Query psy5605
Match_columns 152
No_of_seqs 101 out of 319
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 21:49:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_S 40S ribosomal protein S 100.0 1.8E-69 6.1E-74 423.0 10.2 130 2-131 16-145 (146)
2 2xzm_T RPS19E; ribosome, trans 100.0 3.3E-68 1.1E-72 419.2 13.3 132 2-133 17-153 (155)
3 3u5c_T 40S ribosomal protein S 100.0 9.2E-69 3.2E-73 418.2 9.6 129 2-130 13-142 (144)
4 2v7f_A RPS19, RPS19E SSU ribos 100.0 2.7E-47 9.3E-52 296.7 9.8 132 2-133 11-142 (150)
5 1r7j_A Conserved hypothetical 97.4 0.00089 3E-08 47.2 8.8 64 46-126 10-73 (95)
6 2frh_A SARA, staphylococcal ac 97.2 0.0019 6.6E-08 46.0 8.3 71 49-133 42-120 (127)
7 2pg4_A Uncharacterized protein 97.2 0.0012 4E-08 45.0 6.6 71 43-127 14-90 (95)
8 3g3z_A NMB1585, transcriptiona 97.2 0.0028 9.5E-08 45.0 8.7 66 48-127 35-106 (145)
9 3neu_A LIN1836 protein; struct 97.1 0.0082 2.8E-07 43.6 10.6 89 42-145 14-109 (125)
10 3oop_A LIN2960 protein; protei 97.0 0.0032 1.1E-07 44.5 8.0 67 48-128 41-113 (143)
11 2gxg_A 146AA long hypothetical 97.0 0.0042 1.4E-07 43.7 8.2 65 48-127 41-111 (146)
12 2h09_A Transcriptional regulat 96.9 0.003 1E-07 46.0 7.3 59 53-125 49-107 (155)
13 3k0l_A Repressor protein; heli 96.9 0.0064 2.2E-07 44.2 8.8 66 48-127 50-121 (162)
14 1sfx_A Conserved hypothetical 96.9 0.0064 2.2E-07 40.5 8.1 69 48-130 24-97 (109)
15 1jgs_A Multiple antibiotic res 96.9 0.0068 2.3E-07 42.3 8.5 67 48-128 38-110 (138)
16 3eco_A MEPR; mutlidrug efflux 96.9 0.0067 2.3E-07 42.5 8.5 66 48-127 35-108 (139)
17 3ech_A MEXR, multidrug resista 96.9 0.0049 1.7E-07 43.6 7.7 66 48-127 41-112 (142)
18 3s2w_A Transcriptional regulat 96.8 0.0066 2.3E-07 43.9 8.5 66 49-128 55-126 (159)
19 3by6_A Predicted transcription 96.8 0.016 5.4E-07 42.3 10.6 88 42-145 12-107 (126)
20 3bja_A Transcriptional regulat 96.8 0.0066 2.3E-07 42.2 7.9 66 48-127 37-108 (139)
21 2nyx_A Probable transcriptiona 96.8 0.0066 2.3E-07 44.6 8.3 65 49-127 50-120 (168)
22 3e6m_A MARR family transcripti 96.8 0.0064 2.2E-07 44.1 8.0 65 49-127 58-128 (161)
23 1tbx_A ORF F-93, hypothetical 96.7 0.0062 2.1E-07 41.3 7.3 66 48-127 12-84 (99)
24 2rdp_A Putative transcriptiona 96.7 0.011 3.6E-07 41.9 8.7 66 48-127 46-117 (150)
25 2hr3_A Probable transcriptiona 96.7 0.0095 3.2E-07 42.0 8.4 67 47-127 38-111 (147)
26 3bro_A Transcriptional regulat 96.7 0.012 4E-07 41.1 8.7 66 48-127 38-111 (141)
27 2qww_A Transcriptional regulat 96.7 0.0059 2E-07 43.5 7.2 65 48-126 45-117 (154)
28 3tgn_A ADC operon repressor AD 96.7 0.0058 2E-07 43.0 7.0 62 48-124 42-109 (146)
29 3bpv_A Transcriptional regulat 96.7 0.0093 3.2E-07 41.5 8.0 66 48-127 33-104 (138)
30 2oqg_A Possible transcriptiona 96.6 0.014 4.9E-07 40.0 8.6 64 48-127 25-92 (114)
31 1on2_A Transcriptional regulat 96.6 0.0062 2.1E-07 43.5 6.8 57 55-125 19-75 (142)
32 2eth_A Transcriptional regulat 96.6 0.014 4.8E-07 41.9 8.7 66 48-127 48-119 (154)
33 4hbl_A Transcriptional regulat 96.6 0.0055 1.9E-07 43.9 6.5 67 48-128 45-117 (149)
34 2x4h_A Hypothetical protein SS 96.6 0.0086 2.9E-07 42.5 7.4 55 56-125 29-83 (139)
35 3hsr_A HTH-type transcriptiona 96.5 0.0079 2.7E-07 42.7 6.9 67 48-128 40-112 (140)
36 3kp7_A Transcriptional regulat 96.5 0.011 3.9E-07 42.1 7.7 64 49-127 43-114 (151)
37 2fbi_A Probable transcriptiona 96.5 0.012 3.9E-07 41.0 7.5 66 48-127 40-111 (142)
38 2qvo_A Uncharacterized protein 96.5 0.0059 2E-07 41.6 5.8 68 45-127 13-88 (95)
39 1stz_A Heat-inducible transcri 96.5 0.0034 1.2E-07 53.3 5.5 68 45-124 18-92 (338)
40 2fa5_A Transcriptional regulat 96.5 0.021 7.1E-07 41.0 8.9 65 49-127 54-124 (162)
41 3deu_A Transcriptional regulat 96.5 0.018 6.2E-07 42.5 8.8 65 49-127 58-129 (166)
42 3tqn_A Transcriptional regulat 96.5 0.0062 2.1E-07 43.4 6.0 90 42-145 10-107 (113)
43 2fsw_A PG_0823 protein; alpha- 96.5 0.0056 1.9E-07 42.7 5.7 63 48-124 29-97 (107)
44 3jw4_A Transcriptional regulat 96.5 0.0075 2.6E-07 42.9 6.4 67 48-128 45-119 (148)
45 3bj6_A Transcriptional regulat 96.5 0.017 5.9E-07 40.8 8.3 66 48-127 44-115 (152)
46 1ub9_A Hypothetical protein PH 96.4 0.0095 3.2E-07 39.7 6.5 70 48-131 20-95 (100)
47 3cjn_A Transcriptional regulat 96.4 0.015 5.1E-07 41.8 8.0 65 49-127 57-127 (162)
48 2nnn_A Probable transcriptiona 96.4 0.014 5E-07 40.4 7.7 66 48-127 42-113 (140)
49 2fbh_A Transcriptional regulat 96.4 0.026 9E-07 39.4 9.0 65 49-127 42-113 (146)
50 3nrv_A Putative transcriptiona 96.4 0.019 6.4E-07 40.6 8.2 66 48-127 44-115 (148)
51 1lj9_A Transcriptional regulat 96.3 0.022 7.4E-07 39.9 8.2 65 49-127 34-104 (144)
52 3bdd_A Regulatory protein MARR 96.3 0.012 4E-07 41.0 6.6 59 48-120 35-99 (142)
53 2a61_A Transcriptional regulat 96.3 0.016 5.6E-07 40.5 7.3 66 48-127 37-108 (145)
54 2o0m_A Transcriptional regulat 96.3 0.0014 4.8E-08 54.8 1.9 66 45-125 21-86 (345)
55 2hzt_A Putative HTH-type trans 96.3 0.013 4.4E-07 41.0 6.6 62 48-123 18-85 (107)
56 2bv6_A MGRA, HTH-type transcri 96.3 0.01 3.5E-07 41.7 6.1 66 48-127 41-112 (142)
57 3cdh_A Transcriptional regulat 96.3 0.024 8.2E-07 40.4 8.2 65 49-127 48-118 (155)
58 1q1h_A TFE, transcription fact 96.3 0.0051 1.7E-07 42.8 4.4 53 47-113 21-78 (110)
59 3cuo_A Uncharacterized HTH-typ 96.2 0.022 7.6E-07 37.8 7.4 66 48-127 28-96 (99)
60 2pex_A Transcriptional regulat 96.2 0.013 4.3E-07 41.8 6.5 64 49-126 52-121 (153)
61 3u2r_A Regulatory protein MARR 96.2 0.022 7.5E-07 41.5 7.9 65 49-127 51-123 (168)
62 2ek5_A Predicted transcription 96.2 0.051 1.7E-06 39.8 9.8 64 43-120 6-76 (129)
63 3fm5_A Transcriptional regulat 96.1 0.03 1E-06 39.8 8.1 65 49-127 44-115 (150)
64 1s3j_A YUSO protein; structura 96.1 0.019 6.5E-07 40.7 7.1 66 48-127 41-112 (155)
65 3hrs_A Metalloregulator SCAR; 96.1 0.014 4.9E-07 45.7 6.7 63 50-126 8-74 (214)
66 4ham_A LMO2241 protein; struct 96.1 0.022 7.5E-07 41.4 7.3 61 42-116 15-82 (134)
67 3l7w_A Putative uncharacterize 96.1 0.012 4.2E-07 41.5 5.7 69 49-128 14-89 (108)
68 1z7u_A Hypothetical protein EF 95.9 0.016 5.5E-07 40.8 5.8 63 48-124 26-94 (112)
69 3nqo_A MARR-family transcripti 95.8 0.047 1.6E-06 41.1 8.2 67 48-128 45-119 (189)
70 3f3x_A Transcriptional regulat 95.8 0.042 1.4E-06 38.7 7.4 66 48-128 41-112 (144)
71 4a5n_A Uncharacterized HTH-typ 95.7 0.025 8.5E-07 42.1 6.4 64 48-125 30-99 (131)
72 2f2e_A PA1607; transcription f 95.7 0.029 9.9E-07 41.5 6.6 61 48-123 28-93 (146)
73 1okr_A MECI, methicillin resis 95.6 0.0093 3.2E-07 41.5 3.5 67 48-124 14-84 (123)
74 4b8x_A SCO5413, possible MARR- 95.6 0.029 9.9E-07 40.7 6.2 64 49-126 40-111 (147)
75 3boq_A Transcriptional regulat 95.5 0.038 1.3E-06 39.5 6.6 66 48-127 51-123 (160)
76 1xmk_A Double-stranded RNA-spe 95.4 0.021 7E-07 39.7 4.7 60 46-120 13-76 (79)
77 2p8t_A Hypothetical protein PH 95.4 0.036 1.2E-06 44.6 6.7 54 56-124 28-81 (200)
78 3df8_A Possible HXLR family tr 95.3 0.028 9.7E-07 39.8 5.2 63 48-124 31-97 (111)
79 3f8b_A Transcriptional regulat 95.3 0.049 1.7E-06 39.1 6.5 47 82-128 43-97 (116)
80 1bja_A Transcription regulator 95.3 0.036 1.2E-06 39.9 5.7 67 46-127 18-85 (95)
81 3ic7_A Putative transcriptiona 95.3 0.0057 1.9E-07 44.6 1.4 42 83-124 46-87 (126)
82 1y0u_A Arsenical resistance op 95.2 0.029 1E-06 38.1 4.9 54 48-118 35-88 (96)
83 4aik_A Transcriptional regulat 95.2 0.2 6.9E-06 36.5 9.6 65 49-127 36-107 (151)
84 1z91_A Organic hydroperoxide r 95.2 0.018 6.1E-07 40.5 3.7 65 48-126 44-114 (147)
85 2obp_A Putative DNA-binding pr 95.1 0.053 1.8E-06 38.9 6.2 62 48-123 20-91 (96)
86 3ihu_A Transcriptional regulat 95.0 0.076 2.6E-06 40.9 7.2 67 43-123 18-90 (222)
87 3hhh_A Transcriptional regulat 95.0 0.096 3.3E-06 37.8 7.3 86 49-144 18-111 (116)
88 2b0l_A GTP-sensing transcripti 94.9 0.024 8.3E-07 40.2 3.9 51 60-124 45-97 (102)
89 2fxa_A Protease production reg 94.9 0.061 2.1E-06 41.5 6.5 65 48-126 52-122 (207)
90 2y75_A HTH-type transcriptiona 94.9 0.09 3.1E-06 37.4 6.9 60 45-118 10-74 (129)
91 1yyv_A Putative transcriptiona 94.8 0.12 4E-06 37.8 7.5 63 48-124 39-107 (131)
92 2e1n_A PEX, period extender; c 94.7 0.027 9.4E-07 42.2 3.8 63 82-146 64-135 (138)
93 2g9w_A Conserved hypothetical 94.6 0.11 3.7E-06 37.5 6.8 60 48-117 13-78 (138)
94 1ku9_A Hypothetical protein MJ 94.6 0.47 1.6E-05 32.7 9.9 65 48-126 30-99 (152)
95 3f6v_A Possible transcriptiona 94.5 0.065 2.2E-06 40.2 5.5 67 47-129 61-131 (151)
96 3b73_A PHIH1 repressor-like pr 94.5 0.076 2.6E-06 38.7 5.7 64 47-122 16-79 (111)
97 3c7j_A Transcriptional regulat 94.4 0.11 3.8E-06 41.0 7.0 52 58-123 49-100 (237)
98 1hsj_A Fusion protein consisti 94.3 0.085 2.9E-06 44.4 6.5 45 84-128 432-482 (487)
99 3pqk_A Biofilm growth-associat 94.3 0.045 1.5E-06 37.3 4.0 57 48-119 27-86 (102)
100 2xrn_A HTH-type transcriptiona 94.1 0.31 1E-05 38.5 9.0 62 44-119 6-69 (241)
101 2fbk_A Transcriptional regulat 94.1 0.1 3.5E-06 38.5 5.8 65 49-127 74-147 (181)
102 4fx0_A Probable transcriptiona 94.1 0.21 7.2E-06 36.3 7.4 42 85-126 65-111 (148)
103 1xma_A Predicted transcription 94.1 0.11 3.8E-06 38.8 6.0 72 49-127 46-125 (145)
104 1sd4_A Penicillinase repressor 94.0 0.25 8.5E-06 34.2 7.4 51 48-108 14-64 (126)
105 4esb_A Transcriptional regulat 94.0 0.18 6.1E-06 36.2 6.8 70 49-127 14-91 (115)
106 2hs5_A Putative transcriptiona 94.0 0.1 3.5E-06 41.1 5.9 68 42-123 29-102 (239)
107 1fx7_A Iron-dependent represso 94.0 0.072 2.5E-06 41.8 5.0 54 58-125 22-77 (230)
108 1mkm_A ICLR transcriptional re 93.9 0.81 2.8E-05 36.0 11.0 63 44-120 8-71 (249)
109 1yg2_A Gene activator APHA; vi 93.8 0.21 7.1E-06 37.8 7.2 68 48-122 6-81 (179)
110 2esh_A Conserved hypothetical 93.5 0.1 3.5E-06 37.1 4.8 73 48-127 17-97 (118)
111 3sxy_A Transcriptional regulat 93.4 0.061 2.1E-06 41.4 3.6 65 45-123 16-86 (218)
112 2d1h_A ST1889, 109AA long hypo 93.4 0.51 1.7E-05 31.1 7.8 45 49-107 26-71 (109)
113 2co5_A Viral protein F93; vira 93.4 0.16 5.4E-06 36.1 5.5 44 84-127 42-88 (99)
114 4esf_A PADR-like transcription 93.3 0.26 8.8E-06 35.5 6.6 58 82-140 40-105 (117)
115 2qq9_A Diphtheria toxin repres 93.2 0.11 3.6E-06 40.8 4.7 65 48-126 10-78 (226)
116 1v4r_A Transcriptional repress 93.1 0.1 3.6E-06 35.8 4.1 61 42-116 12-79 (102)
117 2zfw_A PEX; five alpha-helices 93.0 0.063 2.2E-06 40.8 3.2 62 83-146 75-145 (148)
118 2kko_A Possible transcriptiona 92.9 0.3 1E-05 34.0 6.3 58 48-120 29-89 (108)
119 2jt1_A PEFI protein; solution 92.9 0.23 7.9E-06 34.0 5.5 53 45-112 5-63 (77)
120 3f6o_A Probable transcriptiona 92.8 0.32 1.1E-05 34.2 6.4 65 48-127 22-89 (118)
121 1p4x_A Staphylococcal accessor 92.7 0.22 7.4E-06 40.2 6.1 46 85-130 187-238 (250)
122 3r4k_A Transcriptional regulat 92.7 0.29 9.8E-06 39.1 6.7 58 44-115 6-65 (260)
123 1r1u_A CZRA, repressor protein 92.5 0.38 1.3E-05 33.0 6.4 54 48-117 30-87 (106)
124 3jth_A Transcription activator 92.3 0.66 2.3E-05 31.0 7.3 60 48-122 27-89 (98)
125 2di3_A Bacterial regulatory pr 92.3 0.16 5.5E-06 39.5 4.6 44 61-118 31-78 (239)
126 2dql_A PEX protein; circadian 92.3 0.23 7.7E-06 35.6 5.1 46 82-127 52-106 (115)
127 3aaf_A Werner syndrome ATP-dep 92.1 0.55 1.9E-05 34.8 7.1 77 47-123 19-109 (134)
128 1u2w_A CADC repressor, cadmium 92.0 0.26 8.7E-06 35.0 5.1 57 48-119 46-106 (122)
129 1p4x_A Staphylococcal accessor 91.7 0.68 2.3E-05 37.3 7.8 69 49-131 39-115 (250)
130 2wte_A CSA3; antiviral protein 91.5 0.44 1.5E-05 38.5 6.6 66 45-124 153-219 (244)
131 2g7u_A Transcriptional regulat 91.5 0.92 3.1E-05 35.9 8.4 60 44-118 14-74 (257)
132 2htj_A P fimbrial regulatory p 91.5 0.4 1.4E-05 31.6 5.3 45 48-106 4-48 (81)
133 3u1d_A Uncharacterized protein 91.3 0.31 1.1E-05 37.6 5.2 63 48-123 33-108 (151)
134 2o0y_A Transcriptional regulat 91.2 0.83 2.8E-05 36.3 7.8 62 44-119 23-85 (260)
135 2jsc_A Transcriptional regulat 91.0 0.44 1.5E-05 33.6 5.5 54 48-117 25-82 (118)
136 3r0a_A Putative transcriptiona 91.0 1.5 5E-05 31.2 8.3 78 48-139 30-115 (123)
137 3ri2_A Transcriptional regulat 90.4 0.68 2.3E-05 33.8 6.1 45 83-127 49-100 (123)
138 3cta_A Riboflavin kinase; stru 90.2 0.34 1.2E-05 37.7 4.6 73 40-126 9-84 (230)
139 1hw1_A FADR, fatty acid metabo 90.1 0.62 2.1E-05 35.8 6.0 59 43-115 9-74 (239)
140 3l9f_A Putative uncharacterize 90.1 0.2 6.8E-06 39.7 3.2 64 56-125 47-118 (204)
141 1ylf_A RRF2 family protein; st 90.0 0.75 2.6E-05 33.8 6.1 57 46-116 16-75 (149)
142 3elk_A Putative transcriptiona 89.8 0.2 6.8E-06 36.1 2.8 42 86-127 47-96 (117)
143 1r1t_A Transcriptional repress 89.7 0.83 2.8E-05 32.6 6.0 63 49-129 51-116 (122)
144 3t8r_A Staphylococcus aureus C 89.6 0.75 2.6E-05 33.9 5.8 56 48-117 15-75 (143)
145 3l09_A Putative transcriptiona 89.5 0.32 1.1E-05 40.4 4.1 75 44-129 22-105 (266)
146 3mq0_A Transcriptional repress 89.2 0.92 3.2E-05 36.6 6.6 59 44-116 30-89 (275)
147 1xn7_A Hypothetical protein YH 88.7 0.81 2.8E-05 31.2 5.1 44 48-105 6-49 (78)
148 2lkp_A Transcriptional regulat 88.7 0.83 2.8E-05 31.5 5.2 67 49-131 37-104 (119)
149 3eet_A Putative GNTR-family tr 88.4 1.2 4E-05 36.0 6.7 60 42-115 30-96 (272)
150 3lwf_A LIN1550 protein, putati 88.0 1.2 4E-05 33.8 6.1 45 57-115 43-89 (159)
151 3edp_A LIN2111 protein; APC883 87.5 1.4 4.8E-05 34.7 6.5 60 42-115 10-76 (236)
152 1i1g_A Transcriptional regulat 87.2 2 6.9E-05 30.2 6.6 66 48-128 8-85 (141)
153 2ia2_A Putative transcriptiona 86.9 2 7E-05 34.1 7.2 58 44-116 21-79 (265)
154 1uly_A Hypothetical protein PH 86.7 2.9 0.0001 32.2 7.8 67 48-129 24-106 (192)
155 2k02_A Ferrous iron transport 86.7 0.98 3.4E-05 31.7 4.6 45 48-106 6-50 (87)
156 2wv0_A YVOA, HTH-type transcri 85.9 2.2 7.6E-05 33.6 6.9 60 42-115 11-77 (243)
157 1p6r_A Penicillinase repressor 85.9 0.65 2.2E-05 30.3 3.2 49 49-107 14-62 (82)
158 3k69_A Putative transcription 85.7 1.4 4.9E-05 33.2 5.5 45 57-115 27-73 (162)
159 2k4b_A Transcriptional regulat 84.5 0.81 2.8E-05 32.3 3.3 51 49-110 40-90 (99)
160 2heo_A Z-DNA binding protein 1 81.6 2.8 9.5E-05 27.0 4.9 46 48-107 14-60 (67)
161 1xd7_A YWNA; structural genomi 81.5 1.3 4.5E-05 32.3 3.6 54 48-116 13-68 (145)
162 2w48_A Sorbitol operon regulat 81.2 2.7 9.2E-05 34.2 5.7 50 43-106 6-56 (315)
163 3bwg_A Uncharacterized HTH-typ 79.6 1.2 4.2E-05 35.0 3.0 41 60-114 31-71 (239)
164 3f8m_A GNTR-family protein tra 79.6 1.1 3.7E-05 35.6 2.7 59 42-115 15-78 (248)
165 3kfw_X Uncharacterized protein 78.9 2.2 7.5E-05 34.8 4.4 71 45-127 4-77 (247)
166 2rkh_A Putative APHA-like tran 78.8 1.1 3.6E-05 35.0 2.4 31 92-122 54-91 (180)
167 1in4_A RUVB, holliday junction 78.7 4 0.00014 33.0 6.0 57 49-120 267-324 (334)
168 2pn6_A ST1022, 150AA long hypo 77.9 5 0.00017 28.6 5.7 67 48-128 7-86 (150)
169 2dk5_A DNA-directed RNA polyme 75.0 6.3 0.00021 27.3 5.3 41 49-103 25-67 (91)
170 2fu4_A Ferric uptake regulatio 75.0 2.8 9.5E-05 27.2 3.3 52 47-107 20-73 (83)
171 3u5c_Z RP45, S31, YS23, 40S ri 73.7 1.5 5.3E-05 32.3 1.9 34 59-106 60-93 (108)
172 2ijl_A AGR_C_4647P, molybdenum 73.2 9.2 0.00032 28.3 6.2 41 85-125 51-98 (135)
173 1bm9_A RTP, TER, replication t 73.0 9.7 0.00033 28.3 6.2 40 85-124 53-104 (122)
174 3iz6_V 40S ribosomal protein S 72.8 1.5 5.2E-05 32.4 1.7 24 83-106 71-94 (108)
175 2ia0_A Putative HTH-type trans 72.2 22 0.00074 26.4 8.2 66 48-127 21-104 (171)
176 2cg4_A Regulatory protein ASNC 71.7 13 0.00046 26.5 6.7 67 48-128 12-90 (152)
177 3ls0_A SLL1638 protein, PSBQ; 70.5 5.4 0.00019 30.3 4.4 21 38-65 49-69 (133)
178 2p4w_A Transcriptional regulat 70.5 6.7 0.00023 30.5 5.1 44 48-106 19-62 (202)
179 1olt_A Oxygen-independent copr 70.1 3 0.0001 35.7 3.3 64 54-128 378-441 (457)
180 2qlz_A Transcription factor PF 69.6 3.2 0.00011 33.4 3.1 42 48-104 16-57 (232)
181 3hhg_A Transcriptional regulat 69.3 16 0.00056 27.3 6.9 48 87-136 32-82 (306)
182 2ra5_A Putative transcriptiona 69.1 1.1 3.9E-05 35.4 0.4 33 84-116 52-84 (247)
183 2qm3_A Predicted methyltransfe 68.4 8.3 0.00029 31.8 5.5 57 48-122 47-103 (373)
184 2zkz_A Transcriptional repress 68.3 8.1 0.00028 26.1 4.6 59 48-121 31-92 (99)
185 3zsu_A TLL2057 protein, cyanoq 67.3 4.6 0.00016 30.6 3.4 22 37-65 45-66 (130)
186 2xzm_8 RPS25E,; ribosome, tran 67.3 3.1 0.00011 32.1 2.5 34 59-106 64-97 (143)
187 3szp_A Transcriptional regulat 65.7 16 0.00055 26.8 6.1 47 87-135 30-79 (291)
188 1ixc_A CBNR, LYSR-type regulat 64.9 16 0.00054 27.2 6.0 44 87-132 30-76 (294)
189 3fzv_A Probable transcriptiona 64.5 7 0.00024 29.3 4.0 46 89-135 35-83 (306)
190 1oyi_A Double-stranded RNA-bin 64.0 11 0.00038 26.1 4.6 44 48-106 21-64 (82)
191 3fxq_A LYSR type regulator of 62.9 23 0.0008 26.7 6.7 43 87-131 31-76 (305)
192 2vxz_A Pyrsv_GP04; viral prote 61.8 56 0.0019 25.6 8.8 90 39-147 6-95 (165)
193 3pfi_A Holliday junction ATP-d 61.4 4.3 0.00015 32.1 2.4 49 58-121 279-328 (338)
194 3k2z_A LEXA repressor; winged 60.3 14 0.00049 27.7 5.1 41 58-112 24-64 (196)
195 2w25_A Probable transcriptiona 58.5 19 0.00066 25.5 5.3 43 48-104 11-53 (150)
196 1tzy_B Histone H2B; histone-fo 57.3 19 0.00064 27.2 5.1 42 84-135 37-78 (126)
197 2cfx_A HTH-type transcriptiona 56.2 22 0.00076 25.2 5.3 43 48-104 9-51 (144)
198 1qbj_A Protein (double-strande 56.1 23 0.00079 23.9 5.1 44 49-106 15-61 (81)
199 2p5v_A Transcriptional regulat 55.8 22 0.00076 25.6 5.3 65 48-127 14-92 (162)
200 1bia_A BIRA bifunctional prote 55.7 23 0.0008 28.9 6.0 58 45-116 6-64 (321)
201 2cyy_A Putative HTH-type trans 52.1 22 0.00075 25.3 4.7 43 48-104 11-53 (151)
202 1b9m_A Protein (mode); DNA-bin 51.6 44 0.0015 25.6 6.6 40 91-131 53-99 (265)
203 2dbb_A Putative HTH-type trans 50.5 25 0.00086 24.9 4.8 43 48-104 13-55 (151)
204 3isp_A HTH-type transcriptiona 49.7 27 0.00092 26.3 5.1 42 87-131 35-79 (303)
205 2v1x_A ATP-dependent DNA helic 49.4 38 0.0013 30.0 6.7 76 46-121 446-534 (591)
206 2qc0_A Uncharacterized protein 46.2 17 0.00059 30.5 3.8 28 83-111 322-349 (373)
207 1j5y_A Transcriptional regulat 45.8 40 0.0014 25.1 5.4 58 44-116 21-80 (187)
208 2esn_A Probable transcriptiona 45.7 20 0.00068 27.0 3.7 46 87-134 39-87 (310)
209 2qlz_A Transcription factor PF 44.1 29 0.001 27.7 4.7 50 49-113 169-218 (232)
210 1qzz_A RDMB, aclacinomycin-10- 44.0 57 0.002 26.0 6.4 48 56-117 47-96 (374)
211 3eqx_A FIC domain containing t 42.2 25 0.00085 29.9 4.2 48 49-111 302-349 (373)
212 1qgp_A Protein (double strande 41.5 41 0.0014 22.1 4.4 45 48-106 18-65 (77)
213 1tw3_A COMT, carminomycin 4-O- 41.2 49 0.0017 26.3 5.6 48 56-117 50-97 (360)
214 2e1c_A Putative HTH-type trans 41.2 45 0.0016 24.7 5.1 43 48-104 31-73 (171)
215 1p1x_A Deoxyribose-phosphate a 40.0 32 0.0011 28.1 4.4 16 23-38 164-179 (260)
216 3i4p_A Transcriptional regulat 38.7 51 0.0017 23.9 4.9 67 48-128 7-87 (162)
217 1z6r_A MLC protein; transcript 38.1 52 0.0018 27.0 5.4 45 47-105 19-63 (406)
218 2nqb_D Histone H2B; nucleosome 37.1 52 0.0018 24.6 4.8 42 84-135 34-75 (123)
219 1hqc_A RUVB; extended AAA-ATPa 36.2 19 0.00066 27.9 2.4 33 88-121 281-313 (324)
220 3tvt_B PINS, partner of inscut 36.0 7.5 0.00026 24.8 -0.0 23 85-107 16-38 (50)
221 2v0f_A Chromodomain-helicase-D 36.0 3.5 0.00012 29.4 -1.8 24 4-27 38-62 (87)
222 4fyk_A Deoxyribonucleoside 5'- 33.9 23 0.00079 26.9 2.4 32 52-103 4-35 (152)
223 1z05_A Transcriptional regulat 33.6 51 0.0018 27.5 4.7 47 45-105 40-86 (429)
224 2e9x_B DNA replication complex 33.4 9.9 0.00034 29.9 0.3 19 7-25 48-68 (185)
225 2hoe_A N-acetylglucosamine kin 33.4 41 0.0014 27.6 4.0 43 48-105 24-66 (380)
226 1t6s_A Conserved hypothetical 32.7 87 0.003 23.9 5.5 52 43-111 92-147 (162)
227 1i96_V Translation initiation 32.6 22 0.00076 24.9 2.0 31 83-113 48-79 (89)
228 3rkx_A Biotin-[acetyl-COA-carb 32.3 24 0.00082 29.2 2.5 54 48-115 7-63 (323)
229 2j5y_A GA module, peptostrepto 32.3 44 0.0015 22.3 3.3 23 123-145 10-32 (61)
230 3i53_A O-methyltransferase; CO 32.1 81 0.0028 24.8 5.5 51 56-120 36-86 (332)
231 2gqq_A Leucine-responsive regu 30.8 12 0.00042 27.2 0.4 42 48-103 17-58 (163)
232 2ip2_A Probable phenazine-spec 30.2 86 0.0029 24.5 5.3 51 56-120 39-89 (334)
233 4eiv_A Deoxyribose-phosphate a 30.0 56 0.0019 27.7 4.4 18 22-39 179-196 (297)
234 3mz1_A Putative transcriptiona 29.6 11 0.00038 27.7 0.0 41 89-131 29-72 (300)
235 2h9b_A HTH-type transcriptiona 29.1 12 0.0004 28.7 0.0 42 89-132 32-76 (312)
236 4a18_B RPL39, ribosomal protei 28.5 50 0.0017 21.3 3.0 33 6-41 12-44 (52)
237 2vn2_A DNAD, chromosome replic 28.3 40 0.0014 23.8 2.8 24 83-106 62-85 (128)
238 3u5e_l L46, YL40, 60S ribosoma 28.1 50 0.0017 21.2 2.9 33 6-41 12-44 (51)
239 3mcz_A O-methyltransferase; ad 27.5 74 0.0025 25.1 4.5 52 55-121 53-104 (352)
240 4g6q_A Putative uncharacterize 27.0 48 0.0016 24.9 3.1 44 49-106 28-71 (182)
241 3iz5_o 60S ribosomal protein L 26.5 46 0.0016 21.4 2.5 33 6-41 12-44 (51)
242 3lcz_A YCZA, inhibitor of trap 26.3 15 0.00052 23.3 0.2 36 78-125 11-49 (53)
243 2a4a_A Deoxyribose-phosphate a 25.5 41 0.0014 28.0 2.7 13 23-35 186-198 (281)
244 2yu3_A DNA-directed RNA polyme 25.5 38 0.0013 23.8 2.2 45 48-106 41-87 (95)
245 2d48_A Interleukin-4; four hel 25.4 30 0.001 26.3 1.7 18 41-58 43-60 (129)
246 3gwz_A MMCR; methyltransferase 25.3 81 0.0028 25.5 4.5 50 56-119 69-119 (369)
247 4gdh_A DJ-1, uncharacterized p 24.7 50 0.0017 24.7 2.9 45 93-137 137-184 (194)
248 2h98_A HTH-type transcriptiona 24.0 16 0.00056 28.2 0.0 41 89-131 32-75 (313)
249 1u3o_A Huntingtin-associated p 23.8 9.7 0.00033 26.6 -1.2 9 37-45 50-58 (82)
250 1uth_A LYSR-type regulatory pr 23.7 17 0.00057 27.9 0.0 42 89-132 45-89 (315)
251 3ndo_A Deoxyribose-phosphate a 23.5 51 0.0017 26.5 2.9 34 22-61 159-193 (231)
252 2r3s_A Uncharacterized protein 22.7 81 0.0028 24.5 3.8 48 57-119 38-85 (335)
253 3ijw_A Aminoglycoside N3-acety 22.5 25 0.00086 29.0 0.8 89 3-94 54-148 (268)
254 4asn_A TUBR; transcription, tu 22.2 1.1E+02 0.0037 22.0 4.0 39 84-123 46-88 (101)
255 2nyg_A YOKD protein; PFAM02522 21.7 52 0.0018 27.0 2.6 84 3-94 52-147 (273)
256 2fmy_A COOA, carbon monoxide o 21.2 63 0.0022 23.3 2.8 23 83-105 178-200 (220)
257 3v32_B Ribonuclease ZC3H12A; r 21.1 86 0.0029 24.5 3.7 27 90-116 85-114 (185)
258 2jss_A Chimera of histone H2B. 20.6 1.3E+02 0.0045 23.2 4.6 41 85-135 5-45 (192)
259 3lst_A CALO1 methyltransferase 20.4 75 0.0026 25.4 3.3 50 56-120 53-102 (348)
260 3dp7_A SAM-dependent methyltra 20.2 1.4E+02 0.0049 24.0 5.0 49 57-120 49-97 (363)
No 1
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-69 Score=423.04 Aligned_cols=130 Identities=53% Similarity=0.990 Sum_probs=127.8
Q ss_pred chHHHhhhccccCCCCCCCcchhhhcccCCcCCCCCCCchHHHHHHHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCcc
Q psy5605 2 VSVSYIGFRPSKSGKMKVPEWVDIVKSAKFKELAPYDPDWFYTRCAALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHF 81 (152)
Q Consensus 2 ~~I~~~A~~LKk~gki~~PeW~d~vKTg~~KElaP~d~DW~YiRaASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~ 81 (152)
.||++||+|||++|+|++|+|+||||||++||+||+||||||+|||||+||||++||+||++|+++|||+||||++|+||
T Consensus 16 ~fI~~~A~~LK~~gki~~P~W~d~vKTg~~KEl~P~d~DW~Y~RaASi~R~lYlrg~vGV~~lrk~YGg~krrG~~P~h~ 95 (146)
T 3iz6_S 16 EFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHF 95 (146)
T ss_dssp HHHHHHHTTGGGSSCCCCTTTGGGCCSSSSCSSSTHHHHTHHHHHHHHHHHHHHHCSBCHHHHHSSSCCCCCCCSSCCCC
T ss_pred HHHHHHHHHHHHcCCCCCCchHHHhhccccccCCCCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHCCCCCCCCCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHHHHHHHH
Q psy5605 82 CRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAAQIRVSK 131 (152)
Q Consensus 82 ~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~ 131 (152)
++|||+|||+||||||++||||+++++||+|||+||++||+||.||++++
T Consensus 96 ~~asg~iiR~~LQqLE~~g~Vek~~~gGR~lT~~G~~~LD~iA~~v~~~~ 145 (146)
T 3iz6_S 96 CKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDVTI 145 (146)
T ss_dssp CCCCHHHHHHHHHHHHHHTSEEEETTTEEEECHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHCCCeEecCCCCcEECHhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998999999999999999999998875
No 2
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=100.00 E-value=3.3e-68 Score=419.22 Aligned_cols=132 Identities=33% Similarity=0.592 Sum_probs=128.6
Q ss_pred chHHHhhhccccCCCCCCCcchhhhcccCCcCCCCCCCchHHHHHHHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCcc
Q psy5605 2 VSVSYIGFRPSKSGKMKVPEWVDIVKSAKFKELAPYDPDWFYTRCAALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHF 81 (152)
Q Consensus 2 ~~I~~~A~~LKk~gki~~PeW~d~vKTg~~KElaP~d~DW~YiRaASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~ 81 (152)
.||++||+|||++|+|++|+|+||||||++||+||+||||||+|||||+||||++||+||++|+++|||++|||++|+||
T Consensus 17 ~fI~~~A~~LKk~gki~~P~W~d~vKTg~~KElaP~d~DW~YiRaASi~R~lYlrg~vGV~~lrk~YGg~krrG~~P~h~ 96 (155)
T 2xzm_T 17 DFIREYASHLKKANKLSIPEFTQWTTTSVARELAPQDSDWVYIRTAALARKVYLKPHTGISTLKHIFGSNKDRGNLRNKH 96 (155)
T ss_dssp HHHHHHHHHTTSSCCSCCCHHHHSCCCSSSCSSCCSSTTHHHHHHHHHHHHHHHSTTCCHHHHHHHTCCEECCSSSCCEE
T ss_pred HHHHHHHHHHHhcCCCCCCchHhhhhccccccCCCCCCchHHHHHHHHHHHHhccCCCCHHHHHHHHCCCCCCCCCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCcceecCCC-----CceeCcchHhhHHHHHHHHHHHHHH
Q psy5605 82 CRSSGSVARKALQALEQVNIIEKSDDG-----GRKITSHGRRDMDRIAAQIRVSKKE 133 (152)
