RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5601
(270 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 61.0 bits (148), Expect = 8e-11
Identities = 40/228 (17%), Positives = 100/228 (43%), Gaps = 18/228 (7%)
Query: 57 ANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKG 116
A KK + ++ +L+ +A Q+ +++ +++ ++ + +L +
Sbjct: 948 AEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007
Query: 117 VSEAAV-----------ELRKELTSVRSKNETLDSELKCRDEEVKK----LTNAKHAVED 161
+ E V E K LT +++K+E++ SEL+ R ++ +K L K +E
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067
Query: 162 KCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAA 221
+ +L +++ ++++ L ++L ++EE++ + ++ EL++
Sbjct: 1068 ESS---DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124
Query: 222 ISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQ 269
IS +Q L++ A+++ + L+ +L EL T +
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQE 1172
Score = 55.2 bits (133), Expect = 7e-09
Identities = 25/196 (12%), Positives = 67/196 (34%), Gaps = 5/196 (2%)
Query: 60 KKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSE 119
KK E ++ ++ N +LT + V + L +E+ + L + E+ E
Sbjct: 986 KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045
Query: 120 AAVE-LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVE----LRKELT 174
++ K + L+ E E++ +L ++ + E L
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLE 1105
Query: 175 SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLA 234
S+ +++ + + L + + ++ +L + ++ +L+ L
Sbjct: 1106 DETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165
Query: 235 SQDAQRRIIDTLNHQL 250
+ Q+ + +
Sbjct: 1166 TTATQQELRGSDYKDD 1181
Score = 52.1 bits (125), Expect = 8e-08
Identities = 43/210 (20%), Positives = 96/210 (45%), Gaps = 8/210 (3%)
Query: 61 KWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEA 120
+ E E+ R Q++ A ++E +++ EE L+ K L+A +
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK---LQAETELYAE 910
Query: 121 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAV-ELRKELTSVRSK 179
A E+R L + + + E + E++ R EE ++ + A + K + + +L ++L +
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 180 NETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQ 239
+ L E D ++KK+ + +ED+ L++E L+ + + L T LA ++ +
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV----SDLTTNLAEEEEK 1026
Query: 240 RRIIDTLNHQLAGRVAELATIHREINTALQ 269
+ + L ++ ++EL ++ + Q
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056
Score = 47.9 bits (114), Expect = 2e-06
Identities = 29/202 (14%), Positives = 72/202 (35%), Gaps = 12/202 (5%)
Query: 19 NTVSLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLRLTS 78
+ + +++ Q + L + + L LA + N K + + ++ S L
Sbjct: 990 DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE---LEV 1046
Query: 79 ALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETL 138
L++ + +E +K + + E+ L + EL+A EL+ +L + +
Sbjct: 1047 RLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA------ELKAQLAKKEEELQAA 1100
Query: 139 DSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLT 198
+ L+ + +E +L+++L S ++ + + + EE++ L
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHIS---DLQEDLESEKAARNKAEKQKRDLSEELEALK 1157
Query: 199 NAKHAVEDKCKLLSQENAELQA 220
D +
Sbjct: 1158 TELEDTLDTTATQQELRGSDYK 1179
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 50.1 bits (120), Expect = 3e-07
Identities = 31/220 (14%), Positives = 75/220 (34%), Gaps = 19/220 (8%)
Query: 65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVEL 124
++ + L + L+ + + QK ++ +A V L
Sbjct: 834 RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893
Query: 125 RKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETL- 183
+ + +K E +LK V++ +E+K +L++++ + ++L
Sbjct: 894 QCCYRRMMAKRELK--KLKIEARSVERYKKLHIGLENKIM---QLQRKIDEQNKEYKSLL 948
Query: 184 -------------DSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLD 230
+L+ E ++ ++ L +E A+L+ + Q +
Sbjct: 949 EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008
Query: 231 TLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT 270
T+ D + + L +L + L T E+N +
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 40.3 bits (93), Expect = 4e-04
Identities = 35/247 (14%), Positives = 85/247 (34%), Gaps = 7/247 (2%)
Query: 27 QLDTLLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLRLTSALQESTAN 86
+ +LAS + I D + + + + + + + L LQ +
Sbjct: 397 LANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREI 456
