270)
+..|..|.||-+ -|-+|. . -+-+....+++++.+|.+.++.|-
T Consensus 372 ~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnG 428 (1041)
T KOG0243|consen 372 HNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNG 428 (1041)
T ss_pred ccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCc
Confidence 457777888765 232222 2 225566666666666666555543
No 138
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.40 E-value=6.1 Score=39.48 Aligned_cols=85 Identities=24% Similarity=0.344 Sum_probs=46.8
Q ss_pred hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy5601 68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDE 147 (270)
Q Consensus 68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~ 147 (270)
.||..|.+|-...+++. +.-.-+..+.+.--.|+.-.--.++ ....|.....+...-|..|..+|..+++
T Consensus 275 ~lk~~n~~l~e~i~ea~----k~s~~i~~l~ek~r~l~~D~nk~~~------~~~~mk~K~~~~~g~l~kl~~eie~kEe 344 (622)
T COG5185 275 NLKTQNDNLYEKIQEAM----KISQKIKTLREKWRALKSDSNKYEN------YVNAMKQKSQEWPGKLEKLKSEIELKEE 344 (622)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHH------HHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 57888877776665532 2222333333333333333322222 3444445556666666667777777777
Q ss_pred HHHHHHHhhHHhhhh
Q psy5601 148 EVKKLTNAKHAVEDK 162 (270)
Q Consensus 148 Eie~L~~qi~~LE~~ 162 (270)
||+-|+.++.+|..+
T Consensus 345 ei~~L~~~~d~L~~q 359 (622)
T COG5185 345 EIKALQSNIDELHKQ 359 (622)
T ss_pred HHHHHHhhHHHHHHH
Confidence 777777766666655
No 139
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.58 Score=47.63 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=13.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy5601 206 DKCKLLSQENAELQAAISLVQAQLDTLL 233 (270)
Q Consensus 206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~ 233 (270)
.++..+..++.+-..+++.|+.+|..++
T Consensus 481 ~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 481 RRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555544
No 140
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.20 E-value=5 Score=37.71 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=30.9
Q ss_pred HHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 65 el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele 112 (270)
.|-.|+.+|++|.+-|..-.-+-.+++.+++.|+.. |.++|.+.+
T Consensus 64 QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsR---LaaAi~d~d 108 (305)
T PF14915_consen 64 QLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSR---LAAAIQDHD 108 (305)
T ss_pred hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH---HHHHHhhHH
Confidence 466788888888888866666777777777777653 445555443
No 141
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.16 E-value=6.3 Score=38.72 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 83 STANVEEWKKQLQAYKEENQKLKTKYIE 110 (270)
Q Consensus 83 s~a~v~~wk~qL~~l~een~rL~~~i~E 110 (270)
..+.+...+.++..++...++|...+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 95 EENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666555443
No 142
>KOG0018|consensus
Probab=94.16 E-value=10 Score=41.21 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=20.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 205 EDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTL 246 (270)
Q Consensus 205 ~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l 246 (270)
.+.+..+.+++.+++.++..+...++.+..++..+..-+..+
T Consensus 394 ~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~ 435 (1141)
T KOG0018|consen 394 QDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSL 435 (1141)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555444444333333333
No 143
>KOG0980|consensus
Probab=94.13 E-value=9.5 Score=40.70 Aligned_cols=10 Identities=10% Similarity=0.441 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy5601 102 QKLKTKYIEL 111 (270)
Q Consensus 102 ~rL~~~i~El 111 (270)
.+++.++..+
T Consensus 361 ~q~~~ql~~l 370 (980)
T KOG0980|consen 361 EQYENQLLAL 370 (980)
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 144
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.13 E-value=1.5 Score=41.39 Aligned_cols=32 Identities=0% Similarity=-0.015 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601 234 ASQDAQRRIIDTLNHQLAGRVAELATIHREIN 265 (270)
Q Consensus 234 ~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~ 265 (270)
.....+..++..+.+.++.....+.-....|.
T Consensus 99 ~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 99 REYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444443
No 145
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.12 E-value=1.1 Score=33.92 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=53.6
Q ss_pred hHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 180 NETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA 251 (270)
Q Consensus 180 l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld 251 (270)
++.||.++...-..|.=|+.+++++.++-..+...+..+...-..|+.+-..++..+......|..|.+.++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456666777666777778888888888777777777776666677777778888877777777777766554
No 146
>PF13166 AAA_13: AAA domain
Probab=94.10 E-value=6.5 Score=40.48 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=20.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 206 DKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
..+.....+...++..+..++..+..+......+..++..+...+
T Consensus 410 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 454 (712)
T PF13166_consen 410 EDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQL 454 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444433
No 147
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.06 E-value=3 Score=37.75 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=7.9
Q ss_pred HHHHHhhHHHHHHhhhhHHHHH
Q psy5601 174 TSVRSKNETLDSELKCRDEEVK 195 (270)
Q Consensus 174 ~~L~~~l~~lE~~l~~~d~el~ 195 (270)
+.|..+-......|+.+..+|+
T Consensus 42 ~~L~~Er~~h~eeLrqI~~DIn 63 (230)
T PF10146_consen 42 EELLQERMAHVEELRQINQDIN 63 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 148
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.03 E-value=1.8 Score=41.77 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=62.1
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601 80 LQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAV 159 (270)
Q Consensus 80 l~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~L 159 (270)
..++..+...|+.++++.--.. +-.+. ...+.=-..++.|..-...+...+...+..|..+..++..--.+|..-
T Consensus 186 i~es~vd~~eWklEvERV~PqL---Kv~~~--~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sR 260 (359)
T PF10498_consen 186 IIESKVDPAEWKLEVERVLPQL---KVTIR--ADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESR 260 (359)
T ss_pred cccccCCHHHHHHHHHHHhhhh---eeecc--CCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777766653332 11110 000000012333333444444444555555555555555444444433
Q ss_pred hhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy5601 160 EDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE 217 (270)
Q Consensus 160 E~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~ 217 (270)
|.- .+++..+..+.-.+..++..+..++....+.+..+..++..++++++.....+.+
T Consensus 261 Ek~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 261 EKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 4444445555555555555555555555555555555555555544444444443
No 149
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.90 E-value=9.9 Score=40.07 Aligned_cols=89 Identities=12% Similarity=0.158 Sum_probs=38.3
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601 173 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAG 252 (270)
Q Consensus 173 ~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ 252 (270)
++.++++-.++-..+.++|.++-.-+...+ -+...+.-+..++-..++.++..|+.++.+-.-+.-.|+ +||.
T Consensus 464 ~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d---~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlr----QrDa 536 (861)
T PF15254_consen 464 IENQKEENKRLRKMFQEKDQELLENKQQFD---IETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLR----QRDA 536 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHH----HHHH
Confidence 344444444444445555555444333321 122222333334444555555555555554443333333 3444
Q ss_pred HHHHHHHH----HHHHHHhh
Q psy5601 253 RVAELATI----HREINTAL 268 (270)
Q Consensus 253 ki~eL~el----~~~l~~~~ 268 (270)
-|.-|.+| +..|+++|
T Consensus 537 Ei~RL~eLtR~LQ~Sma~lL 556 (861)
T PF15254_consen 537 EIERLRELTRTLQNSMAKLL 556 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444443 44445554
No 150
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.87 E-value=1.3 Score=32.84 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=55.0
Q ss_pred hHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 180 NETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 180 l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
++.||..+...-.-|.-|+.++++|.++-..+.+..+++....+.|+++-+.++..+..-...++.|....
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555666666667777888899999888888888888888888888888888888877777777766544
No 151
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.81 E-value=7.1 Score=38.11 Aligned_cols=150 Identities=9% Similarity=0.046 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHH
Q psy5601 93 QLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKE 172 (270)
Q Consensus 93 qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e 172 (270)
|-..++.+...|......+++ ....+.-...+|-..+.+|+.+..++..+-..+..+-.+|-. =...
T Consensus 145 Q~q~lqtrl~~l~~qr~ql~a------q~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~-------r~~a 211 (499)
T COG4372 145 QAQDLQTRLKTLAEQRRQLEA------QAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLAT-------RANA 211 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 333444444444444444443 222233333444444455554444443333333332222222 2234
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601 173 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAG 252 (270)
Q Consensus 173 ~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ 252 (270)
+.+..+++.+.+..+...+..|+.+-..+......+-.-.+.+.+-+.++..||....-++..+..++.=-....+.+..
T Consensus 212 ~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q 291 (499)
T COG4372 212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQ 291 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777777777777777777766666555555555555555555566666666555555555555444444444444
Q ss_pred HHH
Q psy5601 253 RVA 255 (270)
Q Consensus 253 ki~ 255 (270)
++.
T Consensus 292 ~~a 294 (499)
T COG4372 292 AAA 294 (499)
T ss_pred HHH
Confidence 443
No 152
>KOG1937|consensus
Probab=93.69 E-value=8.1 Score=38.34 Aligned_cols=139 Identities=18% Similarity=0.264 Sum_probs=80.2
Q ss_pred HHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH-----hhh-hhchHH
Q psy5601 64 IELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKEL-----TSV-RSKNET 137 (270)
Q Consensus 64 ~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~-----~~l-~~~~ee 137 (270)
.++..|---..|+..+|-++.+++.++...|....-....|......-.- ... .....|.+.. .+- -.+|++
T Consensus 272 selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~-pll-~kkl~Lr~~l~~~e~e~~e~~~Iqe 349 (521)
T KOG1937|consen 272 SELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQ-PLL-QKKLQLREELKNLETEDEEIRRIQE 349 (521)
T ss_pred HHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHH-HHHHHHHHHHhcccchHHHHHHHHH
Confidence 34554444556788888889999999888888888877777776643110 000 0000000000 000 246777
Q ss_pred HHHHHHHHHHHHH-------HHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601 138 LDSELKCRDEEVK-------KLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 205 (270)
Q Consensus 138 le~eL~~~e~Eie-------~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~ 205 (270)
++.+|.+..++|. +|++.++.+-. +-.--..+.++-++-..|+..+..|-..-++-.+|+++.+.++
T Consensus 350 leqdL~a~~eei~~~eel~~~Lrsele~lp~-dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 350 LEQDLEAVDEEIESNEELAEKLRSELEKLPD-DVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776 33333322211 1112346667777777777777777777777777777744433
No 153
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.64 E-value=3.2 Score=39.97 Aligned_cols=54 Identities=15% Similarity=0.457 Sum_probs=29.2
Q ss_pred ccccccccchhHHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 52 RVADSANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIEL 111 (270)
Q Consensus 52 ~~~ss~n~~~~E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~El 111 (270)
..+|.++...|..|+.-.- ++|+-. ..+..+.|..-|+..+.-...+...+.+.
T Consensus 186 i~es~vd~~eWklEvERV~---PqLKv~---~~~d~kDWR~hleqm~~~~~~I~~~~~~~ 239 (359)
T PF10498_consen 186 IIESKVDPAEWKLEVERVL---PQLKVT---IRADAKDWRSHLEQMKQHKKSIESALPET 239 (359)
T ss_pred cccccCCHHHHHHHHHHHh---hhheee---ccCCcchHHHHHHHHHHHHHHHHHhhhHH
Confidence 6678888899988866211 111111 11112677766666665555555544443
No 154
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=93.64 E-value=0.76 Score=33.23 Aligned_cols=51 Identities=25% Similarity=0.444 Sum_probs=23.8
Q ss_pred HHHHhhhhHH---HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy5601 183 LDSELKCRDE---EVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLL 233 (270)
Q Consensus 183 lE~~l~~~d~---el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~ 233 (270)
|+++|+.++. +|+..+...-.+..++++++.+|.+|...|..|+.++++++
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455554442 33333333333444555555555555555555555555443
No 155
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.62 E-value=4.8 Score=35.49 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=27.6
Q ss_pred HhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 66 LANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIEL 111 (270)
Q Consensus 66 l~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~El 111 (270)
+.++...-.++..++....++....+.++..+......+..+....
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556666666666666666666666666666665443
No 156
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.44 E-value=0.078 Score=55.14 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy5601 68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDE 147 (270)
Q Consensus 68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~ 147 (270)
.|+..+.-|+.-+....+.+...+..+..+..+...+...+..++. ....+..-+..|+.++.=...
T Consensus 347 ~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~-------------~~~~~~~~~~RLerq~~L~~k 413 (722)
T PF05557_consen 347 QLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEA-------------SLEALKKLIRRLERQKALATK 413 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555444443 112222233344444444555
Q ss_pred HHHHHHHhhHHhhhh
Q psy5601 148 EVKKLTNAKHAVEDK 162 (270)
Q Consensus 148 Eie~L~~qi~~LE~~ 162 (270)
|++-||+++......
T Consensus 414 E~d~LR~~L~syd~e 428 (722)
T PF05557_consen 414 ERDYLRAQLKSYDKE 428 (722)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHhhhh
Confidence 666666666555443
No 157
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.44 E-value=11 Score=39.20 Aligned_cols=160 Identities=18% Similarity=0.258 Sum_probs=73.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 82 ESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 82 Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
..+.+|...+.+|..-+-.|..|......+.- .-..|-.+...+..++..+..++.....--.++-++|+.|+.
T Consensus 468 ~yskQVeeLKtELE~EkLKN~ELt~~~nkLsl------Ekk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee 541 (786)
T PF05483_consen 468 HYSKQVEELKTELEQEKLKNTELTVNCNKLSL------EKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEE 541 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554444432 233333444455555555555555544445555556666654
Q ss_pred hhhhhHHHHHHHHHHHHhhH----HHHH---------------------HhhhhHHHHHHHHHhhHHHHHHHHHHhHHHH
Q psy5601 162 KCKAAVELRKELTSVRSKNE----TLDS---------------------ELKCRDEEVKKLTNAKHAVEDKCKLLSQENA 216 (270)
Q Consensus 162 ~~~eipel~~e~~~L~~~l~----~lE~---------------------~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~ 216 (270)
.. ..|+.++.+++.++. +++. .+.-.+..++.|+.+++.-...++.+...|.
T Consensus 542 ~~---~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk 618 (786)
T PF05483_consen 542 TN---TQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENK 618 (786)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 31 112233333332222 2222 2222233344445545544455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 217 ELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 217 ~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
.|..++..--.++....-.+..++.|+..+....
T Consensus 619 ~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~ 652 (786)
T PF05483_consen 619 ALKKKITAESKQSNVYEIKVNKLQEELENLKKKH 652 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5555544444444444444444444544444433
No 158
>KOG1853|consensus
Probab=93.41 E-value=6.4 Score=36.35 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=16.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
+.+.+++.+...++.+..+|+-.++.+..
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Ke 80 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKE 80 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666555544443
No 159
>KOG4673|consensus
Probab=93.28 E-value=12 Score=39.10 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=65.5
Q ss_pred HHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601 127 ELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 205 (270)
Q Consensus 127 e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~ 205 (270)
-+.+..++|..++..+++.-.|-+.|+.++..|... -..+|. +.|..+|+-|+.|+.+.+.|+
T Consensus 403 l~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~----------------DeLaEkdE~I~~lm~EGEkLS 466 (961)
T KOG4673|consen 403 LREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK----------------DELAEKDEIINQLMAEGEKLS 466 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh----------------HHHHHHHHHHHHHHHHHHHhH
Confidence 344555677777777777767777777766544432 111111 355667777788877777666
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5601 206 DKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRV 254 (270)
Q Consensus 206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki 254 (270)
.+.=.-..-+..|.+++++-+.-++.+-.....+..|...|+..+++|-
T Consensus 467 K~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Ke 515 (961)
T KOG4673|consen 467 KKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKE 515 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHH
Confidence 6555444555555555555555555555555555555555555555553
No 160
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.26 E-value=1.4 Score=32.46 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601 169 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL 232 (270)
Q Consensus 169 l~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~ 232 (270)
|...+..|+..++.+...+..-+.++..|..+.+.....+..+-..+..|...+..|..+|++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666667777777777777777777766666666666666666666666665555443
No 161
>PRK10869 recombination and repair protein; Provisional
Probab=93.25 E-value=11 Score=38.39 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhh
Q psy5601 83 STANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVR 132 (270)
Q Consensus 83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~ 132 (270)
.......|...-.....+.+-|+-++.|++...-.|.+.++|+.+...|.
T Consensus 169 ~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~ 218 (553)
T PRK10869 169 SCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLA 218 (553)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 33444444444455555667788888888887777777777777766554
No 162
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.18 E-value=5.8 Score=35.94 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=34.0
Q ss_pred HhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy5601 186 ELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAE 256 (270)
Q Consensus 186 ~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~e 256 (270)
-|.+...+++.|..+.....+.+..+...+..+|.-|..++.+....+.....+..++..|++..|....+
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444555555555555555555555544444444444444444444433
No 163
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.18 E-value=2.4 Score=37.68 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
+++|-.|+.++-.++..+...+..+..+..-+..-..+++....++....+...-+..++..++.++..++....
T Consensus 30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 30 DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELA 104 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 556666666666666666555555555544444333334444444444444443344455555555554444444
No 164
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.17 E-value=10 Score=38.03 Aligned_cols=176 Identities=14% Similarity=0.213 Sum_probs=90.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH----HHHHhh
Q psy5601 81 QESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVK----KLTNAK 156 (270)
Q Consensus 81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie----~L~~qi 156 (270)
...-...-+++..+..+.....-+...+..+. ...++.....-+.......++++..|..-.. .-.+.|
T Consensus 183 ~~fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~-------~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI 255 (511)
T PF09787_consen 183 VEFLKRTLKKEIERQELEERPKALRHYIEYLR-------ESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLI 255 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 33333344444444444444443333333333 2333334444455555555555555552211 123445
Q ss_pred HHhhhhhhh-----------hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601 157 HAVEDKCKA-----------AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLV 225 (270)
Q Consensus 157 ~~LE~~~~e-----------ipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~L 225 (270)
..|...|.. .|.++.+.+.+++.+..++..|.....++.++..+... +.+........+...+...
T Consensus 256 ~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~---~~~~~~~~~~~~~~~~~~~ 332 (511)
T PF09787_consen 256 ESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG---EQESFREQPQELSQQLEPE 332 (511)
T ss_pred HHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHH
Confidence 555553222 79999999999999999999998888888877665222 2222222222222222222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHH
Q psy5601 226 ---QAQLDTLLASQDAQRRIIDTLN----HQLAGRVAELATIHREINT 266 (270)
Q Consensus 226 ---E~~Lee~~~~~~~~~~El~~l~----e~ld~ki~eL~el~~~l~~ 266 (270)
+.++.-......++..++.... -.+..++.++.-++..|+.
T Consensus 333 ~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~ 380 (511)
T PF09787_consen 333 LTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSA 380 (511)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333 3344456666666666654
No 165
>KOG0963|consensus
Probab=93.17 E-value=12 Score=38.57 Aligned_cols=26 Identities=35% Similarity=0.618 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 88 EEWKKQLQAYKEENQKLKTKYIELEA 113 (270)
Q Consensus 88 ~~wk~qL~~l~een~rL~~~i~Ele~ 113 (270)
..|.....-|++.+..+..++..++.
T Consensus 178 q~~~e~e~~L~~~~~~~~~q~~~le~ 203 (629)
T KOG0963|consen 178 QEWAEREAGLKDEEQNLQEQLEELEK 203 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554
No 166
>KOG4360|consensus
Probab=93.15 E-value=9.9 Score=38.30 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHH---------HHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601 135 NETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELR---------KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 205 (270)
Q Consensus 135 ~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~---------~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~ 205 (270)
.+.|...|...++|+..|+.++--|..+ +-++... .+....+..+..+-..|..+-.+++.++.++-.|.
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~E-t~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLl 239 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTE-TLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLL 239 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777777777766544332 1222222 22233333344444444445555555555555566
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 206 DKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
..+.++..+...+-..++.+-.-|.....+++.+..|++.+.++-..-...+++...+|..|
T Consensus 240 sql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 240 SQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777777788888888888999999999999999999999999999999988888665
No 167
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.13 E-value=5 Score=34.31 Aligned_cols=126 Identities=19% Similarity=0.255 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q psy5601 84 TANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKC 163 (270)
Q Consensus 84 ~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~ 163 (270)
.+.++...-.+-.++....++..++...+.-|..... ....++.-....+...|.+...|+.+|+..+..-=
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~-----iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v--- 76 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL-----IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTV--- 76 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3456777777778888888888888877765443322 23566666777777777778888888777662111
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy5601 164 KAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE 217 (270)
Q Consensus 164 ~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~ 217 (270)
-...-.++....+..++..+...|.+.+..+..++.++..+...+..+...+..
T Consensus 77 ~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 77 QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223344444444444444444444444444444443333333333333333
No 168
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.91 E-value=3.4 Score=39.02 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=0.0
Q ss_pred hhchHHHHHHHHHHHHHHHHHH
Q psy5601 132 RSKNETLDSELKCRDEEVKKLT 153 (270)
Q Consensus 132 ~~~~eele~eL~~~e~Eie~L~ 153 (270)
...++....+.+.|..=+..|+
T Consensus 15 ~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 15 DKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 169
>KOG4302|consensus
Probab=92.89 E-value=5 Score=41.61 Aligned_cols=141 Identities=16% Similarity=0.133 Sum_probs=98.9
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhh----hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhh
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCK----AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK 201 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~----eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~ 201 (270)
......+.....|...|..++.|+..|-..+.+.-..+. ...-|..++..|.--++.+-.+....-.++.++..++
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qi 133 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQI 133 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677777777777777777777755444322 2235888999999999999888888888888888887
Q ss_pred HHHHHHHHHH--------------h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHH
Q psy5601 202 HAVEDKCKLL--------------S-QENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL-ATIHREIN 265 (270)
Q Consensus 202 e~l~~~~e~~--------------~-~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL-~el~~~l~ 265 (270)
+.+...+-.- . .+..++..++..|+.+-..-.+.+..+..++..+.+.|+-..... +++|+.|.
T Consensus 134 e~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~ 213 (660)
T KOG4302|consen 134 EKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLV 213 (660)
T ss_pred HHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhh
Confidence 7766655433 1 344447777777777777777777778888888888887766644 37777765
Q ss_pred H
Q psy5601 266 T 266 (270)
Q Consensus 266 ~ 266 (270)
.
T Consensus 214 ~ 214 (660)
T KOG4302|consen 214 D 214 (660)
T ss_pred h
Confidence 4
No 170
>PRK10698 phage shock protein PspA; Provisional
Probab=92.88 E-value=6.8 Score=35.14 Aligned_cols=93 Identities=12% Similarity=0.127 Sum_probs=50.7
Q ss_pred hhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHH
Q psy5601 67 ANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRD 146 (270)
Q Consensus 67 ~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e 146 (270)
+.+++.-..++.++...-+.-...+.++..+....+....+-.-.=..|.. .--.+--.++......+..++.++....
T Consensus 34 ~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~E-dLAr~AL~~K~~~~~~~~~l~~~~~~~~ 112 (222)
T PRK10698 34 QEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKE-DLARAALIEKQKLTDLIATLEHEVTLVD 112 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555667777777777888888888888777776664433222222 1222222233334445555555555555
Q ss_pred HHHHHHHHhhHHhh
Q psy5601 147 EEVKKLTNAKHAVE 160 (270)
Q Consensus 147 ~Eie~L~~qi~~LE 160 (270)
.-+..|+.++..|+
T Consensus 113 ~~~~~L~~~l~~L~ 126 (222)
T PRK10698 113 ETLARMKKEIGELE 126 (222)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554444
No 171
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=92.83 E-value=7.8 Score=35.75 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=72.7
Q ss_pred hhhhhcchhhhhhhHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHhhccchhHHHHHHHHHhhhhhchHHHHHH
Q psy5601 67 ANLKSNNLRLTSALQESTAN----VEEWKKQLQAYKEENQKLKTKYIE-LEATKGVSEAAVELRKELTSVRSKNETLDSE 141 (270)
Q Consensus 67 ~~Lk~~n~rl~~al~Es~a~----v~~wk~qL~~l~een~rL~~~i~E-le~~~~~~~~~~ele~e~~~l~~~~eele~e 141 (270)
..|...|..|..+.++.... |...=.+-+.|..-..-|...-.. +.. ...+|.+-.+.....|..|+.+
T Consensus 16 ~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~------ak~eLqe~eek~e~~l~~Lq~q 89 (258)
T PF15397_consen 16 DFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQ------AKAELQEWEEKEESKLSKLQQQ 89 (258)
T ss_pred HHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHH------HHHHHHHHHHHHHhHHHHHHHH
Confidence 36788888888888654443 444333333333333222211110 010 1222223333334556666666
Q ss_pred HHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH-hhHHHHHHHHHHhHH
Q psy5601 142 LKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN-AKHAVEDKCKLLSQE 214 (270)
Q Consensus 142 L~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~-e~e~l~~~~e~~~~r 214 (270)
+...+..|...+.++.-|-.= +.+.|.-.=+|..|...|+.+-..-.+--.+++.+.. ....++.+++....+
T Consensus 90 l~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~ 164 (258)
T PF15397_consen 90 LEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEE 164 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655 6677776667777777777665544444344444322 244444444443333
No 172
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.74 E-value=2.3 Score=37.90 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=11.9
Q ss_pred hhchHHHHHHHHHHHHHHHHHHH
Q psy5601 132 RSKNETLDSELKCRDEEVKKLTN 154 (270)
Q Consensus 132 ~~~~eele~eL~~~e~Eie~L~~ 154 (270)
...+..++.++...+.++..++.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555544443
No 173
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=92.70 E-value=6.9 Score=34.79 Aligned_cols=43 Identities=7% Similarity=0.148 Sum_probs=26.1
Q ss_pred hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIE 110 (270)
Q Consensus 68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~E 110 (270)
++++.=...+.+|...-+.-...+.++..+......+..+..-
T Consensus 35 em~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~ 77 (219)
T TIGR02977 35 EMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAEL 77 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455666666666667777777777776666665543
No 174
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.67 E-value=7.1 Score=34.85 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 85 ANVEEWKKQLQAYKEENQKLKTKYIELEA 113 (270)
Q Consensus 85 a~v~~wk~qL~~l~een~rL~~~i~Ele~ 113 (270)
..+..|...++.+...|..+..-|.+.+.