Q Consensus 82 ~~asg~iiR~~LQqLE~~glVek~~~g-----GR~lT~~G~~~LD~iA~~i~~~~~~ 133 (152)
++|||+|||+||||||++||||++++| ||+|||+||+|||+||.+|..+.+|
T Consensus 97 ~~asg~iiR~~LQqLE~~g~Vek~~~g~~~k~GR~lT~~G~~~LDriA~~i~~~~~~ 153 (155)
T 2xzm_T 97 QACHGKILRWALKSLEDLKIIRKDKNSATKKFSRVITKEGMTELNRIATQIAIKQRQ 153 (155)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEECSSCSSSTTCEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHCCCEeecCCCCcCCCCCEECHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999877 9999999999999999999977665
No 3
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=100.00 E-value=9.2e-69 Score=418.24 Aligned_cols=129 Identities=47% Similarity=0.783 Sum_probs=127.0
Q ss_pred chHHHhhhccccCCCCCCCcchhhhcccCCcCCCCCCCc-hHHHHHHHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCc
Q psy5605 2 VSVSYIGFRPSKSGKMKVPEWVDIVKSAKFKELAPYDPD-WFYTRCAALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSH 80 (152)
Q Consensus 2 ~~I~~~A~~LKk~gki~~PeW~d~vKTg~~KElaP~d~D-W~YiRaASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h 80 (152)
.||++||+|||++|+|++|+|+||||||++||+||+||| |||+||||||||||++||+||++|+++|||+||||++|+|
T Consensus 13 ~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kEl~P~d~D~W~Y~RaASi~R~lYl~g~vGV~~lrk~YGg~krrG~~P~h 92 (144)
T 3u5c_T 13 DFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYK 92 (144)
T ss_dssp HHHHHHHHHHHHHCCCCCTTTTTSCCSCTTCSSCCSSCSSSHHHHHHHHHHHHHTSSBCCHHHHHHHHCCEEEETTEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCchHhHhhccccccCCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHCCCCCCCCCCcc
Confidence 489999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHHHHHHH
Q psy5605 81 FCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAAQIRVS 130 (152)
Q Consensus 81 ~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA~~i~~~ 130 (152)
|++|||+|||+||||||++|||++++++||+|||+||++||+||.||+++
T Consensus 93 ~~~asg~iiR~~LQqLE~~g~vek~~~~GR~lT~~G~~~LD~iA~~v~~~ 142 (144)
T 3u5c_T 93 HIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAAQTLEE 142 (144)
T ss_dssp ECCCCHHHHHHHHHHHHHTTSEECCSSSSCEECHHHHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHCCCeeecCCCCcEECHhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999899999999999999999999876
No 4
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=100.00 E-value=2.7e-47 Score=296.67 Aligned_cols=132 Identities=37% Similarity=0.702 Sum_probs=118.9
Q ss_pred chHHHhhhccccCCCCCCCcchhhhcccCCcCCCCCCCchHHHHHHHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCcc
Q psy5605 2 VSVSYIGFRPSKSGKMKVPEWVDIVKSAKFKELAPYDPDWFYTRCAALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHF 81 (152)
Q Consensus 2 ~~I~~~A~~LKk~gki~~PeW~d~vKTg~~KElaP~d~DW~YiRaASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~ 81 (152)
.||++||+|||++|+|++|+|+||||||.++|++|+|+||||.|+|++||++|++|+.|+..|++.|||+||||++|+||
T Consensus 11 ~~i~~~a~~lk~~~ki~~P~w~~~vKt~~~ke~~p~~~~~~y~ria~~lr~~i~~g~~G~~~La~~~gg~k~~g~~p~~~ 90 (150)
T 2v7f_A 11 LLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGIERLRTYYGGRKNRGHAPERF 90 (150)
T ss_dssp HHHHHHHHHHTTCTTCCCCSCGGGCCC------CHHHHTHHHHHHHHHHHHHHHHCSBCHHHHHHHHCC----CCCTTSC
T ss_pred HHHHHHHHHHHhcCCCCCcchhhhhcccccccCCCCCcchHHHHHHHHHHHHHHhCCCCHHHHHHHHCCCccCCcCCccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHHHHHHHHHH
Q psy5605 82 CRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAAQIRVSKKE 133 (152)
Q Consensus 82 ~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~~~ 133 (152)
++.|+++||.+||+||++|||++.+++|+.+|+.|+++||+||.+|.+++.+
T Consensus 91 ~~vSr~tVR~AL~~Le~~GlV~~~~~~G~~Vt~~~~~~l~~ia~~i~~~~~~ 142 (150)
T 2v7f_A 91 YKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELKKELEE 142 (150)
T ss_dssp CCHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHCCCEEEeCCCceEECCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998889999999999999999999988755
No 5
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=97.45 E-value=0.00089 Score=47.23 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=53.0
Q ss_pred HHHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHH
Q psy5605 46 CAALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAA 125 (152)
Q Consensus 46 aASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA~ 125 (152)
...||+.++ .+ +|...|...- .=|-+.+|..+..|++.|||++.. +|-.||++|+..|+.+..
T Consensus 10 i~~IL~~i~-~~-~~~t~La~~~--------------~ls~~~~~~~l~~L~~~GLI~~~~-~~~~LT~kG~~~l~~l~~ 72 (95)
T 1r7j_A 10 IQAILEACK-SG-SPKTRIMYGA--------------NLSYALTGRYIKMLMDLEIIRQEG-KQYMLTKKGEELLEDIRK 72 (95)
T ss_dssp HHHHHHHHT-TC-BCHHHHHHHH--------------TCCHHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cC-CCHHHHHHHh--------------CcCHHHHHHHHHHHHHCCCeEEEC-CeeEEChhHHHHHHHHHH
Confidence 357888777 45 8888888875 456689999999999999999986 589999999988887765
Q ss_pred H
Q psy5605 126 Q 126 (152)
Q Consensus 126 ~ 126 (152)
-
T Consensus 73 ~ 73 (95)
T 1r7j_A 73 F 73 (95)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=97.20 E-value=0.0019 Score=46.02 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=53.7
Q ss_pred HHhhHhhc--CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhH
Q psy5605 49 LARHIYMR--SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGGR----KITSHGRRDM 120 (152)
Q Consensus 49 ilRkiYl~--g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gGR----~lT~~G~~~L 120 (152)
+|..|+-. +++.+..|+...|- +.+-+-.+++.||+.|||+..+ .++| .||++|+..+
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNY--------------KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSS--------------HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHhccCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 66677777 78888888887642 3456677889999999998754 3455 6999999999
Q ss_pred HHHHHHHHHHHHH
Q psy5605 121 DRIAAQIRVSKKE 133 (152)
Q Consensus 121 D~iA~~i~~~~~~ 133 (152)
+++...+...+.+
T Consensus 108 ~~~~~~~~~~~~~ 120 (127)
T 2frh_A 108 ESLLSRVNKRITE 120 (127)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9987776555444
No 7
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=97.17 E-value=0.0012 Score=45.05 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=55.7
Q ss_pred HHHHHHHHhhHhhcC-CcchhhHHHHhCCCCCCCCCCCccCCCchhH-HHHHHHHHHhCCcceecCCCCc----eeCcch
Q psy5605 43 YTRCAALARHIYMRS-PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSV-ARKALQALEQVNIIEKSDDGGR----KITSHG 116 (152)
Q Consensus 43 YiRaASilRkiYl~g-~vGV~~L~~~YGg~krrG~~P~h~~~asg~i-iR~~LQqLE~~glVek~~~gGR----~lT~~G 116 (152)
.+|...+|..++-.+ ++.+..|++..|- +.+- +-.+++.||+.|||+.++.++| .||++|
T Consensus 14 ~~~~l~~L~~l~~~~~~~t~~eLa~~l~i--------------s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G 79 (95)
T 2pg4_A 14 LIRILPTLLEFEKKGYEPSLAEIVKASGV--------------SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKG 79 (95)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHCC--------------CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHCC--------------CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhH
Confidence 357777887777777 8999999999852 3455 6778899999999996654454 799999
Q ss_pred HhhHHHHHHHH
Q psy5605 117 RRDMDRIAAQI 127 (152)
Q Consensus 117 ~~~LD~iA~~i 127 (152)
++.++.+....
T Consensus 80 ~~~~~~~~~~~ 90 (95)
T 2pg4_A 80 RRLAECLEKCR 90 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998876543
No 8
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=97.16 E-value=0.0028 Score=44.95 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=52.7
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+++.+..|+...|- +.+-+-.+++.||+.|||+..++ ++| .||++|+..++
T Consensus 35 ~iL~~l~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 100 (145)
T 3g3z_A 35 AVLYTLATEGSRTQKHIGEKWSL--------------PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAA 100 (145)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHH
Confidence 47888888999999999998753 34667789999999999997653 344 49999999988
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
.+...+
T Consensus 101 ~~~~~~ 106 (145)
T 3g3z_A 101 PLTESA 106 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 9
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=97.05 E-value=0.0082 Score=43.55 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhHhhcCCc-------chhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCc
Q psy5605 42 FYTRCAALARHIYMRSPV-------GVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITS 114 (152)
Q Consensus 42 ~YiRaASilRkiYl~g~v-------GV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~ 114 (152)
.|...+.-++.--+.|.+ ....|+..|| -|..-+|.+|+.|+..|+|+..+..|-.+++
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~--------------vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLA--------------VNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCeEEEecCCEEEEec
Confidence 456666666666555532 5778888884 4779999999999999999999988989988
Q ss_pred chHhhHHHHHHHHHHHHHHHHHHHHhhcCce
Q psy5605 115 HGRRDMDRIAAQIRVSKKEAALQALAAQGIT 145 (152)
Q Consensus 115 ~G~~~LD~iA~~i~~~~~~~~~~~~~~~~~~ 145 (152)
.- ..++.+-.......-+.-.+.++++|++
T Consensus 80 ~~-~~~~~~~~~~~~~~le~~~~~~~~~g~~ 109 (125)
T 3neu_A 80 DK-ALFDQLKKELADAITERFLEEAKSIGLD 109 (125)
T ss_dssp CH-HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred Cc-hhhHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 43 3444443333344445555667777765
No 10
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=97.02 E-value=0.0032 Score=44.55 Aligned_cols=67 Identities=13% Similarity=0.258 Sum_probs=52.3
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.++ ++| .||++|+..++
T Consensus 41 ~iL~~l~~~~~~t~~eLa~~l~~--------------~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 106 (143)
T 3oop_A 41 SVLEGIEANEPISQKEIALWTKK--------------DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETT 106 (143)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCC--------------CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHH
Confidence 36777887899999999998742 44667789999999999997653 354 49999999999
Q ss_pred HHHHHHH
Q psy5605 122 RIAAQIR 128 (152)
Q Consensus 122 ~iA~~i~ 128 (152)
.+...+.
T Consensus 107 ~~~~~~~ 113 (143)
T 3oop_A 107 ELRDIVE 113 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766543
No 11
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=96.98 E-value=0.0042 Score=43.68 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=51.6
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.|+..|+ .+++.+..|+...| -+.+-+..+++.||+.|||+..++ ++| .||++|+..++
T Consensus 41 ~iL~~l~-~~~~~~~ela~~l~--------------~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 105 (146)
T 2gxg_A 41 LVLRATS-DGPKTMAYLANRYF--------------VTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFN 105 (146)
T ss_dssp HHHHHHT-TSCBCHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHh-cCCcCHHHHHHHhC--------------CCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHH
Confidence 3677788 89999999999874 245778889999999999987543 343 69999999998
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
.+...+
T Consensus 106 ~~~~~~ 111 (146)
T 2gxg_A 106 KGIEIY 111 (146)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 12
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=96.93 E-value=0.003 Score=45.97 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=49.5
Q ss_pred HhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHH
Q psy5605 53 IYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAA 125 (152)
Q Consensus 53 iYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA~ 125 (152)
++-.+++.+..|...+| -|.+-++.+|+.||+.|||+..++.|-.||+.|+..++.+..
T Consensus 49 l~~~~~~~~~~la~~l~--------------vs~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~~~~~~ 107 (155)
T 2h09_A 49 IREVGEARQVDMAARLG--------------VSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRE 107 (155)
T ss_dssp HHHHSCCCHHHHHHHHT--------------SCHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHHHH
T ss_pred HHhCCCcCHHHHHHHhC--------------cCHHHHHHHHHHHHHCCCEEEecCCceEEChhHHHHHHHHHH
Confidence 34458889999999884 356789999999999999998887788999999998887654
No 13
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.89 E-value=0.0064 Score=44.19 Aligned_cols=66 Identities=20% Similarity=0.183 Sum_probs=50.3
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+++.++.|....|- +.+-+-.+++.||+.|||++.++ .+| .||++|+..++
T Consensus 50 ~iL~~l~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 50 TALSVLAAKPNLSNAKLAERSFI--------------KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHH
Confidence 36667777788888888888743 33556788999999999996653 344 59999999999
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
++...+
T Consensus 116 ~~~~~~ 121 (162)
T 3k0l_A 116 QCNQVV 121 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 14
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=96.88 E-value=0.0064 Score=40.53 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=54.7
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC-CCc----eeCcchHhhHHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD-GGR----KITSHGRRDMDR 122 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~-gGR----~lT~~G~~~LD~ 122 (152)
.|+..|.-.+++.+..|....| -+.+-+...|+.||+.|||+..++ ++| .+|+.|+..++.
T Consensus 24 ~il~~l~~~~~~s~~ela~~l~--------------is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~ 89 (109)
T 1sfx_A 24 RIYSLLLERGGMRVSEIARELD--------------LSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKE 89 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHH
Confidence 4777777789999999999984 356789999999999999987643 455 699999998887
Q ss_pred HHHHHHHH
Q psy5605 123 IAAQIRVS 130 (152)
Q Consensus 123 iA~~i~~~ 130 (152)
+...+...
T Consensus 90 ~~~~~~~~ 97 (109)
T 1sfx_A 90 FKSSILGE 97 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655443
No 15
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=96.87 E-value=0.0068 Score=42.31 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=51.1
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gGR----~lT~~G~~~LD 121 (152)
.++..|+-.+++.+..|+...| -+.+-+-.+++.||+.|||+..+ +++| .||++|+..++
T Consensus 38 ~iL~~l~~~~~~~~~~la~~l~--------------~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 103 (138)
T 1jgs_A 38 KVLCSIRCAACITPVELKKVLS--------------VDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHHHHHSSBCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHC--------------CChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHH
Confidence 3666777778888999988764 24466777999999999998754 3344 59999999998
Q ss_pred HHHHHHH
Q psy5605 122 RIAAQIR 128 (152)
Q Consensus 122 ~iA~~i~ 128 (152)
++...+.
T Consensus 104 ~~~~~~~ 110 (138)
T 1jgs_A 104 QCHQLVG 110 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766554
No 16
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=96.87 E-value=0.0067 Score=42.50 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=50.9
Q ss_pred HHHhhHhhcC--CcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCCc----eeCcchHhh
Q psy5605 48 ALARHIYMRS--PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGGR----KITSHGRRD 119 (152)
Q Consensus 48 SilRkiYl~g--~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gGR----~lT~~G~~~ 119 (152)
.||..|+-.+ ++.+..|+...|- +.+-+-.+++.||+.|||+..+ .++| .||++|+..
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~--------------~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~ 100 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQR--------------TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKL 100 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCC--------------CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHH
Confidence 4777888876 8999999998752 3466778999999999998664 3455 499999999
Q ss_pred HHHHHHHH
Q psy5605 120 MDRIAAQI 127 (152)
Q Consensus 120 LD~iA~~i 127 (152)
++.+....
T Consensus 101 ~~~~~~~~ 108 (139)
T 3eco_A 101 VEAFTSIF 108 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876554
No 17
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.85 E-value=0.0049 Score=43.63 Aligned_cols=66 Identities=11% Similarity=0.169 Sum_probs=48.3
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+++.++.|+...|- +.+-+-.+++.||+.|||+..++ ++| .||++|+..++
T Consensus 41 ~vL~~l~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 106 (142)
T 3ech_A 41 HVLKLIDEQRGLNLQDLGRQMCR--------------DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHL 106 (142)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHC-----------------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHhCC--------------CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHH
Confidence 47778888899999999998753 23567788999999999997653 344 59999999999
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
.+...+
T Consensus 107 ~~~~~~ 112 (142)
T 3ech_A 107 HAELIM 112 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 18
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=96.84 E-value=0.0066 Score=43.86 Aligned_cols=66 Identities=12% Similarity=0.203 Sum_probs=49.9
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHHH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMDR 122 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD~ 122 (152)
||..|+-.+++.+..|+...|- +.+-+-.+++.||+.|||++.++ ++| .||++|+..++.
T Consensus 55 vL~~l~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 120 (159)
T 3s2w_A 55 FLMRLYREDGINQESLSDYLKI--------------DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPD 120 (159)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHH
Confidence 5666777788888888888743 34677789999999999986643 454 499999999988
Q ss_pred HHHHHH
Q psy5605 123 IAAQIR 128 (152)
Q Consensus 123 iA~~i~ 128 (152)
+...+.
T Consensus 121 ~~~~~~ 126 (159)
T 3s2w_A 121 MKKIAS 126 (159)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 19
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=96.84 E-value=0.016 Score=42.26 Aligned_cols=88 Identities=14% Similarity=0.165 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhHhhcCC------c-chhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCc
Q psy5605 42 FYTRCAALARHIYMRSP------V-GVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITS 114 (152)
Q Consensus 42 ~YiRaASilRkiYl~g~------v-GV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~ 114 (152)
.|-+.+..+|.--+.|. + ....|+..|| -|..-+|.+|+.|+..|+|+..+..|-.+++
T Consensus 12 ~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~--------------vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~ 77 (126)
T 3by6_A 12 VYLQLVDRIKNEVATDVLSANDQLPSVRETALQEK--------------INPNTVAKAYKELEAQKVIRTIPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEETTTEEEECS
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEecCCeEEEcc
Confidence 46677776666555543 2 6788888884 4678999999999999999999988989988
Q ss_pred chHhhHHHHH-HHHHHHHHHHHHHHHhhcCce
Q psy5605 115 HGRRDMDRIA-AQIRVSKKEAALQALAAQGIT 145 (152)
Q Consensus 115 ~G~~~LD~iA-~~i~~~~~~~~~~~~~~~~~~ 145 (152)
...++..+. .++... -+.--..++++|++
T Consensus 78 -~~~~~~~~~~~~~r~~-le~~~~~~~~~~~~ 107 (126)
T 3by6_A 78 -NTASVKNSNQNRLLAD-LSQVIAELIKSGVK 107 (126)
T ss_dssp -CHHHHHHHHHHHHHHH-HHHHHHHHHHTTCC
T ss_pred -CchhhhHhHHHHHHHH-HHHHHHHHHHcCCC
Confidence 444444432 222222 22233345556654
No 20
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=96.80 E-value=0.0066 Score=42.15 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=50.8
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gGR----~lT~~G~~~LD 121 (152)
.|+..|+-.+++.+..|+...|- +.+-+-.+++.||+.|||+..+ .++| .||++|+..++
T Consensus 37 ~iL~~l~~~~~~~~~ela~~l~~--------------~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (139)
T 3bja_A 37 GVIQVLAKSGKVSMSKLIENMGC--------------VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKK 102 (139)
T ss_dssp HHHHHHHHSCSEEHHHHHHHCSS--------------CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCC--------------ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHH
Confidence 36777788899999999998743 2345677899999999998753 3344 59999999998
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
++...+
T Consensus 103 ~~~~~~ 108 (139)
T 3bja_A 103 QVDVQY 108 (139)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 21
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=96.80 E-value=0.0066 Score=44.59 Aligned_cols=65 Identities=15% Similarity=0.310 Sum_probs=48.4
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGGR----KITSHGRRDMDR 122 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gGR----~lT~~G~~~LD~ 122 (152)
||..|+-.+++.+..|+...| -+.+-+-.+++.||+.|||++.+ .++| .||++|+..+++
T Consensus 50 iL~~L~~~~~~t~~eLa~~l~--------------is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 115 (168)
T 2nyx_A 50 TLVILSNHGPINLATLATLLG--------------VQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQ 115 (168)
T ss_dssp HHHHHHHHCSEEHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHhC--------------CCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 555666667788888888763 34566777899999999998754 3344 599999999988
Q ss_pred HHHHH
Q psy5605 123 IAAQI 127 (152)
Q Consensus 123 iA~~i 127 (152)
+...+
T Consensus 116 ~~~~~ 120 (168)
T 2nyx_A 116 VTEHR 120 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 22
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=96.77 E-value=0.0064 Score=44.15 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=48.7
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHHH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMDR 122 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD~ 122 (152)
||..|+-.+++.+..|....| -+.+-+-.+++.||+.|||++.++ ++| .||++|+..+++
T Consensus 58 vL~~l~~~~~~t~~eLa~~l~--------------~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 123 (161)
T 3e6m_A 58 LLSSLSAYGELTVGQLATLGV--------------MEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAE 123 (161)
T ss_dssp HHHHHHHHSEEEHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHH
Confidence 555566667777888877753 345677789999999999997653 344 599999999998
Q ss_pred HHHHH
Q psy5605 123 IAAQI 127 (152)
Q Consensus 123 iA~~i 127 (152)
+...+
T Consensus 124 ~~~~~ 128 (161)
T 3e6m_A 124 ISPLI 128 (161)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 23
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.74 E-value=0.0062 Score=41.31 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=49.6
Q ss_pred HHHhhHhhcCCcchhhH----HHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCC---CceeCcchHhhH
Q psy5605 48 ALARHIYMRSPVGVKTV----TKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDG---GRKITSHGRRDM 120 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L----~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~g---GR~lT~~G~~~L 120 (152)
.||..|+-.+++.+..| +... .-+.+-+-.+|+.||+.|||++.++. .-.||++|+..+
T Consensus 12 ~iL~~l~~~~~~~~~el~~~la~~l--------------~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 12 IVLAYLYDNEGIATYDLYKKVNAEF--------------PMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHTTCTTCBHHHHHHHHHTTS--------------CCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHc--------------CCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHH
Confidence 36667777888999888 4432 23556778899999999999976542 236999999999
Q ss_pred HHHHHHH
Q psy5605 121 DRIAAQI 127 (152)
Q Consensus 121 D~iA~~i 127 (152)
+.+...+
T Consensus 78 ~~~~~~~ 84 (99)
T 1tbx_A 78 ISLKTAI 84 (99)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876554
No 24
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=96.73 E-value=0.011 Score=41.85 Aligned_cols=66 Identities=11% Similarity=0.227 Sum_probs=49.9
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+++.+..|+...| -+.+-+-.+++.||+.|||+..++ ++| .||++|+..++
T Consensus 46 ~iL~~l~~~~~~t~~ela~~l~--------------~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 111 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSNKMY--------------LACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIE 111 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------CCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHH
Confidence 3666777778899999998874 245667789999999999987542 343 59999999998
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
.+...+
T Consensus 112 ~~~~~~ 117 (150)
T 2rdp_A 112 EVIEKR 117 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 25
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.73 E-value=0.0095 Score=41.99 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=51.7
Q ss_pred HHHHhhHhh-cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhh
Q psy5605 47 AALARHIYM-RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRD 119 (152)
Q Consensus 47 ASilRkiYl-~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~ 119 (152)
..||..|+- .+++.+..|+...| -+.+-+..+++.||+.|||+..++ ++| .||++|+..
