Query psy5601
Match_columns 270
No_of_seqs 165 out of 226
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 21:43:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cvf_A Homer-3, homer protein 99.4 3.7E-12 1.3E-16 95.1 9.4 74 196-269 3-76 (79)
2 3cve_A Homer protein homolog 1 99.3 4E-11 1.4E-15 88.0 10.5 68 202-269 3-70 (72)
3 1c1g_A Tropomyosin; contractIl 98.9 6E-06 2E-10 70.8 28.3 21 240-260 236-256 (284)
4 1i2h_A PSD-ZIP45(homer-1C/VESL 98.6 2.4E-09 8.2E-14 90.7 -2.7 64 1-64 70-157 (168)
5 1ddw_A GLGF-domain protein hom 98.4 1E-08 3.6E-13 82.4 -2.7 39 1-39 65-119 (120)
6 2v71_A Nuclear distribution pr 98.3 0.00024 8.1E-09 61.1 22.6 31 83-113 8-38 (189)
7 3na7_A HP0958; flagellar bioge 98.3 0.00015 5.2E-09 64.7 21.5 124 80-217 13-136 (256)
8 3na7_A HP0958; flagellar bioge 98.3 0.0003 1E-08 62.7 22.3 64 192-255 90-153 (256)
9 2v71_A Nuclear distribution pr 97.9 0.0032 1.1E-07 54.0 19.9 24 207-230 131-154 (189)
10 2dfs_A Myosin-5A; myosin-V, in 97.6 0.0025 8.5E-08 67.5 18.6 93 96-197 918-1010(1080)
11 3vkg_A Dynein heavy chain, cyt 97.2 0.062 2.1E-06 62.5 25.1 155 80-243 1929-2086(3245)
12 3o0z_A RHO-associated protein 97.1 0.1 3.6E-06 43.7 19.9 84 176-259 53-136 (168)
13 2dfs_A Myosin-5A; myosin-V, in 97.0 0.018 6.3E-07 60.9 17.5 32 129-160 924-955 (1080)
14 2fxo_A Myosin heavy chain, car 96.9 0.083 2.9E-06 42.2 16.8 59 201-259 64-122 (129)
15 2fxo_A Myosin heavy chain, car 96.9 0.12 4.2E-06 41.3 18.4 49 88-142 9-57 (129)
16 3syx_A Sprouty-related, EVH1 d 96.9 5.6E-05 1.9E-09 61.3 -2.7 28 1-30 79-110 (130)
17 3oja_B Anopheles plasmodium-re 96.8 0.011 3.7E-07 57.6 12.7 81 174-254 505-585 (597)
18 2efr_A General control protein 96.8 0.16 5.6E-06 42.1 22.7 28 134-161 36-63 (155)
19 2ocy_A RAB guanine nucleotide 96.8 0.17 5.8E-06 41.9 18.8 137 79-249 7-144 (154)
20 2efr_A General control protein 96.7 0.2 6.9E-06 41.5 22.4 112 138-259 26-137 (155)
21 3o0z_A RHO-associated protein 96.7 0.22 7.5E-06 41.8 20.9 24 133-156 55-78 (168)
22 3u1c_A Tropomyosin alpha-1 cha 96.7 0.07 2.4E-06 41.1 13.9 22 135-156 4-25 (101)
23 3u59_A Tropomyosin beta chain; 96.6 0.064 2.2E-06 41.1 13.4 27 134-160 3-29 (101)
24 3oja_B Anopheles plasmodium-re 96.2 0.07 2.4E-06 51.8 13.9 63 205-267 515-577 (597)
25 1evh_A WH1 domain, protein (ME 96.2 0.00044 1.5E-08 54.6 -1.7 28 1-30 68-99 (112)
26 3bas_A Myosin heavy chain, str 95.9 0.083 2.8E-06 39.7 10.2 52 179-230 36-87 (89)
27 1egx_A VAsp, vasodilator-stimu 95.8 0.00088 3E-08 53.1 -1.6 28 1-30 70-101 (115)
28 3tnu_B Keratin, type II cytosk 95.6 0.17 5.9E-06 40.3 11.5 30 218-247 80-109 (129)
29 3vkg_A Dynein heavy chain, cyt 95.5 3.6 0.00012 48.3 25.7 91 177-267 2013-2103(3245)
30 2jee_A YIIU; FTSZ, septum, coi 95.5 0.26 9E-06 36.5 11.1 71 180-250 8-78 (81)
31 1xod_A Spred1; sprouty, EVH1, 95.5 0.00089 3E-08 53.3 -2.6 29 1-31 72-104 (118)
32 3tnu_A Keratin, type I cytoske 95.3 0.14 4.8E-06 40.9 10.1 32 217-248 81-112 (131)
33 3u1c_A Tropomyosin alpha-1 cha 95.3 0.72 2.5E-05 35.3 14.5 61 134-197 10-70 (101)
34 2jp2_A Spred-2, sprouty-relate 95.0 0.0016 5.5E-08 52.4 -2.3 28 1-30 81-112 (126)
35 2eqb_B RAB guanine nucleotide 95.0 0.77 2.6E-05 35.1 12.8 57 172-228 6-62 (97)
36 3ol1_A Vimentin; structural ge 94.4 1.4 4.8E-05 34.6 15.3 25 210-234 80-104 (119)
37 3u59_A Tropomyosin beta chain; 94.4 1.2 4.2E-05 33.8 14.7 24 134-157 10-33 (101)
38 1ic2_A Tropomyosin alpha chain 94.3 0.7 2.4E-05 33.8 10.9 19 216-234 44-62 (81)
39 3hnw_A Uncharacterized protein 94.3 0.33 1.1E-05 39.3 9.8 17 210-226 114-130 (138)
40 2v66_B Nuclear distribution pr 93.9 1.8 6.1E-05 33.8 14.5 19 126-144 10-28 (111)
41 3cvf_A Homer-3, homer protein 93.8 0.44 1.5E-05 35.2 8.7 56 204-259 4-59 (79)
42 3swk_A Vimentin; cytoskeleton, 93.7 0.92 3.2E-05 33.7 10.5 52 199-250 28-79 (86)
43 2b9c_A Striated-muscle alpha t 93.6 1.6 5.4E-05 35.7 12.7 13 223-235 83-95 (147)
44 3hnw_A Uncharacterized protein 93.5 0.84 2.9E-05 36.9 10.9 60 175-234 72-131 (138)
45 2v4h_A NF-kappa-B essential mo 93.4 1 3.5E-05 35.1 10.5 47 129-175 27-73 (110)
46 2eqb_B RAB guanine nucleotide 93.4 2 7E-05 32.7 12.1 27 130-156 9-35 (97)
47 1ic2_A Tropomyosin alpha chain 93.2 1.5 5.1E-05 32.0 10.8 57 197-253 11-67 (81)
48 3ol1_A Vimentin; structural ge 92.7 2.9 9.9E-05 32.7 15.3 56 197-252 46-101 (119)
49 2v4h_A NF-kappa-B essential mo 92.2 2.8 9.5E-05 32.7 11.5 79 172-254 25-103 (110)
50 2ocy_A RAB guanine nucleotide 92.2 4.3 0.00015 33.5 20.0 44 218-261 99-142 (154)
51 2e7s_A RAB guanine nucleotide 92.0 0.8 2.7E-05 37.0 8.6 34 216-249 99-132 (135)
52 1l8d_A DNA double-strand break 91.4 2.1 7.3E-05 32.5 10.3 36 126-161 10-45 (112)
53 2v66_B Nuclear distribution pr 91.4 4.2 0.00014 31.7 15.1 24 198-221 48-71 (111)
54 3swk_A Vimentin; cytoskeleton, 91.3 3.2 0.00011 30.7 10.8 38 188-232 45-82 (86)
55 3bas_A Myosin heavy chain, str 91.1 3.6 0.00012 30.5 10.9 11 181-191 31-41 (89)
56 3cve_A Homer protein homolog 1 90.8 2.8 9.7E-05 30.2 9.6 55 210-264 4-58 (72)
57 1qc6_A EVH1 domain from ENA/VA 90.5 0.026 8.7E-07 45.4 -1.7 39 1-43 69-111 (130)
58 3i00_A HIP-I, huntingtin-inter 90.1 3.3 0.00011 32.7 10.3 60 192-251 15-78 (120)
59 2oto_A M protein; helical coil 89.1 7.9 0.00027 31.4 15.0 13 147-159 29-41 (155)
60 3i00_A HIP-I, huntingtin-inter 88.2 4.4 0.00015 32.0 9.8 61 85-161 15-82 (120)
61 3mq9_A Bone marrow stromal ant 88.1 15 0.00053 34.2 15.5 67 168-237 401-467 (471)
62 3q8t_A Beclin-1; autophagy, AT 88.1 7 0.00024 29.5 13.4 27 134-160 5-31 (96)
63 3qh9_A Liprin-beta-2; coiled-c 88.1 4.4 0.00015 29.8 8.9 55 96-156 23-77 (81)
64 2xnx_M M protein, M1-BC1; cell 88.1 1.5 5.2E-05 35.8 7.1 81 164-244 59-139 (146)
65 2jee_A YIIU; FTSZ, septum, coi 88.0 6.5 0.00022 29.0 11.4 48 204-251 18-65 (81)
66 1x79_B RAB GTPase binding effe 87.8 8.3 0.00028 30.1 11.0 64 134-197 7-71 (112)
67 3qh9_A Liprin-beta-2; coiled-c 87.5 6.9 0.00024 28.8 10.5 56 210-265 23-78 (81)
68 1go4_E MAD1 (mitotic arrest de 86.8 4.3 0.00015 31.1 8.6 73 83-161 10-96 (100)
69 3a7p_A Autophagy protein 16; c 86.3 7.4 0.00025 31.9 10.3 20 179-198 69-88 (152)
70 3jsv_C NF-kappa-B essential mo 86.2 6.1 0.00021 29.9 9.1 81 172-256 3-83 (94)
71 3q8t_A Beclin-1; autophagy, AT 86.2 9.1 0.00031 28.8 14.2 30 237-266 63-92 (96)
72 3mq7_A Bone marrow stromal ant 85.6 11 0.00039 29.5 11.2 25 134-158 40-64 (121)
73 2zqm_A Prefoldin beta subunit 85.6 9.9 0.00034 28.7 11.0 17 136-152 23-39 (117)
74 1wt6_A Myotonin-protein kinase 85.1 5.6 0.00019 29.3 8.2 33 205-237 37-69 (81)
75 3jsv_C NF-kappa-B essential mo 84.8 5.5 0.00019 30.1 8.2 47 130-176 6-52 (94)
76 3mq9_A Bone marrow stromal ant 84.0 7.3 0.00025 36.5 10.8 20 131-150 409-428 (471)
77 1fxk_A Prefoldin; archaeal pro 83.6 12 0.0004 27.9 10.0 23 169-191 70-92 (107)
78 1l8d_A DNA double-strand break 83.5 12 0.00042 28.1 11.3 31 219-249 70-100 (112)
79 3nmd_A CGMP dependent protein 83.2 3.6 0.00012 29.7 6.4 27 133-159 40-66 (72)
80 2oto_A M protein; helical coil 83.1 17 0.00057 29.3 18.1 14 218-231 126-139 (155)
81 1m1j_B Fibrinogen beta chain; 82.9 27 0.00094 33.5 14.3 54 134-187 136-191 (464)
82 3ghg_A Fibrinogen alpha chain; 82.0 19 0.00064 35.2 12.6 12 148-159 65-76 (562)
83 3iox_A AGI/II, PA; alpha helix 81.3 14 0.00046 35.8 11.4 66 88-162 44-109 (497)
84 2b9c_A Striated-muscle alpha t 81.0 21 0.0007 29.0 15.0 11 218-228 99-109 (147)
85 2lw1_A ABC transporter ATP-bin 80.9 5.5 0.00019 29.4 6.9 25 134-158 23-47 (89)
86 2pms_C Pneumococcal surface pr 80.3 7.6 0.00026 30.9 7.8 40 183-226 49-88 (125)
87 3vmx_A Voltage-gated hydrogen 80.2 3.8 0.00013 27.2 5.1 24 92-115 4-27 (48)
88 3mq7_A Bone marrow stromal ant 79.7 20 0.00069 28.1 11.1 77 76-161 30-106 (121)
89 3nmd_A CGMP dependent protein 79.1 5 0.00017 28.9 5.9 28 219-246 39-66 (72)
90 2zqm_A Prefoldin beta subunit 78.2 19 0.00066 27.0 11.1 36 209-244 73-108 (117)
91 3a7o_A Autophagy protein 16; c 77.9 14 0.00046 26.6 7.7 60 174-233 14-73 (75)
92 2wt7_B Transcription factor MA 77.4 20 0.00069 26.8 9.9 70 83-159 19-88 (90)
93 4emc_A Monopolin complex subun 76.0 9.2 0.00032 32.4 7.6 49 183-231 11-59 (190)
94 3m9b_A Proteasome-associated A 75.9 4.6 0.00016 35.8 5.9 71 92-162 24-97 (251)
95 1fxk_A Prefoldin; archaeal pro 75.8 22 0.00074 26.3 11.0 18 218-235 77-94 (107)
96 2oqq_A Transcription factor HY 75.8 8.4 0.00029 24.8 5.5 29 203-231 7-35 (42)
97 2pms_C Pneumococcal surface pr 74.7 28 0.00097 27.5 9.7 22 245-266 100-121 (125)
98 2i1j_A Moesin; FERM, coiled-co 74.6 3.9 0.00013 40.2 5.8 85 168-252 367-451 (575)
99 2dq0_A Seryl-tRNA synthetase; 74.4 9.7 0.00033 36.3 8.3 73 121-200 33-105 (455)
100 3qne_A Seryl-tRNA synthetase, 74.2 11 0.00037 36.5 8.6 72 122-200 36-107 (485)
101 3m91_A Proteasome-associated A 74.1 3.5 0.00012 27.8 3.6 33 65-97 17-49 (51)
102 1wle_A Seryl-tRNA synthetase; 73.7 31 0.0011 33.3 11.8 81 120-200 71-152 (501)
103 2xdj_A Uncharacterized protein 73.2 25 0.00085 25.8 9.9 42 203-244 24-65 (83)
104 3s4r_A Vimentin; alpha-helix, 72.5 27 0.00093 26.0 11.3 19 214-232 71-89 (93)
105 3htk_A Structural maintenance 71.6 20 0.00068 24.0 7.7 39 227-265 12-50 (60)
106 2i1j_A Moesin; FERM, coiled-co 68.9 5.2 0.00018 39.4 5.1 35 126-160 335-369 (575)
107 4h22_A Leucine-rich repeat fli 68.6 37 0.0013 26.0 9.4 14 201-214 32-45 (103)
108 1ci6_A Transcription factor AT 68.3 15 0.00051 25.4 6.1 34 201-234 25-58 (63)
109 1t3j_A Mitofusin 1; coiled coi 67.6 25 0.00086 26.6 7.6 40 144-183 51-90 (96)
110 3efg_A Protein SLYX homolog; x 67.4 18 0.00061 26.2 6.5 46 204-249 12-57 (78)
111 3efg_A Protein SLYX homolog; x 67.3 21 0.00072 25.8 6.9 18 173-190 16-33 (78)
112 1x8y_A Lamin A/C; structural p 67.2 34 0.0012 25.0 10.2 15 223-237 38-52 (86)
113 1x79_B RAB GTPase binding effe 65.9 45 0.0015 25.9 12.3 29 128-156 40-68 (112)
114 2lw1_A ABC transporter ATP-bin 65.7 36 0.0012 24.8 8.6 22 92-113 22-43 (89)
115 1x8y_A Lamin A/C; structural p 65.4 37 0.0013 24.8 9.8 22 166-187 5-26 (86)
116 3mov_A Lamin-B1; LMNB1, B-type 63.7 34 0.0011 25.6 7.7 20 93-112 13-32 (95)
117 3iv1_A Tumor susceptibility ge 63.5 40 0.0014 24.5 8.7 35 126-160 39-73 (78)
118 2dq3_A Seryl-tRNA synthetase; 63.4 11 0.00036 35.7 5.9 56 145-200 49-104 (425)
119 1gk4_A Vimentin; intermediate 62.8 41 0.0014 24.4 11.9 31 218-248 31-61 (84)
120 3qne_A Seryl-tRNA synthetase, 62.6 51 0.0017 31.8 10.6 72 76-150 31-102 (485)
121 2oqq_A Transcription factor HY 60.4 22 0.00075 22.9 5.1 33 124-156 8-40 (42)
122 2dq0_A Seryl-tRNA synthetase; 60.2 52 0.0018 31.2 10.2 75 77-154 30-104 (455)