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek 51 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEK 51 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566666666666666666666666554
No 175
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=92.67 E-value=13 Score=37.74 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 190 RDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 190 ~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e 248 (270)
.+.+|..+....+++...++.-...-..+...+..++..|...+..+..+...|..|..
T Consensus 352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrk 410 (570)
T COG4477 352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRK 410 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444455445555555555444444556666666666666666666666666666544
No 176
>PF13514 AAA_27: AAA domain
Probab=92.66 E-value=19 Score=39.61 Aligned_cols=105 Identities=21% Similarity=0.333 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------h-hHHHHHH----------HHHhhhhhchHHHHHHHHHH
Q psy5601 83 STANVEEWKKQLQAYKEENQKLKTKYIELEATKGV------S-EAAVELR----------KELTSVRSKNETLDSELKCR 145 (270)
Q Consensus 83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~------~-~~~~ele----------~e~~~l~~~~eele~eL~~~ 145 (270)
....+..+..+++.+......+...+..+-...+. + ..+..|. .....+...++.++.++...
T Consensus 741 ~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~ 820 (1111)
T PF13514_consen 741 ALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQA 820 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666666665555332221 1 1222222 22233344455555555555
Q ss_pred HHHHHHHHHhhHHhhhh--hhhhHH------HHHHHHHHHHhhHHHHHHh
Q psy5601 146 DEEVKKLTNAKHAVEDK--CKAAVE------LRKELTSVRSKNETLDSEL 187 (270)
Q Consensus 146 e~Eie~L~~qi~~LE~~--~~eipe------l~~e~~~L~~~l~~lE~~l 187 (270)
...+..++.++..|-.. +..... ...+...+..++..++..+
T Consensus 821 ~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l 870 (1111)
T PF13514_consen 821 EEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQL 870 (1111)
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555433 111112 2234455555555555555
No 177
>KOG4593|consensus
Probab=92.60 E-value=15 Score=38.32 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=38.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHH
Q psy5601 81 QESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKC 144 (270)
Q Consensus 81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~ 144 (270)
.+....|.-|+.+++.|+..+-++..-+.... -++-++..+...+..|+.....
T Consensus 271 re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~----------~LELeN~~l~tkL~rwE~~~~~ 324 (716)
T KOG4593|consen 271 RENRETVGLLQEELEGLQSKLGRLEKLQSTLL----------GLELENEDLLTKLQRWERADQE 324 (716)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHhhh
Confidence 35667788888888888888777766654433 2446777888888888877665
No 178
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.55 E-value=14 Score=38.02 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=14.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 81 QESTANVEEWKKQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele 112 (270)
.+....+.....++..++.+..++..++.++.
T Consensus 219 ~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~ 250 (650)
T TIGR03185 219 KEQSEKYEDLAQEIAHLRNELEEAQRSLESLE 250 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443
No 179
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.48 E-value=4.5 Score=36.62 Aligned_cols=49 Identities=12% Similarity=0.283 Sum_probs=28.2
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHH
Q psy5601 130 SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRS 178 (270)
Q Consensus 130 ~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~ 178 (270)
.+...+..++..+...+.++..|..++..++.- ..-.|-+...++.|..
T Consensus 67 ~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 67 NLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456666666666677777777777666554 3334555555554444
No 180
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.36 E-value=9.2 Score=35.42 Aligned_cols=66 Identities=12% Similarity=0.284 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601 87 VEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA 158 (270)
Q Consensus 87 v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~ 158 (270)
+..-...|..+..+-..+...|..+-. -+.++-....++..+|++++..|..++.+|..++..|.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~------qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDN------QIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777777777776 556666777777777777777777777777776666643
No 181
>KOG4809|consensus
Probab=92.23 E-value=13 Score=37.84 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHH
Q psy5601 167 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQE 214 (270)
Q Consensus 167 pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r 214 (270)
--+++.+++|...+..+.++|.+.+--|..-+.+|-.+..++..+-+.
T Consensus 362 ~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 362 IDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335555566666666555555555544444444444444444444443
No 182
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=92.12 E-value=8.6 Score=34.52 Aligned_cols=124 Identities=18% Similarity=0.237 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhh---------H
Q psy5601 121 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCR---------D 191 (270)
Q Consensus 121 ~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~---------d 191 (270)
+.+|+.......+.+..|..++..+...+..+.... .....++...+..+..+...+... .
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p----------~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~ 149 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRP----------ERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSE 149 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH----------HHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhH
Confidence 445555555555555555555555544444433333 223344455555555555555442 2
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5601 192 EEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRV 254 (270)
Q Consensus 192 ~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki 254 (270)
.....|..+...+..++.-+.....+.-.+..-+..+.+-+..+...+...+..|.+.+..+.
T Consensus 150 a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 150 AQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333444444444444444444444444444444444444444444444444443
No 183
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.07 E-value=5.3 Score=32.03 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 204 VEDKCKLLSQENAELQAAISLVQAQLDTLLA 234 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~ 234 (270)
|.........++.+++.+|.++...|+.-+.
T Consensus 49 L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ 79 (107)
T PF09304_consen 49 LQAQNASRNQRIAELQAKIDEARRNLEDEKQ 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333
No 184
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.04 E-value=3.9 Score=30.43 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=29.0
Q ss_pred HHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 181 ETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA 251 (270)
Q Consensus 181 ~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld 251 (270)
+.||.++...-..|.-|+.+++.+.. ++..+...+..|..+...++..+......+..+.+.++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke-------~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKE-------KNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444444444444443333 33334444444444444455555555555555544443
No 185
>KOG0249|consensus
Probab=91.97 E-value=18 Score=37.96 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=18.7
Q ss_pred hhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 70 KSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKY 108 (270)
Q Consensus 70 k~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i 108 (270)
.+-|++|-.+|..-.+.|...+.....+++..+.+...+
T Consensus 90 ~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l 128 (916)
T KOG0249|consen 90 HDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKL 128 (916)
T ss_pred ccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhh
Confidence 334555555555555555554444444444444443333
No 186
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.92 E-value=20 Score=38.40 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHhhHHH
Q psy5601 165 AAVELRKELTSVRSKNETL 183 (270)
Q Consensus 165 eipel~~e~~~L~~~l~~l 183 (270)
.++.+...+..+...+..+
T Consensus 330 ~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 330 RLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 187
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.85 E-value=4.1 Score=30.30 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=29.0
Q ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5601 196 KLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL 257 (270)
Q Consensus 196 ~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL 257 (270)
.|...+..+-+.|..+..++..+..++..|...-..++..-..++.+.....+.+++.+..|
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444444444444444444444444444444444444444433
No 188
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.82 E-value=9.6 Score=34.46 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=8.9
Q ss_pred HHHhhhhhchHHHHHHHHH
Q psy5601 126 KELTSVRSKNETLDSELKC 144 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~ 144 (270)
.....+....+.|..++..
T Consensus 27 ~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 27 SELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444555554443
No 189
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.74 E-value=14 Score=36.32 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy5601 89 EWKKQLQAYKEEN 101 (270)
Q Consensus 89 ~wk~qL~~l~een 101 (270)
+|..+|+.....+
T Consensus 42 q~q~ei~~~~~~i 54 (420)
T COG4942 42 QIQKEIAALEKKI 54 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 190
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=91.51 E-value=18 Score=36.86 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy5601 167 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE 217 (270)
Q Consensus 167 pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~ 217 (270)
..+..++..|......+...+.+...--..+......+...+..++....+
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~ 397 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEE 397 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554444444444333333333333333333333333333
No 191
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.48 E-value=0.98 Score=38.43 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q psy5601 142 LKCRDEEVKKLTN 154 (270)
Q Consensus 142 L~~~e~Eie~L~~ 154 (270)
|..+..++..|..
T Consensus 118 i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 118 IEELEEEIEELEE 130 (169)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 192
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.46 E-value=20 Score=37.43 Aligned_cols=7 Identities=43% Similarity=0.729 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy5601 137 TLDSELK 143 (270)
Q Consensus 137 ele~eL~ 143 (270)
++..++.
T Consensus 241 ~l~~ql~ 247 (754)
T TIGR01005 241 ELNTELS 247 (754)
T ss_pred HHHHHHH
Confidence 3333333
No 193
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.34 E-value=6.5 Score=31.55 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhH
Q psy5601 169 LRKELTSVRSKNETLDSELKCRD 191 (270)
Q Consensus 169 l~~e~~~L~~~l~~lE~~l~~~d 191 (270)
|..+.+++...+.+|++.+.+.-
T Consensus 49 L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 49 LQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 194
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=91.33 E-value=11 Score=36.83 Aligned_cols=42 Identities=5% Similarity=-0.041 Sum_probs=25.8
Q ss_pred HhhHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 199 NAKHAVEDKCKLLSQENAE-LQAAISLVQAQLDTLLASQDAQR 240 (270)
Q Consensus 199 ~e~e~l~~~~e~~~~r~~~-lE~~i~~LE~~Lee~~~~~~~~~ 240 (270)
.++..|.+.+...+.|.+= ...+.+++..-|+..+.+...++
T Consensus 276 ~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455566666555555554 56666667766777666666555
No 195
>PF13514 AAA_27: AAA domain
Probab=91.31 E-value=26 Score=38.47 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=21.1
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 76 LTSALQESTANVEEWKKQLQAYKEENQKLKTKYI 109 (270)
Q Consensus 76 l~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~ 109 (270)
+...+......+..|...+..++...........
T Consensus 678 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 711 (1111)
T PF13514_consen 678 LEEELQQLEQELEEAEAELQEAQEALEEWQEEWQ 711 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666677677776666666666555
No 196
>KOG0962|consensus
Probab=91.30 E-value=28 Score=38.84 Aligned_cols=89 Identities=16% Similarity=0.246 Sum_probs=42.6
Q ss_pred HhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601 82 ESTANVEEWKKQLQA---YKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA 158 (270)
Q Consensus 82 Es~a~v~~wk~qL~~---l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~ 158 (270)
+....|...++.|.- +++.-..++..|+.... ...+-+.++++++.++......|+.++.-+.+
T Consensus 196 d~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~-------------ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~e 262 (1294)
T KOG0962|consen 196 DQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQR-------------KIEKSKEEVSELENELGPIEAKIEEIEKSLKE 262 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344445555554443 34444445555555443 22333345555555555555555555555555
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhHHH
Q psy5601 159 VEDKCKAAVELRKELTSVRSKNETL 183 (270)
Q Consensus 159 LE~~~~eipel~~e~~~L~~~l~~l 183 (270)
++....++..+..+...+...+.++
T Consensus 263 l~k~~~~~~~l~~e~~~l~~~~~~l 287 (1294)
T KOG0962|consen 263 LEKLLKQVKLLDSEHKNLKKQISRL 287 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544334444444444444444433
No 197
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.24 E-value=1.4 Score=37.43 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=15.5
Q ss_pred HhhhhHHHHHHHHHh--hHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601 186 ELKCRDEEVKKLTNA--KHAVEDKCKLLSQENAELQAAISLV 225 (270)
Q Consensus 186 ~l~~~d~el~~L~~e--~e~l~~~~e~~~~r~~~lE~~i~~L 225 (270)
.+..+..++..|... .+++...+..+..++..++.++..|
T Consensus 94 ~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 94 EVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444333 2334444444443333333333333
No 198
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.08 E-value=8 Score=32.13 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=32.6
Q ss_pred HHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 181 ETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQ 249 (270)
Q Consensus 181 ~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ 249 (270)
+.+...+..++.++..|...++.+..++..++.++..++.+...+...+..+.......+.++..++..
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444444444433
No 199
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=91.07 E-value=0.62 Score=44.90 Aligned_cols=45 Identities=18% Similarity=0.325 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhH
Q psy5601 169 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQ 213 (270)
Q Consensus 169 l~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~ 213 (270)
+..+++.++++|..+|.++......+..+...+..+.+.+.++++
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555554444444444334333333333333
No 200
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.00 E-value=23 Score=37.28 Aligned_cols=30 Identities=10% Similarity=0.293 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601 235 SQDAQRRIIDTLNHQLAGRVAELATIHREI 264 (270)
Q Consensus 235 ~~~~~~~El~~l~e~ld~ki~eL~el~~~l 264 (270)
..+.++.-|+..-+.++..+.++..++..+
T Consensus 686 Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 686 QKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666777777777777887777776654
No 201
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=90.95 E-value=9 Score=35.77 Aligned_cols=85 Identities=27% Similarity=0.385 Sum_probs=50.9
Q ss_pred chhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHH-----HHH
Q psy5601 73 NLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKC-----RDE 147 (270)
Q Consensus 73 n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~-----~e~ 147 (270)
+..--++||+-...|..++..| ++...+|+.+ + .+|++|+.+|.+ +++
T Consensus 56 PEQYLTPLQQKEV~iRHLkakL---kes~~~l~dR----e--------------------tEI~eLksQL~RMrEDWIEE 108 (305)
T PF15290_consen 56 PEQYLTPLQQKEVCIRHLKAKL---KESENRLHDR----E--------------------TEIDELKSQLARMREDWIEE 108 (305)
T ss_pred HHHhcChHHHHHHHHHHHHHHH---HHHHHHHHhh----H--------------------HHHHHHHHHHHHHHHHHHHH
Confidence 3345578999888998887544 4444444332 2 356677777776 466
Q ss_pred HHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHH
Q psy5601 148 EVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDE 192 (270)
Q Consensus 148 Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~ 192 (270)
|..+..+|+ ..-+-+.+|.+|++-|+-.-+-|.++|.
T Consensus 109 ECHRVEAQL--------ALKEARkEIkQLkQvieTmrssL~ekDk 145 (305)
T PF15290_consen 109 ECHRVEAQL--------ALKEARKEIKQLKQVIETMRSSLAEKDK 145 (305)
T ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 777777777 2233345555555555555555555553
No 202
>KOG0612|consensus
Probab=90.94 E-value=30 Score=38.42 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHhh
Q psy5601 17 RANTVSLVQAQLD 29 (270)
Q Consensus 17 ~an~~~~~~~~l~ 29 (270)
.-+++|-|++.|.
T Consensus 432 ~~~~~~~le~~l~ 444 (1317)
T KOG0612|consen 432 IHKTLQILEQSLV 444 (1317)
T ss_pred cccchhhcccchh
Confidence 4455555555444
No 203
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=90.90 E-value=0.51 Score=44.76 Aligned_cols=8 Identities=25% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q psy5601 98 KEENQKLK 105 (270)
Q Consensus 98 ~een~rL~ 105 (270)
.++...|+
T Consensus 34 ~eRLsaLE 41 (326)
T PF04582_consen 34 RERLSALE 41 (326)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 204
>PRK11281 hypothetical protein; Provisional
Probab=90.86 E-value=30 Score=38.31 Aligned_cols=21 Identities=19% Similarity=0.407 Sum_probs=9.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q psy5601 211 LSQENAELQAAISLVQAQLDT 231 (270)
Q Consensus 211 ~~~r~~~lE~~i~~LE~~Lee 231 (270)
+..+.+.++..+..|+..+..
T Consensus 232 ~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 232 LTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444
No 205
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=90.85 E-value=5.3 Score=37.24 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=12.6
Q ss_pred HHHHHHhhhhHHHHHHHHHhhHH
Q psy5601 181 ETLDSELKCRDEEVKKLTNAKHA 203 (270)
Q Consensus 181 ~~lE~~l~~~d~el~~L~~e~e~ 203 (270)
.+.+.++.+.|.||.+|+.++..
T Consensus 78 kes~~~l~dRetEI~eLksQL~R 100 (305)
T PF15290_consen 78 KESENRLHDRETEIDELKSQLAR 100 (305)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444555566666666666433
No 206
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.79 E-value=21 Score=36.36 Aligned_cols=173 Identities=13% Similarity=0.233 Sum_probs=93.0
Q ss_pred HHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601 81 QESTANVEEWKKQLQAYK-EENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAV 159 (270)
Q Consensus 81 ~Es~a~v~~wk~qL~~l~-een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~L 159 (270)
.++.....+|+.....+. .....+...+-+.+....... ....+..+..++..|..++..+..+...+..|
T Consensus 56 Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~r--------f~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L 127 (560)
T PF06160_consen 56 GQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYR--------FKKAKQAIKEIEEQLDEIEEDIKEILDELDEL 127 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888877 567777777766665332211 12234566666677777777777777666655
Q ss_pred hhh----hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHH
Q psy5601 160 EDK----CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE-----LQAAISLVQAQLD 230 (270)
Q Consensus 160 E~~----~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~-----lE~~i~~LE~~Le 230 (270)
-.. ...+..+.+....++..+-.--...+..-.. |...+..+.........-..+ +..-+..++..+.
T Consensus 128 ~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~---Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~ 204 (560)
T PF06160_consen 128 LESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEE---LEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETD 204 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHH---HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 543 4445556666555555554332222222111 111222222222222221111 4555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601 231 TLLASQDAQRRIIDTLNHQLAGRVAELATIHREI 264 (270)
Q Consensus 231 e~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l 264 (270)
.+....+.+=.-+..+...+-..+.+|..-.+.|
T Consensus 205 ~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m 238 (560)
T PF06160_consen 205 ELEEIMEDIPKLYKELQKEFPDQLEELKEGYREM 238 (560)
T ss_pred HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6666666666666666666666666655554444
No 207
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.78 E-value=3.4 Score=37.80 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=40.4
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601 163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLV 225 (270)
Q Consensus 163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~L 225 (270)
.+-.|.++.|.+..+.+..+||.+++.....+..|+.+++. +...|-.|..+|+=|
T Consensus 78 ~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~-------L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 78 SSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVES-------LRADNVKLYEKIRYL 133 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34568899999999999999998888877777666665554 444555555555544
No 208
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.73 E-value=3.2 Score=30.88 Aligned_cols=64 Identities=14% Similarity=0.263 Sum_probs=49.9
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy5601 76 LTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCR 145 (270)
Q Consensus 76 l~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~ 145 (270)
|-...+.+-.-|--+..+++.+++.|..|....+++.. ..+.|+.++.+|+..-.-|...|+++
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~------~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH------QREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667788889999999999999998887665 56777788888888888887777664
No 209
>KOG0243|consensus
Probab=90.70 E-value=14 Score=40.22 Aligned_cols=96 Identities=23% Similarity=0.264 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHH-----HHHHHHHHhhHHHHHHhhhhHHHHHHHHHh-------hHHHHH
Q psy5601 140 SELKCRDEEVKKLTNAKHAVEDK-CKAAVELR-----KELTSVRSKNETLDSELKCRDEEVKKLTNA-------KHAVED 206 (270)
Q Consensus 140 ~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~-----~e~~~L~~~l~~lE~~l~~~d~el~~L~~e-------~e~l~~ 206 (270)
.-|.++-.||++|+..+..-... +-=||+-+ .+.......|++++..+.+++..|.++... ...+..
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~ 483 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE 483 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34556777788887777544443 22233321 233444444555555555555444444332 233444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 207 KCKLLSQENAELQAAISLVQAQLDTLLAS 235 (270)
Q Consensus 207 ~~e~~~~r~~~lE~~i~~LE~~Lee~~~~ 235 (270)
+.+.+..++..-...+.+++..+..++..
T Consensus 484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444333
No 210
>KOG0963|consensus
Probab=90.62 E-value=23 Score=36.53 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=40.4
Q ss_pred HHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601 122 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 200 (270)
Q Consensus 122 ~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e 200 (270)
..|-.....+...+..++.-+..++.-+.....+...++.. +.+.....+++.-+=.+++..-.++..++.++..|..+
T Consensus 185 ~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~q 264 (629)
T KOG0963|consen 185 AGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQ 264 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555554 44444444444444455555555555555555555443
No 211
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.61 E-value=26 Score=37.14 Aligned_cols=89 Identities=18% Similarity=0.143 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhHHHHHHhh----hhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 169 LRKELTSVRSKNETLDSELK----CRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIID 244 (270)
Q Consensus 169 l~~e~~~L~~~l~~lE~~l~----~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~ 244 (270)
.+++.-.+..-+.+-+..+- .-+-+...++.++++.-..++.+.-+..+.+..+.-|.-.|...-.++.+++.=-+
T Consensus 467 q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR 546 (861)
T PF15254_consen 467 QKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTR 546 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443 22345555666777777777777777777777777777777766666665555555
Q ss_pred HHHHHHhHHHHHH
Q psy5601 245 TLNHQLAGRVAEL 257 (270)
Q Consensus 245 ~l~e~ld~ki~eL 257 (270)
.|..-..+.+.+|
T Consensus 547 ~LQ~Sma~lL~dl 559 (861)
T PF15254_consen 547 TLQNSMAKLLSDL 559 (861)
T ss_pred HHHHHHHHHhhhc
Confidence 5555555544443
No 212
>KOG1937|consensus
Probab=90.38 E-value=20 Score=35.63 Aligned_cols=128 Identities=15% Similarity=0.207 Sum_probs=65.9
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHH----HHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHH
Q psy5601 121 AVELRKELTSVRSKNETLDSELKC----RDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKK 196 (270)
Q Consensus 121 ~~ele~e~~~l~~~~eele~eL~~----~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~ 196 (270)
+..|.-....++.+|..+..+... .....-.|+.+...++.+++++. .+..+...+..+..++...+..-..
T Consensus 295 LaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~----~IqeleqdL~a~~eei~~~eel~~~ 370 (521)
T KOG1937|consen 295 LAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIR----RIQELEQDLEAVDEEIESNEELAEK 370 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 444444445555555555555443 33344445555555554433322 2344444444444444444444445
Q ss_pred HHHhhHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601 197 LTNAKHAVED--KCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAG 252 (270)
Q Consensus 197 L~~e~e~l~~--~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ 252 (270)
|+.+.+.+.. .+-....++.+.-.-|+-.+.++-.....-.+++.+....-+.++.
T Consensus 371 Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 371 LRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555544333 2445566666666666666666666666666666565555555543
No 213
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.15 E-value=3.7 Score=31.19 Aligned_cols=64 Identities=16% Similarity=0.278 Sum_probs=49.5
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy5601 76 LTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCR 145 (270)
Q Consensus 76 l~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~ 145 (270)
|-+..+.+-..|.-+.++++.+++.|..|...+..+.. .-.+|..++.+++..-..|...|..+
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~------~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH------QREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777889999999999999999999888665 44556678888888888887777654
No 214
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=90.12 E-value=7.6 Score=34.58 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=17.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 206 DKCKLLSQENAELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
+.+-.+..|++++|.+|+.|+.+|-++-.-..
T Consensus 129 eel~~a~~K~qemE~RIK~LhaqI~EKDAmIk 160 (205)
T PF12240_consen 129 EELHMANRKCQEMENRIKALHAQIAEKDAMIK 160 (205)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666655544433
No 215
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=89.98 E-value=23 Score=35.72 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHhhc
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGR--------VAELATIHREINTALQ 269 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~k--------i~eL~el~~~l~~~~~ 269 (270)
+...+..+...++.+-...+.+.......+..++.+ +.++..+|++|+++|.