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~--------------i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~ 103 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAER--------------MRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRN 103 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhC--------------CChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHH
Confidence 357778888 89999999999874 345778889999999999997653 344 599999999
Q ss_pred HHHHHHHH
Q psy5605 120 MDRIAAQI 127 (152)
Q Consensus 120 LD~iA~~i 127 (152)
++.+...+
T Consensus 104 ~~~~~~~~ 111 (147)
T 2hr3_A 104 LYGNRAKR 111 (147)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876554
No 26
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=96.70 E-value=0.012 Score=41.09 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=51.1
Q ss_pred HHHhhHhhcC--CcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhh
Q psy5605 48 ALARHIYMRS--PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRD 119 (152)
Q Consensus 48 SilRkiYl~g--~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~ 119 (152)
.||..|+-.+ ++.+..|+...|- +.+-+..+++.||+.|||+..++ ++| .||++|+..
T Consensus 38 ~iL~~l~~~~~~~~~~~ela~~l~~--------------~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~ 103 (141)
T 3bro_A 38 TIIDYLSRNKNKEVLQRDLESEFSI--------------KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKL 103 (141)
T ss_dssp HHHHHHHHTTTSCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTT
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCC--------------CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHH
Confidence 3677788777 8999999998853 45678889999999999986542 343 489999999
Q ss_pred HHHHHHHH
Q psy5605 120 MDRIAAQI 127 (152)
Q Consensus 120 LD~iA~~i 127 (152)
++.+...+
T Consensus 104 ~~~~~~~~ 111 (141)
T 3bro_A 104 ETIILSYM 111 (141)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776543
No 27
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=96.69 E-value=0.0059 Score=43.50 Aligned_cols=65 Identities=23% Similarity=0.302 Sum_probs=50.8
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCccee--cC--CCCc----eeCcchHhh
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEK--SD--DGGR----KITSHGRRD 119 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek--~~--~gGR----~lT~~G~~~ 119 (152)
.||..|+-.+++.+..|+...|- +.+-+-.+++.||+.|||+. .+ .++| .||++|+..
T Consensus 45 ~iL~~l~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~ 110 (154)
T 2qww_A 45 AMINVIYSTPGISVADLTKRLII--------------TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDL 110 (154)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHH
Confidence 36777888899999999998852 34567789999999999998 43 3344 599999999
Q ss_pred HHHHHHH
Q psy5605 120 MDRIAAQ 126 (152)
Q Consensus 120 LD~iA~~ 126 (152)
++++...
T Consensus 111 ~~~~~~~ 117 (154)
T 2qww_A 111 SKRSTAN 117 (154)
T ss_dssp HHHHHSC
T ss_pred HHHHHhh
Confidence 8877655
No 28
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=96.68 E-value=0.0058 Score=43.05 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=48.4
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+ +.++.|+...| -+.+-+..+++.||+.|||+..++ ++| .||++|+..++
T Consensus 42 ~iL~~l~~~~-~t~~eLa~~l~--------------~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~ 106 (146)
T 3tgn_A 42 HILMLLSEES-LTNSELARRLN--------------VSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAE 106 (146)
T ss_dssp HHHHHHTTCC-CCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHH
Confidence 4777888777 99999999985 355788999999999999997653 344 49999999999
Q ss_pred HHH
Q psy5605 122 RIA 124 (152)
Q Consensus 122 ~iA 124 (152)
.+.
T Consensus 107 ~~~ 109 (146)
T 3tgn_A 107 EHH 109 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 29
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=96.68 E-value=0.0093 Score=41.47 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=52.3
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.|+..|+-.+++.+..|+...| -+.+-+..+++.||+.|||+..++ ++| .||++|+..++
T Consensus 33 ~iL~~l~~~~~~~~~ela~~l~--------------~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~ 98 (138)
T 3bpv_A 33 ACLLRIHREPGIKQDELATFFH--------------VDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIP 98 (138)
T ss_dssp HHHHHHHHSTTCBHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHH
Confidence 4677777789999999999874 245678889999999999997542 233 69999999998
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
++...+
T Consensus 99 ~~~~~~ 104 (138)
T 3bpv_A 99 LILKVE 104 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 30
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.63 E-value=0.014 Score=40.00 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=52.4
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCc----eeCcchHhhHHHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGR----KITSHGRRDMDRI 123 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR----~lT~~G~~~LD~i 123 (152)
.|++.| ..||+.+..|....| -|.+-+...|+.||+.|+|+..++ || .||++|...+...
T Consensus 25 ~IL~~L-~~~~~~~~ela~~l~--------------is~~tv~~~l~~L~~~gli~~~~~-gr~~~y~l~~~~~~~~~~~ 88 (114)
T 2oqg_A 25 EILTEL-GRADQSASSLATRLP--------------VSRQAIAKHLNALQACGLVESVKV-GREIRYRALGAELNKTART 88 (114)
T ss_dssp HHHHHH-HHSCBCHHHHHHHSS--------------SCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECSHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeeEEec-CCEEEEEechHHHHHHHHH
Confidence 477777 689999999999874 356789999999999999998765 54 7999999888776
Q ss_pred HHHH
Q psy5605 124 AAQI 127 (152)
Q Consensus 124 A~~i 127 (152)
...+
T Consensus 89 ~~~~ 92 (114)
T 2oqg_A 89 LERI 92 (114)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 31
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=96.60 E-value=0.0062 Score=43.55 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=48.9
Q ss_pred hcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHH
Q psy5605 55 MRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAA 125 (152)
Q Consensus 55 l~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA~ 125 (152)
-.+++.+..|+...| -|.+-++.+|+.||+.|||+..+.++-.||++|+..++.+..
T Consensus 19 ~~~~~~~~ela~~l~--------------vs~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~~~~~~~ 75 (142)
T 1on2_A 19 EKGYARVSDIAEALA--------------VHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRLVY 75 (142)
T ss_dssp HHSSCCHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHhC--------------CCHHHHHHHHHHHHHCCCEEEeeCceEEEchhHHHHHHHHHH
Confidence 468999999999984 356788999999999999999887778999999999887654
No 32
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.59 E-value=0.014 Score=41.88 Aligned_cols=66 Identities=14% Similarity=0.231 Sum_probs=50.2
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+++.+..|....| -+.+-+-.+++.||+.|||+..+ .++| .||++|+..++
T Consensus 48 ~iL~~l~~~~~~t~~ela~~l~--------------is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 113 (154)
T 2eth_A 48 YAFLYVALFGPKKMKEIAEFLS--------------TTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG 113 (154)
T ss_dssp HHHHHHHHHCCBCHHHHHHHTT--------------SCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHH
Confidence 4666777778888888888764 24567778999999999998754 3344 58999999998
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
.+...+
T Consensus 114 ~~~~~~ 119 (154)
T 2eth_A 114 EILSNF 119 (154)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 33
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=96.59 E-value=0.0055 Score=43.93 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=49.9
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+++.++.|+...|- +.+-+-.+++.||+.|||+..++ ++| .||++|+..++
T Consensus 45 ~iL~~l~~~~~~~~~eLa~~l~~--------------~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 110 (149)
T 4hbl_A 45 LVMLTLWEENPQTLNSIGRHLDL--------------SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQE 110 (149)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHH
Confidence 46777787899999999998743 45677789999999999997653 355 49999999998
Q ss_pred HHHHHHH
Q psy5605 122 RIAAQIR 128 (152)
Q Consensus 122 ~iA~~i~ 128 (152)
.+...+.
T Consensus 111 ~~~~~~~ 117 (149)
T 4hbl_A 111 AVFEAIS 117 (149)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766543
No 34
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=96.58 E-value=0.0086 Score=42.55 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=47.2
Q ss_pred cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHH
Q psy5605 56 RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAA 125 (152)
Q Consensus 56 ~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA~ 125 (152)
.+++.+..|+...| -+.+-++.+|+.||+.|||+..+ ++-.||++|+...+.+..
T Consensus 29 ~~~~s~~ela~~l~--------------is~~tv~~~l~~Le~~Gli~r~~-~~~~Lt~~g~~~~~~~~~ 83 (139)
T 2x4h_A 29 GEGAKINRIAKDLK--------------IAPSSVFEEVSHLEEKGLVKKKE-DGVWITNNGTRSINYLIK 83 (139)
T ss_dssp TSCBCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhC--------------CChHHHHHHHHHHHHCCCEEecC-CeEEEChhHHHHHHHHHH
Confidence 57899999999985 35678999999999999999888 688999999998776654
No 35
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=96.52 E-value=0.0079 Score=42.65 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=51.5
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+++.++.|+...|- +.+-+-.+++.||+.|||++.++ ++| .||++|+..++
T Consensus 40 ~vL~~l~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (140)
T 3hsr_A 40 IVLMAIENDEKLNIKKLGERVFL--------------DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKS 105 (140)
T ss_dssp HHHHHSCTTCEEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCC--------------ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHH
Confidence 47777887889999999998742 45677889999999999997653 344 58999999999
Q ss_pred HHHHHHH
Q psy5605 122 RIAAQIR 128 (152)
Q Consensus 122 ~iA~~i~ 128 (152)
++.....
T Consensus 106 ~~~~~~~ 112 (140)
T 3hsr_A 106 PLAEISV 112 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8775543
No 36
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=96.51 E-value=0.011 Score=42.10 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=47.0
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCccee----cCCCCc----eeCcchHhhH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEK----SDDGGR----KITSHGRRDM 120 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek----~~~gGR----~lT~~G~~~L 120 (152)
||..| -.+++.++.|+...|- +.+-+-.+++.||+.|||+. ++.++| .||++|+..+
T Consensus 43 iL~~l-~~~~~t~~eLa~~l~~--------------~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 43 VLNML-SIEALTVGQITEKQGV--------------NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHH-HHSCBCHHHHHHHHCS--------------CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHH-HcCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 66667 7789999999998753 23556788999999999996 554455 6999999999
Q ss_pred HHHHHHH
Q psy5605 121 DRIAAQI 127 (152)
Q Consensus 121 D~iA~~i 127 (152)
+.+...+
T Consensus 108 ~~~~~~~ 114 (151)
T 3kp7_A 108 KERKAIM 114 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876554
No 37
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.49 E-value=0.012 Score=41.05 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=50.8
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.|+..|+-.+++.+..|+...| -+.+-+..+++.||+.|||+..++ ++| .||++|+..++
T Consensus 40 ~iL~~l~~~~~~t~~ela~~l~--------------~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (142)
T 2fbi_A 40 RVIRILRQQGEMESYQLANQAC--------------ILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 105 (142)
T ss_dssp HHHHHHHHHCSEEHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------CCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHH
Confidence 3677777788899999988764 245678889999999999987642 344 49999999988
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
++...+
T Consensus 106 ~~~~~~ 111 (142)
T 2fbi_A 106 SMSGDM 111 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765553
No 38
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.49 E-value=0.0059 Score=41.65 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=50.1
Q ss_pred HHHHHHhhHhh-cCC---cchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCc----eeCcch
Q psy5605 45 RCAALARHIYM-RSP---VGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGR----KITSHG 116 (152)
Q Consensus 45 RaASilRkiYl-~g~---vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR----~lT~~G 116 (152)
+...+|-.++- .++ +.+..|+...|- +.+-+-.+|+.||+.||| .++..+| .||++|
T Consensus 13 ~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i--------------~~~tvs~~l~~Le~~Glv-~~~~d~R~~~v~LT~~G 77 (95)
T 2qvo_A 13 KALEILMTIYYESLGGNDVYIQYIASKVNS--------------PHSYVWLIIKKFEEAKMV-ECELEGRTKIIRLTDKG 77 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCEEHHHHHHHSSS--------------CHHHHHHHHHHHHHTTSE-EEEEETTEEEEEECHHH
T ss_pred hHHHHHHHHHHccCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCcCc-cCCCCCCeEEEEEChhH
Confidence 44556666654 345 889999998642 446677788999999999 4444466 799999
Q ss_pred HhhHHHHHHHH
Q psy5605 117 RRDMDRIAAQI 127 (152)
Q Consensus 117 ~~~LD~iA~~i 127 (152)
+..++++...+
T Consensus 78 ~~~~~~~~~~~ 88 (95)
T 2qvo_A 78 QKIAQQIKSII 88 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988876654
No 39
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=96.48 E-value=0.0034 Score=53.26 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=53.4
Q ss_pred HHHHHHh-----hHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCC-CceeCcch-H
Q psy5605 45 RCAALAR-----HIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDG-GRKITSHG-R 117 (152)
Q Consensus 45 RaASilR-----kiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~g-GR~lT~~G-~ 117 (152)
|--.||+ .+--.+|||+..|.+.|+= .-|..-||+-|..||++|++++.-.+ ||.-|.+| +
T Consensus 18 R~~~IL~~i~~~yl~~~~pV~s~~La~~~~l------------~VS~aTIRrDL~~LE~~GlL~r~HgsAgript~~g~r 85 (338)
T 1stz_A 18 RQRKVLYCIVREYIENKKPVSSQRVLEVSNI------------EFSSATIRNDMKKLEYLGYIYQPHTSAGRIPTDKGLR 85 (338)
T ss_dssp HHHHHHHHHHHHHHHHCSCBCHHHHHHHSCC------------CSCHHHHHHHHHHHHHTTSEECCSSCSCBEECHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccHHHHHHHhCC------------CCCHHHHHHHHHHHHHCCCEEEccCcceecCCcccch
Confidence 7778887 4445699999999999842 34778999999999999999987754 68888888 4
Q ss_pred hhHHHHH
Q psy5605 118 RDMDRIA 124 (152)
Q Consensus 118 ~~LD~iA 124 (152)
...|++.
T Consensus 86 ~yvd~l~ 92 (338)
T 1stz_A 86 FYYEEML 92 (338)
T ss_dssp HHHHHHH
T ss_pred hhhhhhh
Confidence 4555543
No 40
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=96.47 E-value=0.021 Score=40.96 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=43.6
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CC----ceeCcchHhhHHH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GG----RKITSHGRRDMDR 122 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gG----R~lT~~G~~~LD~ 122 (152)
||..|+-.+++.+..|....| -+.+-+..+++.||+.|||+..++ ++ -.||++|+..++.
T Consensus 54 iL~~l~~~~~~t~~ela~~l~--------------is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 119 (162)
T 2fa5_A 54 VITILALYPGSSASEVSDRTA--------------MDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYET 119 (162)
T ss_dssp HHHHHHHSTTCCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHH
Confidence 444444456666666666653 345678889999999999997542 23 3599999999988
Q ss_pred HHHHH
Q psy5605 123 IAAQI 127 (152)
Q Consensus 123 iA~~i 127 (152)
+...+
T Consensus 120 ~~~~~ 124 (162)
T 2fa5_A 120 VAPLV 124 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 41
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=96.47 E-value=0.018 Score=42.45 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=45.2
Q ss_pred HHhhHhh-cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 49 LARHIYM-RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 49 ilRkiYl-~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
||..|+- .+++.+..|+...| -+.+-+-.+++.||+.|||++..+ ++| .||++|+..++
T Consensus 58 vL~~L~~~~~~~t~~eLa~~l~--------------i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 58 TLHNIHQLPPDQSQIQLAKAIG--------------IEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHSCSSEEHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHC--------------CCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence 5555555 45677777777653 345677789999999999997653 344 49999999998
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
.+...+
T Consensus 124 ~~~~~~ 129 (166)
T 3deu_A 124 EMEEVI 129 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 42
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=96.46 E-value=0.0062 Score=43.40 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhHhhcCCc-------chhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCc
Q psy5605 42 FYTRCAALARHIYMRSPV-------GVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITS 114 (152)
Q Consensus 42 ~YiRaASilRkiYl~g~v-------GV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~ 114 (152)
.|-..+.-++..-+.|.+ ....|+..|| -|..-+|.+|+.||..|+|+..+..|-.+++
T Consensus 10 ~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~--------------vSr~tvr~al~~L~~~Gli~~~~~~G~~V~~ 75 (113)
T 3tqn_A 10 IYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQ--------------INPLTVSKAYQSLLDDNVIEKRRGLGMLVKA 75 (113)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEETTTEEEECT
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEecCCeEEEeC
Confidence 455666666665555432 6778999884 4778999999999999999999988999998
Q ss_pred chHhhHHHHHH-HHHHHHHHHHHHHHhhcCce
Q psy5605 115 HGRRDMDRIAA-QIRVSKKEAALQALAAQGIT 145 (152)
Q Consensus 115 ~G~~~LD~iA~-~i~~~~~~~~~~~~~~~~~~ 145 (152)
....++..+.. ..+...-+...+.+++.|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 107 (113)
T 3tqn_A 76 GARQRLLTQEKQYFLKKQWPQIKNKLERLGID 107 (113)
T ss_dssp THHHHHHHHHHHHHHHHTSTTSTTTTTTSCCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 87766554332 22333333344445556654
No 43
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=96.46 E-value=0.0056 Score=42.74 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=49.1
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+ .|+..++.|.+..+ .-|.+.+-..|+.||+.|||+...+ ++| .||++|+..++
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~l~-------------gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 94 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRAIP-------------GISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLP 94 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHHST-------------TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHH
T ss_pred HHHHHHH-hCCcCHHHHHHHcc-------------cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHH
Confidence 4677776 88999999998763 1466888999999999999986543 233 79999998876
Q ss_pred HHH
Q psy5605 122 RIA 124 (152)
Q Consensus 122 ~iA 124 (152)
.+.
T Consensus 95 ~l~ 97 (107)
T 2fsw_A 95 IID 97 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 44
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=96.46 E-value=0.0075 Score=42.95 Aligned_cols=67 Identities=22% Similarity=0.306 Sum_probs=44.1
Q ss_pred HHHhhHhhc--CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhh
Q psy5605 48 ALARHIYMR--SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRD 119 (152)
Q Consensus 48 SilRkiYl~--g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~ 119 (152)
.+|..|+-. +++.+..|+...|- +.+-+-.+++.||+.|||++.++ ++| .||++|+..
T Consensus 45 ~vL~~l~~~~~~~~t~~eLa~~l~~--------------~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~ 110 (148)
T 3jw4_A 45 RMIGYIYENQESGIIQKDLAQFFGR--------------RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAAL 110 (148)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHC--------------------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCC--------------ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHH
Confidence 366666666 67788888876532 23456678999999999987653 344 399999999
Q ss_pred HHHHHHHHH
Q psy5605 120 MDRIAAQIR 128 (152)
Q Consensus 120 LD~iA~~i~ 128 (152)
++.+...+.
T Consensus 111 ~~~~~~~~~ 119 (148)
T 3jw4_A 111 VEEFNNIFL 119 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988766543
No 45
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=96.45 E-value=0.017 Score=40.82 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=51.8
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+++.+..|+...|- +.+-+..+++.||+.|||+..++ ++| .||++|+..++
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l~~--------------~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 109 (152)
T 3bj6_A 44 AILEGLSLTPGATAPQLGAALQM--------------KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIIT 109 (152)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHH
Confidence 36777788889999999998853 45678889999999999997653 333 58999999988
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
.+-..+
T Consensus 110 ~~~~~~ 115 (152)
T 3bj6_A 110 AIRADE 115 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765544
No 46
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.45 E-value=0.0095 Score=39.66 Aligned_cols=70 Identities=11% Similarity=0.225 Sum_probs=53.7
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCC----ceeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGG----RKITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gG----R~lT~~G~~~LD 121 (152)
.|+..++-.++..+..|....| -|.+-+-..|+.||+.|+|+... .++ -.||++|+..+.
T Consensus 20 ~iL~~L~~~~~~~~~ela~~l~--------------is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~ 85 (100)
T 1ub9_A 20 GIMIFLLPRRKAPFSQIQKVLD--------------LTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAK 85 (100)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHHhcCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHH
Confidence 4777777788999999999874 35567888899999999998543 223 358999999888
Q ss_pred HHHHHHHHHH
Q psy5605 122 RIAAQIRVSK 131 (152)
Q Consensus 122 ~iA~~i~~~~ 131 (152)
.+...+..-.
T Consensus 86 ~~~~~~~~~~ 95 (100)
T 1ub9_A 86 RFLSSLKAVI 95 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777765443
No 47
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=96.45 E-value=0.015 Score=41.83 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=48.7
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHHH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMDR 122 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD~ 122 (152)
||..|+-.+++.+..|....| -+.+-+..+|+.||+.|||+..++ ++| .||++|+..++.
T Consensus 57 iL~~l~~~~~~t~~ela~~l~--------------is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 122 (162)
T 3cjn_A 57 ALAILSAKDGLPIGTLGIFAV--------------VEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDR 122 (162)
T ss_dssp HHHHHHHSCSEEHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHC--------------CChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 555666667788888887763 345678889999999999997542 343 599999999988
Q ss_pred HHHHH
Q psy5605 123 IAAQI 127 (152)
Q Consensus 123 iA~~i 127 (152)
+....
T Consensus 123 ~~~~~ 127 (162)
T 3cjn_A 123 LWPHM 127 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 48
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=96.43 E-value=0.014 Score=40.44 Aligned_cols=66 Identities=17% Similarity=0.323 Sum_probs=50.2
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+++.+..|....| -+.+-+-.+++.||+.|||+..++ ++| .||++|+..++
T Consensus 42 ~iL~~l~~~~~~t~~ela~~l~--------------~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (140)
T 2nnn_A 42 AALVRLGETGPCPQNQLGRLTA--------------MDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELE 107 (140)
T ss_dssp HHHHHHHHHSSBCHHHHHHHTT--------------CCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHH
Confidence 3667777778888888888764 244677889999999999997542 233 59999999988
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
++...+
T Consensus 108 ~~~~~~ 113 (140)
T 2nnn_A 108 AGLAAA 113 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 49
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.42 E-value=0.026 Score=39.37 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=49.4
Q ss_pred HHhhH-hhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 49 LARHI-YMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 49 ilRki-Yl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
||..| +-.+++.+..|+...| -+.+-+..+++.||+.|||+..++ ++| .||++|+..++
T Consensus 42 iL~~l~~~~~~~t~~~la~~l~--------------~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (146)
T 2fbh_A 42 VLLHLARHRDSPTQRELAQSVG--------------VEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIA 107 (146)
T ss_dssp HHHHHHHCSSCCBHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHhC--------------CChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHH
Confidence 56666 4567888899988874 345678889999999999997653 233 68999999998
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
.+...+
T Consensus 108 ~~~~~~ 113 (146)
T 2fbh_A 108 DIEAIA 113 (146)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 875443
No 50
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=96.40 E-value=0.019 Score=40.58 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=49.8
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CC----ceeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GG----RKITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gG----R~lT~~G~~~LD 121 (152)
.||..|+-.+++.+..|+...| -+.+-+-.+++.||+.|||+..++ ++ -.||++|+..++
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l~--------------~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~ 109 (148)
T 3nrv_A 44 RIISVLSSASDCSVQKISDILG--------------LDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
T ss_dssp HHHHHHHHSSSBCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHH
Confidence 4777788888899999988874 345677889999999999997642 23 469999999998
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
.+-..+
T Consensus 110 ~~~~~~ 115 (148)
T 3nrv_A 110 VASDFA 115 (148)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 876554
No 51
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=96.35 E-value=0.022 Score=39.94 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=51.6
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHHH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMDR 122 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD~ 122 (152)
|+..|+-.+++.+..|+...|- +.+-+-.+++.||+.|||+..++ ++| .||++|+..++.
T Consensus 34 iL~~l~~~~~~t~~~la~~l~~--------------s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 99 (144)
T 1lj9_A 34 YLVRVCENPGIIQEKIAELIKV--------------DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPI 99 (144)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHCcCcCHHHHHHHHCC--------------CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHH
Confidence 6677788899999999998842 45678889999999999987542 344 599999999987
Q ss_pred HHHHH
Q psy5605 123 IAAQI 127 (152)
Q Consensus 123 iA~~i 127 (152)
+...+
T Consensus 100 ~~~~~ 104 (144)
T 1lj9_A 100 IVREN 104 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 52
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.31 E-value=0.012 Score=41.02 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=47.8
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDM 120 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~L 120 (152)
.|+..|+-.+++.+..|+...| -|.+-+..+++.||+.|||+..++ ++| .||++|+..+
T Consensus 35 ~iL~~l~~~~~~~~~ela~~l~--------------is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 35 SILQTLLKDAPLHQLALQERLQ--------------IDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 3777788889999999999874 355778889999999999987653 343 5999999999
No 53
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.29 E-value=0.016 Score=40.52 Aligned_cols=66 Identities=18% Similarity=0.364 Sum_probs=51.3
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+++.+..|+...| -+.+-+..+++.||+.|||+..++ ++| .||++|+..++
T Consensus 37 ~iL~~l~~~~~~~~~~la~~l~--------------~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (145)
T 2a61_A 37 DILQKIYFEGPKRPGELSVLLG--------------VAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 102 (145)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------CCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHH
Confidence 4677777788999999999874 245678889999999999997642 333 69999999998
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
.+...+
T Consensus 103 ~~~~~~ 108 (145)
T 2a61_A 103 KVIERR 108 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765543
No 54
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=96.27 E-value=0.0014 Score=54.83 Aligned_cols=66 Identities=26% Similarity=0.443 Sum_probs=0.0
Q ss_pred HHHHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHH
Q psy5605 45 RCAALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIA 124 (152)
Q Consensus 45 RaASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA 124 (152)
|-..||+.||-.+++++..|+..+|- |..-+|..|+.||+.|+|+... .|=.||++|+..++.+-
T Consensus 21 r~~~iL~~l~~~~~~t~~eLa~~l~v--------------s~~Tv~r~l~~Le~~Glv~~~~-~gi~LT~~G~~~~~~~~ 85 (345)
T 2o0m_A 21 ERFQILRNIYWMQPIGRRSLSETMGI--------------TERVLRTETDVLKQLNLIEPSK-SGMTLTERGLEVYQGLE 85 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEe-cceEEcHHHHHHHHHHH
Confidence 55579999999999999999999853 5578999999999999998555 47899999998776553
Q ss_pred H
Q psy5605 125 A 125 (152)
Q Consensus 125 ~ 125 (152)
.
T Consensus 86 ~ 86 (345)
T 2o0m_A 86 L 86 (345)
T ss_dssp -
T ss_pred H
Confidence 3
No 55
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.27 E-value=0.013 Score=40.96 Aligned_cols=62 Identities=11% Similarity=0.163 Sum_probs=48.8
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CC----ceeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GG----RKITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gG----R~lT~~G~~~LD 121 (152)
.||+.|+ .|+..++.|.+... .-|.+.+-..|+.||+.|||+...+ ++ -.||++|++.++
T Consensus 18 ~IL~~L~-~~~~~~~eLa~~l~-------------~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~ 83 (107)
T 2hzt_A 18 VILXHLT-HGKKRTSELKRLMP-------------NITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEG 83 (107)
T ss_dssp HHHHHHT-TCCBCHHHHHHHCT-------------TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhc-------------CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHH
Confidence 3677776 89999999998751 3567889999999999999986543 23 489999999876
Q ss_pred HH
Q psy5605 122 RI 123 (152)
Q Consensus 122 ~i 123 (152)
.+
T Consensus 84 ~~ 85 (107)
T 2hzt_A 84 IL 85 (107)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 56
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=96.26 E-value=0.01 Score=41.71 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=49.8
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.|+..|+-.+++.+..|+...|- +.+-+..+++.||+.|||+..++ ++| .||++|+..++
T Consensus 41 ~iL~~l~~~~~~~~~ela~~l~~--------------~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (142)
T 2bv6_A 41 LVLTILWDESPVNVKKVVTELAL--------------DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 106 (142)
T ss_dssp HHHHHHHHSSEEEHHHHHHHTTC--------------CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCC--------------ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHH
Confidence 36667777788888888888743 23457789999999999987653 344 57999999998
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
.+...+
T Consensus 107 ~~~~~~ 112 (142)
T 2bv6_A 107 ELSNAS 112 (142)
T ss_dssp HHTTHH
T ss_pred HHHHHH
Confidence 876443
No 57
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=96.26 E-value=0.024 Score=40.44 Aligned_cols=65 Identities=12% Similarity=0.226 Sum_probs=45.7
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHHH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMDR 122 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD~ 122 (152)
||..|+-.+++.+..|....| -+.+-+-.+++.||+.|||+..++ ++| .||++|+..++.
T Consensus 48 iL~~l~~~~~~t~~ela~~l~--------------i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 113 (155)
T 3cdh_A 48 VLACLVDNDAMMITRLAKLSL--------------MEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAES 113 (155)
T ss_dssp HHHHHSSCSCBCHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHH
T ss_pred HHHHHHHCCCcCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHH
Confidence 555555566777777777653 344667789999999999997643 333 599999999988
Q ss_pred HHHHH
Q psy5605 123 IAAQI 127 (152)
Q Consensus 123 iA~~i 127 (152)
+...+
T Consensus 114 ~~~~~ 118 (155)
T 3cdh_A 114 LVASA 118 (155)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 58
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=96.25 E-value=0.0051 Score=42.75 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=42.3
Q ss_pred HHHHhhHhhcC-CcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceec----CCCCceeC
Q psy5605 47 AALARHIYMRS-PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKS----DDGGRKIT 113 (152)
Q Consensus 47 ASilRkiYl~g-~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~----~~gGR~lT 113 (152)
..|+..++-.| ++.+..|+..+| -|.+-+|.+|+.|++.|+|+.. +.+|+.+.
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lg--------------vs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~ 78 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLN--------------IKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIY 78 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTT--------------SCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEEecccCCCceEEE
Confidence 35787787777 899999999984 4678899999999999999987 66676555
No 59
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.22 E-value=0.022 Score=37.84 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=50.5
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCC---ceeCcchHhhHHHHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGG---RKITSHGRRDMDRIA 124 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gG---R~lT~~G~~~LD~iA 124 (152)
.|+..|.-.+++.+..|....| -|.+-+...|+.||+.|+|+..+++. -.||++|...+-...
T Consensus 28 ~il~~l~~~~~~s~~ela~~l~--------------is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l 93 (99)
T 3cuo_A 28 LILCMLSGSPGTSAGELTRITG--------------LSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATL 93 (99)
T ss_dssp HHHHHHTTCCSEEHHHHHHHHC--------------CCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHH
Confidence 4777676667999999999985 35678999999999999999887532 268999877665554
Q ss_pred HHH
Q psy5605 125 AQI 127 (152)
Q Consensus 125 ~~i 127 (152)
.++
T Consensus 94 ~~~ 96 (99)
T 3cuo_A 94 KNV 96 (99)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 60
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=96.22 E-value=0.013 Score=41.85 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=44.6
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHHH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMDR 122 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD~ 122 (152)
||..|+-.+++.+..|....| -+.+-+..+|+.||+.|||+..++ ++| .||++|+..++.
T Consensus 52 iL~~l~~~~~~t~~ela~~l~--------------~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGERLY--------------LDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHHHSCSEEHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred HHHHHHhCCCcCHHHHHHHhC--------------CCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHH
Confidence 455555566677777776653 355678889999999999997653 333 589999998877
Q ss_pred HHHH
Q psy5605 123 IAAQ 126 (152)
Q Consensus 123 iA~~ 126 (152)
+...