Query: 87 VEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRD 146
++E + L + + L+ K+ E +E LR E T+ R LD ++
Sbjct: 457 LDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFR---TVLDKAVQADG 513
Query: 147 EEVKKLTNAKHAVEDKCKAAVELRKELTSVR----SKNETLDSELKCRDEEVKKLTNAKH 202
+ + + + + CK EL + S + + + LK + ++ +
Sbjct: 514 QVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKERE 573
Query: 203 AVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHR 262
+E+ K ++ + ++ S R+ L ++ + + + +
Sbjct: 574 GLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLK 633
Query: 263 EINTALQ 269
I + Q
Sbjct: 634 NIQVSHQ 640
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 40.3 bits (94), Expect = 6e-04
Identities = 22/151 (14%), Positives = 59/151 (39%), Gaps = 6/151 (3%)
Query: 80 LQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLD 139
L+++ A V++ + L E + + + A E++++
Sbjct: 1929 LRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQV----- 1983
Query: 140 SELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN 199
+L R++E+ +A +K + LR+E+ + + L + + L
Sbjct: 1984 -QLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEK 2042
Query: 200 AKHAVEDKCKLLSQENAELQAAISLVQAQLD 230
+ +++ L +E +++ S V+ ++D
Sbjct: 2043 SIATYKEEYATLIRETEQIKTESSKVKNKVD 2073
Score = 29.1 bits (65), Expect = 2.1
Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 4/132 (3%)
Query: 134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEE 193
K + L+ E + +KKL + + V+D + + +EL KNE + +LK ++
Sbjct: 1911 KRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNREL---DVKNEQANQKLKQMVQD 1967
Query: 194 VKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGR 253
+ + + L N E+ A L+ + R ++ L +
Sbjct: 1968 QQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPL-REEVEQLENAANEL 2026
Query: 254 VAELATIHREIN 265
+ I I
Sbjct: 2027 KLKQDEIVATIT 2038
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 7e-04
Identities = 38/260 (14%), Positives = 91/260 (35%), Gaps = 73/260 (28%)
Query: 23 LVQAQLDTLLASQDAQ---RRIIDTL---NHQLAGRVADSANAK--KWEIELANLKSNNL 74
L + ++D ++ S+DA R+ TL ++ + + K+ L +
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF---LMS------ 96
Query: 75 RLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVS--EAAVELRKELTSVR 132
+ + ++ + + +Q +NQ KY VS + ++LR+ L +R
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-AKY-------NVSRLQPYLKLRQALLELR 148
Query: 133 S-KNETLD-------SEL---KCRDEEVKKLTNAK-HAVEDKCKAAVELRKELTSVRSKN 180
KN +D + + C +V+ + K + ++++ N
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---------------NLKNCN 193
Query: 181 ETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQR 240
+ ++ L + ++ S ++ ++ I +QA+L LL S+ +
Sbjct: 194 SP--------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 241 -----------RIIDTLNHQ 249
+ + N
Sbjct: 246 CLLVLLNVQNAKAWNAFNLS 265
Score = 33.3 bits (75), Expect = 0.082
Identities = 39/218 (17%), Positives = 62/218 (28%), Gaps = 67/218 (30%)
Query: 30 TLLASQDAQRRIID----------TLNHQLAGRVADSAN---AKKWEIELANL----KSN 72
LL ++ Q + D +L+H D K + +L +
Sbjct: 268 ILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 73 NLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIE--LEATKGVSEAAVELRK---E 127
N R S + ES + + +K N T IE L + E RK
Sbjct: 326 NPRRLSIIAES---IRDGLATWDNWKHVNCDKLTTIIESSLNVLE-----PAEYRKMFDR 377
Query: 128 LT----SVRSKNETLD---SELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKN 180
L+ S L ++ D V V +K + L + K
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMV---------VVNKLH-----KYSLVEKQPKE 423
Query: 181 ET-----LDSELKCRDEEVKKLTNAKHAVEDKCKLLSQ 213
T + ELK + E L H ++
Sbjct: 424 STISIPSIYLELKVKLENEYAL----HR-----SIVDH 452
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 37.8 bits (88), Expect = 0.003
Identities = 17/122 (13%), Positives = 46/122 (37%)
Query: 31 LLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLRLTSALQESTANVEEW 90
L Q +I +L+ + + + +++ E LK +L+ + ES N
Sbjct: 147 FLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRI 206
Query: 91 KKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVK 150
+L+ YK ++ + + E ++++ + + ++ ++ K
Sbjct: 207 HGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRK 266
Query: 151 KL 152
+L
Sbjct: 267 EL 268
Score = 32.0 bits (73), Expect = 0.21
Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 16/153 (10%)
Query: 97 YKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK 156