T Consensus 410 ~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLs 469 (531)
T PF15450_consen 410 MEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLS 469 (531)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554444444555555544 4578888899988764
No 216
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=89.94 E-value=2.5 Score=33.10 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=37.0
Q ss_pred HHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhh
Q psy5601 147 EEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK 201 (270)
Q Consensus 147 ~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~ 201 (270)
.+...+.++|..+...+.....+..++..+...|..++..+...+.++..+...+
T Consensus 50 ~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~i 104 (108)
T PF02403_consen 50 AERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSI 104 (108)
T ss_dssp HHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333344444444443456777888888888888888888888888877765544
No 217
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=89.74 E-value=6.8 Score=32.31 Aligned_cols=57 Identities=12% Similarity=0.305 Sum_probs=27.8
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601 176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL 232 (270)
Q Consensus 176 L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~ 232 (270)
|..+|+.+...++...+-....+.++..+...+.............|..|+..|..+
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455555555555555555555555555555443
No 218
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.51 E-value=3.3 Score=30.57 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=11.4
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHH
Q psy5601 129 TSVRSKNETLDSELKCRDEEVKKLTN 154 (270)
Q Consensus 129 ~~l~~~~eele~eL~~~e~Eie~L~~ 154 (270)
..|...++.+...+..++.++..|+.
T Consensus 8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ 33 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHEIENKRLRR 33 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 219
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=89.46 E-value=11 Score=31.14 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=15.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601 192 EEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQ 226 (270)
Q Consensus 192 ~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE 226 (270)
.++..++..++.+..++..+......|+.+|..++
T Consensus 89 ~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 89 DEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444444444443
No 220
>KOG0249|consensus
Probab=89.20 E-value=32 Score=36.23 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHH
Q psy5601 120 AAVELRKELTSVRSKNETLDSELK 143 (270)
Q Consensus 120 ~~~ele~e~~~l~~~~eele~eL~ 143 (270)
.+-.+++.+.++..+|+..+..+.
T Consensus 106 ~lrq~eekn~slqerLelaE~~l~ 129 (916)
T KOG0249|consen 106 DLRQNEEKNRSLQERLELAEPKLQ 129 (916)
T ss_pred hhchhHHhhhhhhHHHHHhhHhhH
Confidence 334444555555555555444443
No 221
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.03 E-value=41 Score=37.23 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q psy5601 121 AVELRKELTSVRSKNETLDSELKCRDEEV 149 (270)
Q Consensus 121 ~~ele~e~~~l~~~~eele~eL~~~e~Ei 149 (270)
..+|+....+..+.+.++..++.......
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34555555555555666666665544444
No 222
>KOG0804|consensus
Probab=88.96 E-value=26 Score=34.85 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=10.6
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHH
Q psy5601 172 ELTSVRSKNETLDSELKCRDEEVKKL 197 (270)
Q Consensus 172 e~~~L~~~l~~lE~~l~~~d~el~~L 197 (270)
+++++......++++-...+..+..+
T Consensus 362 e~~~l~~~~~~~e~~kk~~e~k~~q~ 387 (493)
T KOG0804|consen 362 EADSLKQESSDLEAEKKIVERKLQQL 387 (493)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333333
No 223
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.84 E-value=2.9 Score=37.88 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
..++++..++....|...|.++.+++++
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~ 163 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEA 163 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455445555555555544443
No 224
>KOG0982|consensus
Probab=88.84 E-value=26 Score=34.69 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=40.3
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLA 234 (270)
Q Consensus 163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~ 234 (270)
.+.+|-|+..++.|.....+....|..+--.|...+.......+.+-..+.++.+.+.=|.+|..+|+.++.
T Consensus 317 Rs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~ 388 (502)
T KOG0982|consen 317 RSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRR 388 (502)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666655555555444444444444555555555555555555555443
No 225
>KOG0288|consensus
Probab=88.82 E-value=23 Score=34.90 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=11.3
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 132 RSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 132 ~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
.+++..+...|+.++.-.+.+..|.
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~ 36 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQL 36 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 226
>KOG0804|consensus
Probab=88.63 E-value=14 Score=36.76 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=12.3
Q ss_pred HHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q psy5601 123 ELRKELTSVRSKNETLDSELKCRDEEVKK 151 (270)
Q Consensus 123 ele~e~~~l~~~~eele~eL~~~e~Eie~ 151 (270)
.++....++...+..|..++....++...
T Consensus 379 ~~e~k~~q~q~k~~k~~kel~~~~E~n~~ 407 (493)
T KOG0804|consen 379 IVERKLQQLQTKLKKCQKELKEEREENKK 407 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333
No 227
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=88.62 E-value=5.1 Score=30.01 Aligned_cols=69 Identities=29% Similarity=0.279 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 88 EEWKKQLQAYKEENQKLKTKYIELEATK--GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 88 ~~wk~qL~~l~een~rL~~~i~Ele~~~--~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
+..+.+|..++-+|-.|+-+|--++..- ..|.....+..++.+++..+..+..++..+..-+..+.+.+
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556778888888888888887666532 23556777777777777777777777777766666555544
No 228
>KOG1899|consensus
Probab=88.62 E-value=7.9 Score=39.97 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5601 239 QRRIIDTLNHQLAGRVAELATIHREINT 266 (270)
Q Consensus 239 ~~~El~~l~e~ld~ki~eL~el~~~l~~ 266 (270)
.+.++..|++++..|-++...+|..|+.
T Consensus 236 tk~e~a~L~Eq~~eK~~e~~rl~~~lv~ 263 (861)
T KOG1899|consen 236 TKGEMAPLREQRSEKNDEEMRLLRTLVQ 263 (861)
T ss_pred ccchhhhHHHHHhhhhhHHHHHHHHHHH
Confidence 3457788888999998888888877753
No 229
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.28 E-value=23 Score=33.49 Aligned_cols=124 Identities=20% Similarity=0.239 Sum_probs=57.8
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH
Q psy5601 75 RLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN 154 (270)
Q Consensus 75 rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~ 154 (270)
.|...+......-...+.++..++..+..|...+..+-........-.+.+++..+ -.|=..|+....+-+.|-.
T Consensus 24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is-----N~LlKkl~~l~keKe~L~~ 98 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFIS-----NTLLKKLQQLKKEKETLAL 98 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 34444444444445556666666666666666555544322222222222222110 0111222222222222222
Q ss_pred hhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhh-hHHHHHHHHHhhHHHHH
Q psy5601 155 AKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKC-RDEEVKKLTNAKHAVED 206 (270)
Q Consensus 155 qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~-~d~el~~L~~e~e~l~~ 206 (270)
.+ +.. ..-.+.|...+..|+.+--++|..+.. .+..++.|+..|..+..
T Consensus 99 ~~---e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~ 149 (310)
T PF09755_consen 99 KY---EQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEK 149 (310)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 22 111 233466777777777777777777765 44556666666655543
No 230
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=88.25 E-value=33 Score=35.12 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=37.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhh
Q psy5601 81 QESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVR 132 (270)
Q Consensus 81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~ 132 (270)
..+...+..+...-.....+.+.|+=++.|++.-.-++++.++|..++..|.
T Consensus 167 ~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLs 218 (557)
T COG0497 167 KQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLS 218 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Confidence 3444555566666666677778888899999987778888887877776554
No 231
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.92 E-value=46 Score=36.46 Aligned_cols=17 Identities=6% Similarity=0.192 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhHHHHH
Q psy5601 169 LRKELTSVRSKNETLDS 185 (270)
Q Consensus 169 l~~e~~~L~~~l~~lE~ 185 (270)
+..++..+...+..+..
T Consensus 782 l~~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 782 LEQLKQNLENQRQQAQT 798 (1047)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444443333333
No 232
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=87.75 E-value=6.2 Score=31.44 Aligned_cols=63 Identities=25% Similarity=0.286 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH
Q psy5601 84 TANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKL 152 (270)
Q Consensus 84 ~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L 152 (270)
.+.+..|+.=+=..+..+..|...+...+. .+.-++.++.+|..+-++|...+..++.|+...
T Consensus 11 raQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~------~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 11 RAQNQVLKKAVIEEQAKNAELKEQLKEKEQ------ALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555566777777777777776 677777888888888888888888888888743
No 233
>PF13166 AAA_13: AAA domain
Probab=87.47 E-value=37 Score=34.93 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=37.3
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhHHhhhh---hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHH
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKHAVEDK---CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED 206 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~~---~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~ 206 (270)
....++...+..+...+..+...+..--.. .-.++.+...+..+...+..+...+...+..+..+......+..
T Consensus 322 ~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~ 398 (712)
T PF13166_consen 322 EDKEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKD 398 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655555432111 12223344444555555555555555555555555444444333
No 234
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.40 E-value=31 Score=33.87 Aligned_cols=134 Identities=12% Similarity=0.133 Sum_probs=61.8
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 205 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~ 205 (270)
..+.++.+..+.|-+.-..++.-...|+.++-+|......|..--..+.--..-++..+.++.+...-...+...+....
T Consensus 158 ~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd 237 (499)
T COG4372 158 EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333333333333333333334444444444333333332222222223333333333333333333333343344
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy5601 206 DKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHRE 263 (270)
Q Consensus 206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~ 263 (270)
..+......++.-...|..-+.+|..++..+.-++.++.. ++.--..+.+++.+
T Consensus 238 ~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~----le~yyQ~y~~lr~q 291 (499)
T COG4372 238 AQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQ----LEAYYQAYVRLRQQ 291 (499)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 4444444555556667777777777777777766555544 45555566666544
No 235
>KOG0982|consensus
Probab=87.35 E-value=32 Score=34.06 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601 167 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 205 (270)
Q Consensus 167 pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~ 205 (270)
..|..+++.|+..+.+|-+-++.+.++...+-..++.+.
T Consensus 307 qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 307 QQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 334444555555555554444444444433333333333
No 236
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=87.08 E-value=22 Score=31.76 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh-----------h
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA-----------K 201 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e-----------~ 201 (270)
.++.|+..+.....-++-+.-++..|+-- .-+.+.-.-.+..|..-+..++..+..+..+|.++... +
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L 177 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEEL 177 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 67888888888777777777788777644 23334444555666666666666666666555555443 2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 202 HAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQ 236 (270)
Q Consensus 202 e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~ 236 (270)
..|..+-.....+|-+++..+..|+.++..++...
T Consensus 178 ~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~ 212 (221)
T PF05700_consen 178 RYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKA 212 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444444444444445555555555554444433
No 237
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.94 E-value=44 Score=35.21 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=5.3
Q ss_pred HHHHHhHHHHHHHHH
Q psy5601 207 KCKLLSQENAELQAA 221 (270)
Q Consensus 207 ~~e~~~~r~~~lE~~ 221 (270)
++..+..++..+..+
T Consensus 647 ~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 647 QLQDLKASIEQLKKK 661 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 238
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.90 E-value=7.8 Score=28.83 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHhh
Q psy5601 139 DSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 139 e~eL~~~e~Eie~L~~qi~~LE 160 (270)
...|..+++.|..|...-+.|.
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLS 25 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLS 25 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3344445555544444443333
No 239
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=86.58 E-value=6.5 Score=31.19 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=11.2
Q ss_pred HHHHhhHHHHHHhhhh--HHHHHHHHHhhH
Q psy5601 175 SVRSKNETLDSELKCR--DEEVKKLTNAKH 202 (270)
Q Consensus 175 ~L~~~l~~lE~~l~~~--d~el~~L~~e~e 202 (270)
.+..++..+|.++++. ..+++.|+..+.
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~ 75 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELA 75 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3334444444444443 333444433333
No 240
>PRK11281 hypothetical protein; Provisional
Probab=85.95 E-value=62 Score=35.92 Aligned_cols=123 Identities=10% Similarity=0.029 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhH---
Q psy5601 137 TLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQ--- 213 (270)
Q Consensus 137 ele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~--- 213 (270)
.|.+++..++.++.-++.... ....-..-++.+.+-+..++..++..+..++.-|+.-+....+ ..++.+..
T Consensus 196 ~l~ae~~~l~~~~~~~~~~l~---~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se--~~~~~a~~~~~ 270 (1113)
T PRK11281 196 LLQAEQALLNAQNDLQRKSLE---GNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSE--KTVQEAQSQDE 270 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhh
Confidence 344444444444444433331 1133344567777888888888888888888888875444211 11111111
Q ss_pred ------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601 214 ------E--NAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI 264 (270)
Q Consensus 214 ------r--~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l 264 (270)
. .+..-..+..|=..|...-.+...+..+....+..++......+.++..+
T Consensus 271 ~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 271 AARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 22233445666666666666666666677777777777777777666655
No 241
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=85.76 E-value=26 Score=31.40 Aligned_cols=33 Identities=12% Similarity=0.306 Sum_probs=16.2
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHA 158 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~ 158 (270)
+........++..-..+.+....+..++.++..
T Consensus 106 ~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 106 SQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444445555555555555555555555433
No 242
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=85.62 E-value=21 Score=30.17 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=18.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKHAV 159 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~~L 159 (270)
.+++++-+++.-++.+++.|+.++..|
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l 32 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAAL 32 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777333
No 243
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=85.56 E-value=31 Score=32.06 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=32.4
Q ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5601 197 LTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATI 260 (270)
Q Consensus 197 L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el 260 (270)
+..++..+...+..+...-+.|+.+|+....+|+-.+.+...++.-.=-+.++.++.-.+|..+
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 3344455555555555555556666666555555555555544443333444444444444333
No 244
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=85.38 E-value=22 Score=31.09 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=26.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5601 204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL 257 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL 257 (270)
+-.++++...|+.+|..-+.-|..+|+.+...-+.+..++..+........++|
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL 118 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDEL 118 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555555555555444444433333
No 245
>KOG4809|consensus
Probab=85.27 E-value=47 Score=33.95 Aligned_cols=108 Identities=18% Similarity=0.281 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy5601 83 STANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK 162 (270)
Q Consensus 83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~ 162 (270)
-...|+..+++...+++-...|+..+.+.++ .+.-|.....+|.+....+...|...+.-++.-+..+...+++
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~------sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~q 402 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKES------SLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQ 402 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455777888888888888888887777776 5555667777777766666666555443333333333333332
Q ss_pred ----------hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHH
Q psy5601 163 ----------CKAAVELRKELTSVRSKNETLDSELKCRDEEVKK 196 (270)
Q Consensus 163 ----------~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~ 196 (270)
.--.|+..+++-.|..++...++.+.....+...
T Consensus 403 LkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdr 446 (654)
T KOG4809|consen 403 LKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDR 446 (654)
T ss_pred HHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123666677777777777766666665555444
No 246
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=85.22 E-value=25 Score=30.83 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=29.7
Q ss_pred hhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 74 LRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEA 113 (270)
Q Consensus 74 ~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~ 113 (270)
.-|.-++.+....+.+++..+........+|...+.+...
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~ 65 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEE 65 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888888888887777777777777664
No 247
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=85.11 E-value=68 Score=35.62 Aligned_cols=120 Identities=12% Similarity=0.052 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhh-HHHHHHHHH-------Hh
Q psy5601 145 RDEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK-HAVEDKCKL-------LS 212 (270)
Q Consensus 145 ~e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~-e~l~~~~e~-------~~ 212 (270)
++.|..-+..++..++.. ..-..-.+.+.+-+..++..++..+..+...||..+..- +..-++.+. ..
T Consensus 178 lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~ 257 (1109)
T PRK10929 178 LQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLP 257 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCC
Confidence 344444444444444433 334455667778888888888888888888888765541 111111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601 213 QENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI 264 (270)
Q Consensus 213 ~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l 264 (270)
.-++..-..+..|=..|...-.+...+..+....+..++.....++.++..+
T Consensus 258 ~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 258 KSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333456666677777777777777777777777777777777777665
No 248
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.85 E-value=39 Score=32.66 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHH
Q psy5601 166 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKC 208 (270)
Q Consensus 166 ipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~ 208 (270)
+..+..++..++.++..+-.++...-..+..++.+++.+...+
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666655555555555555554443
No 249
>PLN02939 transferase, transferring glycosyl groups
Probab=84.82 E-value=65 Score=35.20 Aligned_cols=60 Identities=28% Similarity=0.263 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy5601 86 NVEEWKKQLQAYKEENQKLKTKYIELEATKG----VSEAAVELRKELTSVRSKNETLDSELKCR 145 (270)
Q Consensus 86 ~v~~wk~qL~~l~een~rL~~~i~Ele~~~~----~~~~~~ele~e~~~l~~~~eele~eL~~~ 145 (270)
+|.-+-.+|..++++|--|+..|+-+.+... -...+--++.++.-|.+.+.+|+..+..-
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (977)
T PLN02939 220 CVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVA 283 (977)
T ss_pred ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666777777777777766654443111 11234445566666666666666666543
No 250
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=84.66 E-value=0.11 Score=41.04 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.5
Q ss_pred CcccccccccccchhhhhHHHHHH
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVSLV 24 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~~~ 24 (270)
|.|++++.+|.+|+|. +.+|||
T Consensus 64 ~~y~~~~~~Fh~w~~~--~~~~GL 85 (104)
T cd00837 64 LKYTQATPFFHQWEDD--NCVYGL 85 (104)
T ss_pred cEEeecCCeEEEEEcC--CcEEEE
Confidence 6899999999999998 779999
No 251
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=84.31 E-value=26 Score=30.11 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHhh
Q psy5601 164 KAAVELRKELTSVRSKNETLDSELK 188 (270)
Q Consensus 164 ~eipel~~e~~~L~~~l~~lE~~l~ 188 (270)
+.+..++.+.+.|+.+++.+..+++
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555544443
No 252
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=84.18 E-value=0.078 Score=42.26 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.9
Q ss_pred CcccccccccccchhhhhHHHHHH
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVSLV 24 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~~~ 24 (270)
|+|++++..|++|.|.+. +|||
T Consensus 71 ~~Y~~~~~~Fh~f~~~~~--~~GL 92 (111)
T PF00568_consen 71 FVYTKARPFFHQFEDDDC--VYGL 92 (111)
T ss_dssp -EEEEESSSEEEEEETTC--EEEE
T ss_pred CEEEeCCCcEEEEEeCCe--EEEE
Confidence 789999999999999976 9999
No 253
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.73 E-value=24 Score=29.27 Aligned_cols=15 Identities=7% Similarity=0.271 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTL 232 (270)
Q Consensus 218 lE~~i~~LE~~Lee~ 232 (270)
....++-.+.+++.+
T Consensus 131 ~~~e~rkke~E~~kL 145 (151)
T PF11559_consen 131 YEHELRKKEREIEKL 145 (151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 254
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=83.71 E-value=3.7 Score=39.61 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=5.7
Q ss_pred HHHhhHHHHHHhhhhH
Q psy5601 176 VRSKNETLDSELKCRD 191 (270)
Q Consensus 176 L~~~l~~lE~~l~~~d 191 (270)
|..+|..+|.++.+++
T Consensus 142 l~~Ri~e~Eeris~lE 157 (370)
T PF02994_consen 142 LNSRIDELEERISELE 157 (370)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHH
Confidence 3444444443333333
No 255
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=83.25 E-value=45 Score=32.10 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=12.2
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKHAV 159 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~~L 159 (270)
..+..|+.-+...++|...|+-++..+
T Consensus 127 ~~~q~LE~li~~~~EEn~~lqlqL~~l 153 (401)
T PF06785_consen 127 GDIQHLEGLIRHLREENQCLQLQLDAL 153 (401)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344444444444444444444444333
No 256
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=82.94 E-value=42 Score=31.60 Aligned_cols=93 Identities=18% Similarity=0.282 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 168 ELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLN 247 (270)
Q Consensus 168 el~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~ 247 (270)
.|+.++..-.++...+.+.|..-+.-....+.+++.+..++..++..+..+..+-......|-++-........++..
T Consensus 213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~-- 290 (309)
T PF09728_consen 213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEK-- 290 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--
Confidence 455555555666666777777777777777777777777777777777777766666666666666655544444444
Q ss_pred HHHhHHHHHHHHHHHHH
Q psy5601 248 HQLAGRVAELATIHREI 264 (270)
Q Consensus 248 e~ld~ki~eL~el~~~l 264 (270)
+..++.-|..|.+.|
T Consensus 291 --~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 291 --LKKKIEKLEKLCRAL 305 (309)
T ss_pred --HHHHHHHHHHHHHHH
Confidence 344444454444443
No 257
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.38 E-value=20 Score=35.88 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=16.8
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 132 RSKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 132 ~~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
...+.+|+.+|..++.++..++.++..++.
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 99 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKA 99 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666655555544443
No 258
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=82.33 E-value=36 Score=30.37 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhHHH---HHHHHHHHHH
Q psy5601 235 SQDAQRRIIDTLNHQLAGRV---AELATIHREI 264 (270)
Q Consensus 235 ~~~~~~~El~~l~e~ld~ki---~eL~el~~~l 264 (270)
.+...+-.+..|...++.|. .+|+.+.++|
T Consensus 169 ~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 169 SLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433 3455555554
No 259
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.32 E-value=25 Score=35.16 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=36.1
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhH
Q psy5601 79 ALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKH 157 (270)
Q Consensus 79 al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~ 157 (270)
++.+....+..++.++..++++...+..++.=++..+... ...+......-...+.+|..-+..+..++..+..++.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGL--TEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR 148 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555554443311000 0000000000023567777777777777776666663
No 260
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.31 E-value=34 Score=30.05 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=9.6
Q ss_pred CcccccccccccchhhhhHHHH
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVS 22 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~ 22 (270)
+.|+|||.- |...=+-=||
T Consensus 3 ~pF~K~s~~---W~~~E~mevf 21 (190)
T PF05266_consen 3 LPFVKKSPV---WKTIESMEVF 21 (190)
T ss_pred CCcccccch---hHHHHHHHHH
Confidence 357776653 4444444444
No 261
>KOG4005|consensus
Probab=82.17 E-value=16 Score=33.40 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=45.7
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 175 SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 175 ~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
.-+.+++++|..++++..+-..|+.+++.|...-..+-.++.++-..+..+...|.+++...-
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 334566667777777777777777778888887777777777777777777777777766544
No 262
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.01 E-value=54 Score=32.17 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=11.6
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 130 SVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 130 ~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
.+...+..+..++..++.++..++...
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~ 195 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALK 195 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 263
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=82.01 E-value=15 Score=31.17 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH---hhHHHHHHHHHHhHHHH
Q psy5601 165 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN---AKHAVEDKCKLLSQENA 216 (270)
Q Consensus 165 eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~---e~e~l~~~~e~~~~r~~ 216 (270)
.+...+.+++.+...+..+...|...+..|..|+. .+++|..+++.++..+.
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33444555555566666666666666666666666 25556666666665554
No 264
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=81.96 E-value=22 Score=27.73 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHH
Q psy5601 167 VELRKELTSVRSKNETLDSELKCRDEE 193 (270)
Q Consensus 167 pel~~e~~~L~~~l~~lE~~l~~~d~e 193 (270)
|.|..+++.+...+..++..+..+...
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~ 92 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEK 92 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 265
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=81.83 E-value=22 Score=27.45 Aligned_cols=6 Identities=33% Similarity=0.435 Sum_probs=2.1
Q ss_pred HhhhhH
Q psy5601 186 ELKCRD 191 (270)
Q Consensus 186 ~l~~~d 191 (270)
+|+..+
T Consensus 54 eLD~~~ 59 (89)
T PF13747_consen 54 ELDQAE 59 (89)
T ss_pred HHHhHH
Confidence 333333
No 266
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=81.82 E-value=0.16 Score=40.27 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=20.2
Q ss_pred CcccccccccccchhhhhHHHHHH
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVSLV 24 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~~~ 24 (270)
|.|++++..|.+|+| .+.||||
T Consensus 66 ~~y~~~~~~Fh~f~~--~~~~~GL 87 (106)
T smart00461 66 FKYNQATPTFHQWAD--DKCVYGL 87 (106)
T ss_pred CEEeecCCceEEEEe--CCeEEEe
Confidence 678999999999998 7889999
No 267
>KOG0962|consensus
Probab=81.81 E-value=96 Score=34.89 Aligned_cols=68 Identities=24% Similarity=0.258 Sum_probs=32.1
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 200 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e 200 (270)
-++.+-...+....++.+.+..++......-.+|.-...+++.+-..+..++++..+....+..++..