T Consensus 118 ~~~~ 121 (153)
T 2pex_A 118 AGAV 121 (153)
T ss_dssp STTH
T ss_pred HHHH
Confidence 6543
No 61
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=96.20 E-value=0.022 Score=41.53 Aligned_cols=65 Identities=8% Similarity=0.164 Sum_probs=46.2
Q ss_pred HHhhHhhc--CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhH
Q psy5605 49 LARHIYMR--SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDM 120 (152)
Q Consensus 49 ilRkiYl~--g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~L 120 (152)
||..|+-. +++.+..|....|- +.+-+-.+++.||+.|||++.++ ++| .||++|+..+
T Consensus 51 vL~~l~~~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 51 TLRLLRSVHPEGMATLQIADRLIS--------------RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHC-----------------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCC--------------ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHH
Confidence 55566664 47777777777632 33567789999999999997643 344 5999999999
Q ss_pred HHHHHHH
Q psy5605 121 DRIAAQI 127 (152)
Q Consensus 121 D~iA~~i 127 (152)
+.+...+
T Consensus 117 ~~~~~~~ 123 (168)
T 3u2r_A 117 KDLEEPV 123 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876643
No 62
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=96.19 E-value=0.051 Score=39.81 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=46.9
Q ss_pred HHHHHHHHhhHhhcCC------c-chhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcc
Q psy5605 43 YTRCAALARHIYMRSP------V-GVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSH 115 (152)
Q Consensus 43 YiRaASilRkiYl~g~------v-GV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~ 115 (152)
|-+.+.-+|..-+.|. + ....|+..|| -|..-+|.+|+.||..|+|+..+..|-.+++.
T Consensus 6 ~~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~g--------------vSr~tVr~Al~~L~~~Gli~~~~g~G~~V~~~ 71 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHR--------------INPATARNGLTLLVEAGILYKKRGIGMFVSAQ 71 (129)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTT--------------CCHHHHHHHHHHHHTTTSEEEETTTEEEECTT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCcEEEecCCEEEEecC
Confidence 3444554554444432 2 5677888874 47899999999999999999999889999987
Q ss_pred hHhhH
Q psy5605 116 GRRDM 120 (152)
Q Consensus 116 G~~~L 120 (152)
...++
T Consensus 72 ~~~~~ 76 (129)
T 2ek5_A 72 APALI 76 (129)
T ss_dssp HHHHH
T ss_pred chHhh
Confidence 66554
No 63
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=96.13 E-value=0.03 Score=39.84 Aligned_cols=65 Identities=22% Similarity=0.245 Sum_probs=43.4
Q ss_pred HHhhHhhcC-CcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 49 LARHIYMRS-PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 49 ilRkiYl~g-~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
||..|+-.+ ++.+..|....| -+.+-+-.+++.||+.|||+..++ ++| .||++|+..++
T Consensus 44 vL~~l~~~~~~~t~~eLa~~l~--------------i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 44 VLVLACEQAEGVNQRGVAATMG--------------LDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHHHSTTCCCSHHHHHHHT--------------CCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHC--------------CCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHH
Confidence 454555443 566777776654 245667778999999999997653 343 59999999999
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
.+...+
T Consensus 110 ~~~~~~ 115 (150)
T 3fm5_A 110 DAKARV 115 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 64
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.13 E-value=0.019 Score=40.75 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=51.6
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+++.+..|+...| -+.+-+..+++.||+.|||+..++ ++| .||++|+..++
T Consensus 41 ~iL~~l~~~~~~t~~ela~~l~--------------~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (155)
T 1s3j_A 41 FVLASLKKHGSLKVSEIAERME--------------VKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 106 (155)
T ss_dssp HHHHHHHHHSEEEHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHH
Confidence 4677777788999999999874 245678889999999999987643 333 69999999998
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
.+...+
T Consensus 107 ~~~~~~ 112 (155)
T 1s3j_A 107 EVLAGR 112 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 866554
No 65
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=96.08 E-value=0.014 Score=45.70 Aligned_cols=63 Identities=13% Similarity=0.249 Sum_probs=51.4
Q ss_pred HhhHhh----cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHH
Q psy5605 50 ARHIYM----RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAA 125 (152)
Q Consensus 50 lRkiYl----~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA~ 125 (152)
|+.||. .+++.+..|+...| -|.+-+..+|+.||+.|||+..++++=.||++|++...++..
T Consensus 8 L~~I~~l~~~~~~~~~~~lA~~l~--------------vs~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~~~~ 73 (214)
T 3hrs_A 8 LKCLYELGTRHNKITNKEIAQLMQ--------------VSPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDLYR 73 (214)
T ss_dssp HHHHHHTTSSCSCCCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHC--------------CChhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHHHHH
Confidence 344553 46888999999874 345778899999999999999987788999999999888776
Q ss_pred H
Q psy5605 126 Q 126 (152)
Q Consensus 126 ~ 126 (152)
.
T Consensus 74 ~ 74 (214)
T 3hrs_A 74 K 74 (214)
T ss_dssp H
T ss_pred H
Confidence 3
No 66
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=96.06 E-value=0.022 Score=41.45 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhHhhcCC------c-chhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCc
Q psy5605 42 FYTRCAALARHIYMRSP------V-GVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITS 114 (152)
Q Consensus 42 ~YiRaASilRkiYl~g~------v-GV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~ 114 (152)
.|...+.-+|..=+.|- + ....|+..|| -|..-+|.+|+.||..|||+..+..|-.+++
T Consensus 15 lY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~g--------------VSr~tVReAl~~L~~eGlv~~~~g~G~~V~~ 80 (134)
T 4ham_A 15 IYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIG--------------VNPNTVSKAYQELERQEVIITVKGKGTFIAN 80 (134)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHC--------------CCHHHHHHHHHHHHHCCcEEEEcCcEEEEeC
Confidence 57777777777666542 2 5567888884 5789999999999999999999977877776
Q ss_pred ch
Q psy5605 115 HG 116 (152)
Q Consensus 115 ~G 116 (152)
..
T Consensus 81 ~~ 82 (134)
T 4ham_A 81 QT 82 (134)
T ss_dssp CS
T ss_pred Cc
Confidence 44
No 67
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=96.06 E-value=0.012 Score=41.52 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=47.2
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc-----eeCcchHhhHH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR-----KITSHGRRDMD 121 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR-----~lT~~G~~~LD 121 (152)
||.-|. .+|.--..+.+.... +..-|.+.+-.+|+.||+.|||+.... +|| .||++|+..++
T Consensus 14 IL~~L~-~~~~~gyel~~~l~~----------~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~ 82 (108)
T 3l7w_A 14 ILAIVS-KHDSYGYDISQTIKL----------IASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLV 82 (108)
T ss_dssp HHHHHH-HSCEEHHHHHHHHTT----------TCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHH
T ss_pred HHHHHH-cCCCcHHHHHHHHHH----------HhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHH
Confidence 454444 355444455555432 234567889999999999999986542 454 59999999999
Q ss_pred HHHHHHH
Q psy5605 122 RIAAQIR 128 (152)
Q Consensus 122 ~iA~~i~ 128 (152)
+......
T Consensus 83 ~~~~~~~ 89 (108)
T 3l7w_A 83 YLTKEWS 89 (108)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876653
No 68
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.93 E-value=0.016 Score=40.76 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=49.1
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CC----ceeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GG----RKITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gG----R~lT~~G~~~LD 121 (152)
.||..|+ .|+..++.|.+... .-+.+.+-..|+.||+.|||+...+ ++ -.||++|+..++
T Consensus 26 ~IL~~L~-~~~~~~~eLa~~l~-------------~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~ 91 (112)
T 1z7u_A 26 SLMDELF-QGTKRNGELMRALD-------------GITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYD 91 (112)
T ss_dssp HHHHHHH-HSCBCHHHHHHHST-------------TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhc-------------cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHH
Confidence 4777776 68999999999861 2466888999999999999986653 23 378999998877
Q ss_pred HHH
Q psy5605 122 RIA 124 (152)
Q Consensus 122 ~iA 124 (152)
.+.
T Consensus 92 ~~~ 94 (112)
T 1z7u_A 92 ALS 94 (112)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 69
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=95.77 E-value=0.047 Score=41.12 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=51.4
Q ss_pred HHHhhHhh--cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCCc----eeCcchHhh
Q psy5605 48 ALARHIYM--RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGGR----KITSHGRRD 119 (152)
Q Consensus 48 SilRkiYl--~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gGR----~lT~~G~~~ 119 (152)
.||..|+- .+++.++.|+...| -+.+-+-.+++.||+.|||+..+ ..+| .||++|+..
T Consensus 45 ~vL~~L~~~~~~~~t~~eLa~~l~--------------is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~ 110 (189)
T 3nqo_A 45 MTILSILHLPEEETTLNNIARKMG--------------TSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKV 110 (189)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHH
Confidence 46767776 56899999999874 23466778899999999998754 3454 599999999
Q ss_pred HHHHHHHHH
Q psy5605 120 MDRIAAQIR 128 (152)
Q Consensus 120 LD~iA~~i~ 128 (152)
++.+.....
T Consensus 111 ~~~~~~~~~ 119 (189)
T 3nqo_A 111 MVTCSRTGI 119 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998776543
No 70
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.75 E-value=0.042 Score=38.66 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=50.2
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.++ .+..|+...|- +.+-+-.+++.||+.|||+..++ ++| .||++|+..++
T Consensus 41 ~iL~~l~~~~~-~~~~la~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (144)
T 3f3x_A 41 SILKATSEEPR-SMVYLANRYFV--------------TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLL 105 (144)
T ss_dssp HHHHHHHHSCE-EHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHCC--------------ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHH
Confidence 36777777777 88999988742 44567789999999999997653 233 59999999998
Q ss_pred HHHHHHH
Q psy5605 122 RIAAQIR 128 (152)
Q Consensus 122 ~iA~~i~ 128 (152)
.+.....
T Consensus 106 ~~~~~~~ 112 (144)
T 3f3x_A 106 EANEVLR 112 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765543
No 71
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.71 E-value=0.025 Score=42.12 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=50.1
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||+.++ .|+...+.|++.-. .-|.+.+-..|+.||+.|||+.... ..| .||++|++.+.
T Consensus 30 ~IL~~L~-~g~~rf~eL~~~l~-------------gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 30 ILFYHMI-DGKKRFNEFRRICP-------------SITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp HHHHHHT-TSCBCHHHHHHHCT-------------TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred HHHHHHh-cCCcCHHHHHHHhc-------------ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHH
Confidence 4677776 88999999988752 2567899999999999999997642 233 69999999887
Q ss_pred HHHH
Q psy5605 122 RIAA 125 (152)
Q Consensus 122 ~iA~ 125 (152)
.+..
T Consensus 96 ~l~~ 99 (131)
T 4a5n_A 96 IVLQ 99 (131)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
No 72
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=95.67 E-value=0.029 Score=41.54 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=49.4
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCC-----CceeCcchHhhHHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDG-----GRKITSHGRRDMDR 122 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~g-----GR~lT~~G~~~LD~ 122 (152)
.||+.++ .|+..++.|.+..| -|.+.+-..|+.||+.|||++.+.. .-.||++|+..+..
T Consensus 28 ~IL~~L~-~g~~~~~eLa~~lg--------------is~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~~ 92 (146)
T 2f2e_A 28 LIVRDAF-EGLTRFGEFQKSLG--------------LAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPL 92 (146)
T ss_dssp HHHHHHH-TTCCSHHHHHHHHC--------------CCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhC--------------CCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHHH
Confidence 3777775 78999999998863 4678899999999999999976632 34799999988765
Q ss_pred H
Q psy5605 123 I 123 (152)
Q Consensus 123 i 123 (152)
+
T Consensus 93 l 93 (146)
T 2f2e_A 93 L 93 (146)
T ss_dssp H
T ss_pred H
Confidence 5
No 73
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=95.61 E-value=0.0093 Score=41.50 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=51.0
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCc----eeCcchHhhHHHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGR----KITSHGRRDMDRI 123 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR----~lT~~G~~~LD~i 123 (152)
.||..|+-.+|+.+..|....|-. .+ -+.+-+-.+|+.||+.|||+..+++.| .||++|+...+.+
T Consensus 14 ~vL~~l~~~~~~t~~ela~~l~~~--~~--------~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~ 83 (123)
T 1okr_A 14 EVMNIIWMKKYASANNIIEEIQMQ--KD--------WSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTS 83 (123)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHHHH--CC--------CCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHhcc--CC--------CcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHH
Confidence 366677778999999999998531 11 245778899999999999998876332 4899999887665
Q ss_pred H
Q psy5605 124 A 124 (152)
Q Consensus 124 A 124 (152)
.
T Consensus 84 ~ 84 (123)
T 1okr_A 84 K 84 (123)
T ss_dssp H
T ss_pred H
Confidence 3
No 74
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=95.60 E-value=0.029 Score=40.73 Aligned_cols=64 Identities=13% Similarity=0.216 Sum_probs=45.2
Q ss_pred HHhhHhhc--CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhH
Q psy5605 49 LARHIYMR--SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDM 120 (152)
Q Consensus 49 ilRkiYl~--g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~L 120 (152)
+|..||.. |++.++.|+...|- +.+-+=.++..||+.|||+..++ .+| .||++|+..+
T Consensus 40 vL~~L~~~~~~~~t~~eLa~~l~~--------------~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 40 ALVLLTFSKSGELPMSKIGERLMV--------------HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHTSGGGEEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 55566653 56788888887643 33556668999999999987653 354 4899999999
Q ss_pred HHHHHH
Q psy5605 121 DRIAAQ 126 (152)
Q Consensus 121 D~iA~~ 126 (152)
+++...
T Consensus 106 ~~~~~~ 111 (147)
T 4b8x_A 106 EAATRD 111 (147)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887554
No 75
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.53 E-value=0.038 Score=39.46 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=46.5
Q ss_pred HHHhhHh-hcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhH
Q psy5605 48 ALARHIY-MRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDM 120 (152)
Q Consensus 48 SilRkiY-l~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~L 120 (152)
.||..|+ -.+++.+..|....|- +.+-+-.+++.||+.|||++.++ ++| .||++|+..+
T Consensus 51 ~iL~~L~~~~~~~~~~ela~~l~i--------------~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 51 DAMAQLARNPDGLSMGKLSGALKV--------------TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHCSS--------------CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCC--------------ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 3666674 4678888888888642 22445668899999999997653 343 5999999999
Q ss_pred HHHHHHH
Q psy5605 121 DRIAAQI 127 (152)
Q Consensus 121 D~iA~~i 127 (152)
+.+...+
T Consensus 117 ~~~~~~~ 123 (160)
T 3boq_A 117 KQASEAH 123 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876554
No 76
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=95.44 E-value=0.021 Score=39.74 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=49.2
Q ss_pred HHHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchh-HHHHHHHHHHhCCcceecCCCCc---eeCcchHhhH
Q psy5605 46 CAALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGS-VARKALQALEQVNIIEKSDDGGR---KITSHGRRDM 120 (152)
Q Consensus 46 aASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~-iiR~~LQqLE~~glVek~~~gGR---~lT~~G~~~L 120 (152)
.-.|+.-|.-+||..+..|++..|= +.. -+|..|+.||+.|+|++.. .|| .||++|+..|
T Consensus 13 ~~~IL~~Lk~~g~~ta~eiA~~Lgi--------------t~~~aVr~hL~~Le~eGlV~~~~-~gRP~w~LT~~g~~~~ 76 (79)
T 1xmk_A 13 KEKICDYLFNVSDSSALNLAKNIGL--------------TKARDINAVLIDMERQGDVYRQG-TTPPIWHLTDKKRERM 76 (79)
T ss_dssp HHHHHHHHHHTCCEEHHHHHHHHCG--------------GGHHHHHHHHHHHHHTTSEEEEC-SSSCEEEECHHHHTTT
T ss_pred HHHHHHHHHHcCCcCHHHHHHHcCC--------------CcHHHHHHHHHHHHHCCCEEecC-CCCCCeEeCHhHHhHh
Confidence 3467777888999999999999863 345 7999999999999999664 466 7899998765
No 77
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=95.41 E-value=0.036 Score=44.64 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=45.4
Q ss_pred cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHH
Q psy5605 56 RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIA 124 (152)
Q Consensus 56 ~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA 124 (152)
.+|+|...|+...| =|-..+|..++-|++.|||+..+ +|=.||++|++...++-
T Consensus 28 ~~~V~~~~LA~~Lg--------------vS~~SV~~~lkkL~e~GLV~~~~-~Gv~LTe~G~~~A~~i~ 81 (200)
T 2p8t_A 28 KEPLGRKQISERLE--------------LGEGSVRTLLRKLSHLDIIRSKQ-RGHFLTLKGKEIRDKLL 81 (200)
T ss_dssp TSCBCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEC---CEEECHHHHHHHHHHH
T ss_pred cCCccHHHHHHHhC--------------CCHHHHHHHHHHHHHCCCEEEeC-CCeEECHHHHHHHHHHH
Confidence 58999999999986 34578999999999999999888 89999999998766553
No 78
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.31 E-value=0.028 Score=39.77 Aligned_cols=63 Identities=8% Similarity=0.154 Sum_probs=49.8
Q ss_pred HHHhhHhhcCCcc--hhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCceeCcchHhhHHHH
Q psy5605 48 ALARHIYMRSPVG--VKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGRKITSHGRRDMDRI 123 (152)
Q Consensus 48 SilRkiYl~g~vG--V~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR~lT~~G~~~LD~i 123 (152)
.|++.+. .|+.. ++.|.+... .-|.+.+-..|+.||+.|||++... .--.||++|++.++.+
T Consensus 31 ~IL~~L~-~g~~~~~~~eL~~~l~-------------gis~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~~~l 96 (111)
T 3df8_A 31 LIISVLG-NGSTRQNFNDIRSSIP-------------GISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSL 96 (111)
T ss_dssp HHHHHHT-SSSSCBCHHHHHHTST-------------TCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHH
T ss_pred HHHHHHh-cCCCCCCHHHHHHHcc-------------CCCHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHHHHH
Confidence 4777777 88888 999998751 2467889999999999999998753 2458999999987765
Q ss_pred H
Q psy5605 124 A 124 (152)
Q Consensus 124 A 124 (152)
.
T Consensus 97 ~ 97 (111)
T 3df8_A 97 M 97 (111)
T ss_dssp H
T ss_pred H
Confidence 4
No 79
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=95.31 E-value=0.049 Score=39.06 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=36.0
Q ss_pred CCCchhHHHHHHHHHHhCCcceecC---CCCc-----eeCcchHhhHHHHHHHHH
Q psy5605 82 CRSSGSVARKALQALEQVNIIEKSD---DGGR-----KITSHGRRDMDRIAAQIR 128 (152)
Q Consensus 82 ~~asg~iiR~~LQqLE~~glVek~~---~gGR-----~lT~~G~~~LD~iA~~i~ 128 (152)
..-+.+.+-.+|+.||+.|||+... .+|| .||++|++.++.......
T Consensus 43 ~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~~ 97 (116)
T 3f8b_A 43 MELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFESWS 97 (116)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHHHHH
Confidence 3556788999999999999998652 2342 699999999998776543
No 80
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=95.27 E-value=0.036 Score=39.95 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=51.9
Q ss_pred HHHHHhhHhhcCCcchhhHHH-HhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHH
Q psy5605 46 CAALARHIYMRSPVGVKTVTK-IFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIA 124 (152)
Q Consensus 46 aASilRkiYl~g~vGV~~L~~-~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA 124 (152)
-.|||+.|+-+++..++.|.. .-+ =..+.+=.-++-||+.|||+.+.+ +=.||++|+..+...+
T Consensus 18 QfsiL~~L~~~~~~t~~~Lae~~l~--------------~drstvsrnl~~L~r~GlVe~~~~-Dl~LT~~G~~~l~~a~ 82 (95)
T 1bja_A 18 TATILITIAKKDFITAAEVREVHPD--------------LGNAVVNSNIGVLIKKGLVEKSGD-GLIITGEAQDIISNAA 82 (95)
T ss_dssp HHHHHHHHHHSTTBCHHHHHHTCTT--------------SCHHHHHHHHHHHHTTTSEEEETT-EEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHhc--------------ccHHHHHHHHHHHHHCCCeecCCC-CeeeCHhHHHHHHHHH
Confidence 368999999999999999998 422 234555566799999999994443 5679999999998876
Q ss_pred HHH
Q psy5605 125 AQI 127 (152)
Q Consensus 125 ~~i 127 (152)
.-=
T Consensus 83 ~~W 85 (95)
T 1bja_A 83 TLY 85 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 81
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=95.27 E-value=0.0057 Score=44.56 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=35.5
Q ss_pred CCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHH
Q psy5605 83 RSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIA 124 (152)
Q Consensus 83 ~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA 124 (152)
.-|..-+|.+|+.||..|+|+..+..|-.+++....++..+.
T Consensus 46 ~vSr~tvr~Al~~L~~~G~i~~~~~~G~~V~~~~~~~~~~~~ 87 (126)
T 3ic7_A 46 EVNANTVMRSYEYLQSQEVIYNKRGIGFFVASGAKMLIHSLR 87 (126)
T ss_dssp -CCSGGGHHHHHHHHTTTSEEEETTTEEEECTTHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCcEEEEcCCccEEccCcHHHHHHHH
Confidence 357789999999999999999999889999998876666554
No 82
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=95.24 E-value=0.029 Score=38.09 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=45.3
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHh
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRR 118 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~ 118 (152)
.|++.| .+++.++.|....| -|.+-+++.|+.||+.|+|+... +.-.||+.|+.
T Consensus 35 ~Il~~L--~~~~~~~eLa~~l~--------------is~~tv~~~L~~L~~~Glv~~~~-g~y~l~~~g~~ 88 (96)
T 1y0u_A 35 KILRML--DKGRSEEEIMQTLS--------------LSKKQLDYHLKVLEAGFCIERVG-ERWVVTDAGKI 88 (96)
T ss_dssp HHHHHH--HTTCCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEET-TEEEECTTTCC
T ss_pred HHHHHH--cCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEEC-CEEEECCCchH
Confidence 477777 89999999999883 35678999999999999999877 67789999864
No 83
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=95.17 E-value=0.2 Score=36.52 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=44.8
Q ss_pred HHhhHhhcCC-cchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q psy5605 49 LARHIYMRSP-VGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGGR----KITSHGRRDMD 121 (152)
Q Consensus 49 ilRkiYl~g~-vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gGR----~lT~~G~~~LD 121 (152)
+|..|+-.++ ...+.|+...| -+.+-+=.+++.||+.|||+..+ .++| .||++|+..++
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~--------------~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIG--------------IEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHC--------------cCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHH
Confidence 5556664443 44466777653 23455667899999999998654 3455 48999999998
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
++...+
T Consensus 102 ~~~~~~ 107 (151)
T 4aik_A 102 QVDGVI 107 (151)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 84
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=95.16 E-value=0.018 Score=40.55 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=48.7
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+++.+..|+...| -+.+-+..+++.||+.|||+..++ ++| .||++|+..++
T Consensus 44 ~iL~~l~~~~~~~~~~la~~l~--------------~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 44 LALLLLWEHETLTVKKMGEQLY--------------LDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHSEEEHHHHHHTTT--------------CCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHCCCCCHHHHHHHHC--------------CCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 3566677677888888887653 345778889999999999997653 344 58999999988
Q ss_pred HHHHH
Q psy5605 122 RIAAQ 126 (152)
Q Consensus 122 ~iA~~ 126 (152)
.+...
T Consensus 110 ~~~~~ 114 (147)
T 1z91_A 110 KAVDI 114 (147)
T ss_dssp GTTTH
T ss_pred HHHHH
Confidence 76443
No 85
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=95.12 E-value=0.053 Score=38.89 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=47.7
Q ss_pred HHHhhHhhc------CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC-CCc---eeCcchH
Q psy5605 48 ALARHIYMR------SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD-GGR---KITSHGR 117 (152)
Q Consensus 48 SilRkiYl~------g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~-gGR---~lT~~G~ 117 (152)
++++.|... +++-...|++.- .=+.+-+++.|..||+.|||+.... .|| .||++|+
T Consensus 20 ~vL~~L~~~~~~~~g~~~s~~eLa~~l--------------~l~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~ 85 (96)
T 2obp_A 20 EVLLVLREAGIENGATPWSLPKIAKRA--------------QLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGA 85 (96)
T ss_dssp HHHHHHHHHTSSTTCCCCBHHHHHHHH--------------TCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHH
T ss_pred HHHHHHHHHHhhCCCCCcCHHHHHHHh--------------CCchhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHH
Confidence 566666655 667777777764 4567899999999999999996543 355 6999999
Q ss_pred hhHHHH
Q psy5605 118 RDMDRI 123 (152)
Q Consensus 118 ~~LD~i 123 (152)
..+++.
T Consensus 86 ~~l~~~ 91 (96)
T 2obp_A 86 ALAAQL 91 (96)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 86
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=95.00 E-value=0.076 Score=40.93 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=49.9
Q ss_pred HHHHHHHHhhHhhcCC------cchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcch
Q psy5605 43 YTRCAALARHIYMRSP------VGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHG 116 (152)
Q Consensus 43 YiRaASilRkiYl~g~------vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G 116 (152)
+-.++.-+|.--+.|- +....|+..|| -|...+|.+|+.||..|||+..+..|-.+++-.
T Consensus 18 ~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lg--------------VSRtpVREAl~~L~~eGlv~~~~~~G~~V~~~~ 83 (222)
T 3ihu_A 18 SDTVFFGIMSGLELGTFVPGQRLVETDLVAHFG--------------VGRNSVREALQRLAAEGIVDLQRHRGAVIRRLS 83 (222)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEECSTTCEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEEecCCCeEEecCC
Confidence 3344445555444442 44677888884 578999999999999999999998898888877
Q ss_pred HhhHHHH
Q psy5605 117 RRDMDRI 123 (152)
Q Consensus 117 ~~~LD~i 123 (152)
..++..+
T Consensus 84 ~~~~~e~ 90 (222)
T 3ihu_A 84 LQETLDV 90 (222)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 87
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=94.99 E-value=0.096 Score=37.79 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=53.1
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC---CCC-----ceeCcchHhhH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD---DGG-----RKITSHGRRDM 120 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~---~gG-----R~lT~~G~~~L 120 (152)
||.-|. .+|.---.|.+.... . .+..-|.+.+-.+|+.||+.|||+... .+| -.||++|+..|
T Consensus 18 IL~lL~-~~p~~Gyei~~~l~~---~-----g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l 88 (116)
T 3hhh_A 18 VLAIIQ-RKETYGYEITKILND---Q-----GFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAEL 88 (116)
T ss_dssp HHHHHH-HSCBCHHHHHHHHHT---T-----SCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHH
T ss_pred HHHHHh-cCCCCHHHHHHHHHH---c-----CCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHH
Confidence 443333 455433455555533 2 234567789999999999999998653 234 35999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCc
Q psy5605 121 DRIAAQIRVSKKEAALQALAAQGI 144 (152)
Q Consensus 121 D~iA~~i~~~~~~~~~~~~~~~~~ 144 (152)
+....+.. .+.+...+.|...|+
T Consensus 89 ~~~~~~~~-~~~~~i~~il~~~~~ 111 (116)
T 3hhh_A 89 ADFWQRWT-LLSKQVNKMKKNGGI 111 (116)
T ss_dssp HHHHHHHH-HHHHHHHHHHHC---
T ss_pred HHHHHHHH-HHHHHHHHHHCcCCc
Confidence 99876654 444444455554444
No 88
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=94.94 E-value=0.024 Score=40.21 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=43.5
Q ss_pred chhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCCceeCcchHhhHHHHH
Q psy5605 60 GVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGGRKITSHGRRDMDRIA 124 (152)
Q Consensus 60 GV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gGR~lT~~G~~~LD~iA 124 (152)
.+..|+..|| -|..-+|.+|+.||+.|+|+..+ ..|-.+++....++..+.
T Consensus 45 s~~eLa~~lg--------------VSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~~~~~~~~~~~ 97 (102)
T 2b0l_A 45 VASKIADRVG--------------ITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELE 97 (102)
T ss_dssp CHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCHHHHHHHH
T ss_pred CHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEecCCHHHHHHHH
Confidence 7888888884 47899999999999999999988 458999998888877654
No 89
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.91 E-value=0.061 Score=41.52 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=49.5
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CCc----eeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GGR----KITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gGR----~lT~~G~~~LD 121 (152)
.||..|+-.+++.+..|+...|- +.+-+-.+++.||+.|||+..++ ++| .||++|+..++
T Consensus 52 ~iL~~L~~~~~~t~~eLa~~l~i--------------~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (207)
T 2fxa_A 52 HILWIAYQLNGASISEIAKFGVM--------------HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 117 (207)
T ss_dssp HHHHHHHHHTSEEHHHHHHHTTC--------------CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHH
Confidence 36677777888999999988743 34666778999999999997653 344 59999999998
Q ss_pred HHHHH
Q psy5605 122 RIAAQ 126 (152)
Q Consensus 122 ~iA~~ 126 (152)
++...
T Consensus 118 ~~~~~ 122 (207)
T 2fxa_A 118 SLLEE 122 (207)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87644
No 90
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=94.87 E-value=0.09 Score=37.44 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=46.0
Q ss_pred HHHHHHhhHhhc---CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCCceeCcchHh
Q psy5605 45 RCAALARHIYMR---SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGGRKITSHGRR 118 (152)
Q Consensus 45 RaASilRkiYl~---g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gGR~lT~~G~~ 118 (152)
+|..++..|..+ +++.+..|+..+| -|.+.+|++|++|+++|||+... .||..|+.....
T Consensus 10 ~al~iL~~la~~~~~~~~s~~ela~~~~--------------i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~~ 74 (129)
T 2y75_A 10 YGLTIMIELAKKHGEGPTSLKSIAQTNN--------------LSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDA 74 (129)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHTT--------------SCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGG
T ss_pred HHHHHHHHHHhCCCCCcCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHHH
Confidence 456677777664 5789999999873 46689999999999999999774 368888876543
No 91
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=94.82 E-value=0.12 Score=37.81 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=48.4
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CC----ceeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GG----RKITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gG----R~lT~~G~~~LD 121 (152)
.||..|+ .|+..++.|.+..+ .-|.+.+-..|+.||+.|||+...+ .+ -.||++|+..+.
T Consensus 39 ~IL~~L~-~g~~~~~eLa~~l~-------------gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 104 (131)
T 1yyv_A 39 LILVALR-DGTHRFSDLRRXMG-------------GVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSD 104 (131)
T ss_dssp HHHHHGG-GCCEEHHHHHHHST-------------TCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHhc-------------cCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHH
Confidence 3666676 78999999998762 1467889999999999999986543 23 369999998776
Q ss_pred HHH
Q psy5605 122 RIA 124 (152)
Q Consensus 122 ~iA 124 (152)
.+.