123 2q6q_A Spindle POLE BODY compo 60.1 43 0.0015 23.8 7.3 27 136-162 6-32 (74)
124 3mov_A Lamin-B1; LMNB1, B-type 59.9 52 0.0018 24.6 9.2 31 218-248 42-72 (95)
125 3oja_A Leucine-rich immune mol 59.2 1.1E+02 0.0039 28.3 16.5 37 200-236 443-479 (487)
126 1ses_A Seryl-tRNA synthetase; 58.1 28 0.00097 32.7 7.8 37 164-200 64-100 (421)
127 1go4_E MAD1 (mitotic arrest de 57.6 24 0.00081 26.9 5.9 27 135-161 14-40 (100)
128 1t2k_D Cyclic-AMP-dependent tr 57.4 36 0.0012 23.0 6.3 31 202-232 25-55 (61)
129 2yy0_A C-MYC-binding protein; 57.2 23 0.00079 23.7 5.1 28 85-112 19-46 (53)
130 3s9g_A Protein hexim1; cyclin 57.1 22 0.00074 27.1 5.5 45 63-107 43-87 (104)
131 1fxk_C Protein (prefoldin); ar 55.0 70 0.0024 24.6 13.1 26 135-160 3-28 (133)
132 3a2a_A Voltage-gated hydrogen 53.5 21 0.00071 24.3 4.3 27 130-156 22-48 (58)
133 1wle_A Seryl-tRNA synthetase; 52.6 99 0.0034 29.8 10.8 37 77-113 69-105 (501)
134 3c9i_A Tail needle protein GP2 52.2 1.1E+02 0.0039 26.2 13.0 24 211-234 117-140 (242)
135 4gkw_A Spindle assembly abnorm 52.1 90 0.0031 25.0 18.4 19 223-241 101-119 (167)
136 3s9g_A Protein hexim1; cyclin 52.0 69 0.0024 24.3 7.5 50 87-156 39-88 (104)
137 1ci6_A Transcription factor AT 51.9 52 0.0018 22.5 6.5 31 218-248 28-58 (63)
138 3aon_A V-type sodium ATPase su 50.9 46 0.0016 28.4 7.4 50 134-185 152-201 (217)
139 3m91_A Proteasome-associated A 50.2 54 0.0018 21.8 7.0 22 216-237 19-40 (51)
140 2akf_A Coronin-1A; coiled coil 49.4 25 0.00086 20.9 3.7 24 182-205 3-26 (32)
141 1kd8_B GABH BLL, GCN4 acid bas 49.4 37 0.0013 21.0 4.6 20 207-226 9-28 (36)
142 3he5_B Synzip2; heterodimeric 49.1 51 0.0018 21.3 6.2 12 101-112 5-16 (52)
143 3uul_A Utrophin; spectrin repe 48.2 76 0.0026 23.0 10.6 20 93-112 3-22 (118)
144 3lss_A Seryl-tRNA synthetase; 47.6 69 0.0023 30.8 8.7 80 121-200 39-140 (484)
145 1m1j_C Fibrinogen gamma chain; 47.5 1.8E+02 0.0062 27.2 12.1 25 174-198 87-111 (409)
146 1lwu_C Fibrinogen gamma chain; 47.4 43 0.0015 30.6 6.9 18 180-197 14-31 (323)
147 2pnv_A Small conductance calci 47.4 18 0.00061 23.4 3.2 21 170-190 15-35 (43)
148 1jcd_A Major outer membrane li 47.2 61 0.0021 21.7 7.7 30 222-251 20-49 (52)
149 2l5g_B Putative uncharacterize 47.0 52 0.0018 21.1 5.2 28 205-232 8-35 (42)
150 3swy_A Cyclic nucleotide-gated 46.7 58 0.002 21.2 7.0 40 218-257 3-42 (46)
151 1p9i_A Cortexillin I/GCN4 hybr 46.0 23 0.00079 20.7 3.1 25 136-160 2-26 (31)
152 2pnv_A Small conductance calci 45.4 45 0.0015 21.5 4.9 23 212-234 15-37 (43)
153 2xdj_A Uncharacterized protein 44.7 88 0.003 22.8 9.4 45 209-253 23-67 (83)
154 3lss_A Seryl-tRNA synthetase; 44.2 1.3E+02 0.0045 28.8 10.2 38 76-113 35-72 (484)
155 3a5c_G V-type ATP synthase sub 43.9 41 0.0014 28.9 6.0 53 131-185 136-188 (223)
156 1ik9_A DNA repair protein XRCC 43.8 1.5E+02 0.0052 25.2 10.9 61 204-264 137-198 (213)
157 3c3g_A Alpha/beta peptide with 43.7 42 0.0014 20.4 4.2 24 226-249 6-29 (33)
158 1deq_A Fibrinogen (alpha chain 43.1 2.1E+02 0.0072 26.7 14.2 15 146-160 66-80 (390)
159 3he5_A Synzip1; heterodimeric 42.7 64 0.0022 20.6 5.9 21 87-107 5-25 (49)
160 3c3f_A Alpha/beta peptide with 42.7 44 0.0015 20.4 4.2 25 225-249 6-30 (34)
161 1zxa_A CGMP-dependent protein 42.3 31 0.0011 24.4 4.1 29 133-161 25-53 (67)
162 3ljm_A Coil Ser L9C; de novo d 41.8 48 0.0016 19.3 4.1 20 205-224 7-26 (31)
163 1kd8_A GABH AIV, GCN4 acid bas 41.8 61 0.0021 20.1 5.0 24 206-229 8-31 (36)
164 1ses_A Seryl-tRNA synthetase; 40.5 1.2E+02 0.0039 28.4 9.0 8 193-200 43-50 (421)
165 2w83_C C-JUN-amino-terminal ki 40.5 1E+02 0.0035 22.3 9.8 34 227-260 37-70 (77)
166 1uo4_A General control protein 40.4 37 0.0013 20.8 3.6 26 225-250 6-31 (34)
167 3uux_B Mitochondrial division 40.3 1.9E+02 0.0064 25.3 10.7 17 11-29 18-34 (242)
168 3cl3_D NF-kappa-B essential mo 40.2 1.4E+02 0.0047 23.7 8.0 44 217-260 59-102 (130)
169 3m48_A General control protein 40.0 35 0.0012 20.8 3.4 25 225-249 5-29 (33)
170 1jnm_A Proto-oncogene C-JUN; B 39.9 37 0.0013 23.0 4.1 27 203-229 26-52 (62)
171 1cii_A Colicin IA; bacteriocin 39.4 2.7E+02 0.0093 26.9 16.8 30 79-108 227-256 (602)
172 1deq_A Fibrinogen (alpha chain 39.4 2.4E+02 0.0083 26.3 15.4 17 66-82 44-60 (390)
173 1kd8_A GABH AIV, GCN4 acid bas 39.3 45 0.0015 20.6 3.9 27 224-250 5-31 (36)
174 2dq3_A Seryl-tRNA synthetase; 38.7 50 0.0017 31.0 6.1 72 77-158 29-100 (425)
175 1kd8_B GABH BLL, GCN4 acid bas 38.0 71 0.0024 19.7 5.4 28 223-250 4-31 (36)
176 1vcs_A Vesicle transport throu 37.7 1.2E+02 0.0041 22.6 7.1 54 176-235 36-89 (102)
177 1zhc_A Hypothetical protein HP 37.7 1.1E+02 0.0037 21.7 7.1 52 156-208 9-60 (76)
178 1wt6_A Myotonin-protein kinase 37.3 1.2E+02 0.0041 22.1 9.4 25 207-231 46-70 (81)
179 2w6a_A ARF GTPase-activating p 37.1 1E+02 0.0035 21.3 6.1 13 77-89 19-31 (63)
180 2bni_A General control protein 37.1 47 0.0016 20.3 3.7 26 225-250 6-31 (34)
181 3ghg_C Fibrinogen gamma chain; 37.0 2.7E+02 0.0092 26.2 11.7 24 176-199 89-112 (411)
182 2qyw_A Vesicle transport throu 36.6 1.3E+02 0.0045 22.4 8.5 52 177-234 48-99 (102)
183 3a7o_A Autophagy protein 16; c 36.5 1.1E+02 0.0039 21.7 7.8 30 127-156 12-41 (75)
184 3a2a_A Voltage-gated hydrogen 36.4 49 0.0017 22.5 4.1 27 91-117 10-36 (58)
185 2q6q_A Spindle POLE BODY compo 35.6 1.2E+02 0.004 21.5 7.1 39 222-264 5-43 (74)
186 3swf_A CGMP-gated cation chann 35.2 1.2E+02 0.0042 21.7 6.8 23 221-243 8-30 (74)
187 2r2v_A GCN4 leucine zipper; co 35.1 78 0.0027 19.3 4.4 28 224-251 5-32 (34)
188 2wq1_A General control protein 34.4 63 0.0021 19.6 3.9 20 229-248 9-28 (33)
189 3uux_B Mitochondrial division 34.0 2.4E+02 0.0081 24.6 11.0 62 168-229 153-214 (242)
190 2l5g_B Putative uncharacterize 33.2 63 0.0021 20.7 4.0 29 133-161 9-37 (42)
191 2hy6_A General control protein 33.2 73 0.0025 19.5 4.1 25 225-249 6-30 (34)
192 2oxj_A Hybrid alpha/beta pepti 33.2 84 0.0029 19.2 4.4 13 235-247 16-28 (34)
193 3iox_A AGI/II, PA; alpha helix 33.2 3.4E+02 0.012 26.2 15.4 25 88-112 5-29 (497)
194 1t2k_D Cyclic-AMP-dependent tr 32.9 1.1E+02 0.0038 20.5 8.9 31 218-248 27-57 (61)
195 2xzr_A Immunoglobulin-binding 32.3 1.6E+02 0.0056 22.2 16.0 21 174-194 16-36 (114)
196 1ytz_T Troponin T; muscle, THI 32.3 1.4E+02 0.0047 22.8 6.7 42 197-238 47-88 (107)
197 1m1j_B Fibrinogen beta chain; 32.1 3.4E+02 0.012 25.9 16.3 29 175-203 125-153 (464)
198 3tul_A Cell invasion protein S 31.8 2.1E+02 0.0071 23.3 9.5 28 81-108 23-50 (158)
199 2lf0_A Uncharacterized protein 31.7 65 0.0022 25.3 4.7 46 138-183 8-55 (123)
200 3onj_A T-snare VTI1; helix, HA 31.1 1.6E+02 0.0054 21.7 10.3 25 177-201 33-57 (97)
201 1j1d_B Troponin T, TNT; THIN f 31.1 1.3E+02 0.0043 23.0 6.2 44 196-239 46-89 (106)
202 4emc_A Monopolin complex subun 30.8 2.4E+02 0.0082 23.7 9.4 24 206-229 41-64 (190)
203 2zdi_C Prefoldin subunit alpha 30.1 2E+02 0.0068 22.6 9.2 26 134-159 10-35 (151)
204 1a93_B MAX protein, coiled coi 30.1 77 0.0026 19.4 3.8 18 207-224 15-32 (34)
205 1zxa_A CGMP-dependent protein 29.9 98 0.0034 21.8 5.0 33 219-251 24-56 (67)
206 3v86_A De novo design helix; c 29.1 65 0.0022 18.2 3.1 22 131-152 5-26 (27)
207 3a5t_A Transcription factor MA 28.6 15 0.00052 28.3 0.6 66 85-157 31-96 (107)
208 3iv1_A Tumor susceptibility ge 28.5 1.7E+02 0.0057 21.2 8.9 17 144-160 22-38 (78)
209 2z5i_A TM, general control pro 28.5 1.3E+02 0.0044 19.9 5.3 14 217-230 16-29 (52)
210 1t6f_A Geminin; coiled-coil, c 28.4 85 0.0029 19.4 3.8 21 136-156 10-30 (37)
211 3u06_A Protein claret segregat 28.4 2E+02 0.007 26.7 8.5 22 212-233 16-37 (412)
212 1ik9_A DNA repair protein XRCC 28.1 2.7E+02 0.0094 23.5 10.0 8 219-226 188-195 (213)
213 1deb_A APC protein, adenomatou 27.9 1.4E+02 0.0047 19.9 6.3 26 87-112 5-30 (54)
214 2l7b_A Apolipoprotein E, APO-E 27.7 3.3E+02 0.011 24.3 11.9 33 129-161 132-165 (307)
215 2no2_A HIP-I, huntingtin-inter 27.6 2E+02 0.0068 21.7 13.7 13 144-156 26-38 (107)
216 1fmh_A General control protein 27.6 99 0.0034 18.2 4.1 27 135-161 3-29 (33)
217 4fla_A Regulation of nuclear P 27.1 2.4E+02 0.0084 22.6 15.1 17 250-266 126-142 (152)
218 4gkw_A Spindle assembly abnorm 27.0 2.4E+02 0.0083 22.5 22.0 26 133-158 46-71 (167)
219 1j1d_C Troponin I, TNI; THIN f 26.4 2.1E+02 0.007 22.7 6.9 45 196-240 62-106 (133)
220 3vmx_A Voltage-gated hydrogen 26.0 99 0.0034 20.4 4.1 29 63-91 3-31 (48)
221 1lwu_C Fibrinogen gamma chain; 25.7 1.8E+02 0.0063 26.3 7.4 19 216-234 22-40 (323)
222 2ke4_A CDC42-interacting prote 25.5 2.1E+02 0.0071 21.3 6.5 24 226-249 61-84 (98)
223 2j5u_A MREC protein; bacterial 25.2 64 0.0022 28.1 4.1 40 65-108 20-59 (255)
224 1use_A VAsp, vasodilator-stimu 24.8 1.5E+02 0.005 19.3 4.9 23 134-156 8-31 (45)
225 1dh3_A Transcription factor CR 24.3 94 0.0032 20.7 3.9 25 134-158 23-47 (55)
226 3s84_A Apolipoprotein A-IV; fo 23.7 3.7E+02 0.013 23.5 22.1 17 129-145 106-122 (273)
227 3viq_B Mating-type switching p 23.4 2.2E+02 0.0076 20.8 6.3 24 133-156 8-31 (85)
228 1uii_A Geminin; human, DNA rep 23.4 1.4E+02 0.0049 21.8 5.0 28 127-154 47-74 (83)
229 1gmj_A ATPase inhibitor; coile 22.4 2.1E+02 0.0072 20.9 5.8 25 135-159 53-77 (84)
230 4abx_A DNA repair protein RECN 22.4 3E+02 0.01 22.0 16.3 37 96-132 9-45 (175)
231 1m1j_C Fibrinogen gamma chain; 22.4 4.8E+02 0.016 24.3 14.2 31 207-237 85-115 (409)
232 1uii_A Geminin; human, DNA rep 22.3 1.9E+02 0.0064 21.2 5.4 35 78-112 39-73 (83)
233 3fx0_A NF-kappa-B essential mo 22.0 18 0.00061 27.4 -0.2 48 127-174 18-65 (96)
234 2nud_C RIN4, RPM1-interacting 21.9 23 0.00078 21.9 0.3 10 8-17 8-17 (35)
235 2wuj_A Septum site-determining 21.5 1E+02 0.0035 20.6 3.7 30 131-160 25-54 (57)
236 2xnx_M M protein, M1-BC1; cell 21.3 3.2E+02 0.011 22.0 9.2 14 224-237 70-83 (146)
237 2zdi_C Prefoldin subunit alpha 21.2 3E+02 0.01 21.5 9.5 42 218-259 96-137 (151)
238 2xzr_A Immunoglobulin-binding 20.7 2.8E+02 0.0095 21.0 15.8 20 137-156 10-29 (114)
239 1hjb_A Ccaat/enhancer binding 20.7 2.5E+02 0.0086 20.5 7.2 17 207-223 44-60 (87)
240 1dh3_A Transcription factor CR 20.6 1.9E+02 0.0066 19.1 5.0 26 87-112 24-49 (55)
No 1
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=99.35 E-value=3.7e-12 Score=95.07 Aligned_cols=74 Identities=16% Similarity=0.263 Sum_probs=65.7
Q ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy5601 196 KLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQ 269 (270)
Q Consensus 196 ~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~~~ 269 (270)
+|+.+++++..+++.++.+|+.++.+|+.++.+|++.+..++.++.|++.+.+.||+||++|+++|+||++|+.