T Consensus 223 l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~ 290 (1294)
T KOG0962|consen 223 LNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREK 290 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444444444333333334444444455555555555555555555544
No 268
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=81.55 E-value=74 Score=33.44 Aligned_cols=86 Identities=22% Similarity=0.269 Sum_probs=50.3
Q ss_pred cchhHHHHhhhhhcchhhhhhhHHhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhh
Q psy5601 59 AKKWEIELANLKSNNLRLTSALQESTANVE--------EWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTS 130 (270)
Q Consensus 59 ~~~~E~el~~Lk~~n~rl~~al~Es~a~v~--------~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~ 130 (270)
..+-..||+.|+++.+||-+-|+-|+..|. +-+.++..|...+..|...+.... +...+
T Consensus 473 ~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~q-------------e~la~ 539 (739)
T PF07111_consen 473 VTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQ-------------ESLAE 539 (739)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH
Confidence 456778899999999998888876655552 223444444444444444443332 33444
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhH
Q psy5601 131 VRSKNETLDSELKCRDEEVKKLTNAKH 157 (270)
Q Consensus 131 l~~~~eele~eL~~~e~Eie~L~~qi~ 157 (270)
+...+.....-+.....+...|+..+.
T Consensus 540 l~~QL~~Ar~~lqes~eea~~lR~EL~ 566 (739)
T PF07111_consen 540 LEEQLEAARKSLQESTEEAAELRRELT 566 (739)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444555555555556666666665553
No 269
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=81.49 E-value=22 Score=31.54 Aligned_cols=93 Identities=17% Similarity=0.321 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhch----HHHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy5601 87 VEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKN----ETLDSELKCRDEEVKKLTNAKHAVEDK 162 (270)
Q Consensus 87 v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~----eele~eL~~~e~Eie~L~~qi~~LE~~ 162 (270)
+..++.+|+.|.....+...+...... ... ..+ .+++.-|.=++.++..+.. .--..
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~~~~--~~~--------------~~~~lvk~e~EqLL~YK~~ql~~~~~---~~~~~ 158 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAESRRS--DTD--------------SKPALVKREFEQLLDYKERQLRELEE---GRSKS 158 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc--CCc--------------chHHHHHHHHHHHHHHHHHHHHhhhc---cCCCC
Confidence 466777777777766666666544310 000 111 1334444444444433332 00011
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Q psy5601 163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLT 198 (270)
Q Consensus 163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~ 198 (270)
+.-+..+++-++.|++-+.-||.=|.++..+|..|+
T Consensus 159 ~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 159 GKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444666666666666666666777766666653
No 270
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=81.01 E-value=34 Score=29.26 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=57.0
Q ss_pred HHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5601 184 DSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIH 261 (270)
Q Consensus 184 E~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~ 261 (270)
|..++..=+..++++..+--+.++-..+-.+..+|+.++..+...++.+..-...+..-+.=|...+......|.+++
T Consensus 76 E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 76 EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445555556666677777667777777888888888888888888888888888777777777777777666666653
No 271
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=80.93 E-value=5.9 Score=28.07 Aligned_cols=26 Identities=12% Similarity=0.349 Sum_probs=9.8
Q ss_pred HHHHhhhhHHHHHHHHHhhHHHHHHH
Q psy5601 183 LDSELKCRDEEVKKLTNAKHAVEDKC 208 (270)
Q Consensus 183 lE~~l~~~d~el~~L~~e~e~l~~~~ 208 (270)
+|.++..++..|+.++.+.+++...+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESV 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 272
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=80.89 E-value=11 Score=35.89 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 169 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIID 244 (270)
Q Consensus 169 l~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~ 244 (270)
+...+..+...+...+..+..+...+..+...+..+....+....++..++..+...+.+|..+..=...+.+|..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~ 294 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKE 294 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhh
Confidence 4555566666666666666666666666666666666666666666666666666666666555554444444443
No 273
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=80.63 E-value=52 Score=31.07 Aligned_cols=54 Identities=26% Similarity=0.272 Sum_probs=23.9
Q ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 197 LTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 197 L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
|.-+++-|.++++.++.-+..+...+...-++++-.+.....+..++..|++++
T Consensus 110 l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 110 LMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444433
No 274
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.51 E-value=11 Score=32.72 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=27.9
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
++......+++.++.+|...+.+++.|++|++++..
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666778888888888888888888888866654
No 275
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=80.27 E-value=12 Score=35.58 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=52.1
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5601 176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVA 255 (270)
Q Consensus 176 L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~ 255 (270)
++..+..++..+......+...+..+..+..++..+.............++.++.....+......=+..|.+...+=..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~ 298 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSE 298 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666555555555555554444
Q ss_pred HHHHHHHHHH
Q psy5601 256 ELATIHREIN 265 (270)
Q Consensus 256 eL~el~~~l~ 265 (270)
.+..+...+.
T Consensus 299 ~~~~l~~~~~ 308 (344)
T PF12777_consen 299 QIEELEEQLK 308 (344)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 4444444433
No 276
>KOG1760|consensus
Probab=80.18 E-value=14 Score=30.55 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=22.9
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 130 SVRSKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 130 ~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
.+.+++..++++|.....+++.|..-..+++-
T Consensus 27 rl~~R~~~lk~dik~~k~~~enledA~~EieL 58 (131)
T KOG1760|consen 27 RLNSRKDDLKADIKEAKTEIENLEDASNEIEL 58 (131)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 34467778888888888888877776665553
No 277
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.95 E-value=55 Score=30.92 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=34.3
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy5601 177 RSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAE 256 (270)
Q Consensus 177 ~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~e 256 (270)
+..|.++|..++..=---.+|-.+...+.-+++.+..++-+++..+..+..++.++-...+.++.....|..+++.+..+
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433222222333333344455555555555555555555554444444444444444444443333333
Q ss_pred H
Q psy5601 257 L 257 (270)
Q Consensus 257 L 257 (270)
|
T Consensus 163 L 163 (302)
T PF09738_consen 163 L 163 (302)
T ss_pred H
Confidence 3
No 278
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=79.51 E-value=27 Score=27.14 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=42.5
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh
Q psy5601 76 LTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 155 (270)
Q Consensus 76 l~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~q 155 (270)
....+-+..........+++.++.+-..+...|..+...|.. ...+..++..++.+|..++.++..+..+
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~----------~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGED----------AEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCC----------THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCccc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667788888888888888888888887764421 2233344444444444444444444444
Q ss_pred h
Q psy5601 156 K 156 (270)
Q Consensus 156 i 156 (270)
+
T Consensus 97 l 97 (108)
T PF02403_consen 97 L 97 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 279
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=79.44 E-value=43 Score=29.41 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q psy5601 94 LQAYKEENQKLKTKYIELEATKG 116 (270)
Q Consensus 94 L~~l~een~rL~~~i~Ele~~~~ 116 (270)
+..-......+-..+.+++.||=
T Consensus 64 idd~~~~f~~~~~tl~~LE~~GF 86 (190)
T PF05266_consen 64 IDDSRSSFESLMKTLSELEEHGF 86 (190)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCC
Confidence 33444555556666677776653
No 280
>KOG1899|consensus
Probab=79.35 E-value=59 Score=33.89 Aligned_cols=33 Identities=15% Similarity=0.362 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q psy5601 165 AAVELRKELTSVRSKNETLDSELKCRDEEVKKL 197 (270)
Q Consensus 165 eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L 197 (270)
++.+|+=....|+.+-.+-|..++..+..+..+
T Consensus 182 evSeLKLkltalEkeq~e~E~K~R~se~l~qev 214 (861)
T KOG1899|consen 182 EVSELKLKLTALEKEQNETEKKLRLSENLMQEV 214 (861)
T ss_pred HHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHH
Confidence 444444455555555555555555555555444
No 281
>KOG1962|consensus
Probab=78.97 E-value=23 Score=31.83 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=26.9
Q ss_pred HHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 124 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 124 le~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
+++++..+.+....++.+++....+++....++..|..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~K 186 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKK 186 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777788888888777777777777744443
No 282
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=78.95 E-value=47 Score=29.58 Aligned_cols=67 Identities=24% Similarity=0.301 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 86 NVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 86 ~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
.+..|+.-+.......+-+..++.=|+- +.. =....+......|+..+..++.++..++.+|+.+-.
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeL-------l~~--~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~ 164 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLEL-------LSK--YGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNR 164 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777666666666666666553331 000 001223344556666666666666666666654443
No 283
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=78.90 E-value=41 Score=28.84 Aligned_cols=10 Identities=10% Similarity=0.491 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy5601 222 ISLVQAQLDT 231 (270)
Q Consensus 222 i~~LE~~Lee 231 (270)
|..+..+++.
T Consensus 140 i~~lr~~iE~ 149 (177)
T PF07798_consen 140 IANLRTEIES 149 (177)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 284
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=78.74 E-value=34 Score=27.89 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=9.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi 156 (270)
.+..+...+..+...+..++..+
T Consensus 11 e~~~~~~~~~~~~~~~~~~~~dl 33 (132)
T PF07926_consen 11 ELQRLKEQEEDAEEQLQSLREDL 33 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 285
>PF15456 Uds1: Up-regulated During Septation
Probab=78.62 E-value=33 Score=28.10 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=13.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi 156 (270)
+|++|+.++..++.-++.++..+
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl 45 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKL 45 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666655555555555555
No 286
>PRK04406 hypothetical protein; Provisional
Probab=78.51 E-value=22 Score=26.60 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=15.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 207 KCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTL 246 (270)
Q Consensus 207 ~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l 246 (270)
++..++.+++-.+..|..|...+-.-....+.+...++.|
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444443333333333333333
No 287
>PRK02119 hypothetical protein; Provisional
Probab=78.00 E-value=23 Score=26.28 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=16.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 207 KCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTL 246 (270)
Q Consensus 207 ~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l 246 (270)
++..++.+.+-.+..|..|...+-.-....+.+...+..|
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444334333333333
No 288
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=77.93 E-value=14 Score=28.39 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy5601 236 QDAQRRIIDTLNHQLAGRVAELATIHRE 263 (270)
Q Consensus 236 ~~~~~~El~~l~e~ld~ki~eL~el~~~ 263 (270)
...++.|+..+++.+...-.+|..+|++
T Consensus 38 R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 38 RRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3444455555555555555555555554
No 289
>KOG4603|consensus
Probab=77.39 E-value=24 Score=30.80 Aligned_cols=6 Identities=33% Similarity=0.429 Sum_probs=2.2
Q ss_pred Hhhhhh
Q psy5601 66 LANLKS 71 (270)
Q Consensus 66 l~~Lk~ 71 (270)
|+-|..
T Consensus 13 l~~~~e 18 (201)
T KOG4603|consen 13 LRYLQE 18 (201)
T ss_pred HHHHHH
Confidence 333333
No 290
>KOG4302|consensus
Probab=77.36 E-value=98 Score=32.40 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=76.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhH
Q psy5601 81 QESTANVEEWKKQLQAYKEENQKLKTKYIELEATKG---VSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKH 157 (270)
Q Consensus 81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~---~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~ 157 (270)
-+++..-.++...|..++.+.+.|-.++.+...++. .++ .-|.+....|.-.++++.++....-.|+..+..+|+
T Consensus 57 e~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e--~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie 134 (660)
T KOG4302|consen 57 EEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIE--GTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIE 134 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677777777777777777777665555 111 134466677777888888888888888888888887
Q ss_pred Hhhhh-hhh-----------hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601 158 AVEDK-CKA-----------AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 200 (270)
Q Consensus 158 ~LE~~-~~e-----------ipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e 200 (270)
.|-.. ++. .+--....+.++..|..|.....+.=..+..+...
T Consensus 135 ~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~ 189 (660)
T KOG4302|consen 135 KLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEE 189 (660)
T ss_pred HHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766 333 01122666777777777766666555555554444
No 291
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=77.15 E-value=62 Score=32.83 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy5601 97 YKEENQKLKTKYI 109 (270)
Q Consensus 97 l~een~rL~~~i~ 109 (270)
|..+++.|...++
T Consensus 418 Y~~RI~eLt~qlQ 430 (518)
T PF10212_consen 418 YMSRIEELTSQLQ 430 (518)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 292
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=76.81 E-value=25 Score=25.34 Aligned_cols=30 Identities=7% Similarity=0.072 Sum_probs=13.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 208 CKLLSQENAELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 208 ~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
.-.++.++++.+.++.+|..+|..++...+
T Consensus 27 n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 27 NLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444
No 293
>KOG0288|consensus
Probab=76.62 E-value=82 Score=31.15 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHH
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNET 182 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~ 182 (270)
....|-+++.....+-..+++.+...|. ++..|.+++..|.++.-+
T Consensus 28 ~~s~~~aq~~~~~a~~~ai~a~~~~~E~---~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 28 AQSRLSAQLVILRAESRAIKAKLQEKEL---ELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443 334444444444444333
No 294
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=75.94 E-value=68 Score=29.85 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=19.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 192 EEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 192 ~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
..+...+.+.+.+.+++...+.+.+++..+|.+...+|..++....
T Consensus 200 r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~ 245 (269)
T PF05278_consen 200 RKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMEST 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444444444333
No 295
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=75.56 E-value=85 Score=30.79 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=17.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 82 ESTANVEEWKKQLQAYKEENQKLKTKYIELEA 113 (270)
Q Consensus 82 Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~ 113 (270)
.....+.....+|..++....+|...+..+..
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555543
No 296
>PRK10698 phage shock protein PspA; Provisional
Probab=75.52 E-value=60 Score=29.03 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=19.4
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 76 LTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 76 l~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele 112 (270)
|.-.+++....+...+..+...-...-++..++.+..
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~ 65 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAE 65 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555444
No 297
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=75.50 E-value=74 Score=30.07 Aligned_cols=9 Identities=22% Similarity=-0.097 Sum_probs=5.3
Q ss_pred hhhHHHHHH
Q psy5601 16 IRANTVSLV 24 (270)
Q Consensus 16 ~~an~~~~~ 24 (270)
...||++.+
T Consensus 64 ~~~~~~~e~ 72 (362)
T TIGR01010 64 DDTYTVQEY 72 (362)
T ss_pred ccHHHHHHH
Confidence 356776644
No 298
>PRK02119 hypothetical protein; Provisional
Probab=75.45 E-value=30 Score=25.64 Aligned_cols=51 Identities=25% Similarity=0.266 Sum_probs=27.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5601 210 LLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATI 260 (270)
Q Consensus 210 ~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el 260 (270)
.++.|+.+||.++.-.+..++++...+-....++..|..++..+...|.++
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555555555555555555555555555544444444433
No 299
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=75.43 E-value=37 Score=26.50 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQR 240 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~ 240 (270)
++..|..++..+..+.....+++
T Consensus 75 le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 75 IELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 300
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=74.94 E-value=38 Score=30.32 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy5601 221 AISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQ 269 (270)
Q Consensus 221 ~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~~~ 269 (270)
.|+.|+..+...+......+.++...+...+..+..-....+++..|||
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLq 81 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQ 81 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333444444444444444444444444444444444443
No 301
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=74.72 E-value=40 Score=26.90 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy5601 140 SELKCRDEEVKKLTNAK 156 (270)
Q Consensus 140 ~eL~~~e~Eie~L~~qi 156 (270)
.++..++.+++.|..++
T Consensus 6 ~q~~ql~~~i~~l~~~i 22 (126)
T TIGR00293 6 AELQILQQQVESLQAQI 22 (126)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444444
No 302
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=74.68 E-value=78 Score=29.92 Aligned_cols=67 Identities=13% Similarity=0.266 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601 86 NVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 86 ~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE 160 (270)
+.++-+.+--.|-..++.+..++.++.. .+|...+..+..+|.+.+..|...+.+|..|+..|....
T Consensus 42 ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~--------~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~ 108 (301)
T PF06120_consen 42 NAEQARQEAIEFADSLDELKEKLKEMSS--------TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQ 108 (301)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556677777788888777653 334455566666777777777777777777777775444
No 303
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.64 E-value=58 Score=28.43 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q psy5601 84 TANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVK 150 (270)
Q Consensus 84 ~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie 150 (270)
...+..+..+++.++.....|...|..... +..++ .++..+-.++.+|+.++..+..++.
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~-~r~~~------~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKK-GREES------EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccc------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777777777777776643 22222 3444444444455444444444443
No 304
>KOG2264|consensus
Probab=74.32 E-value=24 Score=36.26 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=26.9
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy5601 174 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDT 231 (270)
Q Consensus 174 ~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee 231 (270)
++++.+|-++|.+...++++|.++...++++...+...+.+...++..|+..+..+++
T Consensus 89 ~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 89 ASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 3444555555555555555555554445444444444444433344333333333333
No 305
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=74.10 E-value=1e+02 Score=30.99 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5601 217 ELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELA 258 (270)
Q Consensus 217 ~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~ 258 (270)
+++.++..|-..|=.++...+.+..+-..|.=+++.....|+
T Consensus 389 elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 389 ELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred hHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 466666666666666666666666666666555555555554
No 306
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=73.47 E-value=40 Score=26.26 Aligned_cols=8 Identities=13% Similarity=0.268 Sum_probs=2.9
Q ss_pred HHhhHHHH
Q psy5601 177 RSKNETLD 184 (270)
Q Consensus 177 ~~~l~~lE 184 (270)
...+..||
T Consensus 72 e~~V~~LE 79 (99)
T PF10046_consen 72 EEQVTELE 79 (99)
T ss_pred HHHHHHHH
Confidence 33333333
No 307
>PLN02678 seryl-tRNA synthetase
Probab=73.13 E-value=22 Score=35.28 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601 121 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 200 (270)
Q Consensus 121 ~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e 200 (270)
+-++..++.++...++.|.++......+|.. +...+.....+.+++..|.++|..++..+...+.+|..+...
T Consensus 35 il~ld~~~r~l~~~~e~lr~erN~~sk~I~~-------~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 35 VIALDKEWRQRQFELDSLRKEFNKLNKEVAK-------LKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555555555555554444444432 222234556777788888888888888888888888887776
Q ss_pred hH
Q psy5601 201 KH 202 (270)
Q Consensus 201 ~e 202 (270)
+.
T Consensus 108 iP 109 (448)
T PLN02678 108 IG 109 (448)
T ss_pred CC
Confidence 43
No 308
>PRK00736 hypothetical protein; Provisional
Probab=73.02 E-value=31 Score=25.23 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5601 214 ENAELQAAISLVQAQLDT 231 (270)
Q Consensus 214 r~~~lE~~i~~LE~~Lee 231 (270)
+.+-.+..|..|...+-.
T Consensus 13 klafqe~tie~Ln~~v~~ 30 (68)
T PRK00736 13 RVAEQEKTIEELSDQLAE 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 309
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=72.82 E-value=50 Score=26.91 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=11.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi 156 (270)
.++++-.++..+..+++.|..++
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~ 29 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQL 29 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555
No 310
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=72.71 E-value=1.1e+02 Score=30.76 Aligned_cols=87 Identities=28% Similarity=0.348 Sum_probs=57.9
Q ss_pred hHHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHH
Q psy5601 62 WEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSE 141 (270)
Q Consensus 62 ~E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~e 141 (270)
-+..|+.|...-+--..-|+++...-+.+..+|..++..--.|+.+. +.+|...+..+..-+ ++..-
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry------------~~eiQqKnksvsqcl-Emdk~ 454 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERY------------MTEIQQKNKSVSQCL-EMDKT 454 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH------------HHHHHHhhhHHHHHH-HHHHH
Confidence 34456666655555556666776666666666666666666666553 334446666555544 67888
Q ss_pred HHHHHHHHHHHHHhhHHhhh
Q psy5601 142 LKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 142 L~~~e~Eie~L~~qi~~LE~ 161 (270)
|..+++||++|+.-..+||.
T Consensus 455 LskKeeeverLQ~lkgelEk 474 (527)
T PF15066_consen 455 LSKKEEEVERLQQLKGELEK 474 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 99999999999887777774
No 311
>PRK04406 hypothetical protein; Provisional
Probab=72.10 E-value=39 Score=25.26 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5601 211 LSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL 257 (270)
Q Consensus 211 ~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL 257 (270)
++.|+.+||.++.-.+..++++...+-....++..|..++..+...|
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555554444444444444444444333333
No 312
>PF15456 Uds1: Up-regulated During Septation
Probab=72.03 E-value=54 Score=26.89 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 167 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKH----AVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDA 238 (270)
Q Consensus 167 pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e----~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~ 238 (270)
..|..+++.++.++. ++..+++.=..+..+-..-. .-.+-+...+.....+..++.++-.+|..++.+...
T Consensus 32 ~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~ 106 (124)
T PF15456_consen 32 RSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENRLAE 106 (124)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445556666666666 66666665544444421110 011122333344444555555555555555554443
No 313
>PRK02793 phi X174 lysis protein; Provisional
Probab=71.87 E-value=38 Score=25.04 Aligned_cols=39 Identities=13% Similarity=0.009 Sum_probs=15.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 208 CKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTL 246 (270)
Q Consensus 208 ~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l 246 (270)
+..++.+++-.+..|..|..-+-.-+.....+...++.|
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444333333333333333333
No 314
>KOG1962|consensus
Probab=71.66 E-value=49 Score=29.82 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy5601 149 VKKLTN 154 (270)
Q Consensus 149 ie~L~~ 154 (270)
...++.
T Consensus 136 ~~~lk~ 141 (216)
T KOG1962|consen 136 NEALKK 141 (216)
T ss_pred HHHHHH
Confidence 333333
No 315
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=71.65 E-value=30 Score=27.89 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHH
Q psy5601 138 LDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKK 196 (270)
Q Consensus 138 le~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~ 196 (270)
+-.++..+..++.+|+..+...|.. +..=+..-.+.++|-.++-.+|+.+......+.+
T Consensus 6 ~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVse 65 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSE 65 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4455566666676777666555544 2222333344444444444444444444444433
No 316
>PRK00846 hypothetical protein; Provisional
Probab=71.60 E-value=41 Score=25.40 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=20.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e 248 (270)
+.+++..++.+.+-.+..|..|...+-.-....+.+...+..|.+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555444444444444444444333
No 317
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=71.51 E-value=33 Score=31.46 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=39.5
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLN 247 (270)
Q Consensus 176 L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~ 247 (270)
+..++.++|..+.....-+ -++..+++.+..++..|...|+.+..+|+.+++++..+-.+|..+.
T Consensus 38 ~~~r~~~le~~~~~~~~~~-------~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLL-------TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred hHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444433222 2345555566666677777777777777777777777776666543
No 318
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=71.49 E-value=21 Score=26.08 Aligned_cols=23 Identities=17% Similarity=0.432 Sum_probs=9.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi 156 (270)
+|..|+..+.-.+.-|+.|..-|
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v 27 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVV 27 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333333
No 319
>PRK09343 prefoldin subunit beta; Provisional
Probab=71.44 E-value=53 Score=26.56 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 220 AAISLVQAQLDTLLASQDAQRRIIDT 245 (270)
Q Consensus 220 ~~i~~LE~~Lee~~~~~~~~~~El~~ 245 (270)
.+|..++.....++....+++..+..
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 320
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=71.31 E-value=21 Score=28.57 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=12.4
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhH
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKH 157 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~ 157 (270)
..+.+++.+|..+-.++..|+.++.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~ 32 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQ 32 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555543
No 321
>PRK04325 hypothetical protein; Provisional
Probab=71.15 E-value=40 Score=25.04 Aligned_cols=30 Identities=17% Similarity=0.023 Sum_probs=11.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 208 CKLLSQENAELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 208 ~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
+..++.+.+-.+..|..|...+-.-.....
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~ 40 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLD 40 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 322
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=70.92 E-value=38 Score=24.71 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=28.6
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 174 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLA 234 (270)
Q Consensus 174 ~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~ 234 (270)
+.-+..|..++..+...+.-|..+..++..++. +....+..+|.....+|..++.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666544432 2233344445555555444444
No 323
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=70.89 E-value=91 Score=29.04 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=16.5
Q ss_pred HhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5601 186 ELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQA 227 (270)
Q Consensus 186 ~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~ 227 (270)
.+..++.++.+++..+.++..++-.++.+...+...|..+..
T Consensus 215 eL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~s 256 (269)
T PF05278_consen 215 ELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKS 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334333444444444444443333333333333
No 324
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=70.41 E-value=1.3e+02 Score=30.54 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 235 SQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 235 ~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
....+..++..+...+...-..|+..|+..+.-
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~ 379 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRRKAAER 379 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666655443
No 325
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=69.92 E-value=93 Score=28.78 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5601 223 SLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELAT 259 (270)
Q Consensus 223 ~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~e 259 (270)
..+...+..-+...++++.++..|......+.....+
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~ 225 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQD 225 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333444444444444444444444444333333333
No 326
>KOG4571|consensus
Probab=69.70 E-value=22 Score=33.39 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=34.8
Q ss_pred HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 198 TNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQ 239 (270)
Q Consensus 198 ~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~ 239 (270)
+.+.+.+..+++.++.||..|..++..+++++.-+++...+.
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999888888776643
No 327
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=69.53 E-value=56 Score=26.06 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=16.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601 206 DKCKLLSQENAELQAAISLVQAQLDTL 232 (270)
Q Consensus 206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~ 232 (270)
++++.+.=+|.-|..+|..|..+|+..