T Consensus 105 ~l~ 107 (131)
T 1yyv_A 105 XVA 107 (131)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 92
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=94.68 E-value=0.027 Score=42.17 Aligned_cols=63 Identities=24% Similarity=0.139 Sum_probs=38.2
Q ss_pred CCCchhHHHHHHHHHHhCCcceecC----CCC-----ceeCcchHhhHHHHHHHHHHHHHHHHHHHHhhcCcee
Q psy5605 82 CRSSGSVARKALQALEQVNIIEKSD----DGG-----RKITSHGRRDMDRIAAQIRVSKKEAALQALAAQGITV 146 (152)
Q Consensus 82 ~~asg~iiR~~LQqLE~~glVek~~----~gG-----R~lT~~G~~~LD~iA~~i~~~~~~~~~~~~~~~~~~~ 146 (152)
..-|.+.+-.+|+.||+.|||+... .+| -.||++|++.+.....+... +.+. -++..+|.|.|
T Consensus 64 ~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~~~~-l~~~-~~~~~~~~~~~ 135 (138)
T 2e1n_A 64 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLWER-YLSS-SAATDRQLIPV 135 (138)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHHHHHH-HC--------------
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHHHHHHHH-HHhc-chhhhhccccc
Confidence 3567789999999999999998642 134 37999999999998766532 3222 55666666654
No 93
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=94.64 E-value=0.11 Score=37.55 Aligned_cols=60 Identities=18% Similarity=0.265 Sum_probs=43.7
Q ss_pred HHHhhHhh-cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCc-----eeCcchH
Q psy5605 48 ALARHIYM-RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGR-----KITSHGR 117 (152)
Q Consensus 48 SilRkiYl-~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR-----~lT~~G~ 117 (152)
.||..|+- .+|+.+..|....+.. +++ +.+-+-.+|+.||+.|||+..+++.+ .||++|.
T Consensus 13 ~vL~~L~~~~~~~t~~el~~~l~~~--~~~--------~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 13 AVMDHLWSRTEPQTVRQVHEALSAR--RDL--------AYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDEL 78 (138)
T ss_dssp HHHHHHHTCSSCEEHHHHHHHHTTT--CCC--------CHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHhcc--CCC--------CHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHHHH
Confidence 37777887 5999999999998643 222 34678889999999999998876322 2677774
No 94
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=94.59 E-value=0.47 Score=32.73 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=48.6
Q ss_pred HHHhhHhh-cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CC--CceeCcchHhhHHH
Q psy5605 48 ALARHIYM-RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DG--GRKITSHGRRDMDR 122 (152)
Q Consensus 48 SilRkiYl-~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~g--GR~lT~~G~~~LD~ 122 (152)
.++.-+++ .+|+.+..|+...|- +.+-+..+|+.||+.|||+..+ .+ ...++..|...+..
T Consensus 30 ~il~~L~~~~~~~t~~ela~~l~~--------------~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~~~~~~~~~ 95 (152)
T 1ku9_A 30 AVYAILYLSDKPLTISDIMEELKI--------------SKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKD 95 (152)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEecCCCceEEEeecchHHHHHH
Confidence 45666665 689999999999853 4567888999999999999863 22 34688888777766
Q ss_pred HHHH
Q psy5605 123 IAAQ 126 (152)
Q Consensus 123 iA~~ 126 (152)
+..+
T Consensus 96 ~~~~ 99 (152)
T 1ku9_A 96 IAKR 99 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 95
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=94.50 E-value=0.065 Score=40.22 Aligned_cols=67 Identities=15% Similarity=0.290 Sum_probs=52.5
Q ss_pred HHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCC----ceeCcchHhhHHH
Q psy5605 47 AALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGG----RKITSHGRRDMDR 122 (152)
Q Consensus 47 ASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gG----R~lT~~G~~~LD~ 122 (152)
..||+.|. ++|..++.|....| -|.+-+.+-|+.||++|||+...+ | -.||+.|...+-.
T Consensus 61 ~~IL~~L~-~~~~t~~eLa~~lg--------------ls~stvs~hL~~L~~aGlV~~~~~-Gr~~~y~lt~~~~~~l~~ 124 (151)
T 3f6v_A 61 RRLVQLLT-SGEQTVNNLAAHFP--------------ASRSAISQHLRVLTEAGLVTPRKD-GRFRYYRLDPQGLAQLRA 124 (151)
T ss_dssp HHHHHHGG-GCCEEHHHHHTTSS--------------SCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECHHHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEEec-CCEEEEEEChHHHHHHHH
Confidence 35777776 89999999999864 356789999999999999998764 5 4699999888876
Q ss_pred HHHHHHH
Q psy5605 123 IAAQIRV 129 (152)
Q Consensus 123 iA~~i~~ 129 (152)
+..++..
T Consensus 125 ~l~~~~~ 131 (151)
T 3f6v_A 125 LFDSFWI 131 (151)
T ss_dssp HHHHHSC
T ss_pred HHHHHHH
Confidence 6554433
No 96
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=94.48 E-value=0.076 Score=38.66 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=49.5
Q ss_pred HHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHH
Q psy5605 47 AALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDR 122 (152)
Q Consensus 47 ASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~ 122 (152)
-.||..|--+|+..++.|....+ ..-|..-++.-|+.||+.|+|+....+=-.||++|++.+..
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~------------~giS~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDE------------IRISKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTT------------CCSCHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHh------------cCCCHHHHHHHHHHHHHCCCEEecCCceEEECchHHHHHHH
Confidence 35776666679999999998651 02366889999999999999998654336999999988753
No 97
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=94.41 E-value=0.11 Score=41.02 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=43.8
Q ss_pred CcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHH
Q psy5605 58 PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRI 123 (152)
Q Consensus 58 ~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~i 123 (152)
.+....|+..|| -|..-+|.+|+.||..|+|+..+.+|-.+++-...++..+
T Consensus 49 ~L~e~~La~~lg--------------VSr~~VReAL~~L~~~Glv~~~~~~G~~V~~~~~~~~~~~ 100 (237)
T 3c7j_A 49 ALRQQELATLFG--------------VSRMPVREALRQLEAQSLLRVETHKGAVVAPLITEDAVDA 100 (237)
T ss_dssp BCCHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSEEEETTTEEEECCCHHHHHHHH
T ss_pred eeCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEEeCCCceEEecCCHHHHHHH
Confidence 467888888884 5789999999999999999999988989998877666544
No 98
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=94.34 E-value=0.085 Score=44.41 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=33.6
Q ss_pred CchhHHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHHHHHHHH
Q psy5605 84 SSGSVARKALQALEQVNIIEKSD--DGGR----KITSHGRRDMDRIAAQIR 128 (152)
Q Consensus 84 asg~iiR~~LQqLE~~glVek~~--~gGR----~lT~~G~~~LD~iA~~i~ 128 (152)
-+.+-+=.+|+.||+.|||++.. ...| .||++|+..++++-..+.
T Consensus 432 ~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~~~~~~ 482 (487)
T 1hsj_A 432 FKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLISELE 482 (487)
T ss_dssp CCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHHHHHHH
Confidence 34456667889999999998653 3455 479999999888766553
No 99
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=94.32 E-value=0.045 Score=37.34 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=44.1
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCC---ceeCcchHhh
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGG---RKITSHGRRD 119 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gG---R~lT~~G~~~ 119 (152)
.|++.| ..||..++.|....|- |.+-+.+.|+.||+.|+|+...+|. ..||+.+-..
T Consensus 27 ~Il~~L-~~~~~~~~ela~~l~i--------------s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~ 86 (102)
T 3pqk_A 27 MLVCTL-VEGEFSVGELEQQIGI--------------GQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQ 86 (102)
T ss_dssp HHHHHH-HTCCBCHHHHHHHHTC--------------CTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHH
T ss_pred HHHHHH-HhCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHH
Confidence 477777 4789999999999853 4467899999999999999877532 5688875443
No 100
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=94.14 E-value=0.31 Score=38.46 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=49.5
Q ss_pred HHHHHHHhhHhhcC-CcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC-CCceeCcchHhh
Q psy5605 44 TRCAALARHIYMRS-PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD-GGRKITSHGRRD 119 (152)
Q Consensus 44 iRaASilRkiYl~g-~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~-gGR~lT~~G~~~ 119 (152)
-|+..||+.|.-.+ ++++..|....|- +.+-+..+|+.||+.|||+.+++ +...|+++....
T Consensus 6 ~r~l~iL~~l~~~~~~~s~~ela~~~gl--------------~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 6 ARAASIMRALGSHPHGLSLAAIAQLVGL--------------PRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHHHHTCTTCEEHHHHHHHTTS--------------CHHHHHHHHHHHHTTTSEEECGGGCEEEECSHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHHHHH
Confidence 48889998887654 7999999998743 55789999999999999999875 456788775443
No 101
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=94.09 E-value=0.1 Score=38.55 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=41.5
Q ss_pred HHhhHhhcCC---cchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC--CC----ceeCcchHhh
Q psy5605 49 LARHIYMRSP---VGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD--GG----RKITSHGRRD 119 (152)
Q Consensus 49 ilRkiYl~g~---vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~--gG----R~lT~~G~~~ 119 (152)
||..|+-.++ +.+..|....|- +.+-+-.+++.||+.|||+..++ ++ -.||++|+..
T Consensus 74 iL~~L~~~~~~~~~t~~eLa~~l~i--------------s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~ 139 (181)
T 2fbk_A 74 LLLTLYRSAPPEGLRPTELSALAAI--------------SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRAL 139 (181)
T ss_dssp HHHHHHHHCCSSCBCHHHHHHHCSC--------------CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHH
Confidence 4444444443 666666665432 22334457899999999997653 23 3699999999
Q ss_pred HHHHHHHH
Q psy5605 120 MDRIAAQI 127 (152)
Q Consensus 120 LD~iA~~i 127 (152)
++++...+
T Consensus 140 ~~~~~~~~ 147 (181)
T 2fbk_A 140 VTHLLPAH 147 (181)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876554
No 102
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=94.06 E-value=0.21 Score=36.31 Aligned_cols=42 Identities=12% Similarity=0.324 Sum_probs=28.2
Q ss_pred chhHHHHHHHHHHhCCcceecC-CCCc----eeCcchHhhHHHHHHH
Q psy5605 85 SGSVARKALQALEQVNIIEKSD-DGGR----KITSHGRRDMDRIAAQ 126 (152)
Q Consensus 85 sg~iiR~~LQqLE~~glVek~~-~gGR----~lT~~G~~~LD~iA~~ 126 (152)
+.+-+=.+++.||+.|||+... .++| .||++|+..++++...
T Consensus 65 ~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~~~~~ 111 (148)
T 4fx0_A 65 ERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKAVPL 111 (148)
T ss_dssp CHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 3455667789999999996432 2344 5899999999887643
No 103
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=94.06 E-value=0.11 Score=38.84 Aligned_cols=72 Identities=13% Similarity=0.115 Sum_probs=46.1
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC---CCc-----eeCcchHhhH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD---GGR-----KITSHGRRDM 120 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~---gGR-----~lT~~G~~~L 120 (152)
||.-|. .+|.--..|.+..+..- ..+..-+.+.+-.+|+.||+.|||+.... +|| .||++|++.+
T Consensus 46 IL~~L~-~~~~~gyeI~~~l~~~~------~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l 118 (145)
T 1xma_A 46 ILSLLI-EGDSYGYEISKNIRIKT------DELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYY 118 (145)
T ss_dssp HHHHHH-HCCEEHHHHHHHHHHHH------TTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHH
T ss_pred HHHHHH-hCCCCHHHHHHHHHHhh------CCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHH
Confidence 555554 46655445544442210 11224567889999999999999986532 242 7999999999
Q ss_pred HHHHHHH
Q psy5605 121 DRIAAQI 127 (152)
Q Consensus 121 D~iA~~i 127 (152)
.......
T Consensus 119 ~~~~~~~ 125 (145)
T 1xma_A 119 KQKCEEW 125 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876554
No 104
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=94.02 E-value=0.25 Score=34.22 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=40.6
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCC
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDG 108 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~g 108 (152)
.||+.|+-.+|+.++.|....+-. +|. +.+-+-.+|+.||+.|||+..+++
T Consensus 14 ~vL~~L~~~~~~t~~el~~~l~~~--~~~--------~~~Tvt~~l~rLe~kGlv~R~~~~ 64 (126)
T 1sd4_A 14 DVMNIIWDKKSVSANEIVVEIQKY--KEV--------SDKTIRTLITRLYKKEIIKRYKSE 64 (126)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHTT--SCC--------CHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHhcCCCCHHHHHHHHhhc--CCC--------ChhhHHHHHHHHHHCCceEEEeCC
Confidence 377788889999999999998642 222 347788899999999999988753
No 105
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=93.99 E-value=0.18 Score=36.17 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=47.4
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC---CCCc-----eeCcchHhhH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD---DGGR-----KITSHGRRDM 120 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~---~gGR-----~lT~~G~~~L 120 (152)
||--|. .+|.---.|.+.... . .+..-|.+.+-.+|+.||+.|||+... .+|| .||++|+..+
T Consensus 14 IL~~L~-~~~~~Gyei~~~l~~---~-----~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 84 (115)
T 4esb_A 14 ILYIIS-QEEVYGYELSTKLNK---H-----GFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQL 84 (115)
T ss_dssp HHHHHH-HSCEEHHHHHHHHHH---T-----TCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHHH---c-----CCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHH
Confidence 443333 455544455555432 1 234567789999999999999998643 2342 4999999999
Q ss_pred HHHHHHH
Q psy5605 121 DRIAAQI 127 (152)
Q Consensus 121 D~iA~~i 127 (152)
+......
T Consensus 85 ~~~~~~~ 91 (115)
T 4esb_A 85 EEFKQSW 91 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987664
No 106
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=93.96 E-value=0.1 Score=41.07 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhHhhcC------CcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcc
Q psy5605 42 FYTRCAALARHIYMRS------PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSH 115 (152)
Q Consensus 42 ~YiRaASilRkiYl~g------~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~ 115 (152)
.+-.++..+|..-+.| .+....|+..|| -|..-+|.+|+.||..|||+..+..|-.+++-
T Consensus 29 ~~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lg--------------VSRtpVREAL~~L~~eGlv~~~~~~G~~V~~~ 94 (239)
T 2hs5_A 29 RTTRVAGILRDAIIDGTFRPGARLSEPDICAALD--------------VSRNTVREAFQILIEDRLVAHELNRGVFVRVP 94 (239)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEEeCCCeeEEeCC
Confidence 3445555555544443 256778888884 57899999999999999999999889899888
Q ss_pred hHhhHHHH
Q psy5605 116 GRRDMDRI 123 (152)
Q Consensus 116 G~~~LD~i 123 (152)
...++..+
T Consensus 95 ~~~~~~el 102 (239)
T 2hs5_A 95 TAEDITEL 102 (239)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 77766554
No 107
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=93.96 E-value=0.072 Score=41.76 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=44.7
Q ss_pred Ccch--hhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHH
Q psy5605 58 PVGV--KTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAA 125 (152)
Q Consensus 58 ~vGV--~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA~ 125 (152)
++.. ..|+...| -|.+-+..+|+.||+.|||+..++++=.||++|+..+..+..
T Consensus 22 ~~~~~~~~La~~l~--------------vs~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~~~ 77 (230)
T 1fx7_A 22 GVTPLRARIAERLD--------------QSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMR 77 (230)
T ss_dssp TSCCCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEeCCccEEECHHHHHHHHHHHH
Confidence 4555 88888763 355778899999999999999887778899999999887754
No 108
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=93.87 E-value=0.81 Score=36.02 Aligned_cols=63 Identities=17% Similarity=0.074 Sum_probs=50.4
Q ss_pred HHHHHHHhhHhhcC-CcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhH
Q psy5605 44 TRCAALARHIYMRS-PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDM 120 (152)
Q Consensus 44 iRaASilRkiYl~g-~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~L 120 (152)
-|+-.||..|.-.+ ++++..|....|- +.+-+..+|+.||+.|||+.+.++.-.|+++....-
T Consensus 8 ~r~l~iL~~l~~~~~~~~~~ela~~~gl--------------~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~~l~ 71 (249)
T 1mkm_A 8 KKAFEILDFIVKNPGDVSVSEIAEKFNM--------------SVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYG 71 (249)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEECTTSCEEECTHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEECCCCcEEECHHHHHHH
Confidence 48889998887655 7999999998743 557888999999999999998545678988765443
No 109
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=93.80 E-value=0.21 Score=37.80 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=49.9
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC---CC-----ceeCcchHhh
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD---GG-----RKITSHGRRD 119 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~---gG-----R~lT~~G~~~ 119 (152)
.||.-|. .+|.--..|.+.+... -.++...|-+-|-..|+.||+.|||+.... +| -.||++|+..
T Consensus 6 ~iL~lL~-~~~~~gyel~~~l~~~------~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~ 78 (179)
T 1yg2_A 6 VILTVLS-TRDATGYDITKEFSAS------IGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSA 78 (179)
T ss_dssp HHHHHHH-HCCBCHHHHHHHHTTG------GGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHH
T ss_pred HHHHHHh-cCCCCHHHHHHHHHHH------hCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHH
Confidence 3555554 4788888888888532 234556777899999999999999986532 22 4799999998
Q ss_pred HHH
Q psy5605 120 MDR 122 (152)
Q Consensus 120 LD~ 122 (152)
+.+
T Consensus 79 l~~ 81 (179)
T 1yg2_A 79 LGE 81 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 110
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=93.54 E-value=0.1 Score=37.13 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=47.9
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCch-hHHHHHHHHHHhCCcceecCC--CC-----ceeCcchHhh
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSG-SVARKALQALEQVNIIEKSDD--GG-----RKITSHGRRD 119 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg-~iiR~~LQqLE~~glVek~~~--gG-----R~lT~~G~~~ 119 (152)
.||.-|. .+|.-...|.+.... .|... ..-+. +.+-.+|+.||+.|||+.... .| -.||++|+..
T Consensus 17 ~IL~~L~-~~~~~gyel~~~l~~---~g~~~---~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~ 89 (118)
T 2esh_A 17 TILLLVA-EKPSHGYELAERLAE---FGIEI---PGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLY 89 (118)
T ss_dssp HHHHHHH-HSCBCHHHHHHHHHT---TCCSS---TTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHHH---hCCcc---cCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHH
Confidence 3555554 367666666666643 22110 12455 678889999999999986532 23 2799999999
Q ss_pred HHHHHHHH
Q psy5605 120 MDRIAAQI 127 (152)
Q Consensus 120 LD~iA~~i 127 (152)
+.......
T Consensus 90 l~~~~~~~ 97 (118)
T 2esh_A 90 LREILRSL 97 (118)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876654
No 111
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=93.40 E-value=0.061 Score=41.36 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=49.2
Q ss_pred HHHHHHhhHhhcCC------cchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHh
Q psy5605 45 RCAALARHIYMRSP------VGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRR 118 (152)
Q Consensus 45 RaASilRkiYl~g~------vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~ 118 (152)
.++.-+|.--+.|- +....|+..|| -|..-+|.+|+.||..|||+..+..|-.+++-...
T Consensus 16 ~v~~~l~~~I~~g~l~pG~~L~e~~La~~lg--------------VSRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~ 81 (218)
T 3sxy_A 16 KVYNLLKEMILNHELKLGEKLNVRELSEKLG--------------ISFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEK 81 (218)
T ss_dssp HHHHHHHHHHHTTSSCTTCEECHHHHHHHHT--------------CCHHHHHHHHHHHHHHTSEEEETTTEEEECCCCHH
T ss_pred HHHHHHHHHHHhCCCCCCCEeCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEEeCCCceEEcCCCHH
Confidence 34444555444442 45678888885 57899999999999999999999889888887776
Q ss_pred hHHHH
Q psy5605 119 DMDRI 123 (152)
Q Consensus 119 ~LD~i 123 (152)
++..+
T Consensus 82 ~~~el 86 (218)
T 3sxy_A 82 FIRET 86 (218)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 112
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=93.40 E-value=0.51 Score=31.09 Aligned_cols=45 Identities=13% Similarity=0.322 Sum_probs=36.3
Q ss_pred HHhhHhh-cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC
Q psy5605 49 LARHIYM-RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD 107 (152)
Q Consensus 49 ilRkiYl-~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~ 107 (152)
++..++- .+++.+..|+..+| -|.+-++..|+.||+.|+|+..++
T Consensus 26 ~l~~l~~~~~~~t~~ela~~l~--------------is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 26 VLLKMVEIEKPITSEELADIFK--------------LSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHcCCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeEeecc
Confidence 4555555 78999999999984 356789999999999999987653
No 113
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=93.36 E-value=0.16 Score=36.07 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=35.2
Q ss_pred CchhHHHHHHHHHHhCCcceecCCCC---ceeCcchHhhHHHHHHHH
Q psy5605 84 SSGSVARKALQALEQVNIIEKSDDGG---RKITSHGRRDMDRIAAQI 127 (152)
Q Consensus 84 asg~iiR~~LQqLE~~glVek~~~gG---R~lT~~G~~~LD~iA~~i 127 (152)
-|-+-+=.+|+.||+.|||+...+.. -.||++|+..+++...+.
T Consensus 42 is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~~ 88 (99)
T 2co5_A 42 ISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEFF 88 (99)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHhH
Confidence 45677788999999999999776323 479999999999876654
No 114
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=93.28 E-value=0.26 Score=35.49 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=40.1
Q ss_pred CCCchhHHHHHHHHHHhCCcceecC---CCC-----ceeCcchHhhHHHHHHHHHHHHHHHHHHHHh
Q psy5605 82 CRSSGSVARKALQALEQVNIIEKSD---DGG-----RKITSHGRRDMDRIAAQIRVSKKEAALQALA 140 (152)
Q Consensus 82 ~~asg~iiR~~LQqLE~~glVek~~---~gG-----R~lT~~G~~~LD~iA~~i~~~~~~~~~~~~~ 140 (152)
..-|.+.+-.+|+.||+.|||+... .+| -.||++|+..|+....... .+.+...+-+.
T Consensus 40 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~~-~~~~~i~~il~ 105 (117)
T 4esf_A 40 TEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKKWD-FVSSKINVLKS 105 (117)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHHHH-HHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHHHH-HHHHHHHHHHc
Confidence 3467789999999999999998653 234 3599999999999776543 33333333343
No 115
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=93.15 E-value=0.11 Score=40.84 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=47.7
Q ss_pred HHHhhHhhc--CCcch--hhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHH
Q psy5605 48 ALARHIYMR--SPVGV--KTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRI 123 (152)
Q Consensus 48 SilRkiYl~--g~vGV--~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~i 123 (152)
.+|+.||.- .++.+ ..|+...|- +.+-+..+++.||+.|||+..++.+=.||++|+....++
T Consensus 10 ~yL~~i~~l~~~~~~~~~~~la~~l~v--------------s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~ 75 (226)
T 2qq9_A 10 MYLRTIYELEEEGVTPLRARIAERLEQ--------------SGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAV 75 (226)
T ss_dssp HHHHHHHHHHHHTCCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCccHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEeCCCCeEECHHHHHHHHHH
Confidence 345556642 23333 788877632 445667799999999999998877789999999998887
Q ss_pred HHH
Q psy5605 124 AAQ 126 (152)
Q Consensus 124 A~~ 126 (152)
...
T Consensus 76 ~~~ 78 (226)
T 2qq9_A 76 MRK 78 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 116
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=93.12 E-value=0.1 Score=35.84 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhHhhcC-----C-c-chhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCc
Q psy5605 42 FYTRCAALARHIYMRS-----P-V-GVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITS 114 (152)
Q Consensus 42 ~YiRaASilRkiYl~g-----~-v-GV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~ 114 (152)
.|-..+.-+|..-+.+ . + .+..|+..|| -|.+-+|.+|+.||+.|+|+..+..|..+++
T Consensus 12 ~~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~--------------vSr~tvr~al~~L~~~Gli~~~~g~G~~v~~ 77 (102)
T 1v4r_A 12 GYADVATHFRTLIKSGELAPGDTLPSVADIRAQFG--------------VAAKTVSRALAVLKSEGLVSSRGALGTVVEK 77 (102)
T ss_dssp CHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSS--------------SCTTHHHHHTTTTTTSSCCEEETTTEEESCS
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEeCCCeEEEcc
Confidence 3556666555544432 2 2 7888888884 3678999999999999999998877877776
Q ss_pred ch
Q psy5605 115 HG 116 (152)
Q Consensus 115 ~G 116 (152)
..
T Consensus 78 ~~ 79 (102)
T 1v4r_A 78 NP 79 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 117
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=93.05 E-value=0.063 Score=40.80 Aligned_cols=62 Identities=24% Similarity=0.144 Sum_probs=37.6
Q ss_pred CCchhHHHHHHHHHHhCCcceecC----CCC-----ceeCcchHhhHHHHHHHHHHHHHHHHHHHHhhcCcee
Q psy5605 83 RSSGSVARKALQALEQVNIIEKSD----DGG-----RKITSHGRRDMDRIAAQIRVSKKEAALQALAAQGITV 146 (152)
Q Consensus 83 ~asg~iiR~~LQqLE~~glVek~~----~gG-----R~lT~~G~~~LD~iA~~i~~~~~~~~~~~~~~~~~~~ 146 (152)
.-+-+.+-.+|+.||+.|||+... .+| -.||++|++.++....+... +.+. .++..+|.|.|
T Consensus 75 ~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~~~~-l~~~-~~~~~~~~~~~ 145 (148)
T 2zfw_A 75 RLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLWER-YLSS-SAATDRQLIPV 145 (148)
T ss_dssp ECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHHHHHHH-HHCC------------
T ss_pred CCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHHHHHHHH-HHhh-ccccccccccc
Confidence 456688999999999999998653 124 47999999999988765532 2222 44555555543
No 118
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=92.90 E-value=0.3 Score=33.96 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=43.2
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCC---ceeCcchHhhH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGG---RKITSHGRRDM 120 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gG---R~lT~~G~~~L 120 (152)
.|+..|. .++..++.|+...| -|.+-+...|+.||+.|+|+...+|. ..||+.+...+
T Consensus 29 ~IL~~L~-~~~~s~~eLa~~lg--------------is~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l 89 (108)
T 2kko_A 29 QILDLLA-QGERAVEAIATATG--------------MNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARL 89 (108)
T ss_dssp HHHHHHT-TCCEEHHHHHHHHT--------------CCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHH-cCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHH
Confidence 3555554 68999999999874 35578899999999999999776432 36888774443
No 119
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=92.87 E-value=0.23 Score=33.98 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=41.7
Q ss_pred HHHHHHhhHhhc------CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCcee
Q psy5605 45 RCAALARHIYMR------SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKI 112 (152)
Q Consensus 45 RaASilRkiYl~------g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~l 112 (152)
|.-.|+--|--. +|+.|..++..+|= |-+-+|.-|..||+.|+|+.++ +||.+
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv--------------S~~TVrr~L~~Le~kG~I~R~~-ggr~~ 63 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGL--------------SIYQVRLYLEQLHDVGVLEKVN-AGKGV 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEES-CSSSS
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEecC-CCCCc
Confidence 455566666555 89999999999852 4466999999999999999998 56654
No 120
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=92.81 E-value=0.32 Score=34.19 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=50.4
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCC---ceeCcchHhhHHHHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGG---RKITSHGRRDMDRIA 124 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gG---R~lT~~G~~~LD~iA 124 (152)
.|++.|. +||..++.|....| -|.+-+.+-|+.||+.|+|+....|. -.||+.|...+....
T Consensus 22 ~Il~~L~-~~~~~~~eLa~~l~--------------is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~ 86 (118)
T 3f6o_A 22 AVLGRLS-RGPATVSELAKPFD--------------MALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWL 86 (118)
T ss_dssp HHHHHHH-TCCEEHHHHHTTCC--------------SCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhC--------------cCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHH
Confidence 4677676 79999999998763 35677888999999999998776532 468999988886665
Q ss_pred HHH
Q psy5605 125 AQI 127 (152)
Q Consensus 125 ~~i 127 (152)
...
T Consensus 87 ~~~ 89 (118)
T 3f6o_A 87 AEQ 89 (118)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 121
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=92.73 E-value=0.22 Score=40.24 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=34.4
Q ss_pred chhHHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHHHHHHHHHH
Q psy5605 85 SGSVARKALQALEQVNIIEKSD--DGGR----KITSHGRRDMDRIAAQIRVS 130 (152)
Q Consensus 85 sg~iiR~~LQqLE~~glVek~~--~gGR----~lT~~G~~~LD~iA~~i~~~ 130 (152)
+.+-+=.+++.||+.|||+..+ +++| .||++|+..++++...+...
T Consensus 187 ~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~~~~~ 238 (250)
T 1p4x_A 187 KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLLAQVNQL 238 (250)
T ss_dssp CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHHHHHHHHH
Confidence 3455666889999999998654 3455 48999999999886665443
No 122
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=92.68 E-value=0.29 Score=39.15 Aligned_cols=58 Identities=12% Similarity=0.305 Sum_probs=47.9
Q ss_pred HHHHHHHhhHhh-cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC-CCceeCcc
Q psy5605 44 TRCAALARHIYM-RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD-GGRKITSH 115 (152)
Q Consensus 44 iRaASilRkiYl-~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~-gGR~lT~~ 115 (152)
-|+..||+.|-- .+++++..|.+.-|- +.+-+..+|+.|++.|||+++++ +...|++.
T Consensus 6 ~Ral~IL~~l~~~~~~lsl~eia~~lgl--------------~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~ 65 (260)
T 3r4k_A 6 SKALTLLTYFNHGRLEIGLSDLTRLSGM--------------NKATVYRLMSELQEAGFVEQVEGARSYRLGPQ 65 (260)
T ss_dssp HHHHHHHTTCBTTBSEEEHHHHHHHHCS--------------CHHHHHHHHHHHHHTTSEEECSSSSEEEECTT
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHH
Confidence 378889988875 578999999998753 55789999999999999999986 55677775
No 123
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=92.52 E-value=0.38 Score=33.05 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=42.1
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCc----eeCcchH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGR----KITSHGR 117 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR----~lT~~G~ 117 (152)
.|+..|. +++..++.|....| -|.+-+.+.|+.||+.|+|+...+ || .||+.+-
T Consensus 30 ~IL~~L~-~~~~~~~ela~~l~--------------is~stvs~~L~~L~~~Glv~~~~~-gr~~~y~l~~~~~ 87 (106)
T 1r1u_A 30 RIMELLS-VSEASVGHISHQLN--------------LSQSNVSHQLKLLKSVHLVKAKRQ-GQSMIYSLDDIHV 87 (106)
T ss_dssp HHHHHHH-HCCBCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEESSHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeEEEEe-CCEEEEEEChHHH
Confidence 5676666 88999999999874 355788999999999999997764 44 5676653
No 124
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=92.31 E-value=0.66 Score=31.03 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=44.8
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCC---ceeCcchHhhHHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGG---RKITSHGRRDMDR 122 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gG---R~lT~~G~~~LD~ 122 (152)
.|++.|. +|+..++.|....|- |.+-+.+-|+.||+.|+|+...+|. ..||+.+-..+-.