YK+ + L+ + I ++A + + + ++ + +++ S + EEV K
Sbjct: 128 YKDYSIFLENENILIKA-----KNFLVFQGDVEQIAAQSPVELSRM---FEEVSGSIQYK 179
Query: 157 HAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENA 216
E+ + +L K T + ELK ++
Sbjct: 180 KEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGS--------RYD 231
Query: 217 ELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQ 249
E + ++ + + L A + + +
Sbjct: 232 EAEGRFEVINNETEQLKAEEKKILNQFLKIKKK 264
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 37.0 bits (85), Expect = 0.005
Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 3/124 (2%)
Query: 88 EEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDE 147
E ++ +K +++ ++ V +A LRK+L K + +
Sbjct: 62 EGQGAKVTEWKLGEDRIELT-LQSGRYVRVHDAIFRLRKQLAEALGKKYKIGIRGIEVES 120
Query: 148 EVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCR--DEEVKKLTNAKHAVE 205
+ K+ K + ++ + E ++E+K R D + L A +
Sbjct: 121 FIIKVPADHELRMLKVPYIKSMENIEGGIQLELEVGEAEMKNRVPDRILTLLEEKIEAAQ 180
Query: 206 DKCK 209
K
Sbjct: 181 YGAK 184
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain,
signaling protein; 1.80A {Rattus norvegicus} SCOP:
b.55.1.4
Length = 168
Score = 35.2 bits (80), Expect = 0.009
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1 MTFTKTSQKFGQWSDIRANTV 21
MTFTKTSQKFGQW+D RANTV
Sbjct: 70 MTFTKTSQKFGQWADSRANTV 90
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.013
Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 11/39 (28%)
Query: 192 EEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLD 230
+ +KKL + KL + ++A A++ ++A ++
Sbjct: 20 QALKKL-------QASLKLYADDSA---PALA-IKATME 47
Score = 29.9 bits (66), Expect = 0.52
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 147 EEVKKLTNA-KHAVEDKC-----KAAVE 168
+ +KKL + K +D KA +E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold,
signaling protein; 1.70A {Rattus norvegicus} SCOP:
b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Length = 120
Score = 33.6 bits (76), Expect = 0.017
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1 MTFTKTSQKFGQWSDIRANTV 21
MTFTKTSQKFGQW+D RANTV
Sbjct: 65 MTFTKTSQKFGQWADSRANTV 85
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.041
Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 78 SALQESTANVEEW----KKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRS 133
L + ++ +W +K+LQ + K+ + +A K + E +++ +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQE-LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
Query: 134 KNETLDSE-LKCRDEEV 149
N D + D ++
Sbjct: 137 NNRIADKAFYQQPDADI 153
Score = 30.1 bits (67), Expect = 0.53
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 117 VSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVE---LRKEL 173
+++A L +E S+R E L+ D K + +K K +E R+
Sbjct: 74 IAQAD-RLTQEPESIRKWREEQRKRLQELDAASKV---MEQEWREKAKKDLEEWNQRQSE 129
Query: 174 TSVRSKNETLDSE---LKCRDEEV 194
++K ++ + D ++
Sbjct: 130 QVEKNKINNRIADKAFYQQPDADI 153
Score = 27.4 bits (60), Expect = 4.2
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 165 AAVELRKELTSVRSKNETLDSELKCRDE--EVKKLTNAKHAVEDKCKLLSQENAELQAAI 222
A L +E S+R E L+ D +V + + A +D + +++ +++
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 223 SLVQAQLDTLLASQDA 238
+ DA
Sbjct: 136 INNRIADKAFYQQPDA 151
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA,
poly-proline-binding domain, signaling protein; NMR
{Homo sapiens} SCOP: b.55.1.4
Length = 115
Score = 30.4 bits (68), Expect = 0.23
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 1 MTFTKTSQKFGQWSDIR 17
+ + + + F QW D R
Sbjct: 70 VKYNQATPNFHQWRDAR 86
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2;
solution structure, structural genomics, structural
genomics consortium, SGC; NMR {Homo sapiens}
Length = 126
Score = 28.4 bits (63), Expect = 1.3
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 1 MTFTKTSQKFGQWSDIR 17
+ +TK + F W
Sbjct: 81 LVYTKANPTFHHWKVDN 97
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A
{Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Length = 118
Score = 28.0 bits (62), Expect = 1.4
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 1 MTFTKTSQKFGQWSDIRA 18
+ + K + F W
Sbjct: 72 LVYNKVTPTFHHWRIGDK 89
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven
stranded anti-parallel beta barrel closed by AN alpha
helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Length = 130
Score = 28.2 bits (62), Expect = 1.6