T Consensus 47 qE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 47 QENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445556666666777777666643
No 328
>PRK02793 phi X174 lysis protein; Provisional
Probab=69.11 E-value=40 Score=24.90 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5601 211 LSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELAT 259 (270)
Q Consensus 211 ~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~e 259 (270)
++.|+.+||.++.-.+..++++...+-.....+..|..++..+...|.+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555554444444444444444433
No 329
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=68.58 E-value=1.6e+02 Score=30.92 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=10.3
Q ss_pred hchHHHHHHHHHHHHHHHHHHH
Q psy5601 133 SKNETLDSELKCRDEEVKKLTN 154 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~ 154 (270)
.++..++.++...+..+...+.
T Consensus 274 ~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 274 RQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 330
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=68.48 E-value=52 Score=25.31 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=2.1
Q ss_pred HHHHhH
Q psy5601 208 CKLLSQ 213 (270)
Q Consensus 208 ~e~~~~ 213 (270)
++.+..
T Consensus 41 i~~l~~ 46 (89)
T PF13747_consen 41 IQRLDA 46 (89)
T ss_pred HHHHHh
Confidence 333333
No 331
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=67.90 E-value=36 Score=27.17 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q psy5601 135 NETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 135 ~eele~eL~~~e~Eie~L~~qi 156 (270)
...+..++..+...+..|...+
T Consensus 8 ~~ql~~~i~~l~~~i~~l~~~i 29 (126)
T TIGR00293 8 LQILQQQVESLQAQIAALRALI 29 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333
No 332
>PRK00846 hypothetical protein; Provisional
Probab=67.85 E-value=50 Score=24.92 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=32.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5601 208 CKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIH 261 (270)
Q Consensus 208 ~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~ 261 (270)
-+.++.|+.+||.++.-.+..++++...+-.....+..|..++......|.++.
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666666666666666666666666666666666666555555555543
No 333
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=67.78 E-value=17 Score=30.17 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHH
Q psy5601 167 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA 203 (270)
Q Consensus 167 pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~ 203 (270)
.+..+.+....-.+.+|+++++.+|.+|..|+.++++
T Consensus 83 ~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~ 119 (131)
T PF04859_consen 83 QEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDE 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555666666666666665555443
No 334
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=67.67 E-value=77 Score=29.02 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=20.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 82 ESTANVEEWKKQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 82 Es~a~v~~wk~qL~~l~een~rL~~~i~Ele 112 (270)
+....+.....+++..+.-|++|+.-|....
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~ 33 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQ 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666677777777777777666554
No 335
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=67.27 E-value=80 Score=26.98 Aligned_cols=46 Identities=15% Similarity=0.277 Sum_probs=19.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQ 249 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ 249 (270)
+..++..++..+..|+.++..+-.....+......+..+...+.+.
T Consensus 94 L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er 139 (158)
T PF09744_consen 94 LQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHER 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444443
No 336
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=67.23 E-value=1.4e+02 Score=29.96 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRI 242 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~E 242 (270)
+..-+.=+...|...+..+..+...
T Consensus 138 l~~ll~Pl~e~l~~f~~~v~~~~~~ 162 (475)
T PRK10361 138 LNSLLSPLREQLDGFRRQVQDSFGK 162 (475)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 337
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=66.62 E-value=71 Score=32.03 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=7.3
Q ss_pred chHHHHHHHHHHHHHHH
Q psy5601 134 KNETLDSELKCRDEEVK 150 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie 150 (270)
.|.-|-+++..+..++.
T Consensus 60 TlrTlva~~k~~r~~~~ 76 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLA 76 (472)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 338
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=66.55 E-value=71 Score=26.15 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 220 AAISLVQAQLDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 220 ~~i~~LE~~Lee~~~~~~~~~~El~~l~e 248 (270)
.+++.|+-++..++...+.+..++..|..
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 339
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.46 E-value=52 Score=24.58 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=31.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5601 210 LLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIH 261 (270)
Q Consensus 210 ~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~ 261 (270)
.++.|+.+||.++.--+..|+++...+.+....+..+..+++-+...+.++.
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455566666666666666666666666666666666666666665555543
No 340
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=66.42 E-value=1e+02 Score=27.92 Aligned_cols=31 Identities=6% Similarity=0.270 Sum_probs=15.9
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 131 VRSKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 131 l~~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
+..+...|...+..+...|..|-.++..+-.
T Consensus 85 t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 85 TLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3345555555555555555555555544444
No 341
>KOG3433|consensus
Probab=66.34 E-value=79 Score=27.93 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 201 KHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 201 ~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e 248 (270)
...+.+.++....-+...+.+...|...+..++...+.++.++..+.+
T Consensus 97 ~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 97 KATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred HhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333343333333334444445555555555545555555554443
No 342
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=66.27 E-value=22 Score=29.58 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=15.7
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
..+.....-+..|+++++.++.||..|+.++
T Consensus 87 sli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L 117 (131)
T PF04859_consen 87 SLIKTYEIVVKKLEAELRAKDSEIDRLREKL 117 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555555555555555555
No 343
>PLN02939 transferase, transferring glycosyl groups
Probab=65.97 E-value=2.1e+02 Score=31.42 Aligned_cols=110 Identities=21% Similarity=0.272 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------hccchhHHHHHHHHHhhhhhchH-----------HHHHHHHHHHHH
Q psy5601 86 NVEEWKKQLQAYKEENQKLKTKYIELEA------TKGVSEAAVELRKELTSVRSKNE-----------TLDSELKCRDEE 148 (270)
Q Consensus 86 ~v~~wk~qL~~l~een~rL~~~i~Ele~------~~~~~~~~~ele~e~~~l~~~~e-----------ele~eL~~~e~E 148 (270)
.+.+.-.+-++++.++.-|..++.+..+ +++....+ +++..+.++..+. -|-.++..+.+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (977)
T PLN02939 157 DLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEI--LEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEE 234 (977)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchh--hHHHHHHHhhhhhccccccccccccHHHHHHHHHHH
Confidence 3566667777888888888888887432 22211110 1111111111111 133444444555
Q ss_pred HHHHHHhhHHhhhh-------hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q psy5601 149 VKKLTNAKHAVEDK-------CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKL 197 (270)
Q Consensus 149 ie~L~~qi~~LE~~-------~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L 197 (270)
.--|+..+.-|... +..+-.|..+..-|...|.+||+++-..+.++..|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (977)
T PLN02939 235 NMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKL 290 (977)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 55555555444443 34445567777778888888888877766665554
No 344
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=65.92 E-value=1.4e+02 Score=29.28 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHH
Q psy5601 166 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED 206 (270)
Q Consensus 166 ipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~ 206 (270)
+..|+.+...+...+..+-.++...-..+..+..++..+..
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~ 327 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQ 327 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHH
Confidence 55666666666666666666665554444444444444333
No 345
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=65.88 E-value=72 Score=25.98 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIH 261 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~ 261 (270)
+...+..++..++.+......+...+..+.+.++.....+..+.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444445554444444444444443
No 346
>KOG0239|consensus
Probab=65.73 E-value=1.8e+02 Score=30.53 Aligned_cols=39 Identities=23% Similarity=0.157 Sum_probs=23.5
Q ss_pred hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKT 106 (270)
Q Consensus 68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~ 106 (270)
.+......+..+|.++.....+|+....+.-.....+..
T Consensus 111 ~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~ 149 (670)
T KOG0239|consen 111 ELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQ 149 (670)
T ss_pred ccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHh
Confidence 456666677777777777777776555444443333333
No 347
>PRK00736 hypothetical protein; Provisional
Probab=65.53 E-value=50 Score=24.08 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5601 213 QENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVA 255 (270)
Q Consensus 213 ~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~ 255 (270)
.|+.+||.++.-.+..++++...+-.....+..|..++..+..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443333333
No 348
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=65.40 E-value=47 Score=23.64 Aligned_cols=46 Identities=17% Similarity=0.243 Sum_probs=20.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5601 210 LLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVA 255 (270)
Q Consensus 210 ~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~ 255 (270)
.+.+..+.|..+|.-|..++..++......+.|..+....+|....
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~ 52 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3333333344444444444444444444444455555555554443
No 349
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=65.24 E-value=1.2e+02 Score=28.24 Aligned_cols=67 Identities=12% Similarity=0.189 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 201 KHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 201 ~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
+..+..+++.......++...-..|+..++..+.+.+..+..|..|...|=--.+++..+..+|.++
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555666666555555566666555555555555555555544
No 350
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=64.94 E-value=1.6e+02 Score=29.65 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5601 96 AYKEENQKLKTKYIELE 112 (270)
Q Consensus 96 ~l~een~rL~~~i~Ele 112 (270)
.|+.-|.+=+.+|++|.
T Consensus 321 kLk~tn~kQq~~IqdLq 337 (527)
T PF15066_consen 321 KLKHTNRKQQNRIQDLQ 337 (527)
T ss_pred HHHhhhHHHHHHHHHhh
Confidence 34444444444444443
No 351
>PRK04325 hypothetical protein; Provisional
Probab=64.88 E-value=55 Score=24.28 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=21.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5601 211 LSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL 257 (270)
Q Consensus 211 ~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL 257 (270)
++.|+.+||.++.-.+..++++...+-.....+..|..++..+...|
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443333333
No 352
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.63 E-value=1e+02 Score=27.28 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=19.6
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 76 LTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 76 l~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele 112 (270)
|.-.+++....+.+.+..+......--++..++.+..
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~ 65 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLE 65 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555554444
No 353
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=64.32 E-value=69 Score=25.22 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy5601 140 SELKCRDEEVKKLTNAK 156 (270)
Q Consensus 140 ~eL~~~e~Eie~L~~qi 156 (270)
..+..+..++..|..++
T Consensus 6 ~~~~~l~~~i~~l~~~~ 22 (129)
T cd00890 6 AQLQQLQQQLEALQQQL 22 (129)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444443
No 354
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=64.32 E-value=1.4e+02 Score=28.73 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=29.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHH
Q psy5601 207 KCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRII-DTLNHQLAGRVAELATIHREINT 266 (270)
Q Consensus 207 ~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El-~~l~e~ld~ki~eL~el~~~l~~ 266 (270)
.+..+...+..|+..+..+..+|+..-....+++.+| ..|.-.|..|...|..+++-|+.
T Consensus 145 ~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~ 205 (342)
T PF06632_consen 145 ENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLAS 205 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333444444444444445554444444444443 45556666666666666655543
No 355
>KOG4196|consensus
Probab=64.23 E-value=84 Score=26.18 Aligned_cols=71 Identities=18% Similarity=0.205 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601 83 STANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE 160 (270)
+...|-+||..--+|+..-=-.-.++.... --.+|+.++..|...|+.|..++..+..|.+.++...+.|-
T Consensus 45 ~reEVvrlKQrRRTLKNRGYA~sCR~KRv~-------Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 45 SREEVVRLKQRRRTLKNRGYAQSCRVKRVQ-------QKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688898888888887666666665554 35566678888888888888887777777777776664443
No 356
>PRK11519 tyrosine kinase; Provisional
Probab=64.19 E-value=1.9e+02 Score=30.28 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=9.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHH
Q psy5601 133 SKNETLDSELKCRDEEVKKLTN 154 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~ 154 (270)
.++.+++.++...+..+...+.
T Consensus 274 ~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 274 QQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 357
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=64.03 E-value=23 Score=35.50 Aligned_cols=25 Identities=4% Similarity=0.041 Sum_probs=16.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhH
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKH 157 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~ 157 (270)
.....++..|..++.|+..|+.+++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777777777774
No 358
>KOG2264|consensus
Probab=63.86 E-value=67 Score=33.20 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5601 202 HAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIH 261 (270)
Q Consensus 202 e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~ 261 (270)
+.++.++-.++.+.+++...|..+...++++++....-+.||..|+...+.-...+.+++
T Consensus 89 ~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 89 ASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555556565555555555555554
No 359
>PRK12704 phosphodiesterase; Provisional
Probab=63.85 E-value=1.7e+02 Score=29.62 Aligned_cols=33 Identities=6% Similarity=0.185 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5601 228 QLDTLLASQDAQRRIIDTLNHQLAGRVAELATI 260 (270)
Q Consensus 228 ~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el 260 (270)
.|+..+...+....++..+......++..+..+
T Consensus 118 ~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~l 150 (520)
T PRK12704 118 ELEQKQQELEKKEEELEELIEEQLQELERISGL 150 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333333344444444555555554444444433
No 360
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=63.73 E-value=72 Score=25.24 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi 156 (270)
.|-.+...|..+..++..+...+
T Consensus 8 e~~~~~~~l~~kr~e~~~~~~~~ 30 (126)
T PF13863_consen 8 EMFLVQLALDTKREEIERREEQL 30 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 361
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=63.11 E-value=33 Score=24.65 Aligned_cols=62 Identities=24% Similarity=0.302 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601 84 TANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA 158 (270)
Q Consensus 84 ~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~ 158 (270)
.+.+.++..++..++....++..++.--.=-...|. .=|+.....+..+..++..|...+..
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~-------------eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPE-------------EVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-C-------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666667777777776666666531100001111 23455566666677777766666643
No 362
>KOG4603|consensus
Probab=62.89 E-value=1.1e+02 Score=26.91 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHhhHHHHHHhhhh
Q psy5601 166 AVELRKELTSVRSKNETLDSELKCR 190 (270)
Q Consensus 166 ipel~~e~~~L~~~l~~lE~~l~~~ 190 (270)
+|++.+.+.+|+.+...-..+|.+.
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333333
No 363
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=62.75 E-value=1.1e+02 Score=26.80 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=8.5
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q psy5601 211 LSQENAELQAAISLVQAQLD 230 (270)
Q Consensus 211 ~~~r~~~lE~~i~~LE~~Le 230 (270)
+-.++..+..++..|+.+|.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444
No 364
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=62.25 E-value=39 Score=27.22 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=12.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKHA 158 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~~ 158 (270)
..+..++.+|..+-.++..|+.++.+
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~e 33 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAE 33 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554433
No 365
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=61.92 E-value=35 Score=30.88 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=17.8
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 129 TSVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 129 ~~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
.++....-.++++|..++.+..+|..-+
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll 155 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELL 155 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677776666666666655
No 366
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=61.83 E-value=1.9e+02 Score=29.34 Aligned_cols=28 Identities=7% Similarity=0.119 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5601 231 TLLASQDAQRRIIDTLNHQLAGRVAELA 258 (270)
Q Consensus 231 e~~~~~~~~~~El~~l~e~ld~ki~eL~ 258 (270)
..+...+.+..++..+.......+..+.
T Consensus 115 ~re~eLee~~~e~~~~~~~~~~~le~~a 142 (514)
T TIGR03319 115 NKEKNLDEKEEELEELIAEQREELERIS 142 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333344444444444444433
No 367
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=61.68 E-value=68 Score=27.62 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=19.4
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601 171 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 205 (270)
Q Consensus 171 ~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~ 205 (270)
+..+.+..+++.+..++..++.++..|+.+.+.+.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555566666666666555443
No 368
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=61.30 E-value=53 Score=23.28 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 211 LSQENAELQAAISLVQAQLDTLLASQDAQRRII 243 (270)
Q Consensus 211 ~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El 243 (270)
++++...++..|.+++.+.++.+...+.+..-+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333
No 369
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=60.98 E-value=55 Score=32.13 Aligned_cols=73 Identities=22% Similarity=0.304 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601 121 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 200 (270)
Q Consensus 121 ~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e 200 (270)
+-++..++.++...++.|.++......+|..+.+ .......+..++..|+.+|..++..+...+.++..+...
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~-------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALSKEIGQAKR-------KGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555555555555544444433211 112334566777777777777777777777777776655
No 370
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=60.90 E-value=54 Score=23.89 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 187 LKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLA 234 (270)
Q Consensus 187 l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~ 234 (270)
+.+....+......++....++..++.+...++..+..+..+|.....
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 371
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=60.68 E-value=93 Score=25.48 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=17.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 211 LSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTL 246 (270)
Q Consensus 211 ~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l 246 (270)
+..+...++-+|.+|+.+-+.++.+.++++.++..+
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555443
No 372
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=60.28 E-value=1.5e+02 Score=28.71 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy5601 135 NETLDSELKCRDEEVKKLTN 154 (270)
Q Consensus 135 ~eele~eL~~~e~Eie~L~~ 154 (270)
+..+..-+..+..++..|..
T Consensus 20 L~~ld~~i~~l~~~i~~ld~ 39 (383)
T PF04100_consen 20 LSNLDELIAKLRKEIRELDE 39 (383)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 373
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=60.22 E-value=83 Score=24.76 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5601 90 WKKQLQAYKEENQKLKTKY 108 (270)
Q Consensus 90 wk~qL~~l~een~rL~~~i 108 (270)
+..++..+.....+|...+
T Consensus 11 l~~~i~~l~~~~~~l~~~~ 29 (129)
T cd00890 11 LQQQLEALQQQLQKLEAQL 29 (129)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 374
>KOG4593|consensus
Probab=60.02 E-value=2.3e+02 Score=29.86 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=8.8
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q psy5601 245 TLNHQLAGRVAELATIHRE 263 (270)
Q Consensus 245 ~l~e~ld~ki~eL~el~~~ 263 (270)
-|++.+.++...+..+|.=
T Consensus 279 ~LqeE~e~Lqskl~~~~~l 297 (716)
T KOG4593|consen 279 LLQEELEGLQSKLGRLEKL 297 (716)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 375
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=59.63 E-value=1.6e+02 Score=27.96 Aligned_cols=9 Identities=22% Similarity=0.265 Sum_probs=3.3
Q ss_pred HHHHhhHHh
Q psy5601 151 KLTNAKHAV 159 (270)
Q Consensus 151 ~L~~qi~~L 159 (270)
+|..+|..|
T Consensus 139 kL~k~i~~L 147 (310)
T PF09755_consen 139 KLQKKIERL 147 (310)
T ss_pred HHHHHHHHH
Confidence 333333333
No 376
>KOG0244|consensus
Probab=59.60 E-value=46 Score=35.90 Aligned_cols=101 Identities=12% Similarity=0.147 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 167 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTL 246 (270)
Q Consensus 167 pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l 246 (270)
++.......+..++..++.++..++........+....+.-.+..+...-.++.++..++.+...+..+...+..--..+
T Consensus 463 ~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl 542 (913)
T KOG0244|consen 463 IGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKL 542 (913)
T ss_pred ccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHh
Confidence 44566667788888888888888887776665554445555555566666677777777777777777766666655566
Q ss_pred HHHHhHHHHHHHHHHHHHHHh
Q psy5601 247 NHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 247 ~e~ld~ki~eL~el~~~l~~~ 267 (270)
.+.+..++..|..-+..|.+.
T Consensus 543 ~eer~qklk~le~q~s~lkk~ 563 (913)
T KOG0244|consen 543 GEERVQKLKSLETQISLLKKK 563 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 666666666666655555443
No 377
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=59.44 E-value=81 Score=24.40 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=12.7
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhh
Q psy5601 173 LTSVRSKNETLDSELKCRDEEVKKLTNAK 201 (270)
Q Consensus 173 ~~~L~~~l~~lE~~l~~~d~el~~L~~e~ 201 (270)
...+.+.+.+++.++...+.++-..+...
T Consensus 26 ~~~lE~k~~rl~~Ek~kadqkyfa~mr~~ 54 (96)
T PF08647_consen 26 LTILEQKKLRLEAEKAKADQKYFAAMRSK 54 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444444444444444444443333
No 378
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=59.30 E-value=75 Score=23.97 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=46.2
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHH-----HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 174 TSVRSKNETLDSELKCRDEEVKKLT-----NAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 174 ~~L~~~l~~lE~~l~~~d~el~~L~-----~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e 248 (270)
......|..|...+......+.... ...-....-+..+...+..+...+..++..++..+...-....+++.+..
T Consensus 15 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~ 94 (123)
T PF02050_consen 15 QEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEK 94 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333333 22233445666666666667777777777777777777766667776666
Q ss_pred HHhHHHHHHH
Q psy5601 249 QLAGRVAELA 258 (270)
Q Consensus 249 ~ld~ki~eL~ 258 (270)
.++.......
T Consensus 95 L~e~~~~~~~ 104 (123)
T PF02050_consen 95 LKERRREEYQ 104 (123)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555443
No 379
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=59.13 E-value=1.8e+02 Score=28.20 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=10.9
Q ss_pred cchhHHHHhhhhhcchhhhhhh
Q psy5601 59 AKKWEIELANLKSNNLRLTSAL 80 (270)
Q Consensus 59 ~~~~E~el~~Lk~~n~rl~~al 80 (270)
..+| |+.+.--...|++|-
T Consensus 51 s~gw---ff~i~~re~qlk~aa 69 (401)
T PF06785_consen 51 SLGW---FFAIGRREKQLKTAA 69 (401)
T ss_pred HhHH---HHHhhHHHHHHHHHH
Confidence 3456 666555555666654
No 380
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=59.03 E-value=56 Score=26.07 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=21.8
Q ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 194 VKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLA 234 (270)
Q Consensus 194 l~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~ 234 (270)
|..+-.++..|...+..+..+|+.|.-.+.-|...|.....
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444445555555555666666666655555555443
No 381
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=58.82 E-value=63 Score=31.65 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=43.1
Q ss_pred HHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhh-hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhh
Q psy5601 123 ELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKA-AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK 201 (270)
Q Consensus 123 ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~e-ipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~ 201 (270)
.+..++.++...++.|.++......+|..+. ..... ...+..++..|+.+|..++..+..++.++..+...+
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~-------~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSKQIGKAK-------GQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444455555555555444444443321 11222 456777788888888888888888888888776663
No 382
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=58.81 E-value=95 Score=24.99 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHH
Q psy5601 64 IELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELK 143 (270)
Q Consensus 64 ~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~ 143 (270)
++|=+|+-.|.+|. ++.+++.+.++...-+|..++-+++-++.... ....++...+......-.
T Consensus 10 KeLVDLQIe~~rL~----------Eq~EaE~FELk~~vL~lE~rvleLel~~~~~~------~~~~~~~~~~~~~~~~~~ 73 (108)
T PF14739_consen 10 KELVDLQIETNRLR----------EQHEAEKFELKNEVLRLENRVLELELHGDKAA------PQIADLRHRLAEAQEDRQ 73 (108)
T ss_pred HHHHHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh------HHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhH
Q psy5601 144 CRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNE 181 (270)
Q Consensus 144 ~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~ 181 (270)
++..+.-.|....-.+.. ..+....+...|..+|.
T Consensus 74 ~l~~e~~~l~~~~~a~~k---~~~~e~~k~qeL~~eL~ 108 (108)
T PF14739_consen 74 ELQEEYVSLKKNYQALPK---AFEAEVAKNQELGLELQ 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHH---hhccHHHHHHHHhhccC
No 383
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=58.29 E-value=99 Score=27.44 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhH
Q psy5601 137 TLDSELKCRDEEVKKLTNAKH 157 (270)
Q Consensus 137 ele~eL~~~e~Eie~L~~qi~ 157 (270)
.|+.+|..++..+........
T Consensus 100 rLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666655553
No 384
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=58.10 E-value=1.4e+02 Score=26.86 Aligned_cols=8 Identities=0% Similarity=0.335 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy5601 224 LVQAQLDT 231 (270)
Q Consensus 224 ~LE~~Lee 231 (270)
.++..++.
T Consensus 170 r~e~kiee 177 (225)
T COG1842 170 RMEEKIEE 177 (225)
T ss_pred HHHHHHHH
Confidence 33333333
No 385
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=58.09 E-value=1.3e+02 Score=26.34 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHh------------------hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 176 VRSKNETLDSELKCRDEEVKKLTNA------------------KHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 176 L~~~l~~lE~~l~~~d~el~~L~~e------------------~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
|.++|.+||-+-...+..++.|-.+ ..++.....++.....+++++-.-||.+|+-++..+.
T Consensus 9 LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~ 88 (178)
T PF14073_consen 9 LQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVE 88 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHH----HHHHHHHHHHh
Q psy5601 238 AQRRIIDTLNHQLAGRVAE----LATIHREINTA 267 (270)
Q Consensus 238 ~~~~El~~l~e~ld~ki~e----L~el~~~l~~~ 267 (270)
..+.+-....+.-.....+ -.+++-.+.+|
T Consensus 89 ~ae~er~~~le~q~~l~~e~~~~~~~~~~klekL 122 (178)
T PF14073_consen 89 SAEKERNAVLEQQVSLQRERQQDQSELQAKLEKL 122 (178)
T ss_pred HHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHH
No 386
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=57.98 E-value=69 Score=24.12 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhhHHHHHHhhh
Q psy5601 168 ELRKELTSVRSKNETLDSELKC 189 (270)
Q Consensus 168 el~~e~~~L~~~l~~lE~~l~~ 189 (270)
++...++.+...|..++....+
T Consensus 39 ~l~~klDa~~~~l~~l~~~V~~ 60 (75)
T PF05531_consen 39 ELNKKLDAQSAQLTTLNTKVNE 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 387
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=57.78 E-value=2.6e+02 Score=29.64 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHH
Q psy5601 163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCK 209 (270)
Q Consensus 163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e 209 (270)
......|+..+..|...|..++.+...-..++...+.+.+.|...+.