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~ 76 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAE 76 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999974
No 2
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=99.27 E-value=4e-11 Score=87.96 Aligned_cols=68 Identities=25% Similarity=0.362 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy5601 202 HAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQ 269 (270)
Q Consensus 202 e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~~~ 269 (270)
.++..+++.++.+|++++.+|..++.+|++++..++.++.+++.+.+.||+||++|+++|++|++|+.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~~ 70 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLLE 70 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999874
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.88 E-value=6e-06 Score=70.84 Aligned_cols=21 Identities=0% Similarity=0.007 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q psy5601 240 RRIIDTLNHQLAGRVAELATI 260 (270)
Q Consensus 240 ~~El~~l~e~ld~ki~eL~el 260 (270)
...+..+...+......+..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ 256 (284)
T 1c1g_A 236 ETRAEFAERSVTKLEKSIDDL 256 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 4
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=98.57 E-value=2.4e-09 Score=90.71 Aligned_cols=64 Identities=42% Similarity=0.497 Sum_probs=40.7
Q ss_pred CcccccccccccchhhhhHHHHHH----HHHhh------------HHHhhHHHHHhhhhchhhhhh-------c-ccccc
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLD------------TLLASQDAQRRIIDTLNHQLA-------G-RVADS 56 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~------------~~~~~~~~~~~~~~~en~~l~-------~-~~~ss 56 (270)
|+|+||+++||||.|+|||+|||| +..+. .++|++++|+++++..+.-+. . ....+
T Consensus 70 l~Y~kasp~FHqW~d~~~~~v~GLnF~Se~eA~~F~~~~~~ale~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (168)
T 1i2h_A 70 MTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEKMELTSTPSQESAGGDLQSPLTPES 149 (168)
T ss_dssp CCEEEEETTEEEEEETTTTEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCC-----CCCCSCSCCC-
T ss_pred cEEeeCCcccceeecCCCcEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccCccccCCCCCccc
Confidence 899999999999999999999999 44444 789999999999986632211 1 23347
Q ss_pred cccchhHH
Q psy5601 57 ANAKKWEI 64 (270)
Q Consensus 57 ~n~~~~E~ 64 (270)
+||.+.|.
T Consensus 150 ~~~~~~~~ 157 (168)
T 1i2h_A 150 INGTDDER 157 (168)
T ss_dssp --------
T ss_pred ccCCCCcc
Confidence 88887775
No 5
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=98.41 E-value=1e-08 Score=82.44 Aligned_cols=39 Identities=59% Similarity=0.810 Sum_probs=27.2
Q ss_pred CcccccccccccchhhhhHHHHHH----HHHhh------------HHHhhHHHHH
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLD------------TLLASQDAQR 39 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~------------~~~~~~~~~~ 39 (270)
|+|++|+++||||.|+|||+|||| +..+. .++|++|+|+
T Consensus 65 l~y~~a~p~FhqW~d~~~~~~~GLnF~s~~eA~~F~~~~~~~~~~l~~~~~~~~~ 119 (120)
T 1ddw_A 65 MTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQE 119 (120)
T ss_dssp CCCEECSSSEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHC--------
T ss_pred cEEeeCCccccEEEcCCCcEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999 55544 5566666665
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=98.34 E-value=0.00024 Score=61.08 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 83 STANVEEWKKQLQAYKEENQKLKTKYIELEA 113 (270)
Q Consensus 83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele~ 113 (270)
....|.-|+.....|+.....|+..+.+--.
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqe 38 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQE 38 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556888888888888888887777766544
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.30 E-value=0.00015 Score=64.69 Aligned_cols=124 Identities=11% Similarity=0.178 Sum_probs=57.9
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601 80 LQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAV 159 (270)
Q Consensus 80 l~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~L 159 (270)
||.....+..+...+..+..+...|...+..+. .....+...+..++.++..++.+|..++.++...
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~-------------~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~ 79 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKN-------------KAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555544444444444444 3334444455555555555555555555555555
Q ss_pred hhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy5601 160 EDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE 217 (270)
Q Consensus 160 E~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~ 217 (270)
+.+-..+. -..++..|..+|+.++.++...+.+|..++..++.+...+..+......
T Consensus 80 ~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~ 136 (256)
T 3na7_A 80 QKKMSEIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLE 136 (256)
T ss_dssp HHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44411111 1223344444444444444444444444444444444444444443333
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.25 E-value=0.0003 Score=62.70 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=32.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5601 192 EEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVA 255 (270)
Q Consensus 192 ~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~ 255 (270)
.++..|..+++.+..++..++.++.++..++..++..+..+......+..++..+...++..+.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~ 153 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVK 153 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555444444444444443
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.85 E-value=0.0032 Score=54.03 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=10.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q psy5601 207 KCKLLSQENAELQAAISLVQAQLD 230 (270)
Q Consensus 207 ~~e~~~~r~~~lE~~i~~LE~~Le 230 (270)
-+++++.+...+=.++.-|+.+|.
T Consensus 131 SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 131 SLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.60 E-value=0.0025 Score=67.54 Aligned_cols=93 Identities=23% Similarity=0.249 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHH
Q psy5601 96 AYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTS 175 (270)
Q Consensus 96 ~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~ 175 (270)
.++..+..|..+|.++.. ++.+.+.++..+...+..++ ..+..|++.|+.++++++....+...+..++..
T Consensus 918 ~l~~~~~~LE~kl~eLq~------rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~ 988 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQR------KIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRMSEEEAKNATNRVLS 988 (1080)
T ss_dssp ---------------------------------------CHHHH---HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666665554 44444455555555544443 234566666666666666543333344444444
Q ss_pred HHHhhHHHHHHhhhhHHHHHHH
Q psy5601 176 VRSKNETLDSELKCRDEEVKKL 197 (270)
Q Consensus 176 L~~~l~~lE~~l~~~d~el~~L 197 (270)
|..+++.++..+.....+...+
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333333
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.22 E-value=0.062 Score=62.51 Aligned_cols=155 Identities=15% Similarity=0.161 Sum_probs=81.3
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601 80 LQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAV 159 (270)
Q Consensus 80 l~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~L 159 (270)
|.++...|...+.+|...+-..+.-.....++=. .+..=..+....+..+++.++.+.....++...+..++
T Consensus 1929 L~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~------~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e-- 2000 (3245)
T 3vkg_A 1929 LRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLK------QMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAY-- 2000 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4677888888888888777665554443332211 11111112233344566677777777777766666552
Q ss_pred hhh-hhhhHH--HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 160 EDK-CKAAVE--LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQ 236 (270)
Q Consensus 160 E~~-~~eipe--l~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~ 236 (270)
.. ..-.|. ++.++..++.++......+..++..|.++...+..+..+.+.+..+++.++..+...+.+|..+..=.
T Consensus 2001 -~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2001 -ADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp -HCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222332 45555555555555555555555555555555555555555555555555555555555555444444
Q ss_pred HHHHHHH
Q psy5601 237 DAQRRII 243 (270)
Q Consensus 237 ~~~~~El 243 (270)
..+.+|-
T Consensus 2080 ~gL~~Ek 2086 (3245)
T 3vkg_A 2080 DNLNSER 2086 (3245)
T ss_dssp HHHHHHH
T ss_pred Hhhhhcc
Confidence 4443333
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.07 E-value=0.1 Score=43.74 Aligned_cols=84 Identities=17% Similarity=0.128 Sum_probs=46.1
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5601 176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVA 255 (270)
Q Consensus 176 L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~ 255 (270)
|...+..|+..-..++.++..|+..++.=...+......+.+++.+|..|..+|+.++.+......+...|.+.+..+-.
T Consensus 53 Lq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 53 LQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444454444443344444555566666677777777777777666666666666666555444
Q ss_pred HHHH
Q psy5601 256 ELAT 259 (270)
Q Consensus 256 eL~e 259 (270)
+...
T Consensus 133 e~a~ 136 (168)
T 3o0z_A 133 EKNN 136 (168)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 3333
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.05 E-value=0.018 Score=60.94 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=2.1
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601 129 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 129 ~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE 160 (270)
.+|...+.+|...|...+.+...|..++..++
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~ 955 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE 955 (1080)
T ss_dssp ---------------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444555555554555555554444333
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.95 E-value=0.083 Score=42.24 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5601 201 KHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELAT 259 (270)
Q Consensus 201 ~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~e 259 (270)
+.+..+.+..+..+...++..|.+++.++++.......+...-+.+.+..+.+..+|.+
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666665555555554444444444443
No 15
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.87 E-value=0.12 Score=41.25 Aligned_cols=49 Identities=27% Similarity=0.357 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHH
Q psy5601 88 EEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSEL 142 (270)
Q Consensus 88 ~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL 142 (270)
..+..++..+.++...|...+...+. ...+|+..+..+...+..|..+|
T Consensus 9 ~~~e~E~~~~~eel~~lke~l~k~e~------~r~ele~~~~~l~~Ek~~L~~qL 57 (129)
T 2fxo_A 9 AEREKEMASMKEEFTRLKEALEKSEA------RRKELEEKMVSLLQEKNDLQLQV 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777665554 34444444444444444444333
No 16
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=96.87 E-value=5.6e-05 Score=61.34 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=23.9
Q ss_pred CcccccccccccchhhhhHHHHHH----HHHhhH
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDT 30 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~ 30 (270)
|+|+|++++|+||.|+| +|||| +....+
T Consensus 79 l~Ynkatp~FHqWrd~~--~~yGL~F~S~~dA~~ 110 (130)
T 3syx_A 79 LIYNKVTPTFHHWKIDD--KKFGLTFQSPADARA 110 (130)
T ss_dssp CEEEEEETTEEEEEETT--EEEEEEESSHHHHHH
T ss_pred ceEEecccccccccccC--eEeecccCCHHHHHH
Confidence 78999999999999998 99999 555443
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.83 E-value=0.011 Score=57.60 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=46.4
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5601 174 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGR 253 (270)
Q Consensus 174 ~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~k 253 (270)
+.+.+.+..+..+...+..++..++.+++......+.++.++..++.+++..+..+.+++++......+++.+.+.+++-
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444444444444444455555555555555566666666666666666666666666666666666666666665554
Q ss_pred H
Q psy5601 254 V 254 (270)
Q Consensus 254 i 254 (270)
-
T Consensus 585 ~ 585 (597)
T 3oja_B 585 P 585 (597)
T ss_dssp -
T ss_pred C
Confidence 3
No 18
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.83 E-value=0.16 Score=42.09 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=12.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
+++.-++.+..++.++..+-..+..|+.
T Consensus 36 Rae~aE~k~~eLEeeL~~v~~nlKsLE~ 63 (155)
T 2efr_A 36 RAELSEGKSAELEEELKTVTNNLKSLEA 63 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 3333444444444444444444444444
No 19
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.81 E-value=0.17 Score=41.92 Aligned_cols=137 Identities=19% Similarity=0.170 Sum_probs=65.0
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601 79 ALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA 158 (270)
Q Consensus 79 al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~ 158 (270)
-|-.+-.....++-.|...+.++.....+|..++. ++..+..+..++...+.++.+|...+.+
T Consensus 7 KLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~-----------------~r~~~~~l~~~~~~~~~e~~~L~~~l~~ 69 (154)
T 2ocy_A 7 QLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQ-----------------LKEDYNTLKRELSDRDDEVKRLREDIAK 69 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH-----------------HHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33444444555666666666666666666655542 1123444444555555566555554421
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh-hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 159 VEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA-KHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 159 LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e-~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
-. ..-..+|.....++.|+.+|... -++...=+-.+......++.++..|+.+|.+....++
T Consensus 70 E~-----------------~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 70 EN-----------------ELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HH-----------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11122233333333444444333 1111111222222233366666666666666666666
Q ss_pred HHHHHHHHHHHH
Q psy5601 238 AQRRIIDTLNHQ 249 (270)
Q Consensus 238 ~~~~El~~l~e~ 249 (270)
.+...|..|+..
T Consensus 133 ~lq~ql~~LK~v 144 (154)
T 2ocy_A 133 TLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 20
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.71 E-value=0.2 Score=41.52 Aligned_cols=112 Identities=14% Similarity=0.190 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy5601 138 LDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE 217 (270)
Q Consensus 138 le~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~ 217 (270)
++.+|...++-.+....++..|+. ++..+...|..||..-......-.....+|..|..++..++.|-..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEe----------eL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~ 95 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEE----------ELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEF 95 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444444444443 2333333333333322222222222333344444555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELAT 259 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~e 259 (270)
++..|.-|+..+..+......-+.....+.+.+|.-+.+|+.
T Consensus 96 AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~ 137 (155)
T 2efr_A 96 AERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555444444444444444455555544444443
No 21
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.70 E-value=0.22 Score=41.79 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=14.2
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi 156 (270)
..+..|......++.++..|..++
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666666666655
No 22
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.70 E-value=0.07 Score=41.06 Aligned_cols=22 Identities=0% Similarity=0.098 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q psy5601 135 NETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 135 ~eele~eL~~~e~Eie~L~~qi 156 (270)
|+.++..+..+..+.++...++
T Consensus 4 MdaIKkKm~~lk~e~e~a~dra 25 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRA 25 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333
No 23
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.65 E-value=0.064 Score=41.15 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=13.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE 160 (270)
.|+.++..+..+..+.++...++..++
T Consensus 3 ~md~iKkKm~~lk~e~e~a~d~ae~~e 29 (101)
T 3u59_A 3 SMEAIKKKMQMLKLDKENAIDRAEQAE 29 (101)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555444443333
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.21 E-value=0.07 Score=51.80 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=27.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601 205 EDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267 (270)
Q Consensus 205 ~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~ 267 (270)
.++.+....++...+..+......++.++.+...++..+...++.+.....+++.++.+|..+
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 515 KERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444444444444444444444444443
No 25
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=96.16 E-value=0.00044 Score=54.58 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=24.5
Q ss_pred CcccccccccccchhhhhHHHHHH----HHHhhH
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDT 30 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~ 30 (270)
|+|++++.+|+||+|+| +|||| +....+
T Consensus 68 ~~y~~~~p~Fh~w~~~~--~~~GLnF~se~eA~~ 99 (112)
T 1evh_A 68 LKYNQATQTFHQWRDAR--QVYGLNFGSKEDANV 99 (112)
T ss_dssp CCCBCCSSSEEEEECSS--CEEEEEESSHHHHHH
T ss_pred ceEEecCccceeEecCC--EEEEEecCCHHHHHH
Confidence 78999999999999998 89999 666544
No 26
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=95.94 E-value=0.083 Score=39.70 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=37.1
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5601 179 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLD 230 (270)
Q Consensus 179 ~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Le 230 (270)
...+++.....+..+.++|..++.++.+.+..+...+.+++..|.+++.+|+
T Consensus 36 ~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 36 IKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555566666777777777777777888888888888888888777665
No 27
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=95.76 E-value=0.00088 Score=53.10 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=24.2
Q ss_pred CcccccccccccchhhhhHHHHHH----HHHhhH
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDT 30 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~ 30 (270)
|+|++++.+|+||.|+| +|||| +....+
T Consensus 70 l~y~~~~p~FH~w~~~~--~~~GLnF~se~eA~~ 101 (115)
T 1egx_A 70 VKYNQATPNFHQWRDAR--QVWGLNFGSKEDAAQ 101 (115)
T ss_dssp CCCCCSSTTEEEEESSS--CEEEEEESSHHHHHH
T ss_pred ceEEecCccceEEecCC--EEEEEecCCHHHHHH
Confidence 78999999999999998 89999 665443
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.61 E-value=0.17 Score=40.28 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLN 247 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~ 247 (270)
+...|..|+.+|..++......-.+...|.
T Consensus 80 ~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 109 (129)
T 3tnu_B 80 ARNKLAELEEALQKAKQDMARLLREYQELM 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544444433333
No 29
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.51 E-value=3.6 Score=48.31 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=46.3
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy5601 177 RSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAE 256 (270)
Q Consensus 177 ~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~e 256 (270)
+.++..++.++......+...+..+.++.+++..+..+...+-.+...|+.+++..+.+......=+..|-++...=...
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence 34444445555555555554444455555555555555555555555555555555555555555555555555554445
Q ss_pred HHHHHHHHHHh
Q psy5601 257 LATIHREINTA 267 (270)
Q Consensus 257 L~el~~~l~~~ 267 (270)
+..+...+.+|
T Consensus 2093 ~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2093 SENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 55555444443
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.48 E-value=0.26 Score=36.51 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=45.7
Q ss_pred hHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 180 NETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 180 l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
++.||.++...-..|.-|+.++++|..+...+...+.++......|..+.+.++..+......+..|.+..
