RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5601
         (270 letters)



>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 145

 Score = 34.9 bits (80), Expect = 0.003
 Identities = 19/21 (90%), Positives = 20/21 (95%)

Query: 1  MTFTKTSQKFGQWSDIRANTV 21
          MTFTKTSQKFGQW+D RANTV
Sbjct: 67 MTFTKTSQKFGQWADSRANTV 87


>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
           {Plasmodium falciparum [TaxId: 5833]}
          Length = 314

 Score = 30.0 bits (67), Expect = 0.24
 Identities = 8/52 (15%), Positives = 22/52 (42%)

Query: 88  EEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLD 139
           EE+ KQ + Y+E  +    K      +        +  ++ +++  ++E  +
Sbjct: 252 EEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKE 303


>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
           {Escherichia coli [TaxId: 562]}
          Length = 331

 Score = 26.7 bits (58), Expect = 3.7
 Identities = 5/30 (16%), Positives = 12/30 (40%)

Query: 79  ALQESTANVEEWKKQLQAYKEENQKLKTKY 108
           A +   A    W ++  AY +   +   ++
Sbjct: 295 AKEAGQAKESAWNEKFAAYAKAYPQEAAEF 324


>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
           {Leishmania mexicana mexicana [TaxId: 44270]}
          Length = 336

 Score = 26.4 bits (57), Expect = 3.7
 Identities = 4/30 (13%), Positives = 11/30 (36%)

Query: 79  ALQESTANVEEWKKQLQAYKEENQKLKTKY 108
            + + +A  + W++ L  Y          +
Sbjct: 298 HIDKCSAEQKAWEELLAKYTAAFPAEGAAF 327


>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 335

 Score = 26.2 bits (57), Expect = 5.0
 Identities = 5/31 (16%), Positives = 13/31 (41%)

Query: 78  SALQESTANVEEWKKQLQAYKEENQKLKTKY 108
           + L+       +W K    Y+++  +L  + 
Sbjct: 298 TILKPGVEANNKWNKLFSEYQKKFPELGAEL 328


>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1
          domain-containing protein 1, Spred-1 {Western clawed
          frog (Xenopus tropicalis) [TaxId: 8364]}
          Length = 114

 Score = 25.2 bits (55), Expect = 5.1
 Identities = 3/17 (17%), Positives = 6/17 (35%)

Query: 1  MTFTKTSQKFGQWSDIR 17
          + + K +  F  W    
Sbjct: 68 LVYNKVTPTFHHWRIGD 84


>d1jeyb1 b.131.1.2 (B:242-545) Ku80 subunit middle domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 304

 Score = 25.7 bits (56), Expect = 5.7
 Identities = 6/46 (13%), Positives = 14/46 (30%)

Query: 131 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSV 176
           +  +       L    + +  + N    V  K +  +   K L  +
Sbjct: 253 LLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPL 298


>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
           (Zea mays) [TaxId: 4577]}
          Length = 338

 Score = 25.2 bits (54), Expect = 8.6
 Identities = 4/30 (13%), Positives = 9/30 (30%)

Query: 79  ALQESTANVEEWKKQLQAYKEENQKLKTKY 108
              E  A   +W  +   Y+++        
Sbjct: 302 HTPEGAALEADWNAKFAEYEKKYADDAATL 331


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.121    0.317 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 823,570
Number of extensions: 34083
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 40
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.4 bits)