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLs 207 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLS 207 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666554444455554445444444433
No 388
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=57.72 E-value=1.5e+02 Score=26.81 Aligned_cols=16 Identities=6% Similarity=0.235 Sum_probs=6.0
Q ss_pred HHHHHhhHHHHHHhhh
Q psy5601 174 TSVRSKNETLDSELKC 189 (270)
Q Consensus 174 ~~L~~~l~~lE~~l~~ 189 (270)
+.|+..+..|+..|..
T Consensus 116 ~~l~~~~~~Le~Ki~e 131 (225)
T COG1842 116 EKLKKQLAALEQKIAE 131 (225)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 389
>COG5570 Uncharacterized small protein [Function unknown]
Probab=57.69 E-value=51 Score=23.21 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 91 KKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 91 k~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
+.-|.++...-..|...|++.-.+.+... -.+.+|+..--.+.++|+.|++++
T Consensus 4 eshl~eL~kkHg~le~ei~ea~n~Ps~dd-------------~~i~eLKRrKL~lKeeIEkLka~~ 56 (57)
T COG5570 4 ESHLAELEKKHGNLEREIQEAMNSPSSDD-------------LAIRELKRRKLRLKEEIEKLKAQM 56 (57)
T ss_pred HHHHHHHHHhhchHHHHHHHHhcCCCcch-------------HHHHHHHHHHHHHHHHHHHHhccC
Confidence 44566777777778888887765444322 234455555555666666666553
No 390
>KOG3433|consensus
Probab=57.26 E-value=1.4e+02 Score=26.44 Aligned_cols=61 Identities=23% Similarity=0.192 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5601 200 AKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATI 260 (270)
Q Consensus 200 e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el 260 (270)
-+.+|..++.....+...+...+...+.-.+..+.+.+++..++..++..+.....+|..+
T Consensus 82 ~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~ 142 (203)
T KOG3433|consen 82 VLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKI 142 (203)
T ss_pred HHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666666666666666666666666666666555555555443
No 391
>KOG0240|consensus
Probab=57.20 E-value=2.4e+02 Score=29.14 Aligned_cols=29 Identities=34% Similarity=0.593 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 84 TANVEEWKKQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 84 ~a~v~~wk~qL~~l~een~rL~~~i~Ele 112 (270)
.-.++.|+..+...++.+..+...+.-+.
T Consensus 340 e~~~e~~~r~~e~~kd~~~~~~~~~~~~~ 368 (607)
T KOG0240|consen 340 ELTAEEWKRKLEKKKDKNVALKEELEKLR 368 (607)
T ss_pred HhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33468899999988888877766665433
No 392
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=56.92 E-value=63 Score=26.02 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=25.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601 192 EEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL 232 (270)
Q Consensus 192 ~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~ 232 (270)
..|..+-.++..|...+..+..+|+.|...+.-|...|...
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555566666666667777777766666666654
No 393
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=56.83 E-value=83 Score=23.70 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=9.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q psy5601 204 VEDKCKLLSQENAELQAAISLV 225 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~~L 225 (270)
+..+++........++.++...
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 394
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=56.63 E-value=68 Score=31.51 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=12.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE 160 (270)
.+..|..++..+..++..|+..+..+.
T Consensus 335 ~~~~l~~~~~~~~~~l~~l~~~l~~l~ 361 (451)
T PF03961_consen 335 KLEELEEELEELKEELEKLKKNLKKLK 361 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444555544444333
No 395
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=56.46 E-value=2.3e+02 Score=28.80 Aligned_cols=12 Identities=42% Similarity=0.434 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy5601 93 QLQAYKEENQKL 104 (270)
Q Consensus 93 qL~~l~een~rL 104 (270)
|+....+++++|
T Consensus 310 qV~qs~EKIa~L 321 (518)
T PF10212_consen 310 QVQQSQEKIAKL 321 (518)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 396
>PLN02320 seryl-tRNA synthetase
Probab=56.17 E-value=69 Score=32.41 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhH
Q psy5601 164 KAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKH 202 (270)
Q Consensus 164 ~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e 202 (270)
.....+..+...|+.+|..+|..+...+.++..+...+.
T Consensus 130 ~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iP 168 (502)
T PLN02320 130 SERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIP 168 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345677888888888888888888888888888777643
No 397
>PRK14011 prefoldin subunit alpha; Provisional
Probab=56.12 E-value=1.2e+02 Score=25.43 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=10.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi 156 (270)
+++++-..|..|..+++.|...+
T Consensus 4 elq~~~~~l~~~~~qie~L~~si 26 (144)
T PRK14011 4 ELQNQFMALEVYNQQVQKLQEEL 26 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555554444
No 398
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=56.11 E-value=45 Score=25.68 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=7.0
Q ss_pred hhHHHHHHhhhhHHHHHHH
Q psy5601 179 KNETLDSELKCRDEEVKKL 197 (270)
Q Consensus 179 ~l~~lE~~l~~~d~el~~L 197 (270)
++..+-..+.+.+.++..|
T Consensus 44 E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 44 ELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHHHHHHHhhccHHHHHHH
Confidence 3333333333333333333
No 399
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=56.09 E-value=1.4e+02 Score=26.05 Aligned_cols=97 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH--HhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-----hhhh
Q psy5601 94 LQAYKEENQKLKTKYIELEATKGVSEAAVELRKE--LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-----CKAA 166 (270)
Q Consensus 94 L~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e--~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-----~~ei 166 (270)
|..+.++...+-.++..+-..+...+.-..+..+ ...+...+..|+.++..+..++..|+...+.++.. ....
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhh
Q psy5601 167 VELRKELTSVRSKNETLDSELKCR 190 (270)
Q Consensus 167 pel~~e~~~L~~~l~~lE~~l~~~ 190 (270)
-...++++.|+.....+.+.+..+
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
No 400
>KOG2991|consensus
Probab=55.87 E-value=1.8e+02 Score=27.22 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=66.6
Q ss_pred HHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhh--hchHHHHHHH
Q psy5601 65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVR--SKNETLDSEL 142 (270)
Q Consensus 65 el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~--~~~eele~eL 142 (270)
....||.+..+|+--++++...-.-+=.+++.-.-+-..+..+|..+..+-.. + .-.++.-.-... --...|+..+
T Consensus 109 ~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~P-s-~~qlR~~llDPAinl~F~rlK~el 186 (330)
T KOG2991|consen 109 DITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQP-S-VAQLRSTLLDPAINLFFLRLKGEL 186 (330)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-H-HHHHHHHhhChHHHHHHHHHHHHH
Confidence 34567777777777666665554445555555555556666666666543221 1 111111111111 1113445555
Q ss_pred HHHHHHHHHHHHhhHHhhh-h-hhhhHHHHHHHHHHHHhhHHH-----HHHhhhhHHHHHHHHHhhHHHHHHHHHHhH
Q psy5601 143 KCRDEEVKKLTNAKHAVED-K-CKAAVELRKELTSVRSKNETL-----DSELKCRDEEVKKLTNAKHAVEDKCKLLSQ 213 (270)
Q Consensus 143 ~~~e~Eie~L~~qi~~LE~-~-~~eipel~~e~~~L~~~l~~l-----E~~l~~~d~el~~L~~e~e~l~~~~e~~~~ 213 (270)
......|+.+...+....= + +.-.--|+..+--|-++-++| +++|-.++.+|..-+...+++...-+.+..
T Consensus 187 e~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~d 264 (330)
T KOG2991|consen 187 EQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYD 264 (330)
T ss_pred HHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHH
Confidence 5554445444444432110 0 112233455554444444433 444555555555444444444443333333
No 401
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=55.81 E-value=95 Score=27.49 Aligned_cols=98 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred ccccccccchhHHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhh
Q psy5601 52 RVADSANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSV 131 (270)
Q Consensus 52 ~~~ss~n~~~~E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l 131 (270)
|+.-++.+-+.|..-..|...++.+--.+..+.+....+..+|..-+..-.....+-...-.
T Consensus 93 F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~------------------ 154 (192)
T PF11180_consen 93 FAQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQ------------------ 154 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHH
Q psy5601 132 RSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVEL 169 (270)
Q Consensus 132 ~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel 169 (270)
....|..+-.+....+..|+.+|..|+.. ...+|.|
T Consensus 155 --ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~~~~~l 191 (192)
T PF11180_consen 155 --EAQALEAERRAAQAQLRQLQRQVRQLQRQANEPIPSL 191 (192)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
No 402
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=55.52 E-value=1.7e+02 Score=26.98 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHH
Q psy5601 137 TLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVR 177 (270)
Q Consensus 137 ele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~ 177 (270)
-++.+|+..--+.+.|+.++..+.. ..+..++.+.+.|+
T Consensus 161 ~l~~eLqkr~~~v~~l~~q~~k~~~--~qv~~in~qlErLR 199 (289)
T COG4985 161 PLERELQKRLLEVETLRDQVDKMVE--QQVRVINSQLERLR 199 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4566666666677788888877766 33444445554443
No 403
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.46 E-value=94 Score=23.92 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=10.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi 156 (270)
.++.|..++..+..+++.|+..+
T Consensus 13 ~~e~~~~e~~~L~~~~~~L~~~~ 35 (100)
T PF01486_consen 13 QHEELQQEIAKLRKENESLQKEL 35 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 404
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=55.22 E-value=49 Score=30.54 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhHHHHH
Q psy5601 169 LRKELTSVRSKNETLDSELKCRDEEVK 195 (270)
Q Consensus 169 l~~e~~~L~~~l~~lE~~l~~~d~el~ 195 (270)
|..+...|..+|+.+|+++......|.
T Consensus 185 Lr~~y~~l~~~i~~lE~~VaeQ~~qL~ 211 (259)
T PF08657_consen 185 LRQRYNQLSNSIAYLEAEVAEQEAQLE 211 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444333333
No 405
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=54.78 E-value=90 Score=23.51 Aligned_cols=75 Identities=11% Similarity=0.236 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhh-HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHH
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAA-VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKC 208 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~ei-pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~ 208 (270)
.+......+......+..|...+..+... .+.. +.--...-....-+..++..+......+..+..+++.....+
T Consensus 6 ~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l 82 (123)
T PF02050_consen 6 ELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREEL 82 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666555433 0000 111123333444444554445544444444444444333333
No 406
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=54.73 E-value=14 Score=29.50 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=18.4
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 130 SVRSKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 130 ~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
+|+.=|+.+..++..+..++..|+.++..|..
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~ 53 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQA 53 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666666666666666655554
No 407
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=54.41 E-value=2.7e+02 Score=28.95 Aligned_cols=106 Identities=21% Similarity=0.195 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q psy5601 85 ANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCK 164 (270)
Q Consensus 85 a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~ 164 (270)
+=.+++..+|..+...| -..|-+++. ...++-......-.+++.++..|..|..++..++..|+-+|.++.
T Consensus 5 ~~~~~L~~eL~~le~~n---i~~l~~s~~------~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~ 75 (701)
T PF09763_consen 5 AFEERLSKELSALEAAN---IHSLLESEK------QVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNN 75 (701)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34566777777777766 234444443 455556777777789999999999999999999999999999866
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q psy5601 165 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN 199 (270)
Q Consensus 165 eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~ 199 (270)
.+-.-..=...|-.+|+.|=..+.=-...+..|..
T Consensus 76 ~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~ 110 (701)
T PF09763_consen 76 GLQVQSANQKLLLNELENLLDTLSIPEEHLEALRN 110 (701)
T ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhc
Confidence 66554444455666666655555444444554443
No 408
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.11 E-value=1.9e+02 Score=29.16 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=7.6
Q ss_pred HHHHHHHhhHHHHHHhhhhH
Q psy5601 172 ELTSVRSKNETLDSELKCRD 191 (270)
Q Consensus 172 e~~~L~~~l~~lE~~l~~~d 191 (270)
++..|..+.++|-.+-.+.+
T Consensus 81 ~N~~l~~eN~~L~~r~~~id 100 (472)
T TIGR03752 81 ENEALKAENERLQKREQSID 100 (472)
T ss_pred HHHHHHHHHHHHHHhhhhHH
Confidence 33333333333333333333
No 409
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=53.92 E-value=1.3e+02 Score=27.63 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=19.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5601 210 LLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGR 253 (270)
Q Consensus 210 ~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~k 253 (270)
.+.+++..+...|..|.+.++.....++.+....+.+-..+|.+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443
No 410
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=53.81 E-value=1.5e+02 Score=28.51 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHH
Q psy5601 167 VELRKELTSVRSKNETLDSELKCRDEE 193 (270)
Q Consensus 167 pel~~e~~~L~~~l~~lE~~l~~~d~e 193 (270)
++..+.++.|+..|.+....+.+.+.-
T Consensus 64 ~e~~~~i~~L~~~Ik~r~~~l~DmEa~ 90 (330)
T PF07851_consen 64 AEERELIEKLEEDIKERRCQLFDMEAF 90 (330)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 344455566666666655555555533
No 411
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=53.73 E-value=85 Score=27.28 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHH
Q psy5601 145 RDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETL 183 (270)
Q Consensus 145 ~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~l 183 (270)
++.||..|..+|..|+.--+.+..|+..+..|..+|++.
T Consensus 125 L~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 125 LEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666654455555666666555555554
No 412
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=53.17 E-value=1e+02 Score=24.87 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy5601 92 KQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK 162 (270)
Q Consensus 92 ~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~ 162 (270)
.++.++..+...|+.-+.++|. +-. ..+..+-.+++++...+...+.-+..|+..|.+.++.
T Consensus 8 ~q~~~l~~~v~~lRed~r~SEd------rsa---~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpV 69 (112)
T PF07439_consen 8 QQLGTLNAEVKELREDIRRSED------RSA---ASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPV 69 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------Hhh---hhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccch
Confidence 4566777777777777777765 222 4456666788888888888887787788877665553
No 413
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=51.35 E-value=39 Score=31.18 Aligned_cols=21 Identities=10% Similarity=0.335 Sum_probs=11.5
Q ss_pred hchHHHHHHHHHHHHHHHHHH
Q psy5601 133 SKNETLDSELKCRDEEVKKLT 153 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~ 153 (270)
..|+.+++.+...+..++.+.
T Consensus 194 ~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 194 NSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455566666655555554443
No 414
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=51.33 E-value=1.5e+02 Score=30.89 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=25.4
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601 163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 205 (270)
Q Consensus 163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~ 205 (270)
+..++.+...++..-.++++++..+..-+..|..+...++.+.
T Consensus 29 ~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE 71 (701)
T PF09763_consen 29 EKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIE 71 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666655555554444333
No 415
>KOG2751|consensus
Probab=51.18 E-value=2.6e+02 Score=27.82 Aligned_cols=47 Identities=26% Similarity=0.399 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhh--hhhhHHHHHHHHHHHHhhHHH
Q psy5601 137 TLDSELKCRDEEVKKLTNAKHAVEDK--CKAAVELRKELTSVRSKNETL 183 (270)
Q Consensus 137 ele~eL~~~e~Eie~L~~qi~~LE~~--~~eipel~~e~~~L~~~l~~l 183 (270)
.+++++..++.|++.-.+=+..|+.. .-.++.+..+...+..+=.+|
T Consensus 147 ~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L 195 (447)
T KOG2751|consen 147 KLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERL 195 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHH
Confidence 44444444555555544444455544 223444444444444443333
No 416
>KOG3647|consensus
Probab=50.90 E-value=2.2e+02 Score=26.80 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 202 HAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 202 e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
..+..++..+-+.-++|..+|+.-..+|+..+++.+ .|+..|=-..+++...-.+|-++
T Consensus 122 q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle-------~LqsiRP~~MdEyE~~EeeLqkl 180 (338)
T KOG3647|consen 122 QSSRAQLNNVASDEAALGSKIERRKAELERTRKRLE-------ALQSIRPAHMDEYEDCEEELQKL 180 (338)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcchHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555444 34444444444444444444433
No 417
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=50.16 E-value=94 Score=22.38 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELK 188 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~ 188 (270)
....+..+|......+..+......|... ....|.+...+..|......+...+.
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~ 97 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVE 97 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666555222 23344455555544444444433333
No 418
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.08 E-value=1.2e+02 Score=23.40 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 83 STANVEEWKKQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele 112 (270)
...++..|..++..++.++..|...+.-+.
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~ 39 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLM 39 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345678899999999999999988876654
No 419
>KOG4787|consensus
Probab=50.00 E-value=3.2e+02 Score=28.52 Aligned_cols=193 Identities=13% Similarity=0.081 Sum_probs=93.5
Q ss_pred hhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHH---------HH
Q psy5601 69 LKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNET---------LD 139 (270)
Q Consensus 69 Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~ee---------le 139 (270)
-.+.|+.+..-+.+ .+|...+..++.+...|.-|-.+|.++++.|+.+..-..+ ...-+.+..++. +-
T Consensus 325 ~~D~N~~~Q~~~~~--~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~-~K~~E~K~~~~~~~~~~r~i~~~ 401 (852)
T KOG4787|consen 325 RCDGNAHLQLELAE--SQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAH-SKAGEFKLTPEMEKDMSKMIVTI 401 (852)
T ss_pred ccCCcHHHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHH-HHhhhhhcChHhHhHHHHHHHHH
Confidence 45667666654443 4577888888888888999999999999888765533322 111111111111 11
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhhhhHH----HHHHHHHHHHhhHHHHHHhhhhH-HHHHHHHHh-------hHHHHHH
Q psy5601 140 SELKCRDEEVKKLTNAKHAVEDKCKAAVE----LRKELTSVRSKNETLDSELKCRD-EEVKKLTNA-------KHAVEDK 207 (270)
Q Consensus 140 ~eL~~~e~Eie~L~~qi~~LE~~~~eipe----l~~e~~~L~~~l~~lE~~l~~~d-~el~~L~~e-------~e~l~~~ 207 (270)
..+.....+...++.++.--+..|...-+ -+.++-.+...+.++-+-+.+-| .-+..|+.+ |-.|+.+
T Consensus 402 ~~~~~~~~~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~R 481 (852)
T KOG4787|consen 402 SELERKNLELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNER 481 (852)
T ss_pred HHHHHhcccHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 11112222233333333211111111100 01111111112222211111100 011112222 2223322
Q ss_pred HHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601 208 CKLL-------SQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI 264 (270)
Q Consensus 208 ~e~~-------~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l 264 (270)
+..+ .+=++.....|+-|+.++.=++.=-..+..|+..+..-++++-..+..|++-+
T Consensus 482 L~K~~R~q~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~~ 545 (852)
T KOG4787|consen 482 LNKLHRKQVRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAAVE 545 (852)
T ss_pred HhHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHHHh
Confidence 2222 22233377888888888888777777777888887777777777776666544
No 420
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=49.41 E-value=1.1e+02 Score=22.84 Aligned_cols=18 Identities=11% Similarity=-0.053 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHhhH
Q psy5601 140 SELKCRDEEVKKLTNAKH 157 (270)
Q Consensus 140 ~eL~~~e~Eie~L~~qi~ 157 (270)
..|..+..|.=.|+=+|-
T Consensus 7 ~~i~~L~KENF~LKLrI~ 24 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIY 24 (75)
T ss_pred HHHHHHHHhhhhHHHHHH
Confidence 333333333333333333
No 421
>KOG4421|consensus
Probab=49.24 E-value=2.2e+02 Score=28.07 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q psy5601 85 ANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKK 151 (270)
Q Consensus 85 a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~ 151 (270)
++.+.++.-+-.-++..+.|+..+....+ .|.-++.++.+|.-+-++|+..+...+-|+-.
T Consensus 29 aqakvlke~viee~gk~~kl~eelk~k~a------~irrieaendsl~frndql~rrvenfqfe~pt 89 (637)
T KOG4421|consen 29 AQAKVLKEAVIEEQGKEAKLREELKQKAA------SIRRIEAENDSLGFRNDQLERRVENFQFEIPT 89 (637)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHH------HHHHHHHhccccccchHHHHHHHHHhccCCCC
Confidence 34444444444556666777777776666 66677788888888888888877766655543
No 422
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=48.13 E-value=1.9e+02 Score=26.65 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=4.0
Q ss_pred hhHHHHHHhhh
Q psy5601 179 KNETLDSELKC 189 (270)
Q Consensus 179 ~l~~lE~~l~~ 189 (270)
.+--|-..+++
T Consensus 24 QvlTLqcQLRD 34 (277)
T PF15030_consen 24 QVLTLQCQLRD 34 (277)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 423
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=48.06 E-value=16 Score=28.85 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
++.++..|+.+|.+....++.+...|..|+..+
T Consensus 49 ~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 49 LEEKNEQLEKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554444444444433
No 424
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=47.95 E-value=2.5e+02 Score=26.59 Aligned_cols=119 Identities=12% Similarity=0.153 Sum_probs=53.3
Q ss_pred HhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh----hHH
Q psy5601 128 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA----KHA 203 (270)
Q Consensus 128 ~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e----~e~ 203 (270)
-.+....+++|...+..|.. ..|+..+..+. ..|++.+..++.+..+|+.+...+.+....+..-..- +-.
T Consensus 50 A~~fA~~ld~~~~kl~~Ms~--~ql~~~~~k~~---~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n 124 (301)
T PF06120_consen 50 AIEFADSLDELKEKLKEMSS--TQLRANIAKAE---ESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIIN 124 (301)
T ss_pred HHHHHHhhHHHHHHHHhcCH--HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHH
Confidence 34455566666666665431 12233332222 2445555555555555555555544332221110000 000
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA 251 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld 251 (270)
--..+..+..+++.+...+...+.+|+...........-|..+.+++-
T Consensus 125 ~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 125 HLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011233445555555555555555555555555555555555544444
No 425
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=47.36 E-value=2.5e+02 Score=26.44 Aligned_cols=113 Identities=21% Similarity=0.257 Sum_probs=51.4
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhch-------HHHHHHHH-HHHH
Q psy5601 76 LTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKN-------ETLDSELK-CRDE 147 (270)
Q Consensus 76 l~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~-------eele~eL~-~~e~ 147 (270)
+..-+..+.........+...++.++.+.......++.-|.+ |...+..+.... +.-..++. ..+.
T Consensus 41 ~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRE------LQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~ 114 (309)
T PF09728_consen 41 LQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRE------LQKQNKKLKEESKRRAREEEEKRKELSEKFQA 114 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555555555566666555555555543332 223332222221 11112221 1233
Q ss_pred HHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q psy5601 148 EVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKL 197 (270)
Q Consensus 148 Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L 197 (270)
-|..+..++++- .+.-+.+..+...|+.++..+=..+.-.+..+..+
T Consensus 115 ~L~dIq~~~ee~---~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~ 161 (309)
T PF09728_consen 115 TLKDIQAQMEEQ---SERNIKLREENEELREKLKSLIEQYELREEHFEKL 161 (309)
T ss_pred HHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444221 33444566677777777776666655444444433
No 426
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=47.35 E-value=34 Score=24.59 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi 156 (270)
+|++|+..|..++.||.+++..+
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777776666
No 427
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.80 E-value=3.6e+02 Score=28.12 Aligned_cols=155 Identities=12% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhhhhhh--HHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHH
Q psy5601 74 LRLTSAL--QESTANVEEWKKQLQ-----------AYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDS 140 (270)
Q Consensus 74 ~rl~~al--~Es~a~v~~wk~qL~-----------~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~ 140 (270)
.+++.|+ +.--++++.|+.|+. ++..-..++.+.+..-..+-++..-+...+++..-++.=+...-+
T Consensus 327 ~~~~~A~e~~~~~a~~ea~k~Q~dl~t~~~k~i~~t~~~~r~~~~ak~ld~sK~~~~~~~~d~t~d~id~i~~l~k~~na 406 (758)
T COG4694 327 NLTKIALERLDEIACTEAWKDQTDLDTENLKNIIETLRSKRLANQAKMLDKSKEMSRNFKLDSTKDEIDAIKDLIKKANA 406 (758)
T ss_pred cccHHHHHHHhHHHHHHhhhhhhcccchhhhhHHHHHHHHHHHHHHHhhccchhhccccccccchhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhHHhhhh--hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Q psy5601 141 ELKCRDEEVKKLTNAKHAVEDK--CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAEL 218 (270)
Q Consensus 141 eL~~~e~Eie~L~~qi~~LE~~--~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~l 218 (270)
++-.+..-|.+.+++..+..+. -.-..+.++.+.+.. ...-+|+.+.+++.++...+.+++.|+.++..++.=+...