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666666666777777777766666666666666666666666666666666666666655544
No 31
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=95.45 E-value=0.00089 Score=53.32 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=24.5
Q ss_pred CcccccccccccchhhhhHHHHHH----HHHhhHH
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDTL 31 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~~ 31 (270)
|+|++++.+|+||.|+ |+|||| +....++
T Consensus 72 ~~y~~~~p~Fh~w~~~--~~~~GL~F~se~eA~~F 104 (118)
T 1xod_A 72 LVYNKVTPTFHHWRIG--DKKFGLTFQSPADARAF 104 (118)
T ss_dssp CEEEEEETTEEEEEET--TEEEEEEESSHHHHHHH
T ss_pred cEEEecCCcceEEEeC--CEEEEEecCCHHHHHHH
Confidence 7899999999999997 899999 6655443
No 32
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.34 E-value=0.14 Score=40.95 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 217 ELQAAISLVQAQLDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 217 ~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e 248 (270)
.+...|..|+.+|..++......-.+...|.+
T Consensus 81 ~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 81 QIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666655555444444443
No 33
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.26 E-value=0.72 Score=35.26 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKL 197 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L 197 (270)
.|..|+.+........+.+..++...+.. ......++.+|..+|.-+|..++.....+...
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~---~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEER---SKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333321 11222333444444444444444444333333
No 34
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=95.05 E-value=0.0016 Score=52.42 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=23.8
Q ss_pred CcccccccccccchhhhhHHHHHH----HHHhhH
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDT 30 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~ 30 (270)
|+|+|++.+|+||.|++ ++||| +....+
T Consensus 81 l~Y~~~~p~FH~w~~~~--~~~GLnF~se~eA~~ 112 (126)
T 2jp2_A 81 LVYTKANPTFHHWKVDN--RKFGLTFQSPADARA 112 (126)
T ss_dssp CCEEEEETTEEEEECSS--SEEEEEESSHHHHHH
T ss_pred ceEEecCCcceEEEcCC--EEEEEecCCHHHHHH
Confidence 78999999999999997 78999 665443
No 35
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.02 E-value=0.77 Score=35.09 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=31.9
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5601 172 ELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQ 228 (270)
Q Consensus 172 e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~ 228 (270)
+++.++..|..|+.++.+.+.++..|...+..-...+..++..+..++..+++|-..
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666555555555555555555555555544443
No 36
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.45 E-value=1.4 Score=34.61 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=12.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 210 LLSQENAELQAAISLVQAQLDTLLA 234 (270)
Q Consensus 210 ~~~~r~~~lE~~i~~LE~~Lee~~~ 234 (270)
.+.-.+.+|+.+|.+|..+|.=++.
T Consensus 80 ~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 80 NASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555544
No 37
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.39 E-value=1.2 Score=33.80 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=10.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhH
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKH 157 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~ 157 (270)
.|..|+.+........+.+..++.
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k 33 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKK 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 38
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=94.34 E-value=0.7 Score=33.81 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5601 216 AELQAAISLVQAQLDTLLA 234 (270)
Q Consensus 216 ~~lE~~i~~LE~~Lee~~~ 234 (270)
.++..+|..++.+|+....
T Consensus 44 ~~L~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 44 VALQKKLKGTEDELDKYSE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 39
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.31 E-value=0.33 Score=39.34 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=6.2
Q ss_pred HHhHHHHHHHHHHHHHH
Q psy5601 210 LLSQENAELQAAISLVQ 226 (270)
Q Consensus 210 ~~~~r~~~lE~~i~~LE 226 (270)
.+..++.+++.++..|+
T Consensus 114 ~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 114 ELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 40
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.91 E-value=1.8 Score=33.84 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=9.1
Q ss_pred HHHhhhhhchHHHHHHHHH
Q psy5601 126 KELTSVRSKNETLDSELKC 144 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~ 144 (270)
..+..|...++.|+..+..
T Consensus 10 ~~~~~L~~E~e~~k~K~~~ 28 (111)
T 2v66_B 10 ADNQRLKYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444
No 41
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=93.81 E-value=0.44 Score=35.15 Aligned_cols=56 Identities=13% Similarity=0.111 Sum_probs=28.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5601 204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELAT 259 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~e 259 (270)
+...++.+..++++++.++..|+.+|..++.+.++.+.+...++..+...+.-|..
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~ 59 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDV 59 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455556666666666666666666666666665555555555555544444433
No 42
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=93.66 E-value=0.92 Score=33.74 Aligned_cols=52 Identities=10% Similarity=0.161 Sum_probs=26.6
Q ss_pred HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 199 NAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 199 ~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
..+++...+.+..-....++|..+..|...+.++--..-.++..+..|.+.+
T Consensus 28 ~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 28 EDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555555555555544443
No 43
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=93.63 E-value=1.6 Score=35.71 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q psy5601 223 SLVQAQLDTLLAS 235 (270)
Q Consensus 223 ~~LE~~Lee~~~~ 235 (270)
.-++..|+....+
T Consensus 83 ~~~E~dLeraeeR 95 (147)
T 2b9c_A 83 VIIESDLERAEER 95 (147)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 44
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.54 E-value=0.84 Score=36.93 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=32.5
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 175 SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLA 234 (270)
Q Consensus 175 ~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~ 234 (270)
.++..++.++..+..++.++.+|+.++..+..+++.+...+.++..++..|+.++..++.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555556666666665555555555555555555555555555555443
No 45
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=93.43 E-value=1 Score=35.14 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=31.7
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHH
Q psy5601 129 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTS 175 (270)
Q Consensus 129 ~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~ 175 (270)
..|..++...+..|..+..+|..|+..+..+......||.|+.|++-
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~I 73 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADI 73 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777777776666555667777666653
No 46
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.35 E-value=2 Score=32.73 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=14.8
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 130 SVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 130 ~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
.++..+.+++.++...+.++..|...+
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344455555555555555665555555
No 47
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=93.17 E-value=1.5 Score=32.01 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=24.0
Q ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5601 197 LTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGR 253 (270)
Q Consensus 197 L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~k 253 (270)
|+.+.+...++.+.+.......+.+...++.++..+......++.++....+.+...
T Consensus 11 lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443333333333
No 48
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=92.71 E-value=2.9 Score=32.74 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=34.8
Q ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601 197 LTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAG 252 (270)
Q Consensus 197 L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ 252 (270)
++..++++..+.+.......++|..+..|...+.+.--..-.++..+..|.+.+.=
T Consensus 46 ~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 46 LAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555666677777777777777666666666666666665554
No 49
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=92.18 E-value=2.8 Score=32.66 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=41.8
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 172 ELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA 251 (270)
Q Consensus 172 e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld 251 (270)
+++.|...|..+|..|..+..+|..|+.++......+ .++.=|+.++.-...+-..=+.+++.+-++...|..++.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 100 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHH
Confidence 3455566666666666666666666655544322222 234445555555555555555555555555555555444
Q ss_pred HHH
Q psy5601 252 GRV 254 (270)
Q Consensus 252 ~ki 254 (270)
.+.
T Consensus 101 ~Lq 103 (110)
T 2v4h_A 101 QLQ 103 (110)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 50
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.18 E-value=4.3 Score=33.45 Aligned_cols=44 Identities=5% Similarity=0.008 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIH 261 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~ 261 (270)
+...|......-..++.+.+.++..+......++.....|.+|.
T Consensus 99 AN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 99 ANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555555555555555555555553
No 51
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.01 E-value=0.8 Score=37.03 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 216 AELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQ 249 (270)
Q Consensus 216 ~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ 249 (270)
..++.++..|+.+|.+....++.+...|..|+..
T Consensus 99 ~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 99 YAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHHHHHHHHHTTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366666666666666666666665555555443
No 52
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=91.45 E-value=2.1 Score=32.53 Aligned_cols=36 Identities=8% Similarity=0.215 Sum_probs=20.1
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
....++...+..|...+..+..++..+...+..++.
T Consensus 10 ~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 10 TKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444445555555555566666666666666653
No 53
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.35 E-value=4.2 Score=31.71 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=9.2
Q ss_pred HHhhHHHHHHHHHHhHHHHHHHHH
Q psy5601 198 TNAKHAVEDKCKLLSQENAELQAA 221 (270)
Q Consensus 198 ~~e~e~l~~~~e~~~~r~~~lE~~ 221 (270)
+...+.+..++-.++..|.++|..
T Consensus 48 r~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 48 RAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHH
Confidence 333333333333333333333333
No 54
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.35 E-value=3.2 Score=30.71 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601 188 KCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL 232 (270)
Q Consensus 188 ~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~ 232 (270)
...+.++..|+..++ .+.--+.+|+.+|.+|..+|.=+
T Consensus 45 ~~~E~d~~~LrkdvD-------~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 45 EEAENTLQSFRQDVD-------NASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHTTHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544 44444566777777777666544
No 55
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=91.13 E-value=3.6 Score=30.53 Aligned_cols=11 Identities=9% Similarity=-0.082 Sum_probs=4.0
Q ss_pred HHHHHHhhhhH
Q psy5601 181 ETLDSELKCRD 191 (270)
Q Consensus 181 ~~lE~~l~~~d 191 (270)
...+......+
T Consensus 31 ~k~e~~rkele 41 (89)
T 3bas_A 31 AKTERIKKELE 41 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 56
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=90.82 E-value=2.8 Score=30.25 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=36.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601 210 LLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI 264 (270)
Q Consensus 210 ~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l 264 (270)
.+..++++++.++.+|+.++..++.+.++.+.+...+...+-..+.-|..-=.+|
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL 58 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4566777777777777777777777777777777666666666655554433333
No 57
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=90.51 E-value=0.026 Score=45.36 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=28.2
Q ss_pred CcccccccccccchhhhhHHHHHH----HHHhhHHHhhHHHHHhhhh
Q psy5601 1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDTLLASQDAQRRIID 43 (270)
Q Consensus 1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~~~~~~~~~~~~~~ 43 (270)
|.|++++.+|++|+|.+ .|||| +.. |.-...+-+++++.
T Consensus 69 ~~y~~~~~~Fh~w~~~~--~~~GL~F~se~e--A~~F~~~~~~al~~ 111 (130)
T 1qc6_A 69 LKYNQATPTFHQWRDAR--QVYGLNFASKEE--ATTFSNAMLFALNI 111 (130)
T ss_dssp CEEEEEETTEEEEECSS--CEEEEEESCHHH--HHHHHHHHHHHHHH
T ss_pred cEEeccCCeeEEEEcCC--EEEEEecCCHHH--HHHHHHHHHHHHHH
Confidence 78999999999999996 89999 444 34444444444433
No 58
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=90.08 E-value=3.3 Score=32.73 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=30.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 192 EEVKKLTNAKHAVEDKCKLLSQ----ENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA 251 (270)
Q Consensus 192 ~el~~L~~e~e~l~~~~e~~~~----r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld 251 (270)
.-|..|+.+++.+...++.+.. .+..++.+|..|+.+|++.+........+...|...++
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443322 22336667777777777766555555555555554444
No 59
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=89.13 E-value=7.9 Score=31.36 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=5.4
Q ss_pred HHHHHHHHhhHHh
Q psy5601 147 EEVKKLTNAKHAV 159 (270)
Q Consensus 147 ~Eie~L~~qi~~L 159 (270)
.++..|+.....+
T Consensus 29 ~eN~~Lk~e~e~l 41 (155)
T 2oto_A 29 HENKDLKARLENA 41 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 60
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=88.22 E-value=4.4 Score=31.96 Aligned_cols=61 Identities=11% Similarity=0.225 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHH-------HHHHHHHHHhhH
Q psy5601 85 ANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCR-------DEEVKKLTNAKH 157 (270)
Q Consensus 85 a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~-------e~Eie~L~~qi~ 157 (270)
..|+.|+.+++.++.++..+...-+. .+ .+|...|-+|+++|... -.|.+.|+.+++
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~---------~v-------~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQR---------VV-------LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666666666332211 22 33444555555555543 334555666555
Q ss_pred Hhhh
Q psy5601 158 AVED 161 (270)
Q Consensus 158 ~LE~ 161 (270)
.+..
T Consensus 79 ~l~~ 82 (120)
T 3i00_A 79 ELRR 82 (120)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4443
No 61
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=88.11 E-value=15 Score=34.21 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 168 ELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 168 el~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
.|..++++++..+..+++....-+--+-.|+. +|..+......|+.++|..|..++.+|++.....+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMALMA---SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544433333332 22233322334555555555555555555555444
No 62
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=88.09 E-value=7 Score=29.47 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=13.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE 160 (270)
.++.++..|.....+=..|-.++..|+
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lE 31 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVE 31 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544544444444
No 63
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=88.07 E-value=4.4 Score=29.81 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 96 AYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 96 ~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
-+--+...|+-+|.+++. .--.++....+.++.+..|..+|..++.||.+|+.++
T Consensus 23 ~L~qEi~~Lr~kv~elEn------ErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELEN------ERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 556677778888888886 6666777778888888888888888888988888776
No 64
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=88.06 E-value=1.5 Score=35.75 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 164 KAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRII 243 (270)
Q Consensus 164 ~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El 243 (270)
+..+.|...+..++..+............++..+...+..+..+...++..++-.+.--..|.+.|+.++.....++..|
T Consensus 59 ~~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKqlEadl 138 (146)
T 2xnx_M 59 NRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQVEKDL 138 (146)
T ss_dssp TTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-------------------------
T ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677777776666666677777777777777777777777777777777888888888887776655554
Q ss_pred H
Q psy5601 244 D 244 (270)
Q Consensus 244 ~ 244 (270)
.
T Consensus 139 ~ 139 (146)
T 2xnx_M 139 L 139 (146)
T ss_dssp -
T ss_pred H
Confidence 3
No 65
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.96 E-value=6.5 Score=28.97 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA 251 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld 251 (270)
+-+.|.-+..++.++..++..|..+.++++...+.+..+...|.+++.
T Consensus 18 avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 18 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444433333333333333333333
No 66
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=87.80 E-value=8.3 Score=30.08 Aligned_cols=64 Identities=11% Similarity=0.196 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKL 197 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L 197 (270)
.++.|...+..+...+..+.+.-.+|+.. ......-..++..|...+...|..|.++......+
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555543 22223334444445555554444444444444333
No 67
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=87.45 E-value=6.9 Score=28.76 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=32.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601 210 LLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREIN 265 (270)
Q Consensus 210 ~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~ 265 (270)
.+-..+.+|.-+|.+++.+--..+......+.|+..|..++..+-.++..+|..|.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 34444444444455555555555555555556777777777777777777766653
No 68
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=86.81 E-value=4.3 Score=31.11 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH--HHH----Hhh---hh-----hchHHHHHHHHHHHHH
Q psy5601 83 STANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVEL--RKE----LTS---VR-----SKNETLDSELKCRDEE 148 (270)
Q Consensus 83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~el--e~e----~~~---l~-----~~~eele~eL~~~e~E 148 (270)
++..+...+.+|+.+..++.+|+..+..++. .+... .-. ++. +. .-.++.+..+..++.|
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~------~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E 83 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEA------QLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAE 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHH
Confidence 3446888999999999999999999988875 22100 000 000 00 1123566777778888
Q ss_pred HHHHHHhhHHhhh
Q psy5601 149 VKKLTNAKHAVED 161 (270)
Q Consensus 149 ie~L~~qi~~LE~ 161 (270)
+++|+..+..++.
T Consensus 84 ~erLr~~v~~lEe 96 (100)
T 1go4_E 84 CERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHhc
Confidence 8888888866665
No 69
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.31 E-value=7.4 Score=31.95 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=7.4
Q ss_pred hhHHHHHHhhhhHHHHHHHH
Q psy5601 179 KNETLDSELKCRDEEVKKLT 198 (270)
Q Consensus 179 ~l~~lE~~l~~~d~el~~L~ 198 (270)
.|..|+..+..+...|.++.
T Consensus 69 ~I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 70
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=86.22 E-value=6.1 Score=29.89 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=44.7
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 172 ELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA 251 (270)
Q Consensus 172 e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld 251 (270)
+++.|...|..+|..+..++..|..|+..+......+ .++.=|+.++.-.+..-..=+.+++.+..+-..|..++.
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~----E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~ 78 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 78 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456666777777777777777777766543322222 334445556666555555555555555544444444444
Q ss_pred HHHHH
Q psy5601 252 GRVAE 256 (270)
Q Consensus 252 ~ki~e 256 (270)
.....