T Consensus 27 ~Il~~L~-~~~~~~~ela~~l~i--------------s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~ 89 (98)
T 3jth_A 27 QILCMLH-NQELSVGELCAKLQL--------------SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIK 89 (98)
T ss_dssp HHHHHTT-TSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHH
T ss_pred HHHHHHh-cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHH
Confidence 4666555 489999999999743 5678999999999999999887532 3577776554433
No 125
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=92.27 E-value=0.16 Score=39.49 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=36.3
Q ss_pred hhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCccee--cCC--CCceeCcchHh
Q psy5605 61 VKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEK--SDD--GGRKITSHGRR 118 (152)
Q Consensus 61 V~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek--~~~--gGR~lT~~G~~ 118 (152)
-..|+..|| -|..-+|.+|+.||..|+|+. .+. +|-.+++-...
T Consensus 31 E~~La~~lg--------------VSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~~~~ 78 (239)
T 2di3_A 31 ERALSETLG--------------VSRSSLREALRVLEALGTISTATGSGPRSGTIITAAPGQ 78 (239)
T ss_dssp HHHHHHHHT--------------CCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECCCCCS
T ss_pred HHHHHHHHC--------------CCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeCCcch
Confidence 347888874 578999999999999999999 887 78888776554
No 126
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=92.26 E-value=0.23 Score=35.60 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=36.4
Q ss_pred CCCchhHHHHHHHHHHhCCcceec--C--CCC-----ceeCcchHhhHHHHHHHH
Q psy5605 82 CRSSGSVARKALQALEQVNIIEKS--D--DGG-----RKITSHGRRDMDRIAAQI 127 (152)
Q Consensus 82 ~~asg~iiR~~LQqLE~~glVek~--~--~gG-----R~lT~~G~~~LD~iA~~i 127 (152)
..-|.+.+-.+|+.||+.|||+.. + .+| -.||++|++.+.....+.
T Consensus 52 ~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~ 106 (115)
T 2dql_A 52 YRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLARLW 106 (115)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence 356778899999999999999864 2 224 379999999999876654
No 127
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=92.07 E-value=0.55 Score=34.81 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=57.7
Q ss_pred HHHHhhHh-hcCCcchhhHHHHhCCCCCCCCCCCccC--------CCchhHHHHHHHHHHhCCcceecCCCC-----cee
Q psy5605 47 AALARHIY-MRSPVGVKTVTKIFGGRKRNGVCPSHFC--------RSSGSVARKALQALEQVNIIEKSDDGG-----RKI 112 (152)
Q Consensus 47 ASilRkiY-l~g~vGV~~L~~~YGg~krrG~~P~h~~--------~asg~iiR~~LQqLE~~glVek~~~gG-----R~l 112 (152)
-.+|..|| +.+..|++.+..+.=|+++.-+.-.|.. .=+..-+|.++.||...|+++.+...+ =.|
T Consensus 19 qkiLs~V~r~~~rfG~~~iidvLrGs~~~ki~~~~~~l~tfGigk~~s~~~w~~lirqLi~~G~L~~~~~~~~~~~~L~L 98 (134)
T 3aaf_A 19 FKLLSAVDILGEKFGIGLPILFLRGSNSQRLADQYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICAL 98 (134)
T ss_dssp HHHHHHHHHTTTCSCTHHHHHHHTTCCCTTSCGGGGGSTTTTTTTTSCHHHHHHHHHHHHHTTSEEEEECSSTTCEEEEE
T ss_pred HHHHHHHHHHcCcccccchhhhhcCCcHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHcCCceeecCcCccCceEEE
Confidence 35677777 6789999999999999887665442211 123347999999999999999875432 689
Q ss_pred CcchHhhHHHH
Q psy5605 113 TSHGRRDMDRI 123 (152)
Q Consensus 113 T~~G~~~LD~i 123 (152)
|++|+..|..-
T Consensus 99 t~~g~~vL~~~ 109 (134)
T 3aaf_A 99 TKKGRNWLHKA 109 (134)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHhCC
Confidence 99999887754
No 128
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=92.00 E-value=0.26 Score=35.05 Aligned_cols=57 Identities=14% Similarity=0.258 Sum_probs=41.5
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCc----eeCcchHhh
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGR----KITSHGRRD 119 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR----~lT~~G~~~ 119 (152)
.|+..|.-.++..++.|....| =|.+-+.+.|+.||+.|+|+...+ || .||+.+-..
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~--------------is~stvs~~L~~L~~~Glv~~~~~-gr~~~y~l~~~~~~~ 106 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILG--------------VTIANASHHLRTLYKQGVVNFRKE-GKLALYSLGDEHIRQ 106 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEC-----CCEEEESCHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeEEEEE-CCEEEEEECHHHHHH
Confidence 4666665579999999999874 355788899999999999998764 44 677765443
No 129
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=91.67 E-value=0.68 Score=37.30 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=47.2
Q ss_pred HHhhHhhc--CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCCce----eCcchHhhH
Q psy5605 49 LARHIYMR--SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGGRK----ITSHGRRDM 120 (152)
Q Consensus 49 ilRkiYl~--g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gGR~----lT~~G~~~L 120 (152)
+|..||-. +++.+..|....+ -.++.+- .+|+.||+.|||++.. ...|. ||++|+..+
T Consensus 39 vL~~L~~~~~~~~~~~el~~~l~-------------~~~~t~t-~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 39 LLTYLFHQQENTLPFKKIVSDLC-------------YKQSDLV-QHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHSCSCSEEEHHHHHHHSS-------------SCGGGTH-HHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHhcCCCCcCHHHHHHHHC-------------CCHhhHH-HHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 56666663 4677777776642 2234444 5789999999998653 33443 899999988
Q ss_pred HHHHHHHHHHH
Q psy5605 121 DRIAAQIRVSK 131 (152)
Q Consensus 121 D~iA~~i~~~~ 131 (152)
+.+-..+.+.+
T Consensus 105 ~~~~~~~~~~~ 115 (250)
T 1p4x_A 105 AERVTLFDQII 115 (250)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88776665444
No 130
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=91.54 E-value=0.44 Score=38.48 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=53.2
Q ss_pred HHHHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC-CCceeCcchHhhHHHH
Q psy5605 45 RCAALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD-GGRKITSHGRRDMDRI 123 (152)
Q Consensus 45 RaASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~-gGR~lT~~G~~~LD~i 123 (152)
....||..|.-++++++..|++..|- +.+-+...|+.||+.|||+.... +.-.||++|+......
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lgl--------------sksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~~ 218 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDK--------------SEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKLN 218 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHHH
Confidence 34568888888899999999999863 55678889999999999998743 3468999999986654
Q ss_pred H
Q psy5605 124 A 124 (152)
Q Consensus 124 A 124 (152)
.
T Consensus 219 ~ 219 (244)
T 2wte_A 219 K 219 (244)
T ss_dssp C
T ss_pred h
Confidence 3
No 131
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=91.54 E-value=0.92 Score=35.94 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=47.7
Q ss_pred HHHHHHHhhHhh-cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHh
Q psy5605 44 TRCAALARHIYM-RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRR 118 (152)
Q Consensus 44 iRaASilRkiYl-~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~ 118 (152)
-|+..||+.|.- .+++++..|.+..|- +.+-+..+|+.|++.|||+.+. +...|++....
T Consensus 14 ~r~l~iL~~l~~~~~~~~~~eia~~~gl--------------~~stv~r~l~~L~~~G~v~~~~-~~Y~Lg~~~~~ 74 (257)
T 2g7u_A 14 ERGFAVLLAFDAQRPNPTLAELATEAGL--------------SRPAVRRILLTLQKLGYVAGSG-GRWSLTPRVLS 74 (257)
T ss_dssp HHHHHHHHTCSSSCSSCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEET-TEEEECGGGHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEeCC-CEEEEcHHHHH
Confidence 377788887764 468999999999753 4578889999999999999874 56788887543
No 132
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=91.52 E-value=0.4 Score=31.57 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=37.0
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD 106 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~ 106 (152)
.|+..|.-.+++.+..|+..+|- |.+-+|..|+.||+.|+|+..+
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgv--------------s~~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAV--------------TDYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTS--------------CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEec
Confidence 46666666789999999999853 5678999999999999999653
No 133
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=91.32 E-value=0.31 Score=37.58 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=43.9
Q ss_pred HHHhhHhhc--CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC------CCCc-----eeCc
Q psy5605 48 ALARHIYMR--SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD------DGGR-----KITS 114 (152)
Q Consensus 48 SilRkiYl~--g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~------~gGR-----~lT~ 114 (152)
+|+..|.-+ +...+..|.... -.-|-+-|+.-|+.|++.|+|++.. ..|| .||+
T Consensus 33 ~IL~~Ll~~p~~~~ta~eL~~~l-------------~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~ 99 (151)
T 3u1d_A 33 DVLHQILAQPDGVLSVEELLYRN-------------PDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTG 99 (151)
T ss_dssp HHHHHHHHSTTSCBCHHHHHHHC-------------TTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECH
T ss_pred HHHHHHHcCCCCCCCHHHHHHhc-------------CCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECH
Confidence 355555444 235666665432 1247789999999999999999652 1254 8999
Q ss_pred chHhhHHHH
Q psy5605 115 HGRRDMDRI 123 (152)
Q Consensus 115 ~G~~~LD~i 123 (152)
+|+..|+..
T Consensus 100 ~Gr~~l~~y 108 (151)
T 3u1d_A 100 EGIALLRAV 108 (151)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999873
No 134
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=91.16 E-value=0.83 Score=36.33 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=48.9
Q ss_pred HHHHHHHhhHhh-cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhh
Q psy5605 44 TRCAALARHIYM-RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRD 119 (152)
Q Consensus 44 iRaASilRkiYl-~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~ 119 (152)
-|+..||+.|.- .+++++..|.+..|- +.+-+..+|+.|++.|||+.++++...|+++.-..
T Consensus 23 ~r~l~iL~~l~~~~~~~~~~eia~~~gl--------------~kstv~r~l~tL~~~G~v~~~~~~~Y~lg~~~~~l 85 (260)
T 2o0y_A 23 TRVIDLLELFDAAHPTRSLKELVEGTKL--------------PKTTVVRLVATMCARSVLTSRADGSYSLGPEMLRW 85 (260)
T ss_dssp HHHHHHHTTCBTTBSSBCHHHHHHHHCC--------------CHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHH
T ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEECCCCeEEecHHHHHH
Confidence 477888877753 578999999998753 45788899999999999999886556788775443
No 135
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=91.02 E-value=0.44 Score=33.57 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=42.3
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCc----eeCcchH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGR----KITSHGR 117 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR----~lT~~G~ 117 (152)
.|++.|. .++..+..|....| -|.+-+.+.|+.||+.|+|+...+ || .||+.+-
T Consensus 25 ~IL~~L~-~~~~~~~eLa~~lg--------------is~stvs~~L~~L~~~GlV~~~~~-gr~~~y~l~~~~~ 82 (118)
T 2jsc_A 25 RILVALL-DGVCYPGQLAAHLG--------------LTRSNVSNHLSCLRGCGLVVATYE-GRQVRYALADSHL 82 (118)
T ss_dssp HHHHHHH-TTCCSTTTHHHHHS--------------SCHHHHHHHHHHHTTTTSEEEEEC-SSSEEEEESSHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCceEEEEE-CCEEEEEEChHHH
Confidence 5777665 78899999999874 356789999999999999997764 43 5787653
No 136
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=90.98 E-value=1.5 Score=31.20 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=51.4
Q ss_pred HHHhhHhhcCC--cchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC---C-CCc--eeCcchHhh
Q psy5605 48 ALARHIYMRSP--VGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD---D-GGR--KITSHGRRD 119 (152)
Q Consensus 48 SilRkiYl~g~--vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~---~-gGR--~lT~~G~~~ 119 (152)
.|+..|+-.++ +.+..|+...| -|.+-+...|+.||+.|+|+..+ + +|+ ..++.....
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~--------------~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~ 95 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLK--------------LDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQ 95 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHH
Confidence 47777776655 99999999985 36788999999999999998753 2 342 334433444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5605 120 MDRIAAQIRVSKKEAALQAL 139 (152)
Q Consensus 120 LD~iA~~i~~~~~~~~~~~~ 139 (152)
+.....++..+..+.-.+.|
T Consensus 96 ~~~~i~~~~~~~~~~~~~~l 115 (123)
T 3r0a_A 96 IRNIIQKIVQSWADRLGQEL 115 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555444443
No 137
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=90.36 E-value=0.68 Score=33.76 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=35.2
Q ss_pred CCchhHHHHHHHHHHhCCcceecC--CCC-----ceeCcchHhhHHHHHHHH
Q psy5605 83 RSSGSVARKALQALEQVNIIEKSD--DGG-----RKITSHGRRDMDRIAAQI 127 (152)
Q Consensus 83 ~asg~iiR~~LQqLE~~glVek~~--~gG-----R~lT~~G~~~LD~iA~~i 127 (152)
.-+.+.+=.+|+.||+.|||+... .+| -.||++|+..|+......
T Consensus 49 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~~~ 100 (123)
T 3ri2_A 49 PIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQW 100 (123)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHHHH
Confidence 456678888999999999998652 122 349999999999987664
No 138
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=90.19 E-value=0.34 Score=37.67 Aligned_cols=73 Identities=16% Similarity=0.081 Sum_probs=51.5
Q ss_pred chHHHHHHHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC---CCceeCcch
Q psy5605 40 DWFYTRCAALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD---GGRKITSHG 116 (152)
Q Consensus 40 DW~YiRaASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~---gGR~lT~~G 116 (152)
.+-+.++-+....++-.+++.+..++...|- |.+-+=..+++||+.||++..++ .+=.||++|
T Consensus 9 ~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~i--------------sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G 74 (230)
T 3cta_A 9 YYRAIKKIKEAAEASNRAYLTSSKLADMLGI--------------SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKG 74 (230)
T ss_dssp HHHHHHHHHHHTTTSSEEECCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHhcccccCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHH
Confidence 4555555555555555566778888887643 44566777899999999998742 355799999
Q ss_pred HhhHHHHHHH
Q psy5605 117 RRDMDRIAAQ 126 (152)
Q Consensus 117 ~~~LD~iA~~ 126 (152)
+..++.+-..
T Consensus 75 ~~l~~~~~~~ 84 (230)
T 3cta_A 75 LDVLYTEFAD 84 (230)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999776543
No 139
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=90.15 E-value=0.62 Score=35.75 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=43.0
Q ss_pred HHHHHHHHhhHhhcCC------c-chhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcc
Q psy5605 43 YTRCAALARHIYMRSP------V-GVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSH 115 (152)
Q Consensus 43 YiRaASilRkiYl~g~------v-GV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~ 115 (152)
|-.++..+|.--+.|- + .-..|+..|| -|..-+|.+|+.||..|||+..+..|-.+++.
T Consensus 9 ~~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~g--------------VSR~tVReAL~~L~~eGlv~~~~g~G~~V~~~ 74 (239)
T 1hw1_A 9 AGFAEEYIIESIWNNRFPPGTILPAERELSELIG--------------VTRTTLREVLQRLARDGWLTIQHGKPTKVNNF 74 (239)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEETTEEEEECCH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCcEEEecCCCcEeeCc
Confidence 3445555555444442 3 4567888874 57899999999999999999999778778753
No 140
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=90.11 E-value=0.2 Score=39.69 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=45.0
Q ss_pred cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC---CCC-----ceeCcchHhhHHHHHH
Q psy5605 56 RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD---DGG-----RKITSHGRRDMDRIAA 125 (152)
Q Consensus 56 ~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~---~gG-----R~lT~~G~~~LD~iA~ 125 (152)
.+|.---.|.+.+... -.++...|-+-|-.+|+.||+.|||+... ++| -.||++|+..|.+...
T Consensus 47 ~~p~~GYeL~~~l~~~------~~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~ 118 (204)
T 3l9f_A 47 KKERSGYEINDILQNQ------LSYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQ 118 (204)
T ss_dssp SCCEEHHHHHHHHHHT------STTTEECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH------hCCccCCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHh
Confidence 5666656666666432 22345667788999999999999998542 233 3699999999976443
No 141
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=90.01 E-value=0.75 Score=33.81 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=41.6
Q ss_pred HHHHHhhHhhc--CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC-CCCceeCcch
Q psy5605 46 CAALARHIYMR--SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD-DGGRKITSHG 116 (152)
Q Consensus 46 aASilRkiYl~--g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~-~gGR~lT~~G 116 (152)
|-.+|..|..+ +++.+..++..+| -|-+.+|++|++|+++|||+... .||-.|+...
T Consensus 16 Al~~L~~La~~~~~~~~~~~iA~~~~--------------i~~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p 75 (149)
T 1ylf_A 16 AVHILSILKNNPSSLCTSDYMAESVN--------------TNPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDL 75 (149)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSEEEC---CCEEESSCG
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCcEEEccCCCceEeCCCh
Confidence 34455555543 4688888998874 46689999999999999998665 4788887754
No 142
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=89.80 E-value=0.2 Score=36.07 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHhCCcceecC---CCC-----ceeCcchHhhHHHHHHHH
Q psy5605 86 GSVARKALQALEQVNIIEKSD---DGG-----RKITSHGRRDMDRIAAQI 127 (152)
Q Consensus 86 g~iiR~~LQqLE~~glVek~~---~gG-----R~lT~~G~~~LD~iA~~i 127 (152)
.+.+-.+|+.||+.|||+... .+| -.||++|++.|++.....
T Consensus 47 ~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~~~~ 96 (117)
T 3elk_A 47 QGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHSQAL 96 (117)
T ss_dssp TTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTSTTH
T ss_pred cchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHHH
Confidence 378899999999999998543 233 359999999999865543
No 143
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=89.68 E-value=0.83 Score=32.63 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=42.3
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCC-c--eeCcchHhhHHHHHH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGG-R--KITSHGRRDMDRIAA 125 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gG-R--~lT~~G~~~LD~iA~ 125 (152)
|++.|. +++..++.|....| -|.+-+.+.|+.||+.|+|....+|. . .||+++ +..++.
T Consensus 51 IL~~L~-~~~~s~~ela~~lg--------------is~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~---l~~~~~ 112 (122)
T 1r1t_A 51 LLSLLA-RSELCVGDLAQAIG--------------VSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHH---IVALYQ 112 (122)
T ss_dssp HHHHHT-TCCBCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHH---HHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHH---HHHHHH
Confidence 455444 57889999998874 35678889999999999999776432 2 345443 444444
Q ss_pred HHHH
Q psy5605 126 QIRV 129 (152)
Q Consensus 126 ~i~~ 129 (152)
.+..
T Consensus 113 ~l~~ 116 (122)
T 1r1t_A 113 NALD 116 (122)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 144
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=89.60 E-value=0.75 Score=33.89 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=41.5
Q ss_pred HHHhhHhhc---CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCCceeCcchH
Q psy5605 48 ALARHIYMR---SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGGRKITSHGR 117 (152)
Q Consensus 48 SilRkiYl~---g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gGR~lT~~G~ 117 (152)
.+|..|..+ +++.+..++..+| -|...+|++|++|.++|+|+... +||-.|+..-.
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~--------------i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~ 75 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENN--------------LSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAE 75 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGG
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCcc
Confidence 344444443 4688999998873 46689999999999999998665 46888876543
No 145
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=89.53 E-value=0.32 Score=40.42 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=58.3
Q ss_pred HHHHHHHhhHhh---c---CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCC---CceeCc
Q psy5605 44 TRCAALARHIYM---R---SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDG---GRKITS 114 (152)
Q Consensus 44 iRaASilRkiYl---~---g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~g---GR~lT~ 114 (152)
+|+-|++-.||- . +.+-++.|-...+. -.=+..-+|.+|.-|++.||++....| +..||+
T Consensus 22 ~~a~Sli~tl~Gd~~~~~g~~i~~~~Li~l~~~-----------~Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~ 90 (266)
T 3l09_A 22 LKLWSVLVTCLGDVSRDGVIEVSGVALSSFVER-----------MGLQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSD 90 (266)
T ss_dssp CCHHHHHHHHHHHHHHTTCCCEEHHHHHHHHHH-----------TTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH
T ss_pred CChhHHHHHHHHHHhccCCCcccHHHHHHHHHH-----------cCCCchHHHHHHHHHHHCCCeeeeecCCcceEEECH
Confidence 477789888883 2 46888887766532 123567899999999999999987654 578999
Q ss_pred chHhhHHHHHHHHHH
Q psy5605 115 HGRRDMDRIAAQIRV 129 (152)
Q Consensus 115 ~G~~~LD~iA~~i~~ 129 (152)
.|++.+++....|..
T Consensus 91 ~g~~~l~~~~~ri~~ 105 (266)
T 3l09_A 91 SALTQTRAVAGRIYG 105 (266)
T ss_dssp HHHHHHHTTHHHHHS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999988887764
No 146
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=89.20 E-value=0.92 Score=36.59 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=47.1
Q ss_pred HHHHHHHhhHhhc-CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcch
Q psy5605 44 TRCAALARHIYMR-SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHG 116 (152)
Q Consensus 44 iRaASilRkiYl~-g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G 116 (152)
-|+..||..|--. +++++..|.+.-|- +.+-+..+|+.|++.|||++++++...|++.=
T Consensus 30 ~Ral~IL~~l~~~~~~ltl~eia~~lgl--------------~ksTv~RlL~tL~~~G~v~~~~~~~Y~LG~~~ 89 (275)
T 3mq0_A 30 RRAVRILDLVAGSPRDLTAAELTRFLDL--------------PKSSAHGLLAVMTELDLLARSADGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHHHTC--------------C--CHHHHHHHHHHTTSEEECTTSEEEECTHH
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEECCCCcEEehHHH
Confidence 4888899888865 57999999999754 33568899999999999999986567887763
No 147
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=88.72 E-value=0.81 Score=31.21 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=38.8
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceec
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKS 105 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~ 105 (152)
.|+..|--+|.+.|..|...| .-|..-||.-|..||+.|+|+..
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l--------------~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTL--------------NTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHT--------------TCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHH--------------CcCHHHHHHHHHHHHHCCCEEEe
Confidence 466667778999999999998 46789999999999999999987
No 148
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=88.69 E-value=0.83 Score=31.52 Aligned_cols=67 Identities=10% Similarity=0.181 Sum_probs=46.1
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCC-CceeCcchHhhHHHHHHHH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDG-GRKITSHGRRDMDRIAAQI 127 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~g-GR~lT~~G~~~LD~iA~~i 127 (152)
|+..|+- ++..+..+....| -|.+-+.+.|+.||+.|+|....++ +..+|..|...+ .++..+
T Consensus 37 il~~L~~-~~~s~~ela~~l~--------------is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~-~~~~~~ 100 (119)
T 2lkp_A 37 ILTQLRN-GPLPVTDLAEAIG--------------MEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVA-QLLDEA 100 (119)
T ss_dssp HHHHHHH-CCCCHHHHHHHHS--------------SCHHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHH-HHHHHH
T ss_pred HHHHHHH-CCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHH-HHHHHH
Confidence 5555554 7889999988874 3567888999999999999876532 346777776543 344444
Q ss_pred HHHH
Q psy5605 128 RVSK 131 (152)
Q Consensus 128 ~~~~ 131 (152)
...+
T Consensus 101 ~~~~ 104 (119)
T 2lkp_A 101 IYHS 104 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 149
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=88.44 E-value=1.2 Score=36.05 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhHhhcCC------c-chhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCc
Q psy5605 42 FYTRCAALARHIYMRSP------V-GVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITS 114 (152)
Q Consensus 42 ~YiRaASilRkiYl~g~------v-GV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~ 114 (152)
.|.+.+..++.--..|- + ....|+..|| -|..-+|.+|+.|++.|+|+..+..|-.+++
T Consensus 30 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~--------------vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 95 (272)
T 3eet_A 30 AYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYG--------------VSDTVALEARKVLMAEGLVEGRSGSGTYVRE 95 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEECCC--EEECC
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEEecCceEEEec
Confidence 56777777766555542 3 6778888884 5789999999999999999999977866665
Q ss_pred c
Q psy5605 115 H 115 (152)
Q Consensus 115 ~ 115 (152)
.
T Consensus 96 ~ 96 (272)
T 3eet_A 96 R 96 (272)
T ss_dssp C
T ss_pred C
Confidence 4
No 150
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=88.00 E-value=1.2 Score=33.85 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=35.9
Q ss_pred CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCCceeCcc
Q psy5605 57 SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGGRKITSH 115 (152)
Q Consensus 57 g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gGR~lT~~ 115 (152)
+|+.+..++..+| -|...+|++|++|.++|+|+... .||-.|+..
T Consensus 43 ~~~s~~eIA~~~~--------------i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~ 89 (159)
T 3lwf_A 43 GPISLRSIAQDKN--------------LSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGD 89 (159)
T ss_dssp CCBCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSC
T ss_pred CCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCeEEEecCCCCceEecCC
Confidence 4788899998873 46789999999999999999665 367666643
No 151
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=87.51 E-value=1.4 Score=34.73 Aligned_cols=60 Identities=15% Similarity=0.284 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhHhhcCC------c-chhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCc
Q psy5605 42 FYTRCAALARHIYMRSP------V-GVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITS 114 (152)
Q Consensus 42 ~YiRaASilRkiYl~g~------v-GV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~ 114 (152)
.|...+..+|.--..|- + ....|+..|| -|..-+|.+|+.|++.|+|+..+..|-.+++
T Consensus 10 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~--------------vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 75 (236)
T 3edp_A 10 LFEVIASKIKDSINRDEYKTGMLMPNETALQEIYS--------------SSRTTIRRAVDLLVEEGLVVRKNGVGLYVQP 75 (236)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEECCceEEEcc
Confidence 35566666666555542 3 5677888874 5789999999999999999999977877776
Q ss_pred c
Q psy5605 115 H 115 (152)
Q Consensus 115 ~ 115 (152)
.
T Consensus 76 ~ 76 (236)
T 3edp_A 76 K 76 (236)
T ss_dssp C
T ss_pred C
Confidence 5
No 152
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=87.24 E-value=2 Score=30.23 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=47.8
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceec-----CC-CCceeCc------c
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKS-----DD-GGRKITS------H 115 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~-----~~-gGR~lT~------~ 115 (152)
.|++.+.-.+++....|+..+| -|.+-++..|+.||+.|+|+.. +. -|..+|. .
T Consensus 8 ~il~~L~~~~~~~~~ela~~lg--------------~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~ 73 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLG--------------ISETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITGVDTK 73 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHT--------------SCHHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEeccccccChHHhCccEEEEEEEEEC
Confidence 4677666778899999999984 3668899999999999999743 21 2666654 4
Q ss_pred hHhhHHHHHHHHH
Q psy5605 116 GRRDMDRIAAQIR 128 (152)
Q Consensus 116 G~~~LD~iA~~i~ 128 (152)
+ ..++.++..+.
T Consensus 74 ~-~~~~~~~~~l~ 85 (141)
T 1i1g_A 74 P-EKLFEVAEKLK 85 (141)
T ss_dssp G-GGHHHHHHHHH
T ss_pred c-hhHHHHHHHHh
Confidence 4 35666666553
No 153
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=86.88 E-value=2 Score=34.13 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=45.6
Q ss_pred HHHHHHHhhHhh-cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcch
Q psy5605 44 TRCAALARHIYM-RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHG 116 (152)
Q Consensus 44 iRaASilRkiYl-~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G 116 (152)
-|+..||..|.- .+++++..|....|- +.+-+..+|+.|++.|||+++. +...|++.-
T Consensus 21 ~r~l~iL~~l~~~~~~~~~~eia~~~gl--------------~~stv~r~l~tL~~~G~v~~~~-~~Y~Lg~~~ 79 (265)
T 2ia2_A 21 ARGLAVIRCFDHRNQRRTLSDVARATDL--------------TRATARRFLLTLVELGYVATDG-SAFWLTPRV 79 (265)
T ss_dssp HHHHHHHHTCCSSCSSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEEESS-SEEEECGGG
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEecC-CEEEEcHHH
Confidence 477788877663 478999999998753 4578889999999999999974 556777653
No 154
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=86.74 E-value=2.9 Score=32.24 Aligned_cols=67 Identities=12% Similarity=0.212 Sum_probs=49.3
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceec--CCCCc-------------ee
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKS--DDGGR-------------KI 112 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~--~~gGR-------------~l 112 (152)
.|++.|. ++++.+..|+...| -|.+-++.-|+.||+.|+|+.. ...|+ .|
T Consensus 24 ~IL~~L~-~~~~s~~eLA~~lg--------------lS~stv~~~l~~Le~~GlI~~~~~~~~~~~~~~~~g~~~~~~~v 88 (192)
T 1uly_A 24 KILKLLR-NKEMTISQLSEILG--------------KTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADVFYI 88 (192)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSEEEE
T ss_pred HHHHHHH-cCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEEeccccccchhhhcCcceEEEEE
Confidence 5787787 89999999999874 3567899999999999999876 22243 36
Q ss_pred CcchH-hhHHHHHHHHHH
Q psy5605 113 TSHGR-RDMDRIAAQIRV 129 (152)
Q Consensus 113 T~~G~-~~LD~iA~~i~~ 129 (152)
|.+|. ..++.++..+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~ 106 (192)
T 1uly_A 89 NLYLGDEELRYIARSRLK 106 (192)
T ss_dssp CSCSSCHHHHHHHHHHHH
T ss_pred ecCCchhHHHHHHHHHHH
Confidence 77773 456666655443
No 155
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=86.65 E-value=0.98 Score=31.70 Aligned_cols=45 Identities=7% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD 106 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~ 106 (152)
.|+..|--+|.+.|..|...| .-|..-||.-|..||+.|+|....
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l--------------~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARL--------------QTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHT--------------TCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHH--------------CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 366667778999999999998 467899999999999999998763
No 156
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=85.94 E-value=2.2 Score=33.63 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhHhhcC------Cc-chhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCc
Q psy5605 42 FYTRCAALARHIYMRS------PV-GVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITS 114 (152)
Q Consensus 42 ~YiRaASilRkiYl~g------~v-GV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~ 114 (152)
.|...+..+|.--..| .+ ....|+..|| -|..-+|.+|+.|++.|+|+..++.|-.+++
T Consensus 11 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~--------------vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 76 (243)
T 2wv0_A 11 IYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFG--------------ISRMTVRQALSNLVNEGLLYRLKGRGTFVSK 76 (243)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEECTTSCEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCcEEEeCCCeEEEeC
Confidence 4666666665544443 13 6678888884 4788999999999999999999877877776
Q ss_pred c
Q psy5605 115 H 115 (152)
Q Consensus 115 ~ 115 (152)
.
T Consensus 77 ~ 77 (243)
T 2wv0_A 77 P 77 (243)
T ss_dssp C
T ss_pred C
Confidence 4
No 157
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=85.87 E-value=0.65 Score=30.33 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=39.0
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD 107 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~ 107 (152)
||.-|+-.+|+.+..|....+-. .+ -+.+-+..+|+.||+.|+|+..++
T Consensus 14 vL~~L~~~~~~t~~ei~~~l~~~--~~--------~s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 14 VMKVIWKHSSINTNEVIKELSKT--ST--------WSPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp HHHHHHTSSSEEHHHHHHHHHHH--SC--------CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHcCCCCCHHHHHHHHhhc--CC--------ccHHHHHHHHHHHHHCCCeEEEec
Confidence 66677778999999999998531 11 245788999999999999998774
No 158
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=85.74 E-value=1.4 Score=33.19 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=35.9
Q ss_pred CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC--CCCceeCcc
Q psy5605 57 SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD--DGGRKITSH 115 (152)
Q Consensus 57 g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~--~gGR~lT~~ 115 (152)
+++.+..++..+| -|...+|++|++|.++|||+... .||-.|+..