T Consensus 407 ~V~~~N~ri~nf~k~~~~sk~~le~~~v~~~~~~VQe~~-~Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~ie~~l~~~ 485 (758)
T COG4694 407 QVVNHNERIKNFEKQKKSSKEQLEKFLVNEFKSDVQEYN-KYCGLEKKINNLEKEIKNNQEEVKKLSNEIKEIEKFLVSI 485 (758)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q ss_pred HHHHHHHHHHH
Q psy5601 219 QAAISLVQAQL 229 (270)
Q Consensus 219 E~~i~~LE~~L 229 (270)
.--+..+...|
T Consensus 486 ~~~vke~nq~l 496 (758)
T COG4694 486 KPIVKEINQTL 496 (758)
T ss_pred hhhHHHHHHHH
No 428
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=46.44 E-value=69 Score=28.24 Aligned_cols=50 Identities=12% Similarity=0.251 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHH
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDS 185 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~ 185 (270)
.+..++..+..+..||...+.+|.-||- .-||.+.+-+-.++..|++.|.
T Consensus 144 ~lA~~e~~~~~L~~eI~~T~RRVNALE~--vvIP~l~~~ik~I~~~LeE~ER 193 (209)
T TIGR00309 144 ELAEIETTIRLLAEEIEITKRRVNALEH--VIIPRLKNTIKYINMRLDEMDR 193 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHhHHhH
Confidence 5667888888899999999999988887 7899999999988888887654
No 429
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=46.38 E-value=2.1e+02 Score=25.21 Aligned_cols=64 Identities=11% Similarity=0.184 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5601 167 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLD 230 (270)
Q Consensus 167 pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Le 230 (270)
..+-+.+..|+.+|+++|-.+.++=..+..-.....-+..++-.+.+++..++.++.-+=+-|+
T Consensus 75 arvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 75 ANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555554444433222211111222333444444444444444444433333
No 430
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=46.10 E-value=2.3e+02 Score=25.63 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 189 CRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 189 ~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
.+...|++....+.++..-+..+......++.-+..-+..|++.......+......+.+.+
T Consensus 182 ~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L 243 (264)
T PF06008_consen 182 AIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETL 243 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444445444444444444444444444444443333333333333
No 431
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=46.00 E-value=1.9e+02 Score=24.70 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy5601 140 SELKCRDEEVKKL 152 (270)
Q Consensus 140 ~eL~~~e~Eie~L 152 (270)
++|...+++..+|
T Consensus 56 ~~LgrveEetkrL 68 (159)
T PF04949_consen 56 AQLGRVEEETKRL 68 (159)
T ss_pred HHHhHHHHHHHHH
Confidence 3333334433333
No 432
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=45.81 E-value=1.3e+02 Score=22.67 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=21.1
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601 131 VRSKNETLDSELKCRDEEVKKLTNAKHAV 159 (270)
Q Consensus 131 l~~~~eele~eL~~~e~Eie~L~~qi~~L 159 (270)
+...+++|+.+|..++..+...+.-+..+
T Consensus 50 i~~s~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 50 IDRSVEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788888888888888887766665433
No 433
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=45.61 E-value=28 Score=27.74 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q psy5601 135 NETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 135 ~eele~eL~~~e~Eie~L~~qi 156 (270)
+.++..=|..+..++..|..++
T Consensus 20 ~~eVD~fl~~l~~~~~~l~~e~ 41 (131)
T PF05103_consen 20 PDEVDDFLDELAEELERLQREN 41 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 434
>PRK00106 hypothetical protein; Provisional
Probab=45.48 E-value=3.5e+02 Score=27.65 Aligned_cols=94 Identities=10% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHhhhhHHHH-HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5601 176 VRSKNETLDSELKCRDEEV-KKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRV 254 (270)
Q Consensus 176 L~~~l~~lE~~l~~~d~el-~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki 254 (270)
+++.....+........+. .++.....++..++..-..++...|.++..-+..|+.....++.-+.+|......++.+.
T Consensus 59 ~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~re 138 (535)
T PRK00106 59 KKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKS 138 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhc
Q psy5601 255 AELATIHREINTALQ 269 (270)
Q Consensus 255 ~eL~el~~~l~~~~~ 269 (270)
.+|......+..+++
T Consensus 139 eeLee~~~~~~~~~~ 153 (535)
T PRK00106 139 KHIDEREEQVEKLEE 153 (535)
T ss_pred HHHHHHHHHHHHHHH
No 435
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=45.36 E-value=34 Score=27.07 Aligned_cols=6 Identities=33% Similarity=0.423 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy5601 100 ENQKLK 105 (270)
Q Consensus 100 en~rL~ 105 (270)
+.+.|.
T Consensus 23 ElEeLT 28 (100)
T PF06428_consen 23 ELEELT 28 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 436
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=45.10 E-value=1.3e+02 Score=24.78 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5601 96 AYKEENQKLKTKYIELE 112 (270)
Q Consensus 96 ~l~een~rL~~~i~Ele 112 (270)
+|-+++++....|..++
T Consensus 71 ALLDElE~~~~~i~~~~ 87 (139)
T PF13935_consen 71 ALLDELERAQQRIAELE 87 (139)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 437
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=44.58 E-value=1.5e+02 Score=22.95 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=25.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 192 EEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 192 ~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e 248 (270)
.++..+...+-.+..++..+.++..++......+..++..+..-......-+..|.+
T Consensus 24 ~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 24 KELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333333444444444555555555555555554444444444433333333333
No 438
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=44.45 E-value=56 Score=28.70 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHH
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDS 185 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~ 185 (270)
.+..++..+..+..||..-+.+|.-||- .-||.+..-+-.++..|++.|.
T Consensus 144 ~lA~~e~~~~~L~~ei~kT~RRVNALE~--vvIP~le~~ik~I~~~LeE~ER 193 (204)
T PRK00373 144 ELAEVEKTIQLLADEIEKTKRRVNALEY--VIIPRLEETIKYIKMKLDEMER 193 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccccchHHHHHHHHHHHhhhhH
Confidence 5667888888899999999999988887 7889999999888888887654
No 439
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=44.23 E-value=2e+02 Score=24.34 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLD 230 (270)
Q Consensus 218 lE~~i~~LE~~Le 230 (270)
+..+|..|+....
T Consensus 56 Lk~~i~~lq~~~~ 68 (155)
T PF06810_consen 56 LKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 440
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=43.85 E-value=1.6e+02 Score=23.37 Aligned_cols=8 Identities=25% Similarity=0.646 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy5601 147 EEVKKLTN 154 (270)
Q Consensus 147 ~Eie~L~~ 154 (270)
.++..|.+
T Consensus 13 ~~i~~l~~ 20 (129)
T cd00584 13 QEIEELQQ 20 (129)
T ss_pred HHHHHHHH
Confidence 33333333
No 441
>KOG4572|consensus
Probab=43.70 E-value=4.7e+02 Score=28.59 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 121 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 121 ~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
+.+++..+...+.++++++.++.++-.+|+.+.+.|
T Consensus 997 ~kefE~~mrdhrselEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 997 EKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667777777777777776666666665555
No 442
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.54 E-value=2e+02 Score=28.52 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhh-hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q psy5601 121 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCK-AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN 199 (270)
Q Consensus 121 ~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~-eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~ 199 (270)
+-+|..++.++...++.|.+.......+|.+ .-.++. .++.+..++..|...|..++..+..++.+++.+..
T Consensus 31 ~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~-------~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll 103 (429)
T COG0172 31 LLELDEERRKLLRELEELQAERNELSKEIGR-------ALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLL 103 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4444455555555666555555544444432 111111 46778888888888888888888888888888776
Q ss_pred hh
Q psy5601 200 AK 201 (270)
Q Consensus 200 e~ 201 (270)
.+
T Consensus 104 ~i 105 (429)
T COG0172 104 TI 105 (429)
T ss_pred hC
Confidence 63
No 443
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=43.46 E-value=1.9e+02 Score=23.92 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q psy5601 238 AQRRIIDTLNHQLAGRVAELATIH 261 (270)
Q Consensus 238 ~~~~El~~l~e~ld~ki~eL~el~ 261 (270)
..+.++..|.-.+...-.-+...+
T Consensus 81 ~~q~EldDLL~ll~Dle~K~~kyk 104 (136)
T PF04871_consen 81 EAQSELDDLLVLLGDLEEKRKKYK 104 (136)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHH
Confidence 344455554444443333333333
No 444
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=43.19 E-value=1.4e+02 Score=22.50 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy5601 222 ISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHRE 263 (270)
Q Consensus 222 i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~ 263 (270)
+++|...|.+.+.+.+ .|..+.+.+..++..+++++..
T Consensus 7 Nk~L~~kL~~K~eEI~----rLn~lv~sLR~KLiKYt~Lnkk 44 (76)
T PF11544_consen 7 NKELKKKLNDKQEEID----RLNILVGSLRGKLIKYTELNKK 44 (76)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 3333444444444444444433
No 445
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=43.18 E-value=1.3e+02 Score=27.22 Aligned_cols=63 Identities=14% Similarity=0.229 Sum_probs=33.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601 81 QESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE 160 (270)
++.+.+.--.+..|..++....||..-+.... .. ..|-.++.+|...+.+|+.++.++..|.
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~----~~--------------~d~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAK----TV--------------EDLLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666554322 11 1334555555555555555555554444
Q ss_pred h
Q psy5601 161 D 161 (270)
Q Consensus 161 ~ 161 (270)
.
T Consensus 190 ~ 190 (262)
T PF14257_consen 190 D 190 (262)
T ss_pred H
Confidence 3
No 446
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=43.12 E-value=1.4e+02 Score=30.72 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhhH
Q psy5601 144 CRDEEVKKLTNAKH 157 (270)
Q Consensus 144 ~~e~Eie~L~~qi~ 157 (270)
.++.+|+.|..++.
T Consensus 567 ~~e~~i~~le~~~~ 580 (638)
T PRK10636 567 RLEKEMEKLNAQLA 580 (638)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 447
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=43.09 E-value=1.2e+02 Score=21.39 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q psy5601 95 QAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVK 150 (270)
Q Consensus 95 ~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie 150 (270)
.+-+.--.+-...|.+++. .+..|..++..|...+..|...+..+..++.
T Consensus 15 ~AAr~~R~RKk~~~~~Le~------~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 15 EAARRSRQRKKQYIEELEE------KVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 448
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=43.01 E-value=2.4e+02 Score=27.74 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhhHHH
Q psy5601 169 LRKELTSVRSKNETL 183 (270)
Q Consensus 169 l~~e~~~L~~~l~~l 183 (270)
+..+...|...+..+
T Consensus 332 l~~~~~~l~~~~~~~ 346 (451)
T PF03961_consen 332 LKEKLEELEEELEEL 346 (451)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 449
>PLN02678 seryl-tRNA synthetase
Probab=42.76 E-value=2.1e+02 Score=28.48 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=39.8
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q psy5601 78 SALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKK 151 (270)
Q Consensus 78 ~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~ 151 (270)
..+......-.+...+++.++.+...+..+|..+...+. ...++..+...++..+..++.++..++.++..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~---~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKE---DATELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777788888888888888888876543221 12223333334444444444444444444433
No 450
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=42.70 E-value=1.8e+02 Score=23.56 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy5601 217 ELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHRE 263 (270)
Q Consensus 217 ~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~ 263 (270)
.++.-+..++..+..+....+.++.++..=-+........|..+|.-
T Consensus 69 ~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t 115 (132)
T PF10392_consen 69 ELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQT 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666666666666666666666654
No 451
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=42.69 E-value=3.2e+02 Score=26.38 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHH
Q psy5601 137 TLDSELK-CRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQE 214 (270)
Q Consensus 137 ele~eL~-~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r 214 (270)
.|...+. .+..-...|+.+......- ...|.+...-...|.-.+.....+|.+.+..|..|...+.+...-+.-++.|
T Consensus 222 ~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTR 301 (384)
T PF03148_consen 222 QLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTR 301 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601 215 NAE-----------------LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI 264 (270)
Q Consensus 215 ~~~-----------------lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l 264 (270)
... |-..|..|..-+..++..+...+..+..|...+..+-.+|..-+..|
T Consensus 302 L~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL 368 (384)
T PF03148_consen 302 LENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSL 368 (384)
T ss_pred HhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 452
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.35 E-value=51 Score=23.67 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=13.9
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601 132 RSKNETLDSELKCRDEEVKKLTNAKHAV 159 (270)
Q Consensus 132 ~~~~eele~eL~~~e~Eie~L~~qi~~L 159 (270)
...+..++.++.....++..|+.++..|
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555443
No 453
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=42.33 E-value=2.2e+02 Score=24.37 Aligned_cols=25 Identities=12% Similarity=0.472 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 88 EEWKKQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 88 ~~wk~qL~~l~een~rL~~~i~Ele 112 (270)
.-|..=+........+|+..+..+.
T Consensus 4 ~a~~~~~~rr~R~~~rL~~~L~~~r 28 (158)
T PF09486_consen 4 SAWRTLIQRRRRRERRLRARLAAQR 28 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666666555544
No 454
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.30 E-value=87 Score=23.59 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q psy5601 135 NETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 135 ~eele~eL~~~e~Eie~L~~qi 156 (270)
...+......+.--+...+..|
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i 44 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAI 44 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555
No 455
>KOG1236|consensus
Probab=42.26 E-value=8.6 Score=38.41 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=15.6
Q ss_pred ccccccchhhhhHHHHH-HHHHhh
Q psy5601 7 SQKFGQWSDIRANTVSL-VQAQLD 29 (270)
Q Consensus 7 s~~~gqwad~~an~~~~-~~~~l~ 29 (270)
==|+||||.+|------ +|.+|+
T Consensus 135 FIKLGQWAsTR~DlFs~afC~qLS 158 (565)
T KOG1236|consen 135 FIKLGQWASTRRDLFSKAFCAQLS 158 (565)
T ss_pred eEEecccccccccccCHHHHHHHH
Confidence 34899999999753222 277776
No 456
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=42.07 E-value=4.3e+02 Score=27.70 Aligned_cols=7 Identities=0% Similarity=-0.007 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy5601 223 SLVQAQL 229 (270)
Q Consensus 223 ~~LE~~L 229 (270)
..|+++.
T Consensus 373 ~~L~R~~ 379 (726)
T PRK09841 373 LRLSRDV 379 (726)
T ss_pred HHHHHHH
Confidence 3333333
No 457
>PF14992 TMCO5: TMCO5 family
Probab=41.88 E-value=3e+02 Score=25.81 Aligned_cols=41 Identities=32% Similarity=0.331 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhch
Q psy5601 89 EWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKN 135 (270)
Q Consensus 89 ~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~ 135 (270)
..+..++.+-+.|..|=.+|.+.+. .+..|+.+++.....+
T Consensus 8 dle~d~Q~ldE~Nq~lL~ki~~~E~------~iq~Le~Eit~~~~~~ 48 (280)
T PF14992_consen 8 DLEKDEQRLDEANQSLLQKIQEKEG------AIQSLEREITKMDHIA 48 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcccc
Confidence 3456777888899999999998886 6677777776665433
No 458
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=41.87 E-value=2.9e+02 Score=28.35 Aligned_cols=86 Identities=16% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601 81 QESTANVEEWKKQLQAY--KEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA 158 (270)
Q Consensus 81 ~Es~a~v~~wk~qL~~l--~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~ 158 (270)
+........|+.....+ +.....++.+|.++..+.-..+ .++.+....+++++.++.+....+..++.++
T Consensus 171 ~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p------~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l-- 242 (555)
T TIGR03545 171 KSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNP------LELQKIKEEFDKLKKEGKADKQKIKSAKNDL-- 242 (555)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhHHHHH
Q psy5601 159 VEDKCKAAVELRKELTSVRSKNETLDS 185 (270)
Q Consensus 159 LE~~~~eipel~~e~~~L~~~l~~lE~ 185 (270)
......++..+.+++.
T Consensus 243 -----------~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 243 -----------QNDKKQLKADLAELKK 258 (555)
T ss_pred -----------HHhHHHHHHHHHHHHh
No 459
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=41.72 E-value=2.2e+02 Score=24.29 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q psy5601 96 AYKEENQKLKTKY 108 (270)
Q Consensus 96 ~l~een~rL~~~i 108 (270)
++.+++++-+..|
T Consensus 38 AkEeeIErkKmeV 50 (159)
T PF04949_consen 38 AKEEEIERKKMEV 50 (159)
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444333
No 460
>PRK11415 hypothetical protein; Provisional
Probab=41.63 E-value=1.3e+02 Score=22.27 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=32.6
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhh-hhHHHHHHHHHhhHHHHHHH
Q psy5601 155 AKHAVEDKCKAAVELRKELTSVRSKNETLDSELK-CRDEEVKKLTNAKHAVEDKC 208 (270)
Q Consensus 155 qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~-~~d~el~~L~~e~e~l~~~~ 208 (270)
.|..|...+..+..|-++...|...|.++|.... .-+.++..|+.+.=.+.++|
T Consensus 8 ~I~~Lk~~D~~F~~L~~~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI 62 (74)
T PRK11415 8 LISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEM 62 (74)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHH
Confidence 3444555556667777777777777777777543 23566777766643444443
No 461
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=41.61 E-value=2.3e+02 Score=24.43 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy5601 208 CKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTAL 268 (270)
Q Consensus 208 ~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~~ 268 (270)
++.+......|...|..+ ..-.....+...++.++..+..+.-..+..|.++|+.|.+++
T Consensus 4 ~~~L~~~d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 4 AEDLIEADDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=40.21 E-value=1.5e+02 Score=29.14 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhh
Q psy5601 120 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCR 190 (270)
Q Consensus 120 ~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~ 190 (270)
.+-++..++.++...++.|.++......+|..+.+.-+..+.--.++..+++++..+...+..++..+...
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 463
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=40.14 E-value=3.5e+02 Score=26.04 Aligned_cols=140 Identities=15% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q psy5601 86 NVEEWKKQLQAY-KEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCK 164 (270)
Q Consensus 86 ~v~~wk~qL~~l-~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~ 164 (270)
.|..+..++..| ....+.+..++..+.. .+..|...+....... ..+..|..|-.-+..++.-+.
T Consensus 247 ~l~~L~~~lslL~~~~Ld~i~~rl~~L~~------~~~~l~~~~~~~~~~~--------~~e~KI~eLy~~l~~~~~~~~ 312 (388)
T PF04912_consen 247 ALNELERQLSLLDPAKLDSIERRLKSLLS------ELEELAEKRKEAKEDA--------EQESKIDELYEILPRWDPYAP 312 (388)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHH------HHHHHHhccccccccc--------cchhHHHHHHHHHHHHHHHhh
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 165 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIID 244 (270)
Q Consensus 165 eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~ 244 (270)
.+|.+ +.|| .-|+.|=.+.......+..++.....+...+...+.-|...+.....-..-+.
T Consensus 313 ~lP~l----------v~RL--------~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~ 374 (388)
T PF04912_consen 313 SLPSL----------VERL--------KTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIE 374 (388)
T ss_pred hhhHH----------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHH
Q psy5601 245 TLNHQLAGRVAEL 257 (270)
Q Consensus 245 ~l~e~ld~ki~eL 257 (270)
.-...++.+|..|
T Consensus 375 ~n~~~le~Ri~~L 387 (388)
T PF04912_consen 375 KNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHhcc
No 464
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=40.10 E-value=1.8e+02 Score=27.10 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred HhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy5601 66 LANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCR 145 (270)
Q Consensus 66 l~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~ 145 (270)
|+|..++|..-.-.|.=.+.-+=..+.+++.|..+-..|..++.-+.. .++.+.++|..+
T Consensus 45 lftfss~ntervrklh~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~--------------------~~~~~r~~~~~~ 104 (389)
T PF06216_consen 45 LFTFSSNNTERVRKLHIISDYIYNKEFERQSYSNEWISLNDQVSHLQH--------------------QNSEQRQQIREM 104 (389)
T ss_pred heeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q psy5601 146 DEEVKKLTN 154 (270)
Q Consensus 146 e~Eie~L~~ 154 (270)
.+-|+-||.
T Consensus 105 ~~~~eglre 113 (389)
T PF06216_consen 105 REIIEGLRE 113 (389)
T ss_pred HHHHHhhhh
No 465
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=39.33 E-value=1.5e+02 Score=21.53 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy5601 208 CKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTAL 268 (270)
Q Consensus 208 ~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~~ 268 (270)
++....+....+.++..++.++..++.+....+..+..+.+.+++....+.=+-+-+..++
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiGai 61 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIGAI 61 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.24 E-value=2.1e+02 Score=23.35 Aligned_cols=122 Identities=21% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHH
Q psy5601 65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKC 144 (270)
Q Consensus 65 el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~ 144 (270)
+|..|=++...+..-+..... |..+...++.+...|..|....-.++ .....++..+...-..+..
T Consensus 8 eL~~Ll~d~~~l~~~v~~l~~-~~~~~~~~~~l~~~n~~lAe~nL~~~-------------~~l~~~r~~l~~~~~~~~~ 73 (150)
T PF07200_consen 8 ELQELLSDEEKLDAFVKSLPQ-VQELQQEREELLAENEELAEQNLSLE-------------PELEELRSQLQELYEELKE 73 (150)
T ss_dssp HHHHHHHH-HHHHHHGGGGS---HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhcccc-------------hHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhHHhhhh---hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601 145 RDEEVKKLTNAKHAVEDK---CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 200 (270)
Q Consensus 145 ~e~Eie~L~~qi~~LE~~---~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e 200 (270)
+..+...+..+...+-.. +.-...|...+....+.-+.+-...-+-+.++.+.-.+
T Consensus 74 L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~ 132 (150)
T PF07200_consen 74 LESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEESEELAEEFLDGEIDVDDFLKQ 132 (150)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
No 467
>PF14992 TMCO5: TMCO5 family
Probab=39.20 E-value=3.3e+02 Score=25.53 Aligned_cols=137 Identities=9% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHH
Q psy5601 124 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA 203 (270)
Q Consensus 124 le~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~ 203 (270)
++.....++..-..+=..|++++..|.+|...| .....+-.+-+....-+..-+..+.+++.+...|....+-
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Ei-------t~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~ 81 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREI-------TKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEH 81 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHh
Q ss_pred HHHHHHHHhHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601 204 VEDKCKLLSQENAE------------------LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREIN 265 (270)
Q Consensus 204 l~~~~e~~~~r~~~------------------lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~ 265 (270)
+..-+++++.+... .+..++-+.......+.....+..+.......-......+..+...|.
T Consensus 82 l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~ 161 (280)
T PF14992_consen 82 LSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLR 161 (280)
T ss_pred hhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh
Q psy5601 266 TA 267 (270)
Q Consensus 266 ~~ 267 (270)
++
T Consensus 162 rm 163 (280)
T PF14992_consen 162 RM 163 (280)
T ss_pred HH
No 468
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=38.86 E-value=2.9e+02 Score=27.04 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 178 SKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQE----NAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 178 ~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r----~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
..|-.+..+.+....++..|+.+...++.++-..... ..++..++..+..++..++.....++.++..+.-.+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 469
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=38.52 E-value=2.8e+02 Score=24.41 Aligned_cols=97 Identities=11% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601 173 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAG 252 (270)
Q Consensus 173 ~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ 252 (270)
++.|..++.+.+.-+......|..-+....-...-..........+..-+......+............+|......++.
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLea 148 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEA 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy5601 253 RVAELATIHREINTALQ 269 (270)
Q Consensus 253 ki~eL~el~~~l~~~~~ 269 (270)
-..-+..|++.|.....
T Consensus 149 Ak~Rve~L~~QL~~Ar~ 165 (188)
T PF05335_consen 149 AKRRVEELQRQLQAARA 165 (188)
T ss_pred HHHHHHHHHHHHHHHHH
No 470
>PF14282 FlxA: FlxA-like protein
Probab=38.11 E-value=1.8e+02 Score=22.87 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHH----HhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy5601 163 CKAAVELRKELTSVRSKNETLDS----ELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE 217 (270)
Q Consensus 163 ~~eipel~~e~~~L~~~l~~lE~----~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~ 217 (270)
++.|..|..++..|...|..|.. -...+..-+..|+.+|..|...|..+......
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>KOG3647|consensus
Probab=37.98 E-value=3.5e+02 Score=25.47 Aligned_cols=105 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy5601 138 LDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE 217 (270)
Q Consensus 138 le~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~ 217 (270)
|+..|++...+++.++.++.+..+ .-..|-+.++.-+.+++++-.++..+..--+..+.+-+...++++.+-.+--.