T Consensus 79 ~lq~q 83 (94)
T 3jsv_C 79 QLQRE 83 (94)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 44333
No 71
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=86.17 E-value=9.1 Score=28.82 Aligned_cols=30 Identities=10% Similarity=0.147 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5601 237 DAQRRIIDTLNHQLAGRVAELATIHREINT 266 (270)
Q Consensus 237 ~~~~~El~~l~e~ld~ki~eL~el~~~l~~ 266 (270)
..+...+-.+.+.++..-..+.-....|-+
T Consensus 63 n~~~~ql~e~~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 63 SEFKRQQLELDDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 72
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.64 E-value=11 Score=29.49 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=15.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHA 158 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~ 158 (270)
.+-+++++-..+..-+..|+.-+..
T Consensus 40 ~l~~~eaQAaTCNqTV~tL~~SL~~ 64 (121)
T 3mq7_A 40 GFQDVEAQAATANHTVMALMASLDA 64 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666676666666665533
No 73
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=85.57 E-value=9.9 Score=28.70 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5601 136 ETLDSELKCRDEEVKKL 152 (270)
Q Consensus 136 eele~eL~~~e~Eie~L 152 (270)
..+..++..++.++..+
T Consensus 23 ~~l~~q~~~l~~~~~e~ 39 (117)
T 2zqm_A 23 QLVVQQKQKVQLELTEA 39 (117)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 74
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=85.15 E-value=5.6 Score=29.26 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=15.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 205 EDKCKLLSQENAELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 205 ~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
.......+.+..+.+.++.+|..+++.++...+
T Consensus 37 r~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 37 RTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555544444444
No 75
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=84.83 E-value=5.5 Score=30.14 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=33.2
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHH
Q psy5601 130 SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSV 176 (270)
Q Consensus 130 ~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L 176 (270)
.|...+..-+..|..++..|..|+..+.........+|.|+.+++--
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY 52 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIY 52 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777788888888887777776667777777776533
No 76
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.03 E-value=7.3 Score=36.51 Aligned_cols=20 Identities=5% Similarity=0.141 Sum_probs=8.5
Q ss_pred hhhchHHHHHHHHHHHHHHH
Q psy5601 131 VRSKNETLDSELKCRDEEVK 150 (270)
Q Consensus 131 l~~~~eele~eL~~~e~Eie 150 (270)
+..+..+++++-..+.--+-
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~ 428 (471)
T 3mq9_A 409 AQKGFQDVEAQAATANHTVM 428 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhcchhHH
Confidence 33344444444444433333
No 77
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=83.56 E-value=12 Score=27.87 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhH
Q psy5601 169 LRKELTSVRSKNETLDSELKCRD 191 (270)
Q Consensus 169 l~~e~~~L~~~l~~lE~~l~~~d 191 (270)
|....+.+...|..++..+..+.
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~ 92 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVM 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 78
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=83.47 E-value=12 Score=28.11 Aligned_cols=31 Identities=10% Similarity=0.230 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 219 QAAISLVQAQLDTLLASQDAQRRIIDTLNHQ 249 (270)
Q Consensus 219 E~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ 249 (270)
+..+..+...+..+......+..++..+...
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444333344333333
No 79
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=83.25 E-value=3.6 Score=29.67 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=16.4
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKHAV 159 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~~L 159 (270)
..|.+++.+|..++.+|..|+.++..+
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666666666666666443
No 80
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=83.09 E-value=17 Score=29.35 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDT 231 (270)
Q Consensus 218 lE~~i~~LE~~Lee 231 (270)
++.+.-.++..|..
T Consensus 126 ~~~~~~~~ek~ls~ 139 (155)
T 2oto_A 126 LEEKKKALELAIDQ 139 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444444
No 81
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=82.93 E-value=27 Score=33.49 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhhh--hhhhHHHHHHHHHHHHhhHHHHHHh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVEDK--CKAAVELRKELTSVRSKNETLDSEL 187 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~--~~eipel~~e~~~L~~~l~~lE~~l 187 (270)
.+......+..+..+++.....|.+.-.. .+.|..|...++.++.+|..|+..+
T Consensus 136 Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 136 QRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555444332221 3334444444444444444444443
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.97 E-value=19 Score=35.21 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=6.4
Q ss_pred HHHHHHHhhHHh
Q psy5601 148 EVKKLTNAKHAV 159 (270)
Q Consensus 148 Eie~L~~qi~~L 159 (270)
-|..|+.+++++
T Consensus 65 rINELKnqLEdl 76 (562)
T 3ghg_A 65 RINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHH
Confidence 355555555555
No 83
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=81.25 E-value=14 Score=35.85 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy5601 88 EEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK 162 (270)
Q Consensus 88 ~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~ 162 (270)
..++++.++++.+|+..+..+.. .+..+...++.....+.+-.+.+.+++.+.....+.+.+++..
T Consensus 44 ~~i~aeNeaikkrNa~aka~Ye~---------~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek~ 109 (497)
T 3iox_A 44 AALTAENTAIKKRNADAKADYEA---------KLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEKH 109 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444555555555554444432 3555666667777777777778888888887777777766653
No 84
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=81.02 E-value=21 Score=28.96 Aligned_cols=11 Identities=0% Similarity=0.066 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQ 228 (270)
Q Consensus 218 lE~~i~~LE~~ 228 (270)
++.+|..|+.+
T Consensus 99 aE~k~~eLEee 109 (147)
T 2b9c_A 99 SEGKCAELEEE 109 (147)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 85
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=80.91 E-value=5.5 Score=29.35 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=13.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHA 158 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~ 158 (270)
.++.|+..|..++.+|..|..++..
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455555555555556555555543
No 86
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=80.28 E-value=7.6 Score=30.86 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=22.3
Q ss_pred HHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601 183 LDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQ 226 (270)
Q Consensus 183 lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE 226 (270)
+++.+..+..+|.-| +++..++..+..+++.++..|..++
T Consensus 49 ~qsele~k~aeLe~l----eeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 49 LQSKLDAKKAKLSKL----EELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444555444443 5566666666666666666666544
No 87
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=80.24 E-value=3.8 Score=27.25 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q psy5601 92 KQLQAYKEENQKLKTKYIELEATK 115 (270)
Q Consensus 92 ~qL~~l~een~rL~~~i~Ele~~~ 115 (270)
.+|..|+..|.+|..+|.+++..|
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c 27 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSC 27 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777788888877777776533
No 88
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=79.71 E-value=20 Score=28.08 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=45.2
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh
Q psy5601 76 LTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 155 (270)
Q Consensus 76 l~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~q 155 (270)
|..-|..+-.....|+.|-.+|..-...|..-+....+++ . ....+|..+|..|...|+....++++|++.
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~--q-------~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG--Q-------KKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555566677777777777777777777766655533 1 223334445555555666666666666666
Q ss_pred hHHhhh
Q psy5601 156 KHAVED 161 (270)
Q Consensus 156 i~~LE~ 161 (270)
...+-.
T Consensus 101 ~~~~~~ 106 (121)
T 3mq7_A 101 NQVLSV 106 (121)
T ss_dssp HHHHHH
T ss_pred chhhhh
Confidence 544443
No 89
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=79.15 E-value=5 Score=28.92 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 219 QAAISLVQAQLDTLLASQDAQRRIIDTL 246 (270)
Q Consensus 219 E~~i~~LE~~Lee~~~~~~~~~~El~~l 246 (270)
+..|+.++.+|.++......++.++..|
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444433
No 90
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=78.22 E-value=19 Score=27.01 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=16.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 209 KLLSQENAELQAAISLVQAQLDTLLASQDAQRRIID 244 (270)
Q Consensus 209 e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~ 244 (270)
..+..++..++..|..|+..+..+......++..|.
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433
No 91
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=77.88 E-value=14 Score=26.55 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=31.3
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy5601 174 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLL 233 (270)
Q Consensus 174 ~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~ 233 (270)
+.++..|..|-..+..++.+|..|+..+.--....+.+...+-++.-.+.-|+.+|..++
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 444455666666666777777777655443344444444444444444555555544443
No 92
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=77.39 E-value=20 Score=26.79 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601 83 STANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAV 159 (270)
Q Consensus 83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~L 159 (270)
+...|..|+..--+++....---.+...+. ....|+.++.++...++.|..++..+..|++.++.+.+.|
T Consensus 19 s~eev~~lKq~RRtlKNRgyAq~CR~Kr~~-------q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 19 TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQ-------QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345577777666677766655555555544 4667778888888888888888888888887777766443
No 93
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=75.99 E-value=9.2 Score=32.44 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=25.5
Q ss_pred HHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy5601 183 LDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDT 231 (270)
Q Consensus 183 lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee 231 (270)
++.++++.+--|..|..++..|+++++....++..+..++..++.+...
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445556666666666666666666666666666666666666655543
No 94
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=75.89 E-value=4.6 Score=35.82 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy5601 92 KQLQAYKEENQKLKTKYIEL---EATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK 162 (270)
Q Consensus 92 ~qL~~l~een~rL~~~i~El---e~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~ 162 (270)
.++..+..+...|+.++... ..+.....++.++...+..+..+...|...+.....|+..|+.+++.|..+
T Consensus 24 ~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 24 AELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444555555555555433 222222335667778888888888888888888888888888888776653
No 95
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=75.78 E-value=22 Score=26.33 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLAS 235 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~ 235 (270)
++..|..|+..+..++..
T Consensus 77 i~~~i~~le~~~~~~~~~ 94 (107)
T 1fxk_A 77 LQLREKTIERQEERVMKK 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 96
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.76 E-value=8.4 Score=24.80 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=15.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy5601 203 AVEDKCKLLSQENAELQAAISLVQAQLDT 231 (270)
Q Consensus 203 ~l~~~~e~~~~r~~~lE~~i~~LE~~Lee 231 (270)
+|..+..+++.++++|+.+|..|+.+=.-
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~m 35 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQM 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444555555555555555555554333
No 97
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=74.74 E-value=28 Score=27.53 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=8.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q psy5601 245 TLNHQLAGRVAELATIHREINT 266 (270)
Q Consensus 245 ~l~e~ld~ki~eL~el~~~l~~ 266 (270)
.+...|..+..+|..-...|-+
T Consensus 100 ~le~~la~KkAEleKtqa~Ld~ 121 (125)
T 2pms_C 100 GLEKTIAAKKAELEKTEADLKK 121 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433444433
No 98
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=74.63 E-value=3.9 Score=40.23 Aligned_cols=85 Identities=13% Similarity=0.186 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 168 ELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLN 247 (270)
Q Consensus 168 el~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~ 247 (270)
.|.++......+-..|+......+.+...|......-.+..+.+..+..+.+..+..+....+....+-..++.++....
T Consensus 367 ~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~ 446 (575)
T 2i1j_A 367 RLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDAR 446 (575)
T ss_dssp ---------------------------------------------------------------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555544433334444445555555555555555555555554444444444444
Q ss_pred HHHhH
Q psy5601 248 HQLAG 252 (270)
Q Consensus 248 e~ld~ 252 (270)
+.+..
T Consensus 447 ~~~~~ 451 (575)
T 2i1j_A 447 RKQDE 451 (575)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 99
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=74.42 E-value=9.7 Score=36.33 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=47.4
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601 121 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 200 (270)
Q Consensus 121 ~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e 200 (270)
+-++..++.++...++.|.++......+|.. +...+..+..+..+...|..+|..++..+..++.++..+...
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGK-------RRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWR 105 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555555554444433 322234567788888888999999988888888888877665
No 100
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=74.24 E-value=11 Score=36.48 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=46.5
Q ss_pred HHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601 122 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 200 (270)
Q Consensus 122 ~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e 200 (270)
-++..++.++...++.|.++......+|-.+.+ .+..+..+..+...|..+|..++..+..++.++..+...
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~-------~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~ 107 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFK-------AKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQ 107 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555566666555555555543332 234456788888888888888888888888888776655
No 101
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=74.08 E-value=3.5 Score=27.79 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=20.8
Q ss_pred HHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHH
Q psy5601 65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAY 97 (270)
Q Consensus 65 el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l 97 (270)
.+..|-..|.+|..+|.++...+..++.+|+.+
T Consensus 17 ~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 17 RIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666667777777777666666666555543
No 102
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=73.68 E-value=31 Score=33.30 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Q psy5601 120 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLT 198 (270)
Q Consensus 120 ~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~ 198 (270)
.+-++...+.++...++.|+++......+|..+.+.-..-+.. +..+..|..+...|..+|..++..+..++.++..+.
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666666665555555443321000000 124567778888888888888888888887777765
Q ss_pred Hh
Q psy5601 199 NA 200 (270)
Q Consensus 199 ~e 200 (270)
..
T Consensus 151 ~~ 152 (501)
T 1wle_A 151 LR 152 (501)
T ss_dssp TT
T ss_pred Hh
Confidence 55
No 103
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=73.21 E-value=25 Score=25.80 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 203 AVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIID 244 (270)
Q Consensus 203 ~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~ 244 (270)
++..+++.+...++.|...|+.+..+|..++.++..+-..|.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666677777777777777776666655554
No 104
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=72.54 E-value=27 Score=25.97 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5601 214 ENAELQAAISLVQAQLDTL 232 (270)
Q Consensus 214 r~~~lE~~i~~LE~~Lee~ 232 (270)
.++.++..+..|...+..+
T Consensus 71 ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 71 DKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444333
No 105
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=71.60 E-value=20 Score=24.01 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601 227 AQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREIN 265 (270)
Q Consensus 227 ~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~ 265 (270)
..+............++..+...++....+|..++..|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~ 50 (60)
T 3htk_A 12 NQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVI 50 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444444443
No 106
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=68.87 E-value=5.2 Score=39.36 Aligned_cols=35 Identities=9% Similarity=0.163 Sum_probs=12.9
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE 160 (270)
.++..+..+|.+++.+......++.+-...+..|+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 369 (575)
T 2i1j_A 335 KKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLE 369 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444444444444444444444444333333333
No 107
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=68.61 E-value=37 Score=25.97 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHhHH
Q psy5601 201 KHAVEDKCKLLSQE 214 (270)
Q Consensus 201 ~e~l~~~~e~~~~r 214 (270)
++-|.+.+++.+.-
T Consensus 32 VdlLKD~LEe~eE~ 45 (103)
T 4h22_A 32 VDTLKDMLLELEEQ 45 (103)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 108
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.33 E-value=15 Score=25.37 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 201 KHAVEDKCKLLSQENAELQAAISLVQAQLDTLLA 234 (270)
Q Consensus 201 ~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~ 234 (270)
++.+..+++.+..+|.+|..+|..|+.++.-++.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666555555443
No 109
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=67.61 E-value=25 Score=26.60 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHH
Q psy5601 144 CRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETL 183 (270)
Q Consensus 144 ~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~l 183 (270)
+++.||..|.++|..||.--+.+..|+..+..|..+|+..
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3566777777777666665566666666666666666554
No 110
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=67.42 E-value=18 Score=26.21 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQ 249 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ 249 (270)
+..++..++.+++-.+..|..|...+..-....+.+...+..|.+.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444333
No 111
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=67.33 E-value=21 Score=25.83 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=6.4
Q ss_pred HHHHHHhhHHHHHHhhhh
Q psy5601 173 LTSVRSKNETLDSELKCR 190 (270)
Q Consensus 173 ~~~L~~~l~~lE~~l~~~ 190 (270)
++.|+.+|.=.|..|..+
T Consensus 16 i~~LE~klAfqE~tIeeL 33 (78)
T 3efg_A 16 LVELETRLSFQEQALTEL 33 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 112
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=67.22 E-value=34 Score=24.97 Aligned_cols=15 Identities=7% Similarity=0.102 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy5601 223 SLVQAQLDTLLASQD 237 (270)
Q Consensus 223 ~~LE~~Lee~~~~~~ 237 (270)
..++.+|..++....
T Consensus 38 ~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 38 AEKEREMAEMRARMQ 52 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 113
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=65.94 E-value=45 Score=25.89 Aligned_cols=29 Identities=7% Similarity=0.013 Sum_probs=14.6
Q ss_pred HhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 128 LTSVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 128 ~~~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
+++-...|..|...+..-+..+..|+.-.