T Consensus 27 ~~~s~~~IA~~~~--------------is~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~ 73 (162)
T 3k69_A 27 SKVASRELAQSLH--------------LNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLA 73 (162)
T ss_dssp SCBCHHHHHHHHT--------------SCGGGTHHHHHHHHHTTSSEEECSTTCEEECCSC
T ss_pred CCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEeecCCCCCeEecCC
Confidence 4688999999884 45678999999999999998665 357777654
No 159
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=84.48 E-value=0.81 Score=32.27 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=40.2
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCc
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGR 110 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR 110 (152)
||+-|+-.+|+.+..|....+.. + .-+.+-+..+|..||+.|||+..++ ||
T Consensus 40 VL~~L~~~~~~t~~eL~~~l~~~--~--------~~s~sTVt~~L~rLe~KGlV~R~~~-gR 90 (99)
T 2k4b_A 40 VMRVIWSLGEARVDEIYAQIPQE--L--------EWSLATVKTLLGRLVKKEMLSTEKE-GR 90 (99)
T ss_dssp HHHHHHHHSCEEHHHHHHTCCGG--G--------CCCHHHHHHHHHHHHHTTSCEEEEE-TT
T ss_pred HHHHHHhCCCCCHHHHHHHHhcc--c--------CCCHhhHHHHHHHHHHCCCEEEEeC-CC
Confidence 77778878999999999987542 1 1345778899999999999998774 55
No 160
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=81.60 E-value=2.8 Score=27.04 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=36.7
Q ss_pred HHHhhHhhc-CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC
Q psy5605 48 ALARHIYMR-SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD 107 (152)
Q Consensus 48 SilRkiYl~-g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~ 107 (152)
.||.-|--. +|+.+..|+...|- |.+.+.++|+.||+.|+|+..+.
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lgl--------------sr~tv~~~l~~L~~~G~I~~~~~ 60 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQV--------------PKKTLNQVLYRLKKEDRVSSPSP 60 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCS--------------CHHHHHHHHHHHHHTTSEEEEET
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEecCCC
Confidence 466655544 58999999999854 47899999999999999987553
No 161
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=81.54 E-value=1.3 Score=32.30 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=37.5
Q ss_pred HHHhhHhhc-CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC-CCCceeCcch
Q psy5605 48 ALARHIYMR-SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD-DGGRKITSHG 116 (152)
Q Consensus 48 SilRkiYl~-g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~-~gGR~lT~~G 116 (152)
.+|..|..+ ++ .+..++..+ .-|-..++++|++|.++|||+... .||-.|+..-
T Consensus 13 ~~L~~La~~~~~-s~~~IA~~~--------------~i~~~~l~kIl~~L~~aGlv~s~rG~GGy~Lar~p 68 (145)
T 1xd7_A 13 HILSLISMDEKT-SSEIIADSV--------------NTNPVVVRRMISLLKKADILTSRAGVPGASLKKDP 68 (145)
T ss_dssp HHHHHHHTCSCC-CHHHHHHHH--------------TSCHHHHHHHHHHHHHTTSEECCSSSSSCEESSCG
T ss_pred HHHHHHHhCCCC-CHHHHHHHH--------------CcCHHHHHHHHHHHHHCCceEeecCCCCceecCCH
Confidence 344444433 23 566677765 456789999999999999998655 5677776543
No 162
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=81.24 E-value=2.7 Score=34.20 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=43.2
Q ss_pred HHHHHHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcce-ecC
Q psy5605 43 YTRCAALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIE-KSD 106 (152)
Q Consensus 43 YiRaASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVe-k~~ 106 (152)
-.|-+..+-.+|-.+++++..|++.+| -|..-||+-|+.||+.|+|+ +..
T Consensus 6 ~~~~~~~ia~l~~~~~~~~~ela~~l~--------------vS~~tIrRdL~~l~~~G~v~iri~ 56 (315)
T 2w48_A 6 DIRLIVKIAQLYYEQDMTQAQIARELG--------------IYRTTISRLLKRGREQGIVTIAIN 56 (315)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCcEEEEec
Confidence 356677777889999999999999985 47899999999999999998 554
No 163
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=79.59 E-value=1.2 Score=34.96 Aligned_cols=41 Identities=27% Similarity=0.248 Sum_probs=34.0
Q ss_pred chhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCc
Q psy5605 60 GVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITS 114 (152)
Q Consensus 60 GV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~ 114 (152)
....|+..|| -|..-+|.+|+.|++.|+|+..++.|-.+++
T Consensus 31 se~~La~~~~--------------vSr~tvr~Al~~L~~~g~i~~~~g~G~~V~~ 71 (239)
T 3bwg_A 31 VLETLMAQFE--------------VSKSTITKSLELLEQKGAIFQVRGSGIFVRK 71 (239)
T ss_dssp CHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred CHHHHHHHHC--------------CCHHHHHHHHHHHHHCCcEEEeCCceEEEec
Confidence 5678888884 4789999999999999999998877766654
No 164
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=79.56 E-value=1.1 Score=35.64 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhHhh---cC-Cc-chhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcc
Q psy5605 42 FYTRCAALARHIYM---RS-PV-GVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSH 115 (152)
Q Consensus 42 ~YiRaASilRkiYl---~g-~v-GV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~ 115 (152)
.|.+.+..++.--. -| .+ ....|+..|| -|..-+|.+|+.|++.|+|+. +..|-.+++.
T Consensus 15 ~y~~i~~~l~~~I~~~~~g~~lPse~~La~~~~--------------vSr~tvr~Al~~L~~~G~i~~-~g~Gt~V~~~ 78 (248)
T 3f8m_A 15 KHQVVRAELDRMLDGMRIGDPFPAEREIAEQFE--------------VARETVRQALRELLIDGRVER-RGRTTVVARP 78 (248)
T ss_dssp HHHHHHHHHHHHHHHCCTTCBCCCHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEEE-ETTEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCCCcCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEe-CCCEEEEccC
Confidence 45555555544222 11 23 5677888874 578999999999999999999 8777666654
No 165
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=78.91 E-value=2.2 Score=34.81 Aligned_cols=71 Identities=8% Similarity=0.098 Sum_probs=51.8
Q ss_pred HHHHHHhhHhh---cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHH
Q psy5605 45 RCAALARHIYM---RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMD 121 (152)
Q Consensus 45 RaASilRkiYl---~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD 121 (152)
++=|++=.+++ -+.+.++.|-...+. --=|...+|.+|--|-+.||++... .|..||+.|++.++
T Consensus 4 ~arSlIlsll~g~~g~~i~~~~Li~l~~~-----------~Gi~e~avRtAlsRL~~~G~L~~~~-~GY~LT~~~~~~~~ 71 (247)
T 3kfw_X 4 TARSVVLSVLLGAHPAWATASELIQLTAD-----------FGIKETTLRVALTRMVGAGDLVRSA-DGYRLSDRLLARQR 71 (247)
T ss_dssp CHHHHHHHHHTTTTTSCBCHHHHHHHHTT-----------TTCCHHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHH
T ss_pred CCceeeEeeecCCCCCcccHHHHHHHHHH-----------cCCChHHHHHHHHHHHHcCCeeccC-CceeeCHHHHHHHH
Confidence 34456655543 245777777776632 2335678999999999999999876 47999999999888
Q ss_pred HHHHHH
Q psy5605 122 RIAAQI 127 (152)
Q Consensus 122 ~iA~~i 127 (152)
+....|
T Consensus 72 ~~~~rI 77 (247)
T 3kfw_X 72 RQDEAM 77 (247)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776654
No 166
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=78.82 E-value=1.1 Score=35.02 Aligned_cols=31 Identities=26% Similarity=0.528 Sum_probs=24.1
Q ss_pred HHHHHHhCCcceecC-CCC------ceeCcchHhhHHH
Q psy5605 92 ALQALEQVNIIEKSD-DGG------RKITSHGRRDMDR 122 (152)
Q Consensus 92 ~LQqLE~~glVek~~-~gG------R~lT~~G~~~LD~ 122 (152)
+|.+||+.|+|+... .+| -.||+.|+..+.+
T Consensus 54 ~l~~Le~~GlI~~~~~~~~rpektvY~ITe~Gr~~l~~ 91 (180)
T 2rkh_A 54 SIELLRYEGLVEAVDDGQGMEDDAMLAISAAGRRELHS 91 (180)
T ss_dssp CTHHHHHTTSEECCC--------CEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCeeeeecCCCCCccceeeeCHHHHHHHHH
Confidence 689999999997665 444 4799999999885
No 167
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=78.67 E-value=4 Score=33.04 Aligned_cols=57 Identities=19% Similarity=0.376 Sum_probs=42.1
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHH-HHHhCCcceecCCCCceeCcchHhhH
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQ-ALEQVNIIEKSDDGGRKITSHGRRDM 120 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQ-qLE~~glVek~~~gGR~lT~~G~~~L 120 (152)
.+-+.|-.+|+|+..++..+|-. ..-++.+.. .|..+|+|+..+. ||++|++|.+.|
T Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~--------------~~t~~~~~~~~l~~~g~i~~~~~-gr~~~~~~~~~~ 324 (334)
T 1in4_A 267 TIIEIYRGGPVGLNALAASLGVE--------------ADTLSEVYEPYLLQAGFLARTPR-GRIVTEKAYKHL 324 (334)
T ss_dssp HHHHHSTTCCBCHHHHHHHHTSC--------------HHHHHHHTHHHHHHTTSEEEETT-EEEECHHHHHHT
T ss_pred HHHHHhCCCcchHHHHHHHhCCC--------------cchHHHHHHHHHHHcCCeecccc-cHHhhHHHHHHh
Confidence 33334446789999999988642 122454444 8999999999995 999999998776
No 168
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=77.92 E-value=5 Score=28.59 Aligned_cols=67 Identities=4% Similarity=0.082 Sum_probs=48.6
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceec-----CC-CCce------eCcc
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKS-----DD-GGRK------ITSH 115 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~-----~~-gGR~------lT~~ 115 (152)
.|++.|--++++.+..|....| -|.+-++..|+.||+.|+|+.. +. -|+. ++..
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg--------------~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~ 72 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIR--------------IPKATLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKAK 72 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCcEEEEEeecCHHHhCCceEEEEEEEec
Confidence 4777777788999999999985 3567899999999999999862 21 2544 3544
Q ss_pred h-HhhHHHHHHHHH
Q psy5605 116 G-RRDMDRIAAQIR 128 (152)
Q Consensus 116 G-~~~LD~iA~~i~ 128 (152)
+ ...+++++..+.
T Consensus 73 ~~~~~~~~~~~~l~ 86 (150)
T 2pn6_A 73 YGKNYHVELGNKLA 86 (150)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred CChhHHHHHHHHHh
Confidence 4 566777776653
No 169
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=75.02 E-value=6.3 Score=27.28 Aligned_cols=41 Identities=17% Similarity=0.070 Sum_probs=33.4
Q ss_pred HHhhHhhcC--CcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcce
Q psy5605 49 LARHIYMRS--PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIE 103 (152)
Q Consensus 49 ilRkiYl~g--~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVe 103 (152)
|++.|+-.| ++-...|++.-+ =+-..+-+||+.||+.|||.
T Consensus 25 Vl~~I~~~g~~gi~qkeLa~~~~--------------l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 25 VYQIIEDAGNKGIWSRDVRYKSN--------------LPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCcCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEE
Confidence 777888844 788889998753 34577999999999999998
No 170
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=74.96 E-value=2.8 Score=27.16 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=39.7
Q ss_pred HHHHhhHhhc--CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCC
Q psy5605 47 AALARHIYMR--SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDD 107 (152)
Q Consensus 47 ASilRkiYl~--g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~ 107 (152)
..|+.-|.-. +++.+..|....... + | .-|-+-++..|+.||+.|+|.+...
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~---~--~----~is~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDM---G--E----EIGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHT---T--C----CCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHh---C--C----CCCHhhHHHHHHHHHHCCCeEEEee
Confidence 4677777654 689999999887321 1 1 3467889999999999999998764
No 171
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=73.67 E-value=1.5 Score=32.32 Aligned_cols=34 Identities=35% Similarity=0.473 Sum_probs=26.9
Q ss_pred cchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC
Q psy5605 59 VGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD 106 (152)
Q Consensus 59 vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~ 106 (152)
+....|...| +=.||+.|.+|++||+-|+|....
T Consensus 60 ITpsvlseRl--------------kI~gSLAR~aLreL~~kGlIk~V~ 93 (108)
T 3u5c_Z 60 VSVSVLVDRL--------------KIGGSLARIALRHLEKEGIIKPIS 93 (108)
T ss_dssp BSHHHHHHTT--------------CCCTTHHHHHHHHHSSSSSCEEEE
T ss_pred EeHHHhhhhh--------------hhhHHHHHHHHHHHHHCCCEEEEe
Confidence 5556666665 456899999999999999998665
No 172
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=73.21 E-value=9.2 Score=28.30 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHHhC---CcceecCC----CCceeCcchHhhHHHHHH
Q psy5605 85 SGSVARKALQALEQV---NIIEKSDD----GGRKITSHGRRDMDRIAA 125 (152)
Q Consensus 85 sg~iiR~~LQqLE~~---glVek~~~----gGR~lT~~G~~~LD~iA~ 125 (152)
|-+-+=..+++||+. .|++.... +|=.||+.|+.+++..-.
T Consensus 51 SqsavS~~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll~~a~~ 98 (135)
T 2ijl_A 51 SYRRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLERYRG 98 (135)
T ss_dssp CHHHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHHHHHHH
Confidence 335566678999995 78888763 477899999999986543
No 173
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=73.00 E-value=9.7 Score=28.32 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHhCCcceecCC---C-C------ceeCcchHh--hHHHHH
Q psy5605 85 SGSVARKALQALEQVNIIEKSDD---G-G------RKITSHGRR--DMDRIA 124 (152)
Q Consensus 85 sg~iiR~~LQqLE~~glVek~~~---g-G------R~lT~~G~~--~LD~iA 124 (152)
|-+-+=-+|..||+.|+|+.... + . -.||++|+. .+...-
T Consensus 53 s~gtlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~~~~~~~~~ 104 (122)
T 1bm9_A 53 NHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLK 104 (122)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESCHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEChhhhhHHHHHHHH
Confidence 33456678999999999975432 2 2 369999999 444433
No 174
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=72.81 E-value=1.5 Score=32.36 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=20.7
Q ss_pred CCchhHHHHHHHHHHhCCcceecC
Q psy5605 83 RSSGSVARKALQALEQVNIIEKSD 106 (152)
Q Consensus 83 ~asg~iiR~~LQqLE~~glVek~~ 106 (152)
+=.||+.|.+|++||+-|+|....
T Consensus 71 kI~gSLAR~aLreL~~kGlIk~V~ 94 (108)
T 3iz6_V 71 RINGSLARQAIKDLESRGAIRVVS 94 (108)
T ss_dssp HTCCHHHHHHHHHHHHHHTSCEEC
T ss_pred cccHHHHHHHHHHHHHCCCEEEEe
Confidence 346899999999999999998665
No 175
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=72.25 E-value=22 Score=26.44 Aligned_cols=66 Identities=11% Similarity=0.222 Sum_probs=48.7
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceec-----CC-CCc-------eeCc
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKS-----DD-GGR-------KITS 114 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~-----~~-gGR-------~lT~ 114 (152)
.|++.|.-++++....|.+..| -|.+-++..|+.||+.|+|+.. +. -|+ .+++
T Consensus 21 ~IL~~L~~~~~~s~~eLA~~lg--------------lS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~ 86 (171)
T 2ia0_A 21 NILRLLKKDARLTISELSEQLK--------------KPESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGK 86 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEESC
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEECC
Confidence 4787788889999999999985 3567899999999999999742 22 254 3455
Q ss_pred c-----hHhhHHHHHHHH
Q psy5605 115 H-----GRRDMDRIAAQI 127 (152)
Q Consensus 115 ~-----G~~~LD~iA~~i 127 (152)
. ....+|.++..+
T Consensus 87 ~~~~~f~~~~~~~~~~~l 104 (171)
T 2ia0_A 87 PVIEDFLERYISYISSTL 104 (171)
T ss_dssp C--CHHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHH
Confidence 5 444677776655
No 176
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=71.74 E-value=13 Score=26.45 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=49.4
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCccee-----cCC-CCce------eCcc
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEK-----SDD-GGRK------ITSH 115 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek-----~~~-gGR~------lT~~ 115 (152)
.|++.|.-++++.+..|....| -|.+-++..|+.||+.|+|.. ++. -|+. ++-.
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg--------------~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~ 77 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFG--------------VSPETIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILK 77 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHT--------------SCHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCCEEEEEEEEES
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHcCCcceEEEecCHHHcCCeEEEEEEEEEC
Confidence 5787777789999999999985 356889999999999999985 232 3654 3444
Q ss_pred hHhhHHHHHHHHH
Q psy5605 116 GRRDMDRIAAQIR 128 (152)
Q Consensus 116 G~~~LD~iA~~i~ 128 (152)
....+|.++..+.
T Consensus 78 ~~~~~~~~~~~l~ 90 (152)
T 2cg4_A 78 SAKDYPSALAKLE 90 (152)
T ss_dssp SGGGHHHHHHHHH
T ss_pred CCCCHHHHHHHHh
Confidence 4446777776653
No 177
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=70.53 E-value=5.4 Score=30.29 Aligned_cols=21 Identities=29% Similarity=0.684 Sum_probs=16.5
Q ss_pred CCchHHHHHHHHHhhHhhcCCcchhhHH
Q psy5605 38 DPDWFYTRCAALARHIYMRSPVGVKTVT 65 (152)
Q Consensus 38 d~DW~YiRaASilRkiYl~g~vGV~~L~ 65 (152)
+.||-++| =|||||+|--+..
T Consensus 49 ~~~W~~~R-------n~IhGPlg~lr~~ 69 (133)
T 3ls0_A 49 DQNWVDTQ-------TYIHGPLGQLRRD 69 (133)
T ss_dssp TTCHHHHH-------HHHHTTTTTHHHH
T ss_pred hcchHHHH-------HHHhchHHHHHHH
Confidence 57999999 6999998864443
No 178
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=70.46 E-value=6.7 Score=30.51 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=36.2
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD 106 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~ 106 (152)
.||..| ..+|..+..|....| -|.+-+-..|+.||+.|||+...
T Consensus 19 ~IL~~L-~~~~~s~~eLa~~l~--------------is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 19 RILFLL-TKRPYFVSELSRELG--------------VGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHH-HHSCEEHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH-HhCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCceEEEe
Confidence 466666 479999999999984 56788999999999999998654
No 179
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=70.07 E-value=3 Score=35.73 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=42.4
Q ss_pred hhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHHHHH
Q psy5605 54 YMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAAQIR 128 (152)
Q Consensus 54 Yl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA~~i~ 128 (152)
-...++-...+...||-.-. .. -.. .-..|++|++.|||+.+. +.=+||++|+-.+|.|+....
T Consensus 378 r~~~g~~~~~~~~~~g~~~~-----~~----~~~-~~~~l~~~~~~gll~~~~-~~~~lT~~G~~~~~~i~~~f~ 441 (457)
T 1olt_A 378 ICNFRLDYSPIEQQWDLLFA-----DY----FAE-DLKLLAPLAKDGLVDVDE-KGIQVTAKGRLLIRNICMCFD 441 (457)
T ss_dssp HHHSEEEHHHHHHHTTCCHH-----HH----THH-HHHHHHHHHHTTSEEECS-SEEEECTTTGGGHHHHHHTTC
T ss_pred HHcCCCCHHHHHHHhCCCHH-----HH----HHH-HHHHHHHHHHCCCEEEEC-CEEEECHhhHHHHHHHHHHHH
Confidence 34456666677766643200 00 011 113478899999999776 467899999999999998763
No 180
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=69.61 E-value=3.2 Score=33.35 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=33.3
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCccee
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEK 104 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek 104 (152)
.|++.|. .+|..+..|+...| -|.+-+.+.|+.||++|||+.
T Consensus 16 ~IL~~L~-~g~~s~~ELa~~lg--------------lS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 16 DLLSHLT-CMECYFSLLSSKVS--------------VSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHT-TTTTCSSSSCTTCC--------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEE
Confidence 4777666 58888877777643 466889999999999999987
No 181
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=69.28 E-value=16 Score=27.25 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHHHHHHHHHHHHHH
Q psy5605 87 SVARKALQALEQ---VNIIEKSDDGGRKITSHGRRDMDRIAAQIRVSKKEAAL 136 (152)
Q Consensus 87 ~iiR~~LQqLE~---~glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~~~~~~ 136 (152)
+-+=+.+++||+ ..|++.+. .|=.||+.|+.+++.+ .++...+.+...
T Consensus 32 ~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a-~~il~~~~~~~~ 82 (306)
T 3hhg_A 32 SAVSRIVKRLEEKLGVNLLNRTT-RQLSLTEEGAQYFRRA-QRILQEMAAAET 82 (306)
T ss_dssp HHHHHHHHHHHHHHTSCCEETTS-SSCEECHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEeecC-CCeeECHhHHHHHHHH-HHHHHHHHHHHH
Confidence 455667899998 46777766 5899999999998764 555555544433
No 182
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=69.13 E-value=1.1 Score=35.42 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=6.6
Q ss_pred CchhHHHHHHHHHHhCCcceecCCCCceeCcch
Q psy5605 84 SSGSVARKALQALEQVNIIEKSDDGGRKITSHG 116 (152)
Q Consensus 84 asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G 116 (152)
-|..-+|.+|+.|++.|+|+..+..|-.+++..
T Consensus 52 vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~~ 84 (247)
T 2ra5_A 52 LSRPTVRQAIQSLVDKGLLVRRRGVGTQVVHSK 84 (247)
T ss_dssp ----------------CEEEEEC----------
T ss_pred cCHHHHHHHHHHHHHCCCEEEEcCceeEEeccc
Confidence 467889999999999999999887787776543
No 183
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=68.36 E-value=8.3 Score=31.79 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=46.4
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDR 122 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~ 122 (152)
.++|.| ++|..+..|...+|- +-..++..|+.|..+|+++... |-.+|+.+...|.+
T Consensus 47 ~ll~~L--~~~~t~~eLa~~~g~--------------~~~~v~~~L~~l~~~gll~~~~--~~~lt~~~~~~l~~ 103 (373)
T 2qm3_A 47 NVLSAV--LASDDIWRIVDLSEE--------------PLPLVVAILESLNELGYVTFED--GVKLTEKGEELVAE 103 (373)
T ss_dssp HHHHHH--HHCSCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEECSS--SSEECHHHHHHHHH
T ss_pred HHHHHh--cCCCCHHHHHHHhCC--------------ChHHHHHHHHHHhhCCcEEECC--CEEECHHHHHHHHh
Confidence 357777 788999999988753 3467999999999999998755 49999999877766
No 184
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=68.29 E-value=8.1 Score=26.05 Aligned_cols=59 Identities=12% Similarity=0.226 Sum_probs=43.9
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCC---ceeCcchHhhHH
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGG---RKITSHGRRDMD 121 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gG---R~lT~~G~~~LD 121 (152)
.|++.+.-+|+..+..|....|- |.+-+.+-|+.||++ +|+...+|. -.||+.+...+-
T Consensus 31 ~IL~~l~~~~~~~~~ela~~l~i--------------s~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~~ 92 (99)
T 2zkz_A 31 KIVNELYKHKALNVTQIIQILKL--------------PQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGII 92 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTC--------------CHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHHH
Confidence 46666667899999999998743 557788889999999 998766432 346777765443
No 185
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=67.34 E-value=4.6 Score=30.56 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=16.7
Q ss_pred CCCchHHHHHHHHHhhHhhcCCcchhhHH
Q psy5605 37 YDPDWFYTRCAALARHIYMRSPVGVKTVT 65 (152)
Q Consensus 37 ~d~DW~YiRaASilRkiYl~g~vGV~~L~ 65 (152)
.+.||-++| =|||||+|--+..
T Consensus 45 ~~~~W~~~R-------n~IhGPlg~lr~~ 66 (130)
T 3zsu_A 45 AKGDWQEAR-------NIMRGPLGEMLMD 66 (130)
T ss_dssp HTTCHHHHH-------HHHHTHHHHHHHH
T ss_pred hhcchHHHH-------HHHhchHHHHHHH
Confidence 356999999 6899998764443
No 186
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=67.30 E-value=3.1 Score=32.14 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=27.6
Q ss_pred cchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC
Q psy5605 59 VGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD 106 (152)
Q Consensus 59 vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~ 106 (152)
|.+..|...| +=+||+.|.+|+.||+-|+|...-
T Consensus 64 ITpsvlseRl--------------kI~gSLARkaLreL~~kGlIk~V~ 97 (143)
T 2xzm_8 64 LTVSTVVEKL--------------KVNGSLARQLMRTMADRKLVEKVA 97 (143)
T ss_dssp ECHHHHHHHH--------------CBCHHHHHHHHHHHHHTTSEEEEE
T ss_pred ecHHHHHHHh--------------cchHHHHHHHHHHHHHCCCEEEEe
Confidence 5667777776 457899999999999999997554
No 187
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=65.72 E-value=16 Score=26.83 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHHHHHHHHHHHHH
Q psy5605 87 SVARKALQALEQ---VNIIEKSDDGGRKITSHGRRDMDRIAAQIRVSKKEAA 135 (152)
Q Consensus 87 ~iiR~~LQqLE~---~glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~~~~~ 135 (152)
+-+=+.+++||+ ..|.+.+. +|=.||+.|+.+++.+ .++.....+..
T Consensus 30 ~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a-~~~l~~~~~~~ 79 (291)
T 3szp_A 30 ATITRRIQALEDSLNLRLLNRHA-RKLTLTEAGERFYKDC-SPLLERLASMT 79 (291)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEET-TEEEECHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCceEeecC-CCcccCHhHHHHHHHH-HHHHHHHHHHH
Confidence 344556789998 46788776 5899999999999764 45555544443
No 188
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=64.90 E-value=16 Score=27.16 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhC---CcceecCCCCceeCcchHhhHHHHHHHHHHHHH
Q psy5605 87 SVARKALQALEQV---NIIEKSDDGGRKITSHGRRDMDRIAAQIRVSKK 132 (152)
Q Consensus 87 ~iiR~~LQqLE~~---glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~~ 132 (152)
+-+=+.+++||+. .|++.+. .|=.||+.|+.+++.+ .++.....
T Consensus 30 ~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a-~~~l~~~~ 76 (294)
T 1ixc_A 30 PPITRQMQALEADLGVVLLERSH-RGIELTAAGHAFLEDA-RRILELAG 76 (294)
T ss_dssp HHHHHHHHHHHHHHTSCCBC------CCBCHHHHHHHHHH-HHHHHHHH
T ss_pred chHHHHHHHHHHHHCCEEEEeCC-CCeeECHhHHHHHHHH-HHHHHHHH
Confidence 4455677999984 7777765 5889999999998764 44544443
No 189
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=64.49 E-value=7 Score=29.32 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=26.4
Q ss_pred HHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHHHHHHHHHHHHH
Q psy5605 89 ARKALQALEQ---VNIIEKSDDGGRKITSHGRRDMDRIAAQIRVSKKEAA 135 (152)
Q Consensus 89 iR~~LQqLE~---~glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~~~~~ 135 (152)
+=+.+++||+ ..|++.+...|=.||+.|+.+++. |.++.....+..
T Consensus 35 vS~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~-a~~~l~~~~~~~ 83 (306)
T 3fzv_A 35 ISTAVKGLEESFGVQLFIRHHAQGVSLTPAGARFYRK-AQELLRMAHEFE 83 (306)
T ss_dssp HHHHHHHHHHHC-CCCC---------CCHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCeeEeecCCCCceECHhHHHHHHH-HHHHHHHHHHHH
Confidence 4456789998 357776522588999999999987 556665554443
No 190
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=63.99 E-value=11 Score=26.13 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=34.3
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD 106 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~ 106 (152)
.||.-|.-+| ..+..|++..| =|.+-+|.-|..||+.|+|.+..
T Consensus 21 ~IL~lL~~~g-~sa~eLAk~Lg--------------iSk~aVr~~L~~Le~eG~I~~~~ 64 (82)
T 1oyi_A 21 EAIKTIGIEG-ATAAQLTRQLN--------------MEKREVNKALYDLQRSAMVYSSD 64 (82)
T ss_dssp HHHHHHSSST-EEHHHHHHHSS--------------SCHHHHHHHHHHHHHHTSSEECS
T ss_pred HHHHHHHHcC-CCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEeCC
Confidence 4454444344 99999999875 46688999999999999998865
No 191
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=62.91 E-value=23 Score=26.72 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHHHHHHHHH
Q psy5605 87 SVARKALQALEQ---VNIIEKSDDGGRKITSHGRRDMDRIAAQIRVSK 131 (152)
Q Consensus 87 ~iiR~~LQqLE~---~glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~ 131 (152)
+-+=+.+++||+ ..|.+.+. .|=.||+.|+.+++.+ .++...+
T Consensus 31 ~avS~~i~~LE~~lg~~Lf~R~~-r~~~lT~~G~~l~~~a-~~~l~~~ 76 (305)
T 3fxq_A 31 PALSAAIQQLEDELKAPLLVRTK-RGVSLTSFGQAFMKHA-RLIVTES 76 (305)
T ss_dssp HHHHHHHHHHHHHHTSCSEEECS-SSEEECHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEEecC-CCccCCHhHHHHHHHH-HHHHHHH
Confidence 455667899998 46777776 5889999999998764 4444433
No 192
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=61.81 E-value=56 Score=25.64 Aligned_cols=90 Identities=11% Similarity=0.092 Sum_probs=62.9
Q ss_pred CchHHHHHHHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHh
Q psy5605 39 PDWFYTRCAALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRR 118 (152)
Q Consensus 39 ~DW~YiRaASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~ 118 (152)
.|=..-|-..|++-+- +|++.+..+.+.-|= |=+-++++|.+||+.|+|++.+-|-+.+=--
T Consensus 6 Td~v~erk~~ILE~Lk-~G~~~t~~Iak~LGl--------------Shg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L--- 67 (165)
T 2vxz_A 6 SREVLVRLRDILALLA-DGCKTTSLIQQRLGL--------------SHGRAKALIYVLEKEGRVTRVAFGNVALVCL--- 67 (165)
T ss_dssp CHHHHHHHHHHHHHHT-TCCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSCEEEEETTEEEEES---
T ss_pred hHHHHHHHHHHHHHHH-hCCccHHHHHHHhCC--------------cHHHHHHHHHHHHhcCceEEEEEccEEEEEe---
Confidence 3556678888998887 999999999999753 4578999999999999999888543322111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCceee
Q psy5605 119 DMDRIAAQIRVSKKEAALQALAAQGITVV 147 (152)
Q Consensus 119 ~LD~iA~~i~~~~~~~~~~~~~~~~~~~~ 147 (152)
+.|. ..+-+.+..++-...|.+.|...+
T Consensus 68 ~~s~-y~~kV~dilrel~~~l~s~gvk~i 95 (165)
T 2vxz_A 68 SMDQ-YRQLVDGMIREVERLVTTNKLKFI 95 (165)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHcCCeee
Confidence 1112 222444555566677888887654
No 193
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=61.40 E-value=4.3 Score=32.12 Aligned_cols=49 Identities=14% Similarity=0.337 Sum_probs=34.5
Q ss_pred CcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHH-HHHhCCcceecCCCCceeCcchHhhHH
Q psy5605 58 PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQ-ALEQVNIIEKSDDGGRKITSHGRRDMD 121 (152)
Q Consensus 58 ~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQ-qLE~~glVek~~~gGR~lT~~G~~~LD 121 (152)
++++..+....|- +.+-+...++ -|.+.|+|...+ .||++|++|...|.