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 1 MTFTKTSQKFGQWSDIR 17
+ + + + F QW D R
Sbjct: 69 LKYNQATPTFHQWRDAR 85
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain,
human sprouty-related, EVH1 domain-containing PR
Q7Z699; 2.45A {Homo sapiens}
Length = 130
Score = 28.1 bits (62), Expect = 1.6
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 1 MTFTKTSQKFGQWSDIRA 18
+ + K + F W
Sbjct: 79 LIYNKVTPTFHHWKIDDK 96
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.7 bits (65), Expect = 1.9
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 147 EEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED 206
E +K + + + KE +R + + +L +E+ K AK +D
Sbjct: 16 EIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKD 75
Query: 207 ---KCKLLSQENAELQAAISLVQAQLDTLLAS 235
+ + LS E E+ + L + +
Sbjct: 76 LIAEKEKLSNEKKEIIEKEAEADKNLRSKINQ 107
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 27.8 bits (62), Expect = 3.1
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLK 105
+L N + N L L+E + + + ++ K+EN+ LK
Sbjct: 20 DLKNTYTENQHLKERLEE----LAQLESEVADLKKENKDLK 56
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 26.3 bits (58), Expect = 4.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 86 NVEEWKKQLQAYKEENQKL 104
V+EWK + YK N L
Sbjct: 86 TVQEWKSNIARYKASNISL 104
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP;
1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB:
1mdx_A* 1mdz_A*
Length = 393
Score = 27.5 bits (62), Expect = 5.2
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 217 ELQAAISLVQ-AQLDTLLASQDAQRRIIDTLNHQLAG 252
+L AAI+L Q +LD L A + I + +A
Sbjct: 246 DLNAAIALAQLQKLDALNA---RRAAIAAQYHQAMAD 279
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 27.2 bits (61), Expect = 5.5
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 69 LKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKEL 128
+ S + L++ + EE + + E + K + + RKEL
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSN----------MERKEL 50
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 27.2 bits (59), Expect = 6.0
Identities = 9/55 (16%), Positives = 18/55 (32%)
Query: 111 LEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKA 165
+ A + A + S+ + S RD ++ + +ED C
Sbjct: 1 MAAIPALDPEAEPSMDVILVGSSELSSSVSPGTGRDLIAYEVKANQRNIEDICIC 55
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 27.2 bits (61), Expect = 6.9
Identities = 6/48 (12%), Positives = 19/48 (39%)
Query: 126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKEL 173
++ +++ K L ++ E++K + + +R+ L
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 27.1 bits (61), Expect = 7.8
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 86 NVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCR 145
+ K++L +E L K +EL+ + R+E+ + E L SE R
Sbjct: 10 KPDYVKERLATRDKELVSLVDKVLELD----------KRRREIIK---RLEALRSE---R 53
Query: 146 DEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKL 197
++ K++ K +D E++ + ++ + + L+ EL+ +EE+K
Sbjct: 54 NKLSKEIGKLKREGKD----TTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 26.8 bits (60), Expect = 7.9
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 9/36 (25%)
Query: 88 EEWKKQLQAYKEENQKLKTKYIE---------LEAT 114
+ W ++L+ E N KL K +E E T
Sbjct: 319 KPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGT 354
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A
2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Length = 880
Score = 27.1 bits (60), Expect = 8.5
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Query: 130 SVRSKNETLDSELKCRDEEVKK-LTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELK 188
++R ++ +L ++ +E+ + AK V++ + E R+ E+L++ +
Sbjct: 645 TMRLEDVSLGDDV---KKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLEESLENYIL 701
Query: 189 CRDEEVKKLTNAKHAVEDKC-KLLSQENAELQAAIS 223
L + D K L N A +
Sbjct: 702 ------DTLDKLRSTAGDIASKYLDPFNFAYVMART 731
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.121 0.317
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,583,289
Number of extensions: 200488
Number of successful extensions: 770
Number of sequences better than 10.0: 1
Number of HSP's gapped: 728
Number of HSP's successfully gapped: 150
Length of query: 270
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 178
Effective length of database: 4,133,061
Effective search space: 735684858
Effective search space used: 735684858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.3 bits)