T Consensus 40 ~E~~k~qV~~L~~~~q~sE~~L~~Lqq~f 68 (112)
T 1x79_B 40 SEDSSHQISALVLRAQASEILLEELQQGL 68 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555444
No 114
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=65.75 E-value=36 Score=24.78 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy5601 92 KQLQAYKEENQKLKTKYIELEA 113 (270)
Q Consensus 92 ~qL~~l~een~rL~~~i~Ele~ 113 (270)
.+|+.+-..++.|..+|..++.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~ 43 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQT 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555543
No 115
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=65.44 E-value=37 Score=24.76 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHhhHHHHHHh
Q psy5601 166 AVELRKELTSVRSKNETLDSEL 187 (270)
Q Consensus 166 ipel~~e~~~L~~~l~~lE~~l 187 (270)
+..++.+..+|+..|.++|.++
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~ 26 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSL 26 (86)
T ss_dssp -------CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554433
No 116
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=63.67 E-value=34 Score=25.63 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5601 93 QLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 93 qL~~l~een~rL~~~i~Ele 112 (270)
+|..++..++.|...|.+++
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E 32 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELE 32 (95)
T ss_dssp -----CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 117
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=63.51 E-value=40 Score=24.51 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=20.1
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE 160 (270)
.....+..=|..++.+-..++..|..|+...++|+
T Consensus 39 ~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 39 KGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555666666666666666666655444
No 118
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=63.41 E-value=11 Score=35.69 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601 145 RDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 200 (270)
Q Consensus 145 ~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e 200 (270)
+..+...+.++|..+...+.....+..+...|..+|..++..+..++.++..+...
T Consensus 49 l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 2dq3_A 49 LRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLW 104 (425)
T ss_dssp HHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444433334556777888888888888888888888888777665
No 119
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=62.84 E-value=41 Score=24.35 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e 248 (270)
+...|..++.+|..++......-.+...|.+
T Consensus 31 ~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544444444433
No 120
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=62.63 E-value=51 Score=31.77 Aligned_cols=72 Identities=8% Similarity=0.066 Sum_probs=42.5
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q psy5601 76 LTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVK 150 (270)
Q Consensus 76 l~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie 150 (270)
+...+.+....-.....+++.++.+...+...|..+...+... .++..+...++..+..++.++..++.++.
T Consensus 31 ~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~---~~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 31 LVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDA---KDLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777888888899999999999888776533222 22223334444444444444444444443
No 121
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=60.44 E-value=22 Score=22.86 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=23.5
Q ss_pred HHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 124 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 124 le~e~~~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
|+....++...+.+|+..+..++.|...||+-+
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 345555556677788888888888888887654
No 122
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=60.16 E-value=52 Score=31.22 Aligned_cols=75 Identities=9% Similarity=0.077 Sum_probs=46.3
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH
Q psy5601 77 TSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN 154 (270)
Q Consensus 77 ~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~ 154 (270)
...+.+....-.....+++.++.+...+...|..+...+.. ..++..+...++..+..++.++..++.++..+-.
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEP---VDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777888888999999999999999876554322 2233344444555555555555555555444333
No 123
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=60.07 E-value=43 Score=23.77 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy5601 136 ETLDSELKCRDEEVKKLTNAKHAVEDK 162 (270)
Q Consensus 136 eele~eL~~~e~Eie~L~~qi~~LE~~ 162 (270)
.+|-..+..++.||.+|..=|..+.+.
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~K 32 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSK 32 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888998888888666654
No 124
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=59.89 E-value=52 Score=24.58 Aligned_cols=31 Identities=6% Similarity=0.029 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e 248 (270)
+...|..++.+|..++......-.+-..|..
T Consensus 42 ~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 72 (95)
T 3mov_A 42 SRRMLTDKEREMAEIRDQMQQQLNDYEQLLD 72 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544444443333
No 125
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.22 E-value=1.1e+02 Score=28.31 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 200 AKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQ 236 (270)
Q Consensus 200 e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~ 236 (270)
+++.+.++...+...+.++...|.+....+.++-.+.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 443 KETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 3333334444444444444444444444444444443
No 126
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=58.08 E-value=28 Score=32.69 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601 164 KAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA 200 (270)
Q Consensus 164 ~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e 200 (270)
..+..+..+...|..+|..++..+..++.++..+...
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777788888888888888888888777766554
No 127
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=57.56 E-value=24 Score=26.91 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 135 NETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 135 ~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
+..+...|..++.|..+|+.++..||.
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 128
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=57.39 E-value=36 Score=23.04 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601 202 HAVEDKCKLLSQENAELQAAISLVQAQLDTL 232 (270)
Q Consensus 202 e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~ 232 (270)
..+..++..+...|..|...|..|..++..+
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 129
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.23 E-value=23 Score=23.74 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 85 ANVEEWKKQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 85 a~v~~wk~qL~~l~een~rL~~~i~Ele 112 (270)
+.|+.++.+++.++..+..|..++.++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 130
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=57.13 E-value=22 Score=27.11 Aligned_cols=45 Identities=29% Similarity=0.353 Sum_probs=28.0
Q ss_pred HHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 63 EIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTK 107 (270)
Q Consensus 63 E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~ 107 (270)
|..+..+..+|.||...-..+.+.|..+..++..++.+|.+|...
T Consensus 43 E~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 43 EKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666655556666677777777777777666554
No 131
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=55.05 E-value=70 Score=24.59 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601 135 NETLDSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 135 ~eele~eL~~~e~Eie~L~~qi~~LE 160 (270)
++++...+..++.++..|..++..|.
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~ 28 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVR 28 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666554444
No 132
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=53.46 E-value=21 Score=24.34 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=15.2
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 130 SVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 130 ~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
+|...|..|+-+-..++.||.+|++-+
T Consensus 22 ~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 22 QLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455777887777654
No 133
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=52.58 E-value=99 Score=29.76 Aligned_cols=37 Identities=11% Similarity=0.229 Sum_probs=27.8
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 77 TSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEA 113 (270)
Q Consensus 77 ~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~ 113 (270)
...+.+....-.....+++.++.+...+.+.|..+..
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~ 105 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVV 105 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566667777788888888888888888887654
No 134
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=52.21 E-value=1.1e+02 Score=26.21 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=9.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 211 LSQENAELQAAISLVQAQLDTLLA 234 (270)
Q Consensus 211 ~~~r~~~lE~~i~~LE~~Lee~~~ 234 (270)
.++++..+..+|..+..++.....
T Consensus 117 ~e~~i~~l~~~v~~ld~~vt~~et 140 (242)
T 3c9i_A 117 AEGEIASLQTNVSALDGRVTTAEN 140 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhccccccccc
Confidence 333333333333344333333333
No 135
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=52.09 E-value=90 Score=25.01 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5601 223 SLVQAQLDTLLASQDAQRR 241 (270)
Q Consensus 223 ~~LE~~Lee~~~~~~~~~~ 241 (270)
.+|+..|-+.-.-++.+..
T Consensus 101 rELEADLKEKDsMVe~LT~ 119 (167)
T 4gkw_A 101 GELEADLKEKDSMVESLTE 119 (167)
T ss_dssp HHHHHTHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhHHHHHHHH
Confidence 3444444444443333333
No 136
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=52.02 E-value=69 Score=24.34 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 87 VEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 87 v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
--.++..+..+.++|.+|+..-...- .+|.+|+.++..+..|...|..+-
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~--------------------~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLD--------------------ARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccch--------------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777778888777633322 466667777777777776666544
No 137
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=51.87 E-value=52 Score=22.55 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e 248 (270)
++.++..|+.+-..++.....++.|+..|++
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 138
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=50.88 E-value=46 Score=28.37 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHH
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDS 185 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~ 185 (270)
++..++..+..+..||..-+.+|.-||- --||.+.+-+..+...|++.|.
T Consensus 152 elA~le~~~~~L~~eIkkT~RRVNALE~--viIP~~e~tikyI~~~LdE~ER 201 (217)
T 3aon_A 152 KLAEVEKTCQLMAEEIEKTRRRVNALEY--MTIPQLEETIYYIKMKLEENER 201 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhh--hhccchHHHHHHHHHHHhHHHH
Confidence 5667888888899999999999999987 7899999999999998887654
No 139
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=50.17 E-value=54 Score=21.84 Aligned_cols=22 Identities=18% Similarity=-0.013 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5601 216 AELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 216 ~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
..+-.++..|-..|..++....
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~ 40 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLL 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333
No 140
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=49.41 E-value=25 Score=20.86 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=10.4
Q ss_pred HHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601 182 TLDSELKCRDEEVKKLTNAKHAVE 205 (270)
Q Consensus 182 ~lE~~l~~~d~el~~L~~e~e~l~ 205 (270)
+||..+++++.-+..|+..++.+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 141
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=49.40 E-value=37 Score=21.01 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=7.8
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q psy5601 207 KCKLLSQENAELQAAISLVQ 226 (270)
Q Consensus 207 ~~e~~~~r~~~lE~~i~~LE 226 (270)
+++.+-.++.+|+..|..|.
T Consensus 9 KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 33333334444444443333
No 142
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=49.10 E-value=51 Score=21.30 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q psy5601 101 NQKLKTKYIELE 112 (270)
Q Consensus 101 n~rL~~~i~Ele 112 (270)
|+-|+.+|..+.
T Consensus 5 naylrkkiarlk 16 (52)
T 3he5_B 5 NAYLRKKIARLK 16 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 344444444443
No 143
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=48.18 E-value=76 Score=22.98 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5601 93 QLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 93 qL~~l~een~rL~~~i~Ele 112 (270)
+|..|+.....|..=|.+.+
T Consensus 3 ~L~~f~~~l~el~~WL~e~e 22 (118)
T 3uul_A 3 DLDSYQIALEEVLTWLLSAE 22 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665554
No 144
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=47.59 E-value=69 Score=30.82 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhH------Hh----------hh-hhhhhHHH----HHH-HHHHHH
Q psy5601 121 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKH------AV----------ED-KCKAAVEL----RKE-LTSVRS 178 (270)
Q Consensus 121 ~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~------~L----------E~-~~~eipel----~~e-~~~L~~ 178 (270)
+-++..++.++...++.|.++......+|-.+.+.-+ .+ .. .+..+..| ..+ ...|..
T Consensus 39 ~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 118 (484)
T 3lss_A 39 IIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSD 118 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHHH
Confidence 3444455566666666666666666666655443100 00 00 01223344 555 666667
Q ss_pred hhHHHHHHhhhhHHHHHHHHHh
Q psy5601 179 KNETLDSELKCRDEEVKKLTNA 200 (270)
Q Consensus 179 ~l~~lE~~l~~~d~el~~L~~e 200 (270)
+|..++..+..++.++..+...
T Consensus 119 ~i~~le~~~~~~~~~~~~~l~~ 140 (484)
T 3lss_A 119 QVAGLAKEAQQLEEERDKLMLN 140 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777766666666665544
No 145
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=47.54 E-value=1.8e+02 Score=27.22 Aligned_cols=25 Identities=8% Similarity=0.242 Sum_probs=10.7
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHH
Q psy5601 174 TSVRSKNETLDSELKCRDEEVKKLT 198 (270)
Q Consensus 174 ~~L~~~l~~lE~~l~~~d~el~~L~ 198 (270)
..+.+++.++|..+...+..|..|+
T Consensus 87 kkml~~~~~~e~~~~~~~~~i~~l~ 111 (409)
T 1m1j_C 87 KKIIEEIIRYENTILAHENTIQQLT 111 (409)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3444444444444444444443333
No 146
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=47.41 E-value=43 Score=30.57 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=6.7
Q ss_pred hHHHHHHhhhhHHHHHHH
Q psy5601 180 NETLDSELKCRDEEVKKL 197 (270)
Q Consensus 180 l~~lE~~l~~~d~el~~L 197 (270)
|..+|..+...+..|..|
T Consensus 14 ~~~~e~~i~~~~~~i~~L 31 (323)
T 1lwu_C 14 VRILEQIGVSHDAQIQEL 31 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHH
Confidence 333333333333333333
No 147
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=47.35 E-value=18 Score=23.39 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhHHHHHHhhhh
Q psy5601 170 RKELTSVRSKNETLDSELKCR 190 (270)
Q Consensus 170 ~~e~~~L~~~l~~lE~~l~~~ 190 (270)
.++-+.|+.+|..||.+++++
T Consensus 15 ~~r~e~LE~Ri~~LE~KLd~L 35 (43)
T 2pnv_A 15 NERSEDFEKRIVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333
No 148
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=47.22 E-value=61 Score=21.65 Aligned_cols=30 Identities=7% Similarity=0.034 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 222 ISLVQAQLDTLLASQDAQRRIIDTLNHQLA 251 (270)
Q Consensus 222 i~~LE~~Lee~~~~~~~~~~El~~l~e~ld 251 (270)
|..|..++..++......+.|..+....+|
T Consensus 20 VdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 20 ADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333333333344444444444443
No 149
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=46.98 E-value=52 Score=21.11 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=11.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601 205 EDKCKLLSQENAELQAAISLVQAQLDTL 232 (270)
Q Consensus 205 ~~~~e~~~~r~~~lE~~i~~LE~~Lee~ 232 (270)
-++++.+..+++-.+.+|..++..+.++
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 150
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=46.66 E-value=58 Score=21.25 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL 257 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL 257 (270)
+|.+|..|+..|+-++.+...+-.|...-...+-..|..|
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666665555555555555554444443
No 151
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=46.00 E-value=23 Score=20.68 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601 136 ETLDSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 136 eele~eL~~~e~Eie~L~~qi~~LE 160 (270)
++|-+-+..++.|...|+..+++|=
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666665543
No 152
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=45.35 E-value=45 Score=21.45 Aligned_cols=23 Identities=17% Similarity=0.481 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 212 SQENAELQAAISLVQAQLDTLLA 234 (270)
Q Consensus 212 ~~r~~~lE~~i~~LE~~Lee~~~ 234 (270)
..+..++|.||..|+.+|+.+..
T Consensus 15 ~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 15 NERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554444443
No 153
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=44.74 E-value=88 Score=22.77 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=23.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5601 209 KLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGR 253 (270)
Q Consensus 209 e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~k 253 (270)
-.+.+.+..+...|..|.+.++........+....+.+-..+|..
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555554444443
No 154
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=44.24 E-value=1.3e+02 Score=28.83 Aligned_cols=38 Identities=11% Similarity=-0.061 Sum_probs=29.1
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 76 LTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEA 113 (270)
Q Consensus 76 l~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~ 113 (270)
+...+.+....-.....+++.++.+...+.+.|..+..
T Consensus 35 ~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 35 IVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666777778888888899988888888877654
No 155
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=43.94 E-value=41 Score=28.87 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=45.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHH
Q psy5601 131 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDS 185 (270)
Q Consensus 131 l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~ 185 (270)
+--++..++..+..+..||..-+.+|.-||- --||.+.+-+..+...|++.|.
T Consensus 136 ~lvelA~le~~~~~L~~eIkkT~RRVNALE~--viIP~le~tikyI~~~LdE~ER 188 (223)
T 3a5c_G 136 ALIRVANTETRLKKIGEEIKKTTRRVNALEQ--VVIPGIRAQIRFIQQVLEQRER 188 (223)
T ss_dssp HHHTHHHHHHHHHHHTHHHHHHTHHHHHHHH--HHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh--hhccchHHHHHHHHHHHhHHHH
Confidence 3457788999999999999999999999987 7899999999988888887654
No 156
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=43.78 E-value=1.5e+02 Score=25.18 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=33.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHH
Q psy5601 204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRII-DTLNHQLAGRVAELATIHREI 264 (270)
Q Consensus 204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El-~~l~e~ld~ki~eL~el~~~l 264 (270)
+..++..+..++..++..+..+..++++.-..-.+.+..| ..|.-.|..|..-|.++++.|
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3334444444444455555555555555555555444443 456666777777777766444
No 157
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=43.66 E-value=42 Score=20.38 Aligned_cols=24 Identities=4% Similarity=0.141 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 226 QAQLDTLLASQDAQRRIIDTLNHQ 249 (270)
Q Consensus 226 E~~Lee~~~~~~~~~~El~~l~e~ 249 (270)
|..++++-..-.+++.|+..|++.
T Consensus 6 EdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333344444444444444444443
No 158
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.14 E-value=2.1e+02 Score=26.69 Aligned_cols=15 Identities=13% Similarity=0.288 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhHHhh
Q psy5601 146 DEEVKKLTNAKHAVE 160 (270)
Q Consensus 146 e~Eie~L~~qi~~LE 160 (270)
...|+.|+..+..+.