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvas---dea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l 186 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVAS---DEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFL 186 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDT 245 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~ 245 (270)
-=.-+.-|+.+|+..-........+++.
T Consensus 187 ~f~nl~yL~~qldd~~rse~~rqeeaen 214 (338)
T KOG3647|consen 187 RFHNLDYLKSQLDDRTRSEPIRQEEAEN 214 (338)
T ss_pred HHhhHHHHHHHHHHHhhhhHHHHHHHHh
No 472
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=37.91 E-value=62 Score=27.96 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 201 KHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 201 ~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
++++..+...+..||+=||..| .+-+.++....+++.|+..|+.++
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
No 473
>COG5570 Uncharacterized small protein [Function unknown]
Probab=37.60 E-value=1e+02 Score=21.73 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5601 175 SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQ 228 (270)
Q Consensus 175 ~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~ 228 (270)
.+...|..|+++-.+++.+|.+....=..---.+..+..|+--+...|+.|..+
T Consensus 2 aieshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 2 AIESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred cHHHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
No 474
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=37.59 E-value=2.3e+02 Score=23.18 Aligned_cols=159 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHH-HHHHHHHHHHHhhHHhhhh-hhhh
Q psy5601 89 EWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELK-CRDEEVKKLTNAKHAVEDK-CKAA 166 (270)
Q Consensus 89 ~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~-~~e~Eie~L~~qi~~LE~~-~~ei 166 (270)
++...+..+......+...|...-. +-...+...++.+...|. ....-...|......+... ...+
T Consensus 2 ~l~~~~~~l~~~~~~l~~~l~~~~~------------~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~ 69 (202)
T PF01442_consen 2 KLDDRLDSLSSRTEELEERLEELSD------------EIADRLAEEIEALSERLESELEELSDRLEERLDEVKERIEERI 69 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCSCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhHH-HHHHhhhhHHHHHHHHHhhHH-HHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHH
Q psy5601 167 VELRKELTSVRSKNET-LDSELKCRDEEVKKLTNAKHA-VEDKCKLLSQENAE--------LQAAISLVQAQLDTLLASQ 236 (270)
Q Consensus 167 pel~~e~~~L~~~l~~-lE~~l~~~d~el~~L~~e~e~-l~~~~e~~~~r~~~--------lE~~i~~LE~~Lee~~~~~ 236 (270)
..+...++..-..+.. +..........+......+.. +...+..+...... +...+..+...+...-...
T Consensus 70 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~~~ 149 (202)
T PF01442_consen 70 EELKNSLDSSTSELDESLSERAEELKERLEARAEELESRLEEEVDELEESLESRSEELKEKIEERLEELSEELTERAEEL 149 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHhhhHHHH
Q ss_pred HH-HHHHHHHHHHHHhHHHHHHHH
Q psy5601 237 DA-QRRIIDTLNHQLAGRVAELAT 259 (270)
Q Consensus 237 ~~-~~~El~~l~e~ld~ki~eL~e 259 (270)
.. +...+..+...++.....|..
T Consensus 150 ~~~i~~~~~~l~~~l~~~~~~l~~ 173 (202)
T PF01442_consen 150 EAKISERLEELRESLEEKAEELKE 173 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 475
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=37.55 E-value=2.3e+02 Score=23.28 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 165 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIID 244 (270)
Q Consensus 165 eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~ 244 (270)
+...|..+...-...+......+..+...+..|..-.-.+..++..+..+...+-.++=.+=..++-++..=-.+..+=.
T Consensus 31 GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe 110 (141)
T PF13874_consen 31 GFEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEE 110 (141)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q ss_pred HHHHHHhHHHHHHHH
Q psy5601 245 TLNHQLAGRVAELAT 259 (270)
Q Consensus 245 ~l~e~ld~ki~eL~e 259 (270)
.|...++....+|..
T Consensus 111 ~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 111 ELRKRLEALEAQLNA 125 (141)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHcC
No 476
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=37.50 E-value=2.4e+02 Score=23.46 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 173 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLAS 235 (270)
Q Consensus 173 ~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~ 235 (270)
++.+-.....+|..+...-.-|..|+.++.......+.....+..++..++.+..++.+....
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 477
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=37.50 E-value=4.5e+02 Score=26.59 Aligned_cols=151 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred hhhhhhc-ccccccccchhHHHHhhhhhcchhhhhhhHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q psy5601 45 LNHQLAG-RVADSANAKKWEIELANLKSNNLRLTSALQESTAN-VEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAV 122 (270)
Q Consensus 45 en~~l~~-~~~ss~n~~~~E~el~~Lk~~n~rl~~al~Es~a~-v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ 122 (270)
+++.+.. +..+.+|.-++=.-+.-|+..++--+.-|.-.+.. ++.|..=+..|+..|--|-..-+-+.
T Consensus 50 ~~~~~~~~l~~~~i~Y~~c~~i~~iL~~te~~skn~fG~yss~rmk~W~~Iv~~yeK~n~~L~E~a~~L~---------- 119 (507)
T PF05600_consen 50 EHDEIVQLLSGSYINYFHCKRIVEILKQTEADSKNIFGRYSSQRMKDWQEIVKLYEKDNLYLAEAAQILV---------- 119 (507)
T ss_pred chHHHHHhcccCCCCHHHHHHHHHHHhCCCccccceeccccchhHHHHHHHHHHHHhccchHHHHHHHHH----------
Q ss_pred HHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhh
Q psy5601 123 ELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK 201 (270)
Q Consensus 123 ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~ 201 (270)
.-++=+|-.++.++..++..+..+.++..++-.. ..-.......+..+--.-..+..+|..+-.+|+.+-.++
T Consensus 120 ------r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl~l~~~LP~~~~~i 193 (507)
T PF05600_consen 120 ------RNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELLELVKELPSLFDEI 193 (507)
T ss_pred ------HHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHH
Q psy5601 202 HAVEDKCKLL 211 (270)
Q Consensus 202 e~l~~~~e~~ 211 (270)
...-..+..+
T Consensus 194 ~~~i~~l~~a 203 (507)
T PF05600_consen 194 VEAISDLQEA 203 (507)
T ss_pred HHHHHHHHHH
No 478
>PRK15396 murein lipoprotein; Provisional
Probab=37.45 E-value=1.8e+02 Score=21.98 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5601 207 KCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELA 258 (270)
Q Consensus 207 ~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~ 258 (270)
+++.+.+..+.+..++..+......++........|-.+..+.+|....-++
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy~ 77 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKYR 77 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 479
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=37.44 E-value=2.5e+02 Score=23.65 Aligned_cols=98 Identities=24% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHh-------------------
Q psy5601 127 ELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSEL------------------- 187 (270)
Q Consensus 127 e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l------------------- 187 (270)
+..++.+.+..+..++..++.++..|+.-+ .++......|+.+...=
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~--------------~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv 72 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAI--------------SELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKV 72 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEe
Q ss_pred -----------------hhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 188 -----------------KCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDA 238 (270)
Q Consensus 188 -----------------~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~ 238 (270)
.+.+.-|..|+.+++.+..-++.+.+.++.+..++..+...+.........
T Consensus 73 ~~~~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 73 KDMDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred ccCceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>KOG4326|consensus
Probab=37.31 E-value=31 Score=25.85 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=0.0
Q ss_pred ccccchhhhhHHHHHH--HHHhh------------------HHHhhHH
Q psy5601 9 KFGQWSDIRANTVSLV--QAQLD------------------TLLASQD 36 (270)
Q Consensus 9 ~~gqwad~~an~~~~~--~~~l~------------------~~~~~~~ 36 (270)
|||.|+----.-+||. -.+|. |++|.+|
T Consensus 13 kfGRysaL~lGvaYGa~r~~~l~~~~e~~Rei~a~eKav~da~~a~ek 60 (81)
T KOG4326|consen 13 KFGRYSALSLGVAYGAFRLRQLREYHEDIREIDAHEKAVADAEEAAEK 60 (81)
T ss_pred HhhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHH
No 481
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=37.21 E-value=90 Score=27.05 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHH
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSE 186 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~ 186 (270)
.+.-.+--.+..++..+..+..||...+.+|.-||- .-||.+.+.+..+...|++.|.+
T Consensus 127 ~~~l~~~i~lA~~e~~~~~L~~ei~kT~RRVNALE~--vlIP~l~~tik~I~~~LeE~ERE 185 (196)
T PF01813_consen 127 EELLELLIELAELETALRRLAEEIRKTQRRVNALEK--VLIPRLEETIKYIRSELEERERE 185 (196)
T ss_dssp HHHHHHHHCHHHHHHHHHHHCHHHHHHCHHHHHHHH--CHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHHH
No 482
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=36.75 E-value=1.3e+02 Score=26.48 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHH
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSE 186 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~ 186 (270)
.+.-.+--++.+++..+..+..||...+.+|.-||- .-||.+.+-+-.++..|++.|.+
T Consensus 126 ~~ll~~~i~lAe~E~~l~~L~~ei~kT~rRVNalE~--v~IP~~~~~ik~I~~~LeE~ERe 184 (201)
T PRK02195 126 KELVQLKIEAEVLQERLLLLEEELRKTTQRVNLFEK--VLIPETKANIKKIKIFLGDQETA 184 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccHHHHHHHHHHHHhHHhHH
No 483
>PRK11020 hypothetical protein; Provisional
Probab=36.61 E-value=1.5e+02 Score=24.14 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhh--hhhhHHHHHHHHHHHHhhHHH
Q psy5601 138 LDSELKCRDEEVKKLTNAKHAVEDK--CKAAVELRKELTSVRSKNETL 183 (270)
Q Consensus 138 le~eL~~~e~Eie~L~~qi~~LE~~--~~eipel~~e~~~L~~~l~~l 183 (270)
++.+|+.+..-++.++.+......+ ..-|.+++.+++.|..+|.++
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~l 50 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARL 50 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
No 484
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=36.48 E-value=2.7e+02 Score=23.77 Aligned_cols=132 Identities=13% Similarity=0.170 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Q psy5601 119 EAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLT 198 (270)
Q Consensus 119 ~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~ 198 (270)
+.+..|+..+.++-.=.+.-..+...+..|+..++.++ ..+=.+++.|+...+..-..|.+.-
T Consensus 6 ~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v-----------------~~~I~evD~Le~~er~aR~rL~eVS 68 (159)
T PF05384_consen 6 KTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEV-----------------SEVIEEVDKLEKRERQARQRLAEVS 68 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 199 NAKHA-VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 199 ~e~e~-l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
..... ....+..+-..-.++..++..+..+-..++.+++.++..|..+.+.++.--.-+.-+.=-|..|
T Consensus 69 ~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL 138 (159)
T PF05384_consen 69 RNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYL 138 (159)
T ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=36.31 E-value=2.9e+02 Score=24.02 Aligned_cols=103 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH-HHH
Q psy5601 142 LKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE-LQA 220 (270)
Q Consensus 142 L~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~-lE~ 220 (270)
|...-.++..+-+.+..|-. +.+..-....-.-.....+++.++..++.++..|..++.++..+++.+..+..+ ...
T Consensus 86 L~rvrde~~~~l~~y~~l~~--s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~ 163 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYE--SSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQE 163 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 221 AISLVQAQLDTLLASQDAQRRIIDTL 246 (270)
Q Consensus 221 ~i~~LE~~Lee~~~~~~~~~~El~~l 246 (270)
..+....++.-++..-..++..|+.+
T Consensus 164 ~~k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 164 EEKKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
No 486
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=36.08 E-value=4e+02 Score=25.60 Aligned_cols=180 Identities=14% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHhhhhhchHHHHHHHHHHHHH---------
Q psy5601 81 QESTANVEEWKKQLQAYKEENQKLKTKYIELEATKG---VSEAAVELRKELTSVRSKNETLDSELKCRDEE--------- 148 (270)
Q Consensus 81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~---~~~~~~ele~e~~~l~~~~eele~eL~~~e~E--------- 148 (270)
..+.....=+..++..++.+......++..-....+ ......-......++...+....+++......
T Consensus 167 ~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 246 (444)
T TIGR03017 167 EPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDA 246 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc
Q ss_pred ---------HHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh-hHHHHHHHHHHhHHHHHH
Q psy5601 149 ---------VKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA-KHAVEDKCKLLSQENAEL 218 (270)
Q Consensus 149 ---------ie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e-~e~l~~~~e~~~~r~~~l 218 (270)
+..|+.++..++. +..++......-.-.+..+..++.+....|...... ...+......+..+.+++
T Consensus 247 ~~~~~~~~~i~~l~~~l~~le~---~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l 323 (444)
T TIGR03017 247 LPEVIANPIIQNLKTDIARAES---KLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAEL 323 (444)
T ss_pred chhhhcChHHHHHHHHHHHHHH---HHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 219 QAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 219 E~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
...+..++.++..+-.... ++..|.-.++-...-|..+..-+..+
T Consensus 324 ~~~l~~~~~~~~~l~~~~~----~~~~L~r~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 324 REALENQKAKVLELNRQRD----EMSVLQRDVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=36.01 E-value=89 Score=22.36 Aligned_cols=30 Identities=7% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLN 247 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~ 247 (270)
+|.|+..||.+|...+++....+.++..++
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 488
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=35.81 E-value=62 Score=23.21 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHhhhhHH
Q psy5601 166 AVELRKELTSVRSKNETLDSELKCRDE 192 (270)
Q Consensus 166 ipel~~e~~~L~~~l~~lE~~l~~~d~ 192 (270)
+.+|.+.|..|+.+|.+++..+..+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>KOG2391|consensus
Probab=35.73 E-value=4.2e+02 Score=25.69 Aligned_cols=139 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHH
Q psy5601 95 QAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELT 174 (270)
Q Consensus 95 ~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~ 174 (270)
.+.+++.+++...+..+.. +.++|......|....+.||.++..++.-|+-|...+
T Consensus 221 ~r~eeeme~~~aeq~slkR------t~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~------------------ 276 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKR------TEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV------------------ 276 (365)
T ss_pred HHHHHHHHHHHHHHHHHHh------hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------------------
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5601 175 SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRV 254 (270)
Q Consensus 175 ~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki 254 (270)
++.+..++. +.+.+ +-+--....-+..++-.+-..-...|..|-.|..-++.-.-..+..-.-++-|--+---..
T Consensus 277 --~eal~~~~n-~~~~~--~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR~lsReQF~~r 351 (365)
T KOG2391|consen 277 --REALEKAEN-LEALD--IDEAIECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVRLLSREQFILR 351 (365)
T ss_pred --HHHHhhhcc-CcCCC--chhhhhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q psy5601 255 AELATIHR 262 (270)
Q Consensus 255 ~eL~el~~ 262 (270)
+...-.|+
T Consensus 352 at~qk~r~ 359 (365)
T KOG2391|consen 352 ATMQKCRQ 359 (365)
T ss_pred HHHHHHHH
No 490
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.60 E-value=1.6e+02 Score=20.71 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 88 EEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 88 ~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
+.++.+.-..+...+.-..+.-... .+..|+.....|......|..++..+..++..|..++
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~-------~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQ-------YIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 491
>PRK10869 recombination and repair protein; Provisional
Probab=35.46 E-value=4.9e+02 Score=26.44 Aligned_cols=143 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhh
Q psy5601 101 NQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKN 180 (270)
Q Consensus 101 n~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l 180 (270)
...|...+..+. .+..+......+...++..-..|.+...++...-..+ +--|+--+++..--..|
T Consensus 243 ~~~l~~~~~~l~-------~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~-------~~dp~~l~~ie~Rl~~l 308 (553)
T PRK10869 243 LSQLYSAKQLLS-------ELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRL-------DLDPNRLAELEQRLSKQ 308 (553)
T ss_pred HHHHHHHHHHHH-------HHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHH
Q psy5601 181 ETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRI-IDTLNHQLAGRVAEL 257 (270)
Q Consensus 181 ~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~E-l~~l~e~ld~ki~eL 257 (270)
..|..++..--.+|-....++..--+.++..+..+..++.++..+...+..+-..+...+.. ...|...+...+.+|
T Consensus 309 ~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L 386 (553)
T PRK10869 309 ISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHEL 386 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 492
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=35.35 E-value=12 Score=37.54 Aligned_cols=128 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 82 ESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 82 Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
+....+++++.+|..|++...-...++.|-|+ ++. ..=+++.+-|..|+..++.=..++..+-.
T Consensus 366 ~~~~~~e~YEqEI~~LkErL~~S~rkLeEyEr------rLl----------~QEqqt~Kll~qyq~RLedSE~RLr~QQ~ 429 (495)
T PF12004_consen 366 ESMKEVEKYEQEIQSLKERLRMSHRKLEEYER------RLL----------SQEQQTQKLLLQYQARLEDSEERLRRQQE 429 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHH----------HhHHHHHHHHHHHHHhhhhhHHHHHHHhh
Q ss_pred h-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 162 K-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLAS 235 (270)
Q Consensus 162 ~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~ 235 (270)
+ ++.+-.+-.++-.++++|. .+-.++..-++.-..=|+.=+.+++.|...+..|=..|..++++
T Consensus 430 eKd~qmksII~RL~~vEeELr----------re~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~r 494 (495)
T PF12004_consen 430 EKDSQMKSIISRLMAVEEELR----------REHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKER 494 (495)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred hhHHHHHHHHhhhhhhhhhhh----------hhHHHHhcccccchHHHHHhhhhccccccccccccccccccccC
No 493
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=35.25 E-value=2.9e+02 Score=23.68 Aligned_cols=93 Identities=11% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHh-h
Q psy5601 106 TKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSK-N 180 (270)
Q Consensus 106 ~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~-l 180 (270)
..|....+ +...++...-.++..+.-.+..+.....++++|...|..|..- .+.++-++++.....+- +
T Consensus 44 e~id~ime------r~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~v 117 (157)
T COG3352 44 EVIDAIME------RMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIV 117 (157)
T ss_pred HHHHHHHH------HHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHH
Q ss_pred HHHHHHhhhhHHHHHHHHHhhHHH
Q psy5601 181 ETLDSELKCRDEEVKKLTNAKHAV 204 (270)
Q Consensus 181 ~~lE~~l~~~d~el~~L~~e~e~l 204 (270)
++++..+.+....+......+..+
T Consensus 118 eel~eqV~el~~i~emv~~d~~~l 141 (157)
T COG3352 118 EELEEQVNELKMIVEMVIKDLREL 141 (157)
T ss_pred HHHHHHHHHHHHHHHHHhccchhh
No 494
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=35.06 E-value=5.2e+02 Score=26.59 Aligned_cols=191 Identities=13% Similarity=0.170 Sum_probs=0.0
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh------------HHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy5601 80 LQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSE------------AAVELRKELTSVRSKNETLDSELKCRDE 147 (270)
Q Consensus 80 l~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~------------~~~ele~e~~~l~~~~eele~eL~~~e~ 147 (270)
+.-+.+.+...+.+|..+.+..+.+...|.++-.+-..-+ -..++-.-..+++..+..++++|...+.
T Consensus 99 F~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~ 178 (570)
T COG4477 99 FNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEE 178 (570)
T ss_pred hHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q ss_pred HHHH-------------------HHHhhHHhhhhhhhhHHHHHHH-HHHHHhhHHHHHHhh------------hhHHHHH
Q psy5601 148 EVKK-------------------LTNAKHAVEDKCKAAVELRKEL-TSVRSKNETLDSELK------------CRDEEVK 195 (270)
Q Consensus 148 Eie~-------------------L~~qi~~LE~~~~eipel~~e~-~~L~~~l~~lE~~l~------------~~d~el~ 195 (270)
+++. ....+..|.+-...||.|-..+ +.+=..|..|..-++ ++|.++.
T Consensus 179 ~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~ 258 (570)
T COG4477 179 ELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLE 258 (570)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHH
Q ss_pred HHHHhhHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Q psy5601 196 KLTNAKHAVED-----KCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT 270 (270)
Q Consensus 196 ~L~~e~e~l~~-----~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~~~~ 270 (270)
.|..++...+. +|+.++..+.-...+|..+=.-++.==.+......-+..|.+-+....+....+..++..+=++
T Consensus 259 ~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~s 338 (570)
T COG4477 259 RLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKES 338 (570)
T ss_pred HHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=34.68 E-value=61 Score=23.46 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi 156 (270)
.|.+|+..|..++.||++|+.+.
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
No 496
>KOG4438|consensus
Probab=34.62 E-value=4.8e+02 Score=26.03 Aligned_cols=153 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHH
Q psy5601 93 QLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKE 172 (270)
Q Consensus 93 qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e 172 (270)
++..+-+--.++-+++.++.. .++.+...-..=+.++..|..++.+|.. .+.++..+
T Consensus 139 q~eslle~~~q~da~~qq~~~--------------------ele~~d~~~~~d~ee~kqlEe~ieeL~q---sl~kd~~~ 195 (446)
T KOG4438|consen 139 QLESLLELRKQLDAKYQQALK--------------------ELERFDEDVEEDEEEVKQLEENIEELNQ---SLLKDFNQ 195 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------------HHHhhcccccccHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_pred HHHHHHhhHHHHHHhhh-hHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 173 LTSVRSKNETLDSELKC-RDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA 251 (270)
Q Consensus 173 ~~~L~~~l~~lE~~l~~-~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld 251 (270)
...+...-.+.-..-.+ +...++.+..-+..|.+-...+...+..-=.++...-.++...-........++.....-+.
T Consensus 196 ~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ 275 (446)
T KOG4438|consen 196 QMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILE 275 (446)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy5601 252 GRVAELATIHREINTAL 268 (270)
Q Consensus 252 ~ki~eL~el~~~l~~~~ 268 (270)
.+++-+..+..++-.++
T Consensus 276 ekv~~~qti~~e~~~~l 292 (446)
T KOG4438|consen 276 EKVTNLQTIEKELKALL 292 (446)
T ss_pred hHhHHHHHHHHHHHHHH
No 497
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.52 E-value=4.2e+02 Score=25.40 Aligned_cols=92 Identities=12% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHH
Q psy5601 175 SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLA-SQDAQRRIIDTLNHQLAGR 253 (270)
Q Consensus 175 ~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~-~~~~~~~El~~l~e~ld~k 253 (270)
++.++.++++.+..+++.........++++..--..+...+..-..+++++...|...+. .-.+-...+..+.+.+...
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q psy5601 254 VAELATIHREINT 266 (270)
Q Consensus 254 i~eL~el~~~l~~ 266 (270)
..-+.+...-|++
T Consensus 81 ~~~l~DmEa~LPk 93 (330)
T PF07851_consen 81 RCQLFDMEAFLPK 93 (330)
T ss_pred HhhHHHHHhhCCC
No 498
>PRK15396 murein lipoprotein; Provisional
Probab=34.50 E-value=2e+02 Score=21.70 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy5601 172 ELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE 217 (270)
Q Consensus 172 e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~ 217 (270)
+++.|...+..|...+..+..+++.++..+....++...+..|+..
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=34.44 E-value=3.1e+02 Score=23.87 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHh-hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5601 176 VRSKNETLDSELKCRDEEVKKLTNA-KHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRV 254 (270)
Q Consensus 176 L~~~l~~lE~~l~~~d~el~~L~~e-~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki 254 (270)
+..--..++........+..+...+ ...+..++..-...+...+.++..-+..|+.....+......|......++...
T Consensus 40 ~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~ 119 (201)
T PF12072_consen 40 LEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRK 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhc
Q psy5601 255 AELATIHREINTALQ 269 (270)
Q Consensus 255 ~eL~el~~~l~~~~~ 269 (270)
..|...+..+..+++
T Consensus 120 ~~l~~~~~e~~~~~~ 134 (201)
T PF12072_consen 120 EELEEREEELEELIE 134 (201)
T ss_pred HHHHHHHHHHHHHHH
No 500
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=34.29 E-value=4.7e+02 Score=25.82 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHH
Q psy5601 136 ETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQEN 215 (270)
Q Consensus 136 eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~ 215 (270)
..|...|...-.|..+|+.+..++|. .|+...+.-|+.-.........|+.++ ....+-+-.++
T Consensus 288 r~Lr~~I~~VarENs~LqrQKle~e~-------------~l~a~qeakek~~KEAqareaklqaec---~rQ~qlaLEEK 351 (442)
T PF06637_consen 288 RSLRAGIERVARENSDLQRQKLEAEQ-------------GLQASQEAKEKAGKEAQAREAKLQAEC---ARQTQLALEEK 351 (442)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 216 AELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA 251 (270)
Q Consensus 216 ~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld 251 (270)
+.+...-..|..+|++.+...+.+...+.--...||
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Done!