T Consensus 66 ~~rIe~L~~~L~~~s 80 (390)
T 1deq_A 66 TSRINKLRDSLFNYQ 80 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 159
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.74 E-value=64 Score=20.60 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5601 87 VEEWKKQLQAYKEENQKLKTK 107 (270)
Q Consensus 87 v~~wk~qL~~l~een~rL~~~ 107 (270)
|.+++.++..+..+|+.|+.+
T Consensus 5 vaqlenevaslenenetlkkk 25 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHh
Confidence 556666666666666666554
No 160
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=42.68 E-value=44 Score=20.40 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 225 VQAQLDTLLASQDAQRRIIDTLNHQ 249 (270)
Q Consensus 225 LE~~Lee~~~~~~~~~~El~~l~e~ 249 (270)
|+..++++-..-.+++.|+..|++.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 161
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=42.30 E-value=31 Score=24.35 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=21.4
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
..|.+|+..|..++.+|..|+.++...-+
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888887755443
No 162
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=41.82 E-value=48 Score=19.31 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=8.4
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q psy5601 205 EDKCKLLSQENAELQAAISL 224 (270)
Q Consensus 205 ~~~~e~~~~r~~~lE~~i~~ 224 (270)
..+|-.++++.+.++.+++.
T Consensus 7 ekkcaalesklqalekklea 26 (31)
T 3ljm_A 7 EKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 163
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=41.79 E-value=61 Score=20.05 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=10.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q psy5601 206 DKCKLLSQENAELQAAISLVQAQL 229 (270)
Q Consensus 206 ~~~e~~~~r~~~lE~~i~~LE~~L 229 (270)
++++.+..++.+|+..|..|+.-|
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344444444444444444444433
No 164
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=40.49 E-value=1.2e+02 Score=28.44 Aligned_cols=8 Identities=0% Similarity=0.302 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q psy5601 193 EVKKLTNA 200 (270)
Q Consensus 193 el~~L~~e 200 (270)
++..|+.+
T Consensus 43 ~~~~l~~~ 50 (421)
T 1ses_A 43 RLQEVQTE 50 (421)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 165
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=40.46 E-value=1e+02 Score=22.27 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5601 227 AQLDTLLASQDAQRRIIDTLNHQLAGRVAELATI 260 (270)
Q Consensus 227 ~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el 260 (270)
.+++++-.+.+-+..|+..+...+.+.-..+.++
T Consensus 37 ~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 37 AKVDELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444433333333333
No 166
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=40.42 E-value=37 Score=20.78 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 225 VQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 225 LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
||..++++-.+-.+++.|+..|++.+
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444444444455555555555443
No 167
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=40.28 E-value=1.9e+02 Score=25.29 Aligned_cols=17 Identities=18% Similarity=0.177 Sum_probs=6.9
Q ss_pred ccchhhhhHHHHHHHHHhh
Q psy5601 11 GQWSDIRANTVSLVQAQLD 29 (270)
Q Consensus 11 gqwad~~an~~~~~~~~l~ 29 (270)
|+++|+| |-|-+=.+|+
T Consensus 18 ~~~~D~k--TtFkVLSyLS 34 (242)
T 3uux_B 18 GSHMDNK--TCFRMLTYIS 34 (242)
T ss_dssp ----CHH--HHHHHHTCCC
T ss_pred CCccCcc--chhhhHHhcC
Confidence 6677776 4555544443
No 168
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=40.24 E-value=1.4e+02 Score=23.69 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5601 217 ELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATI 260 (270)
Q Consensus 217 ~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el 260 (270)
-++-++.+++..|.-=+..-.+-+..|..|...-..+..++.+.
T Consensus 59 ~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~ 102 (130)
T 3cl3_D 59 QLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNH 102 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666555545544555566666766666666666653
No 169
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=40.02 E-value=35 Score=20.77 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 225 VQAQLDTLLASQDAQRRIIDTLNHQ 249 (270)
Q Consensus 225 LE~~Lee~~~~~~~~~~El~~l~e~ 249 (270)
||..++++-.+-..++.|+..|++.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444444444444455544443
No 170
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=39.90 E-value=37 Score=23.04 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=11.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5601 203 AVEDKCKLLSQENAELQAAISLVQAQL 229 (270)
Q Consensus 203 ~l~~~~e~~~~r~~~lE~~i~~LE~~L 229 (270)
+|..++..+...|..|...|..|..++
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 171
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=39.45 E-value=2.7e+02 Score=26.89 Aligned_cols=30 Identities=10% Similarity=0.217 Sum_probs=13.2
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 79 ALQESTANVEEWKKQLQAYKEENQKLKTKY 108 (270)
Q Consensus 79 al~Es~a~v~~wk~qL~~l~een~rL~~~i 108 (270)
|+.++..-++....-|.+.+.-..+...++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (602)
T 1cii_A 227 AISEARNKLSSVTESLNTARNALTRAEQQL 256 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 172
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.44 E-value=2.4e+02 Score=26.30 Aligned_cols=17 Identities=12% Similarity=0.177 Sum_probs=9.4
Q ss_pred HhhhhhcchhhhhhhHH
Q psy5601 66 LANLKSNNLRLTSALQE 82 (270)
Q Consensus 66 l~~Lk~~n~rl~~al~E 82 (270)
+-.|-.+-.||...|-+
T Consensus 44 wG~kCPsGCrLqg~Ldk 60 (390)
T 1deq_A 44 WNTKCPSGCRMKGLIDE 60 (390)
T ss_pred ccCCCCccchHHHHHHH
Confidence 34455555666666643
No 173
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=39.30 E-value=45 Score=20.65 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 224 LVQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 224 ~LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
-|+..++++-....+++.++.+|++.+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344445555555555555555555544
No 174
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=38.74 E-value=50 Score=31.00 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=43.4
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 77 TSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 77 ~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
...+.+....-.....+++.++.+...+.+.|..+...+. +...+..++..+..+|..++.++..+..++
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGK----------DTTEIQNRVKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCS----------CTTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777788888888888888888876543221 123344455555555555555555555554
Q ss_pred HH
Q psy5601 157 HA 158 (270)
Q Consensus 157 ~~ 158 (270)
..
T Consensus 99 ~~ 100 (425)
T 2dq3_A 99 KN 100 (425)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 175
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=37.95 E-value=71 Score=19.74 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 223 SLVQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 223 ~~LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
.-|+..++++.....+++.++.+|++.+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3444555555555555555555555544
No 176
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=37.71 E-value=1.2e+02 Score=22.59 Aligned_cols=54 Identities=7% Similarity=0.126 Sum_probs=27.1
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLAS 235 (270)
Q Consensus 176 L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~ 235 (270)
-+..|..++..++..+.=|..+..++-.++. +-...+..+|+..+.+|..++..
T Consensus 36 rk~~i~~ie~~l~EA~ell~qMelE~r~~p~------~~R~~~~~klr~Yk~dL~~lk~e 89 (102)
T 1vcs_A 36 KKQMVANVEKQLEEARELLEQMDLEVREIPP------QSRGMYSNRMRSYKQEMGKLETD 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT------TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666555555555433321 11234555555555555554443
No 177
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=37.66 E-value=1.1e+02 Score=21.73 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=27.9
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHH
Q psy5601 156 KHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKC 208 (270)
Q Consensus 156 i~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~ 208 (270)
|..|...+..+..|..+...|...|.+++....--+ .|..|+.+.=.+.++|
T Consensus 9 I~~Lk~~d~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI 60 (76)
T 1zhc_A 9 ISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEI 60 (76)
T ss_dssp HHHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHH
Confidence 334444445555666666666666666665544333 6666666543344433
No 178
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.32 E-value=1.2e+02 Score=22.14 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=9.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q psy5601 207 KCKLLSQENAELQAAISLVQAQLDT 231 (270)
Q Consensus 207 ~~e~~~~r~~~lE~~i~~LE~~Lee 231 (270)
++.+++.+|.++...++.++.++++
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 179
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=37.12 E-value=1e+02 Score=21.26 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=5.4
Q ss_pred hhhhHHhhHHHHH
Q psy5601 77 TSALQESTANVEE 89 (270)
Q Consensus 77 ~~al~Es~a~v~~ 89 (270)
+.||.-|.+.|-+
T Consensus 19 K~ALaaSeAkiQQ 31 (63)
T 2w6a_A 19 KKALATSEAKVQQ 31 (63)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHH
Confidence 3444444444333
No 180
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=37.09 E-value=47 Score=20.31 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 225 VQAQLDTLLASQDAQRRIIDTLNHQL 250 (270)
Q Consensus 225 LE~~Lee~~~~~~~~~~El~~l~e~l 250 (270)
|+..++++-..-.++..|+..|++.+
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 44444444444445555555554433
No 181
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=36.99 E-value=2.7e+02 Score=26.15 Aligned_cols=24 Identities=8% Similarity=0.205 Sum_probs=10.3
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHH
Q psy5601 176 VRSKNETLDSELKCRDEEVKKLTN 199 (270)
Q Consensus 176 L~~~l~~lE~~l~~~d~el~~L~~ 199 (270)
+-+++.+++.-+...+..|..|+.
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~ 112 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQE 112 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334444444444444444444433
No 182
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=36.56 E-value=1.3e+02 Score=22.38 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=25.0
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 177 RSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLA 234 (270)
Q Consensus 177 ~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~ 234 (270)
+..|..++..++..+.=|..+..++-.+.. +-...+..+|+..+.+|..++.
T Consensus 48 k~~i~~ie~~ldEA~eLl~qMelE~r~~p~------s~R~~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 48 KKLVRDFDEKQQEANETLAEMEEELRYAPL------TFRNPMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555433321 1123355555555555554443
No 183
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=36.50 E-value=1.1e+02 Score=21.72 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=19.1
Q ss_pred HHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 127 ELTSVRSKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 127 e~~~l~~~~eele~eL~~~e~Eie~L~~qi 156 (270)
...-+...+.-|..+|..++.||.+|+..+
T Consensus 12 ~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i 41 (75)
T 3a7o_A 12 HDDALLNTLAILQKELKSKEQEIRRLKEVI 41 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566667777777777776666655
No 184
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=36.41 E-value=49 Score=22.48 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy5601 91 KKQLQAYKEENQKLKTKYIELEATKGV 117 (270)
Q Consensus 91 k~qL~~l~een~rL~~~i~Ele~~~~~ 117 (270)
+.++..++.-|.+|..+|+.++.+|..
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e 36 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSE 36 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999876653
No 185
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=35.56 E-value=1.2e+02 Score=21.54 Aligned_cols=39 Identities=8% Similarity=0.115 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601 222 ISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI 264 (270)
Q Consensus 222 i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l 264 (270)
+.+|...|.+.+.+.. +|..+.+.+-+|+..++++.+.|
T Consensus 5 NKeL~~kl~~Kq~EI~----rLnvlvgslR~KLiKYtelnKKL 43 (74)
T 2q6q_A 5 NKELNFKLREKQNEIF----ELKKIAETLRSKLEKYVDITKKL 43 (74)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444 44444444455555555554444
No 186
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=35.18 E-value=1.2e+02 Score=21.69 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 221 AISLVQAQLDTLLASQDAQRRII 243 (270)
Q Consensus 221 ~i~~LE~~Lee~~~~~~~~~~El 243 (270)
+|..|+..|+-++.+...+-.+.
T Consensus 8 Kv~~LE~sld~LQTrfARLLaEy 30 (74)
T 3swf_A 8 KVTRMESSVDLLQTRFARILAEY 30 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 187
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=35.09 E-value=78 Score=19.34 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 224 LVQAQLDTLLASQDAQRRIIDTLNHQLA 251 (270)
Q Consensus 224 ~LE~~Lee~~~~~~~~~~El~~l~e~ld 251 (270)
-|+..++++-....++..|+..|++.+.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3444444444444555555555555443
No 188
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=34.43 E-value=63 Score=19.61 Aligned_cols=20 Identities=5% Similarity=-0.056 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5601 229 LDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 229 Lee~~~~~~~~~~El~~l~e 248 (270)
++++-..-.++..|+..|++
T Consensus 9 VEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 9 IEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 33333333333344444433
No 189
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=34.01 E-value=2.4e+02 Score=24.64 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5601 168 ELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQL 229 (270)
Q Consensus 168 el~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~L 229 (270)
.|+.+.+.+..+++-|+=+=.-...||.++-..++.|.....-+-.|++.+|..=-.|+..|
T Consensus 153 ~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL 214 (242)
T 3uux_B 153 ALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNL 214 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35666666655555554443333444444444444444444334444333333333333333
No 190
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.24 E-value=63 Score=20.72 Aligned_cols=29 Identities=17% Similarity=0.447 Sum_probs=16.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
+.|+.+.++|..-+..|..|+++..+|+.
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555665555566666666655553
No 191
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=33.22 E-value=73 Score=19.45 Aligned_cols=25 Identities=8% Similarity=0.157 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 225 VQAQLDTLLASQDAQRRIIDTLNHQ 249 (270)
Q Consensus 225 LE~~Lee~~~~~~~~~~El~~l~e~ 249 (270)
|+..++++-.+-.++..++..|++.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333334444444444444444443
No 192
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=33.19 E-value=84 Score=19.17 Aligned_cols=13 Identities=8% Similarity=0.118 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy5601 235 SQDAQRRIIDTLN 247 (270)
Q Consensus 235 ~~~~~~~El~~l~ 247 (270)
.-..++.++..|+
T Consensus 16 ~n~~Le~eV~rLk 28 (34)
T 2oxj_A 16 KNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHH
Confidence 3333333333333
No 193
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=33.17 E-value=3.4e+02 Score=26.16 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 88 EEWKKQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 88 ~~wk~qL~~l~een~rL~~~i~Ele 112 (270)
..+...|++|+.+++|.+.+-+.+.
T Consensus 5 a~yq~~la~yq~elarvqkana~ak 29 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANADAK 29 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666555543
No 194
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.93 E-value=1.1e+02 Score=20.47 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNH 248 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e 248 (270)
++.++..|+.+-..+...+..+..++..|..
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 195
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=32.29 E-value=1.6e+02 Score=22.23 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=8.9
Q ss_pred HHHHHhhHHHHHHhhhhHHHH
Q psy5601 174 TSVRSKNETLDSELKCRDEEV 194 (270)
Q Consensus 174 ~~L~~~l~~lE~~l~~~d~el 194 (270)
-.|..++.++.+.+...|..+
T Consensus 16 ~~~~~~~~ri~~aig~~d~ri 36 (114)
T 2xzr_A 16 YHIENEIARIKKLIGAIDGRV 36 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHhhhhHHH
Confidence 334444444444444444443
No 196
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=32.28 E-value=1.4e+02 Score=22.78 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=28.6
Q ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 197 LTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDA 238 (270)
Q Consensus 197 L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~ 238 (270)
|+.-|.++++.|..++..+=+++.++..-.-+|.++..++..
T Consensus 47 L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQ 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Confidence 444566677777777777777777777777777777666653
No 197
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.06 E-value=3.4e+02 Score=25.86 Aligned_cols=29 Identities=10% Similarity=0.019 Sum_probs=12.3
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHhhHH
Q psy5601 175 SVRSKNETLDSELKCRDEEVKKLTNAKHA 203 (270)
Q Consensus 175 ~L~~~l~~lE~~l~~~d~el~~L~~e~e~ 203 (270)
.|...+...+..+.+....|++....++.
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~ 153 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEMEL 153 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 34444444444444444444444433333
No 198
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=31.81 E-value=2.1e+02 Score=23.26 Aligned_cols=28 Identities=11% Similarity=0.386 Sum_probs=14.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 81 QESTANVEEWKKQLQAYKEENQKLKTKY 108 (270)
Q Consensus 81 ~Es~a~v~~wk~qL~~l~een~rL~~~i 108 (270)
.+...++.-|...+.+-+.--++|....
T Consensus 23 ~qL~nrla~~~am~~sqqq~~eqlS~eF 50 (158)
T 3tul_A 23 SQLESRLAVWQAMIESQKEMGIQVSKEF 50 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--CCTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666665555544444433
No 199
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=31.71 E-value=65 Score=25.26 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhh--hhhhHHHHHHHHHHHHhhHHH
Q psy5601 138 LDSELKCRDEEVKKLTNAKHAVEDK--CKAAVELRKELTSVRSKNETL 183 (270)
Q Consensus 138 le~eL~~~e~Eie~L~~qi~~LE~~--~~eipel~~e~~~L~~~l~~l 183 (270)
++.+|..+..-++.++.+...+... ..-|.+++.+++.|..+|.++
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~l 55 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARL 55 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555544 334556666666666666554
No 200
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=31.10 E-value=1.6e+02 Score=21.67 Aligned_cols=25 Identities=0% Similarity=-0.024 Sum_probs=11.7
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHhh
Q psy5601 177 RSKNETLDSELKCRDEEVKKLTNAK 201 (270)
Q Consensus 177 ~~~l~~lE~~l~~~d~el~~L~~e~ 201 (270)
+..|..++..+...+.=|..+..++
T Consensus 33 k~~i~~ie~~ldEA~ell~qMelE~ 57 (97)
T 3onj_A 33 NTTLKHVEQQQDELFDLLDQMDVEV 57 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555444444444443
No 201
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=31.09 E-value=1.3e+02 Score=22.99 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=32.4
Q ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 196 KLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQ 239 (270)
Q Consensus 196 ~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~ 239 (270)
+|+.-|.++++.|..++...=+++.++..-.-+|.++..++..+
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 35555777777777788888888888877777777777776644
No 202
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=30.78 E-value=2.4e+02 Score=23.71 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=9.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q psy5601 206 DKCKLLSQENAELQAAISLVQAQL 229 (270)
Q Consensus 206 ~~~e~~~~r~~~lE~~i~~LE~~L 229 (270)
.+++.+..++++++.++......+
T Consensus 41 ~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 41 TEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHH
Confidence 333333333344444443333333
No 203
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=30.11 E-value=2e+02 Score=22.55 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=12.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHAV 159 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~L 159 (270)
.+.++...+..++.++..|..++..|
T Consensus 10 ~l~ql~~~~qql~~~~~~l~~~~~~L 35 (151)
T 2zdi_C 10 ELEKLAYEYQVLQAQAQILAQNLELL 35 (151)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 204
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=30.05 E-value=77 Score=19.39 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=7.3
Q ss_pred HHHHHhHHHHHHHHHHHH
Q psy5601 207 KCKLLSQENAELQAAISL 224 (270)
Q Consensus 207 ~~e~~~~r~~~lE~~i~~ 224 (270)
.|+++...|.-|+.+|+.
T Consensus 15 DIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 15 DIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 333333344444444443
No 205
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.87 E-value=98 Score=21.75 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601 219 QAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA 251 (270)
Q Consensus 219 E~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld 251 (270)
..+|..|+..|........+++..|..+...+.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555666666666666655556666555544
No 206
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=29.09 E-value=65 Score=18.19 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=11.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHH
Q psy5601 131 VRSKNETLDSELKCRDEEVKKL 152 (270)
Q Consensus 131 l~~~~eele~eL~~~e~Eie~L 152 (270)
++.++-+|+.++.++..|+..|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 3345555565555555555443
No 207
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=28.60 E-value=15 Score=28.31 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhH
Q psy5601 85 ANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKH 157 (270)
Q Consensus 85 a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~ 157 (270)
..+..++..--+++....--..+...+. .+.+|+.++..|...++.|..+...+..|++.++.+.+
T Consensus 31 ~e~~~lK~~RR~lKNR~yAq~CR~rk~~-------~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e 96 (107)
T 3a5t_A 31 EEIIQLKQRRRTLKNRGYAASCRVKRVT-------QKEELEKQKAELQQEVEKLASENASMKLELDALRSKYE 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC-
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444444433333 45566666777777777666666666666555555443
No 208
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.48 E-value=1.7e+02 Score=21.16 Aligned_cols=17 Identities=12% Similarity=0.261 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhHHhh
Q psy5601 144 CRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 144 ~~e~Eie~L~~qi~~LE 160 (270)
.+..|++.|+.--.+|.
T Consensus 22 q~qaEl~sLrrT~~EL~ 38 (78)
T 3iv1_A 22 RAQAELNALKRTEEDLK 38 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 35555555555443333
No 209
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=28.47 E-value=1.3e+02 Score=19.85 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy5601 217 ELQAAISLVQAQLD 230 (270)
Q Consensus 217 ~lE~~i~~LE~~Le 230 (270)
.++..|..|+.+|.
T Consensus 16 KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 16 RLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 210
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=28.43 E-value=85 Score=19.43 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy5601 136 ETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 136 eele~eL~~~e~Eie~L~~qi 156 (270)
++|...|..++++|.+|+.+-
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN 30 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKEN 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 345555555666666655544
No 211
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.40 E-value=2e+02 Score=26.72 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy5601 212 SQENAELQAAISLVQAQLDTLL 233 (270)
Q Consensus 212 ~~r~~~lE~~i~~LE~~Lee~~ 233 (270)
..++.+++..++.+..++..+.
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 16 RQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 212
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=28.09 E-value=2.7e+02 Score=23.51 Aligned_cols=8 Identities=13% Similarity=0.268 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q psy5601 219 QAAISLVQ 226 (270)
Q Consensus 219 E~~i~~LE 226 (270)
..+|++++
T Consensus 188 K~KIR~lq 195 (213)
T 1ik9_A 188 KTKIRSLH 195 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555555
No 213
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=27.88 E-value=1.4e+02 Score=19.93 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 87 VEEWKKQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 87 v~~wk~qL~~l~een~rL~~~i~Ele 112 (270)
-+++=.|.+.++-+|.-|+..+..-.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhH
Confidence 45666677788888888877765543
No 214
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=27.68 E-value=3.3e+02 Score=24.30 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=18.1
Q ss_pred hhhhhchHHHHHHHHHHHHHH-HHHHHhhHHhhh
Q psy5601 129 TSVRSKNETLDSELKCRDEEV-KKLTNAKHAVED 161 (270)
Q Consensus 129 ~~l~~~~eele~eL~~~e~Ei-e~L~~qi~~LE~ 161 (270)
..+...|+++...|.-|-.|+ .+++..+++|..
T Consensus 132 ~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~ 165 (307)
T 2l7b_A 132 AMLGQSTEELRVRLASHLRKLRKRLLRDADDLQK 165 (307)
T ss_dssp HHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344456777777777666555 233444444443
No 215
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=27.59 E-value=2e+02 Score=21.75 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHhh
Q psy5601 144 CRDEEVKKLTNAK 156 (270)
Q Consensus 144 ~~e~Eie~L~~qi 156 (270)
.....+..|..++
T Consensus 26 e~e~~k~eL~~~~ 38 (107)
T 2no2_A 26 DLEREKKELEDSL 38 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333344333
No 216
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=27.57 E-value=99 Score=18.21 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601 135 NETLDSELKCRDEEVKKLTNAKHAVED 161 (270)
Q Consensus 135 ~eele~eL~~~e~Eie~L~~qi~~LE~ 161 (270)
+.+|+.++...+.|.=.|...+..|+-
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444544444455455555544443
No 217
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=27.08 E-value=2.4e+02 Score=22.60 Aligned_cols=17 Identities=12% Similarity=0.460 Sum_probs=6.9
Q ss_pred HhHHHHHHHHHHHHHHH
Q psy5601 250 LAGRVAELATIHREINT 266 (270)
Q Consensus 250 ld~ki~eL~el~~~l~~ 266 (270)
--.+...+..++++|-.
T Consensus 126 yK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 126 YKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 218
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=27.02 E-value=2.4e+02 Score=22.52 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=18.1
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAKHA 158 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi~~ 158 (270)
..|+++...-...+.||.+|++...-
T Consensus 46 gKVDQlqKRn~~HQKEi~~Lrae~~~ 71 (167)
T 4gkw_A 46 GKVDQLQKRNVAHQKEIGKLRAELGT 71 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccHHHHHHHHHHHHHHH
Confidence 36677777777777777777776643
No 219
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=26.39 E-value=2.1e+02 Score=22.71 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 196 KLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQR 240 (270)
Q Consensus 196 ~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~ 240 (270)
+|+.-|.++++.|..++...=+++.++..-..+|.++..++..+.
T Consensus 62 ~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 62 ELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 355556777777777777777777777777777777777766443
No 220
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=26.00 E-value=99 Score=20.36 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=16.4
Q ss_pred HHHHhhhhhcchhhhhhhHHhhHHHHHHH
Q psy5601 63 EIELANLKSNNLRLTSALQESTANVEEWK 91 (270)
Q Consensus 63 E~el~~Lk~~n~rl~~al~Es~a~v~~wk 91 (270)
|.-+..||..|..|.+-.++....-...+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~e 31 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKE 31 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 34466788888877655444443333333
No 221
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.66 E-value=1.8e+02 Score=26.33 Aligned_cols=19 Identities=11% Similarity=-0.031 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5601 216 AELQAAISLVQAQLDTLLA 234 (270)
Q Consensus 216 ~~lE~~i~~LE~~Lee~~~ 234 (270)
...+..|..|+..|...+.
T Consensus 22 ~~~~~~i~~L~~~l~~~~~ 40 (323)
T 1lwu_C 22 VSHDAQIQELSEMWRVNQQ 40 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333
No 222
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.50 E-value=2.1e+02 Score=21.33 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 226 QAQLDTLLASQDAQRRIIDTLNHQ 249 (270)
Q Consensus 226 E~~Lee~~~~~~~~~~El~~l~e~ 249 (270)
+.+|.+.....+.++.++..+..-
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~ 84 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAW 84 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 223
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=25.20 E-value=64 Score=28.06 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=25.1
Q ss_pred HHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKY 108 (270)
Q Consensus 65 el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i 108 (270)
.+..|+.+|.+|+.-+.+ ...|..++..++.+|.+|+..+
T Consensus 20 ~~~~l~~eN~~Lk~e~~~----l~~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 20 DLKNTYTENQHLKERLEE----LAQLESEVADLKKENKDLKESL 59 (255)
T ss_dssp ------CTTTTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 356788888887755433 4667777888888888888765
No 224
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=24.82 E-value=1.5e+02 Score=19.27 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=13.2
Q ss_pred chHHHHHHHH-HHHHHHHHHHHhh
Q psy5601 134 KNETLDSELK-CRDEEVKKLTNAK 156 (270)
Q Consensus 134 ~~eele~eL~-~~e~Eie~L~~qi 156 (270)
.++.|+.+|- ++..|+..++..|
T Consensus 8 dle~~KqEIL~E~RkElqK~K~EI 31 (45)
T 1use_A 8 DLQRVKQELLEEVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556665553 4556666666655
No 225
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.32 E-value=94 Score=20.67 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=12.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601 134 KNETLDSELKCRDEEVKKLTNAKHA 158 (270)
Q Consensus 134 ~~eele~eL~~~e~Eie~L~~qi~~ 158 (270)
-|++|+..+..++.|...|..++..
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555533
No 226
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=23.75 E-value=3.7e+02 Score=23.48 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=8.3
Q ss_pred hhhhhchHHHHHHHHHH
Q psy5601 129 TSVRSKNETLDSELKCR 145 (270)
Q Consensus 129 ~~l~~~~eele~eL~~~ 145 (270)
..+..++++++..+.-|
T Consensus 106 ~kl~~~veelk~~L~Py 122 (273)
T 3s84_A 106 AKIDQNVEELKGRLTPY 122 (273)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHhHhH
Confidence 33444555555555544
No 227
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.39 E-value=2.2e+02 Score=20.84 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=11.0
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhh
Q psy5601 133 SKNETLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 133 ~~~eele~eL~~~e~Eie~L~~qi 156 (270)
+++..|+.++..++.++..+..++
T Consensus 8 ~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444433
No 228
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.37 E-value=1.4e+02 Score=21.81 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=12.5
Q ss_pred HHhhhhhchHHHHHHHHHHHHHHHHHHH
Q psy5601 127 ELTSVRSKNETLDSELKCRDEEVKKLTN 154 (270)
Q Consensus 127 e~~~l~~~~eele~eL~~~e~Eie~L~~ 154 (270)
++..|-..|+.++.++..+..+++.|+.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 229
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.39 E-value=2.1e+02 Score=20.94 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601 135 NETLDSELKCRDEEVKKLTNAKHAV 159 (270)
Q Consensus 135 ~eele~eL~~~e~Eie~L~~qi~~L 159 (270)
|+.-..+|...+.+|.+.++.|.+|
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444333
No 230
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=22.38 E-value=3e+02 Score=22.00 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhh
Q psy5601 96 AYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVR 132 (270)
Q Consensus 96 ~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~ 132 (270)
....+.+-|+-+|.++++..-.|+...+|+.+...|.
T Consensus 9 e~~~~~d~L~~ql~El~~~~l~~gE~eeLe~e~~rL~ 45 (175)
T 4abx_A 9 ERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLS 45 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence 3456677788888888887777776666666555443
No 231
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.35 E-value=4.8e+02 Score=24.32 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=12.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 207 KCKLLSQENAELQAAISLVQAQLDTLLASQD 237 (270)
Q Consensus 207 ~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~ 237 (270)
+...+..++..++..|...+..+..++....
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~ 115 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHI 115 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3333333444444444444444444433333
No 232
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.25 E-value=1.9e+02 Score=21.16 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=20.2
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 78 SALQESTANVEEWKKQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 78 ~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele 112 (270)
.||.++=....++..++..+++++..|+..+.++.
T Consensus 39 ~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 39 KALYEALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544455666666666666666666555554
No 233
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=22.01 E-value=18 Score=27.39 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHH
Q psy5601 127 ELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELT 174 (270)
Q Consensus 127 e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~ 174 (270)
....|..++..-+..|..++..|+.|+..+.........||.|+.|++
T Consensus 18 ei~~L~~~L~~AEeaL~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~ 65 (96)
T 3fx0_A 18 QLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQAD 65 (96)
T ss_dssp --------CCSSTTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 234
>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}
Probab=21.89 E-value=23 Score=21.94 Aligned_cols=10 Identities=40% Similarity=1.079 Sum_probs=6.7
Q ss_pred cccccchhhh
Q psy5601 8 QKFGQWSDIR 17 (270)
Q Consensus 8 ~~~gqwad~~ 17 (270)
-|||.|-..-
T Consensus 8 PkFG~WD~~n 17 (35)
T 2nud_C 8 PKFGDWDENN 17 (35)
T ss_dssp -CCSGGGTTC
T ss_pred CCCCcccCCC
Confidence 4899997443
No 235
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.53 E-value=1e+02 Score=20.60 Aligned_cols=30 Identities=7% Similarity=0.051 Sum_probs=15.0
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601 131 VRSKNETLDSELKCRDEEVKKLTNAKHAVE 160 (270)
Q Consensus 131 l~~~~eele~eL~~~e~Eie~L~~qi~~LE 160 (270)
|++=++++...+..+..|+..|+.++..|+
T Consensus 25 VD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555655555554443
No 236
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=21.30 E-value=3.2e+02 Score=21.96 Aligned_cols=14 Identities=0% Similarity=-0.130 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy5601 224 LVQAQLDTLLASQD 237 (270)
Q Consensus 224 ~LE~~Lee~~~~~~ 237 (270)
.+.+.|+.++....
T Consensus 70 ~l~rdleasr~akk 83 (146)
T 2xnx_M 70 AITREQEINRNLLG 83 (146)
T ss_dssp THHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 237
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=21.20 E-value=3e+02 Score=21.49 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5601 218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELAT 259 (270)
Q Consensus 218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~e 259 (270)
++..+.-++.+++.+....+.+...+..+.+.+......|..
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~ 137 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQE 137 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433333333
No 238
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=20.75 E-value=2.8e+02 Score=20.96 Aligned_cols=20 Identities=10% Similarity=0.204 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy5601 137 TLDSELKCRDEEVKKLTNAK 156 (270)
Q Consensus 137 ele~eL~~~e~Eie~L~~qi 156 (270)
++=.-|-.+..++.++.+-|
T Consensus 10 ~~~~~~~~~~~~~~ri~~ai 29 (114)
T 2xzr_A 10 EILSKIYHIENEIARIKKLI 29 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHH
Confidence 33333333444444443333
No 239
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.73 E-value=2.5e+02 Score=20.48 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=6.2
Q ss_pred HHHHHhHHHHHHHHHHH
Q psy5601 207 KCKLLSQENAELQAAIS 223 (270)
Q Consensus 207 ~~e~~~~r~~~lE~~i~ 223 (270)
++..++..|..|..+|.
T Consensus 44 r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 44 KVLELTAENERLQKKVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 240
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.65 E-value=1.9e+02 Score=19.08 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601 87 VEEWKKQLQAYKEENQKLKTKYIELE 112 (270)
Q Consensus 87 v~~wk~qL~~l~een~rL~~~i~Ele 112 (270)
+..++.++..|..+|..|...+..+.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555554444443
Done!