T Consensus 279 ~~~~~~~a~~lg~--------------~~~tl~~~l~~~l~~~gli~~~~-~g~~~t~~~~~~~~ 328 (338)
T 3pfi_A 279 PIGLASIAAALSE--------------DENTIEDVIEPYLLANGYIERTA-KGRIASAKSYSALK 328 (338)
T ss_dssp CBCHHHHHHHTTC--------------CHHHHHHTTHHHHHHTTSEEEET-TEEEECHHHHHHHH
T ss_pred CchHHHHHHHhCC--------------CHHHHHHHHhHHHHHcCceecCC-CcccccHHHHHHhc
Confidence 4556666666542 2344444444 888999999887 59999999998885
No 194
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=60.26 E-value=14 Score=27.71 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=29.9
Q ss_pred CcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCcee
Q psy5605 58 PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKI 112 (152)
Q Consensus 58 ~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~l 112 (152)
|..+..|+..+|=. +.+ ++..|+.||+.|+|+.++.+.|.|
T Consensus 24 ~~s~~eia~~lgl~-------------~~t-v~~~l~~Le~~G~i~~~~~~~r~i 64 (196)
T 3k2z_A 24 PPSVREIARRFRIT-------------PRG-ALLHLIALEKKGYIERKNGKPRAL 64 (196)
T ss_dssp CCCHHHHHHHHTSC-------------HHH-HHHHHHHHHHTTSEECC---TTCC
T ss_pred CCCHHHHHHHcCCC-------------cHH-HHHHHHHHHHCCCEEecCCCcceE
Confidence 78999999998653 223 788899999999999887544433
No 195
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=58.48 E-value=19 Score=25.53 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=36.2
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCccee
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEK 104 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek 104 (152)
.||+.|.-++++.+..|+...|- |.+-++..|+.||+.|+|+.
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAGL--------------SVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEE
Confidence 47777777899999999999853 56788999999999999974
No 196
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=57.27 E-value=19 Score=27.16 Aligned_cols=42 Identities=21% Similarity=0.103 Sum_probs=32.7
Q ss_pred CchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHHHHHHHHHHHH
Q psy5605 84 SSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAAQIRVSKKEAA 135 (152)
Q Consensus 84 asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~~~~~ 135 (152)
....-|.++|+| .+++- .||++....||.+.++|++.+..++
T Consensus 37 sy~~YIyKVLKQ--------Vhpd~--gISskAm~ImnSfvnDiferIA~EA 78 (126)
T 1tzy_B 37 SYSIYVYKVLKQ--------VHPDT--GISSKAMGIMNSFVNDIFERIAGEA 78 (126)
T ss_dssp CCHHHHHHHHHH--------HCTTC--EECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH--------hCCCC--CcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578889988 36643 5999999999999999998775443
No 197
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=56.24 E-value=22 Score=25.18 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=36.5
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCccee
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEK 104 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek 104 (152)
.|++.|.-++++.+..|+...| -|.+-++..|+.||+.|+|+.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg--------------~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIK--------------LSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeEE
Confidence 4777777789999999999984 356788999999999999984
No 198
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=56.14 E-value=23 Score=23.90 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=34.9
Q ss_pred HHhhHhhcC---CcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC
Q psy5605 49 LARHIYMRS---PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD 106 (152)
Q Consensus 49 ilRkiYl~g---~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~ 106 (152)
|+.-|--.+ ++.+..|++..| -|.+-++..|..||+.|+|+...
T Consensus 15 IL~~L~~~~pg~~~t~~eLA~~Lg--------------vsr~tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLG--------------TPKKEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEecC
Confidence 555555567 788999999986 34577999999999999998754
No 199
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=55.81 E-value=22 Score=25.61 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=48.3
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC-----C-CCce--------eC
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD-----D-GGRK--------IT 113 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~-----~-gGR~--------lT 113 (152)
.|++.|.-++++.+..|+...| -|.+-++..|+.||+.|+|+... . -|.. ++
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg--------------~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~ 79 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVA--------------LSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIR 79 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEeeecccCChHHhcccEEEEEEEEEc
Confidence 5888888889999999999985 35678899999999999998521 1 2443 24
Q ss_pred cchHhhHHHHHHHH
Q psy5605 114 SHGRRDMDRIAAQI 127 (152)
Q Consensus 114 ~~G~~~LD~iA~~i 127 (152)
+.. ..++.++..+
T Consensus 80 ~~~-~~~~~~~~~l 92 (162)
T 2p5v_A 80 KAK-DAREDFAASV 92 (162)
T ss_dssp SST-THHHHHHHHH
T ss_pred CCc-hHHHHHHHHH
Confidence 544 5677777765
No 200
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=55.68 E-value=23 Score=28.95 Aligned_cols=58 Identities=12% Similarity=0.022 Sum_probs=45.2
Q ss_pred HHHHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcce-ecCCCCceeCcch
Q psy5605 45 RCAALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIE-KSDDGGRKITSHG 116 (152)
Q Consensus 45 RaASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVe-k~~~gGR~lT~~G 116 (152)
|-..|++.|--.+++.+..|+..+| -|..-||+-|+.||+.|++. ..+..|..|.+..
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~--------------vS~~ti~r~l~~L~~~G~~i~~~~g~GY~l~~~~ 64 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLG--------------MSRAAINKHIQTLRDWGVDVFTVPGKGYSLPEPI 64 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHT--------------SCHHHHHHHHHHHHHTTCCCEEETTTEEECSSCC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHC--------------CCHHHHHHHHHHHHhCCCcEEEecCCCcEEeecc
Confidence 5567887776667899999999984 56788999999999999985 4454577776543
No 201
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=52.05 E-value=22 Score=25.34 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=37.1
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCccee
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEK 104 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek 104 (152)
.|++.|.-++++.+..|....| -|.+-++..|+.||+.|+|+.
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg--------------~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITG--------------LAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHC--------------SCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeEE
Confidence 5788787889999999999985 356789999999999999975
No 202
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=51.58 E-value=44 Score=25.63 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=26.6
Q ss_pred HHHHHHHh---CCcceecCC----CCceeCcchHhhHHHHHHHHHHHH
Q psy5605 91 KALQALEQ---VNIIEKSDD----GGRKITSHGRRDMDRIAAQIRVSK 131 (152)
Q Consensus 91 ~~LQqLE~---~glVek~~~----gGR~lT~~G~~~LD~iA~~i~~~~ 131 (152)
..+++||+ ..|++..+. +|..||+.|+.++...- ++..++
T Consensus 53 ~~i~~le~~lg~~L~~R~~~~lsg~~~~lt~~g~~l~~~~~-~~~~~~ 99 (265)
T 1b9m_A 53 DAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYD-LLAQIQ 99 (265)
T ss_dssp HHHHHHHHHHTSCCEEECCCC-----EEECHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhCCCeEEecCCCCCCCceEECHHHHHHHHHHH-HHHHHH
Confidence 34677776 368888874 58999999999997643 443333
No 203
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=50.46 E-value=25 Score=24.87 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=36.6
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCccee
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEK 104 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek 104 (152)
.|++.|.-++++....|....| -|.+-++..++.||+.|+|..
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg--------------~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILN--------------TTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTT--------------SCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEE
Confidence 5787787889999999999875 356788999999999999984
No 204
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=49.73 E-value=27 Score=26.26 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHHHHHHHHH
Q psy5605 87 SVARKALQALEQ---VNIIEKSDDGGRKITSHGRRDMDRIAAQIRVSK 131 (152)
Q Consensus 87 ~iiR~~LQqLE~---~glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~ 131 (152)
+-+=+.+++||+ ..|.+.+ . |-.||+.|+.+++... ++....
T Consensus 35 ~avS~~i~~LE~~lg~~Lf~R~-~-~~~lT~~G~~l~~~a~-~~l~~~ 79 (303)
T 3isp_A 35 SAVSQRIKSLEQQVGQVLVVRE-K-PCRATTAGIPLLRLAA-QTALLE 79 (303)
T ss_dssp HHHHHHHHHHHHHHTSCCEECS-S-SCEECGGGHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEEcC-C-CCeeCchHHHHHHHHH-HHHHHH
Confidence 445567799998 4777776 4 8999999999998754 444433
No 205
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=49.37 E-value=38 Score=30.03 Aligned_cols=76 Identities=8% Similarity=0.042 Sum_probs=54.9
Q ss_pred HHHHHhhHh----hcCCcchhhHHHHhCCCCCCCCCC-Cc-cCCCchhHHHHHHHHHHhCCcceecCC--C-C----cee
Q psy5605 46 CAALARHIY----MRSPVGVKTVTKIFGGRKRNGVCP-SH-FCRSSGSVARKALQALEQVNIIEKSDD--G-G----RKI 112 (152)
Q Consensus 46 aASilRkiY----l~g~vGV~~L~~~YGg~krrG~~P-~h-~~~asg~iiR~~LQqLE~~glVek~~~--g-G----R~l 112 (152)
|-.++.-|| ..+..|++.+...+-|+++.-++- .| ...-+..-++.++.||-..|+++.+.. . + =.|
T Consensus 446 ~~~~l~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 525 (591)
T 2v1x_A 446 CRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKI 525 (591)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHTTCSCGGGCCTTCCCCSCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHhCCCchHHHhcCCCcCcCCHHHHHHHHHHHHHcCCcEEecccCCCceeEEeeE
Confidence 444555555 578899999999998876654442 22 245567789999999999999987542 1 2 258
Q ss_pred CcchHhhHH
Q psy5605 113 TSHGRRDMD 121 (152)
Q Consensus 113 T~~G~~~LD 121 (152)
|++|+..|.
T Consensus 526 ~~~~~~~~~ 534 (591)
T 2v1x_A 526 GPKANLLNN 534 (591)
T ss_dssp CGGGGGGGS
T ss_pred CHHHHHHhc
Confidence 999988764
No 206
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=46.21 E-value=17 Score=30.48 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=22.3
Q ss_pred CCchhHHHHHHHHHHhCCcceecCCCCce
Q psy5605 83 RSSGSVARKALQALEQVNIIEKSDDGGRK 111 (152)
Q Consensus 83 ~asg~iiR~~LQqLE~~glVek~~~gGR~ 111 (152)
.-|..-+|+.|++|++.|++++.. .||.
T Consensus 322 gvS~~Ta~r~L~~L~e~GiL~~~~-~gR~ 349 (373)
T 2qc0_A 322 LAKRQTASVYLKQLCDIGVLEEVQ-SGKE 349 (373)
T ss_dssp SSCHHHHHHHHHHHHHTTSCEEC---CCS
T ss_pred CCCHHHHHHHHHHHHHCCcEEEec-CCCc
Confidence 457788999999999999999875 4664
No 207
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=45.82 E-value=40 Score=25.15 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=44.7
Q ss_pred HHHHHHHhhHhhc-CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCc-ceecCCCCceeCcch
Q psy5605 44 TRCAALARHIYMR-SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNI-IEKSDDGGRKITSHG 116 (152)
Q Consensus 44 iRaASilRkiYl~-g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~gl-Vek~~~gGR~lT~~G 116 (152)
-|--.|++.|.-+ +++.+..|+..+| -|..-||.=++.||+.|+ |.... +|..|++..
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~--------------vS~~Ti~rdi~~L~~~G~~I~~~~-~Gy~l~~~~ 80 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELS--------------VSRQVIVQDIAYLRSLGYNIVATP-RGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHT--------------SCHHHHHHHHHHHHHHTCCCEEET-TEEECCTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeEEEEC-CEEEECCcc
Confidence 3566777766654 5699999999984 567888999999999999 87654 677777653
No 208
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=45.75 E-value=20 Score=27.02 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHHHHHHHHHHHH
Q psy5605 87 SVARKALQALEQ---VNIIEKSDDGGRKITSHGRRDMDRIAAQIRVSKKEA 134 (152)
Q Consensus 87 ~iiR~~LQqLE~---~glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~~~~ 134 (152)
+-+=+.+++||+ ..|.+.+. .|=.||+.|+.+++.. .++.....+.
T Consensus 39 ~avS~~I~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a-~~~l~~~~~~ 87 (310)
T 2esn_A 39 SAFSHALGRLRQGLDDELFLRQG-NRMQPTQRAEHLAAAV-AAALRALGEG 87 (310)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEET-TEEEECHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCcceeecC-CCccccHHHHHHHHHH-HHHHHHHHhh
Confidence 445566799998 37777776 5889999999988764 5555554443
No 209
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=44.09 E-value=29 Score=27.66 Aligned_cols=50 Identities=6% Similarity=0.159 Sum_probs=39.8
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeC
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKIT 113 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT 113 (152)
++=.++.+|+..+..|+... ..+.+.++..|..|++.|+|++..+ |++.-
T Consensus 169 ~l~~~l~~~~~t~~~la~~~--------------~l~~~~V~~~l~~L~~~~~v~~~~~-~~~~~ 218 (232)
T 2qlz_A 169 ILHYLLLNGRATVEELSDRL--------------NLKEREVREKISEMARFVPVKIIND-NTVVL 218 (232)
T ss_dssp HHHHHHHSSEEEHHHHHHHH--------------TCCHHHHHHHHHHHTTTSCEEEETT-TEEEE
T ss_pred HHHHHHhcCCCCHHHHHHHh--------------CcCHHHHHHHHHHHHhcCCeEEecC-CeEEe
Confidence 34445678999999999987 4677999999999999999996664 55543
No 210
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=44.04 E-value=57 Score=25.97 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=37.8
Q ss_pred cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCC--CceeCcchH
Q psy5605 56 RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDG--GRKITSHGR 117 (152)
Q Consensus 56 ~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~g--GR~lT~~G~ 117 (152)
.||+.+..|....|- +-..++..|..|..+|+++...++ .-.+|+.+.
T Consensus 47 ~~~~t~~eLA~~~g~--------------~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~t~~s~ 96 (374)
T 1qzz_A 47 AGADTLAGLADRTDT--------------HPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGM 96 (374)
T ss_dssp TTCCSHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEECCCC-CCCCEECTTGG
T ss_pred CCCCCHHHHHHHhCc--------------CHHHHHHHHHHHhhCCCEEEeCCCCeEEEEChHHH
Confidence 589999999998754 346799999999999999986555 567777654
No 211
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=42.22 E-value=25 Score=29.85 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=31.5
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCce
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRK 111 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~ 111 (152)
++..++-++-+.++.+.+.. ..|..-+++.|++|+++|++++.. +||.
T Consensus 302 ll~~l~~~p~~t~~~~~~~~--------------~~S~~TA~r~L~~L~e~GiL~~~~-~gR~ 349 (373)
T 3eqx_A 302 LVQVIFEQPYCRIQNLVESG--------------LAKRQTASVYLKQLCDIGVLEEVQ-SGKE 349 (373)
T ss_dssp HHHHHHHCSEEEHHHHHHTS--------------SSCHHHHHHHHHHHHHTTSCEEC---CCS
T ss_pred HHHHHHHCCCccHHHHHHHh--------------CcCHHHHHHHHHHHHHCCcEEEeC-CCCc
Confidence 44444445555555555543 345667899999999999999876 4554
No 212
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=41.46 E-value=41 Score=22.10 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=34.4
Q ss_pred HHHhhHhhcC---CcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC
Q psy5605 48 ALARHIYMRS---PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD 106 (152)
Q Consensus 48 SilRkiYl~g---~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~ 106 (152)
.|+.-|.-.+ ++.+..|++..|= |.+-++..|..||+.|+|+...
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgv--------------s~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGT--------------PKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCC--------------CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEecC
Confidence 3555555567 7889999998852 3467889999999999998754
No 213
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=41.19 E-value=49 Score=26.30 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=38.5
Q ss_pred cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchH
Q psy5605 56 RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGR 117 (152)
Q Consensus 56 ~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~ 117 (152)
.+|..++.|....|- +...++..|..|..+|+++...++...+|+.+.
T Consensus 50 ~~~~t~~ela~~~~~--------------~~~~l~r~L~~L~~~g~~~~~~~g~y~~t~~s~ 97 (360)
T 1tw3_A 50 AGARTVKALAARTDT--------------RPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGE 97 (360)
T ss_dssp TTCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEETTEEEECTTGG
T ss_pred CCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHHCCCEEecCCCeEEeCHHHH
Confidence 589999999998754 347899999999999999886555567777654
No 214
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=41.19 E-value=45 Score=24.69 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=37.1
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCccee
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEK 104 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek 104 (152)
.|++.|.-++.+.+..|....| -|.+-++.-|+.||+.|+|+.
T Consensus 31 ~IL~~L~~~~~~s~~eLA~~lg--------------lS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 31 KIIKILQNDGKAPLREISKITG--------------LAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeEe
Confidence 5888888889999999999985 356778999999999999975
No 215
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A
Probab=39.98 E-value=32 Score=28.12 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=12.1
Q ss_pred hhhhcccCCcCCCCCC
Q psy5605 23 VDIVKSAKFKELAPYD 38 (152)
Q Consensus 23 ~d~vKTg~~KElaP~d 38 (152)
+|||||+.+..-..-+
T Consensus 164 ADfVKTSTGf~~~gAt 179 (260)
T 1p1x_A 164 ADFIKTSTGKVAVNAT 179 (260)
T ss_dssp CSEEECCCSCSSCCCC
T ss_pred CCEEEeCCCCCCCCCC
Confidence 5999999988744444
No 216
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=38.69 E-value=51 Score=23.90 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=48.3
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceec-----CC-CCcee--------C
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKS-----DD-GGRKI--------T 113 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~-----~~-gGR~l--------T 113 (152)
.|++.|--++++.+..|.+..| -|.+-+|.-++.||+.|+|... +. -|..+ .
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg--------------~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~ 72 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVG--------------LSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTA 72 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECC
T ss_pred HHHHHHHHCCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEc
Confidence 4777777789999999999974 5678899999999999999842 21 24322 2
Q ss_pred cchHhhHHHHHHHHH
Q psy5605 114 SHGRRDMDRIAAQIR 128 (152)
Q Consensus 114 ~~G~~~LD~iA~~i~ 128 (152)
+.....+|+++..+.
T Consensus 73 ~~~~~~~~~~~~~l~ 87 (162)
T 3i4p_A 73 SHSIEWLKRFSEVVS 87 (162)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHh
Confidence 333356777777654
No 217
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=38.08 E-value=52 Score=27.04 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=38.8
Q ss_pred HHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceec
Q psy5605 47 AALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKS 105 (152)
Q Consensus 47 ASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~ 105 (152)
..|++.|+-++++.-..|.+..| =|..-+.+++++|++.|+|+..
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~--------------ls~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQ--------------LAPASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTT--------------CCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCcEEee
Confidence 56999999999999999999864 4567889999999999999763
No 218
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=37.14 E-value=52 Score=24.60 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=32.9
Q ss_pred CchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHHHHHHHHHHHH
Q psy5605 84 SSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAAQIRVSKKEAA 135 (152)
Q Consensus 84 asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~~~~~ 135 (152)
....-|.++|+| .+++ -.||++....||.+.++|++.+..++
T Consensus 34 sy~~YIyKVLKQ--------Vhpd--~gISskAm~ImnSfvnDiferIA~EA 75 (123)
T 2nqb_D 34 SYAIYIYTVLKQ--------VHPD--TGISSKAMSIMNSFVNDIFERIAAEA 75 (123)
T ss_dssp CSHHHHHHHHHH--------HCTT--CEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--------hCCC--CCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999998 3664 35999999999999999998775443
No 219
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=36.20 E-value=19 Score=27.87 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCcceecCCCCceeCcchHhhHH
Q psy5605 88 VARKALQALEQVNIIEKSDDGGRKITSHGRRDMD 121 (152)
Q Consensus 88 iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD 121 (152)
+-|++-+-|...|+|+..+ .||.+|+.|.+.+.
T Consensus 281 l~~~l~~~~i~~~li~~~~-~g~~~~~~~~~~~~ 313 (324)
T 1hqc_A 281 LEEVHEPYLIRQGLLKRTP-RGRVPTELAYRHLG 313 (324)
T ss_dssp HHHHTHHHHHHTTSEEEET-TEEEECHHHHHHTT
T ss_pred HHHHHhHHHHHhcchhcCC-ccceecHHHHHHHh
Confidence 3333444488899999877 59999999998764
No 220
>3tvt_B PINS, partner of inscuteable; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster}
Probab=36.05 E-value=7.5 Score=24.83 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHhCCcceecCC
Q psy5605 85 SGSVARKALQALEQVNIIEKSDD 107 (152)
Q Consensus 85 sg~iiR~~LQqLE~~glVek~~~ 107 (152)
-|..+|---|.+|.+.||...|+
T Consensus 16 qgrmvrvrrqsmeqldlikitpd 38 (50)
T 3tvt_B 16 QGRMVRVRRQDMEQLDLIKITPD 38 (50)
T ss_pred cceEEEeeecchhhcCeEEecCC
Confidence 35567777799999999965553
No 221
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding, chromatin regulator, charge syndrome, phosphorylation, disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=36.01 E-value=3.5 Score=29.37 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=19.8
Q ss_pred HHHhhhccccC-CCCCCCcchhhhc
Q psy5605 4 VSYIGFRPSKS-GKMKVPEWVDIVK 27 (152)
Q Consensus 4 I~~~A~~LKk~-gki~~PeW~d~vK 27 (152)
.+.|.++|+++ +....|+|++|||
T Consensus 38 l~~L~~WL~~nP~y~v~p~w~~~v~ 62 (87)
T 2v0f_A 38 MKDLPRWLEENPEFAVAPDWTDIVK 62 (87)
T ss_dssp GGGHHHHHHHCTTEEECHHHHHHHH
T ss_pred hHHHHHHHHHCCCceechhHHHHHH
Confidence 35688999999 5557899999997
No 222
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=33.88 E-value=23 Score=26.90 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=23.9
Q ss_pred hHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcce
Q psy5605 52 HIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIE 103 (152)
Q Consensus 52 kiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVe 103 (152)
+||+-|| .+|++.++ ..++.+.+.|++.|-|-
T Consensus 4 kIYlAGP--------~f~~~e~~------------~~~~~i~~~L~~~G~Vl 35 (152)
T 4fyk_A 4 SVYFCGS--------IRGGREDQ------------ALYARIVSRLRRYGKVL 35 (152)
T ss_dssp EEEEECC--------STTCCTTH------------HHHHHHHHHHTTTSEEC
T ss_pred eEEEECC--------CCCcHHHH------------HHHHHHHHHHHHcCccc
Confidence 7899988 35544332 68899999999999663
No 223
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=33.63 E-value=51 Score=27.48 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=39.8
Q ss_pred HHHHHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceec
Q psy5605 45 RCAALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKS 105 (152)
Q Consensus 45 RaASilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~ 105 (152)
....|++.|+-++++....|.+..| =|..-+.+++++|++.|+|+..
T Consensus 40 n~~~il~~l~~~~~~sr~ela~~~g--------------ls~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 40 NAGRVYKLIDQKGPISRIDLSKESE--------------LAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEec
Confidence 3456999999999999999999874 3567888999999999999764
No 224
>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*
Probab=33.38 E-value=9.9 Score=29.86 Aligned_cols=19 Identities=26% Similarity=0.695 Sum_probs=15.8
Q ss_pred hhhccccCCC--CCCCcchhh
Q psy5605 7 IGFRPSKSGK--MKVPEWVDI 25 (152)
Q Consensus 7 ~A~~LKk~gk--i~~PeW~d~ 25 (152)
+|-.||+.++ |.+|+|.++
T Consensus 48 LAl~Lkk~~kc~I~~P~Wl~~ 68 (185)
T 2e9x_B 48 LAINLKQRQKCRLLPPEWMDV 68 (185)
T ss_dssp HHHHHHHTTSEEECCCTTCCH
T ss_pred HHHHHHhCCceEEECCcccCH
Confidence 6889999977 889999654
No 225
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=33.37 E-value=41 Score=27.61 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=37.0
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceec
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKS 105 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~ 105 (152)
.|++.|+ ++++.-..|.+..| =|.+-+-+++++|++.|+|+..
T Consensus 24 ~il~~l~-~~~~sr~~la~~~g--------------ls~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 24 RILKRIM-KSPVSRVELAEELG--------------LTKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp CSHHHHH-HSCBCHHHHHHHHT--------------CCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHH-cCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEee
Confidence 5899999 99999999999874 3567788999999999999753
No 226
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=32.73 E-value=87 Score=23.86 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=38.8
Q ss_pred HHHHHH-HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceec---CCCCce
Q psy5605 43 YTRCAA-LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKS---DDGGRK 111 (152)
Q Consensus 43 YiRaAS-ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~---~~gGR~ 111 (152)
+.|||- +|.-|+.++|+.-..+..+.|-. | ..++++|.+.|||+.. +..||-
T Consensus 92 LS~aaLEtLaiIay~qPiTR~eI~~irGv~-------------~----~~~v~~L~e~glI~e~g~~~~~GRp 147 (162)
T 1t6s_A 92 LSRSMLEVLAVVAWHQPVTKGEIQQIRGAS-------------P----DYSIDRLLARGLIEVRGRADSPGRP 147 (162)
T ss_dssp HHHHHHHHHHHHHHHCSEEHHHHHHHHTCC-------------C----CSHHHHHHHTTSEEEEEECSSTTCC
T ss_pred cCHHHHHHHHHHHHcCCcCHHHHHHHHCCC-------------H----HHHHHHHHHCCCEEEccccCCCCCC
Confidence 456654 89999999999999999997652 2 2356889999999842 335763
No 227
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=32.61 E-value=22 Score=24.89 Aligned_cols=31 Identities=13% Similarity=0.338 Sum_probs=24.9
Q ss_pred CCchhHHHHHHHHHHhCCcceecCC-CCceeC
Q psy5605 83 RSSGSVARKALQALEQVNIIEKSDD-GGRKIT 113 (152)
Q Consensus 83 ~asg~iiR~~LQqLE~~glVek~~~-gGR~lT 113 (152)
.-.-.++..+.+.|+..+-||+.|+ .||.++
T Consensus 48 e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~ 79 (89)
T 1i96_V 48 ELGERILNRVTEDLKDLAVVEMKPEMLGRDMN 79 (89)
T ss_pred HHHHHHHHHHHHHhhhheEEecCccccCCEEE
Confidence 3456788999999999999999885 587654
No 228
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=32.30 E-value=24 Score=29.22 Aligned_cols=54 Identities=11% Similarity=0.266 Sum_probs=41.9
Q ss_pred HHHhhHhh-cC-CcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCc-ceecCCCCceeCcc
Q psy5605 48 ALARHIYM-RS-PVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNI-IEKSDDGGRKITSH 115 (152)
Q Consensus 48 SilRkiYl-~g-~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~gl-Vek~~~gGR~lT~~ 115 (152)
.||+.|.- .+ ++....|+..+| =|..-+++.+++|++.|+ |+..+..|.+|.+.
T Consensus 7 ~iL~~L~~~~g~~~Sg~eLa~~lg--------------vSr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~~ 63 (323)
T 3rkx_A 7 DVLQLLYKNKPNYISGQSIAESLN--------------ISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHT--------------SCHHHHHHHHHHHHHTTCEEEEETTTEEEEEEC
T ss_pred HHHHHHHhCCCCccCHHHHHHHHC--------------CCHHHHHHHHHHHHhcCCeEEEeCCCeEEEecC
Confidence 57777764 23 788899999984 367899999999999999 55556668888764
No 229
>2j5y_A GA module, peptostreptococcal albumin-binding protein; protein binding, cell WALL, peptidoglycan-anchor; 1.4A {Peptostreptococcus magnus} SCOP: a.8.1.2 PDB: 2vdb_B* 1gab_A 1prb_A 1tf0_B*
Probab=32.30 E-value=44 Score=22.31 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCce
Q psy5605 123 IAAQIRVSKKEAALQALAAQGIT 145 (152)
Q Consensus 123 iA~~i~~~~~~~~~~~~~~~~~~ 145 (152)
|....+++.+|..+..|.+.|||
T Consensus 10 ~~~~~L~eAKe~Ai~el~~~GIt 32 (61)
T 2j5y_A 10 IDQWLLKNAKEDAIAELKKAGIT 32 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHHHHHcCCc
Confidence 45667889999999999999996
No 230
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=32.14 E-value=81 Score=24.80 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=40.4
Q ss_pred cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhH
Q psy5605 56 RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDM 120 (152)
Q Consensus 56 ~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~L 120 (152)
.||+.+..|....|- +...++.+|..|..+|+++.+.++.-.+|+.++...
T Consensus 36 ~g~~t~~elA~~~~~--------------~~~~l~rlLr~l~~~gl~~~~~~~~y~~t~~s~~l~ 86 (332)
T 3i53_A 36 AGHRTAAEIASAAGA--------------HADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLR 86 (332)
T ss_dssp TTCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECTTSBEEECTTGGGGS
T ss_pred cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHhCCcEEecCCCeEEcCHhHHHHh
Confidence 579999999998753 234799999999999999987655667787776553
No 231
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=30.78 E-value=12 Score=27.23 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=31.2
Q ss_pred HHHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcce
Q psy5605 48 ALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIE 103 (152)
Q Consensus 48 SilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVe 103 (152)
.|+..+--.+.+....|+..+| -|.+-+|.+|+.||+.|+|+
T Consensus 17 ~Il~~l~~~~~ls~~eLa~~lg--------------vSr~~vr~al~~L~~~Gli~ 58 (163)
T 2gqq_A 17 NILNELQKDGRISNVELSKRVG--------------LSPTPCLERVRRLERQGFIQ 58 (163)
T ss_dssp HHHHHHHHCSSCCTTGGGTSSS--------------CCTTTSSSTHHHHHHHTSEE
T ss_pred HHHHHHHhCCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCcEE
Confidence 4666444456677888888774 34566788999999999998
No 232
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=30.17 E-value=86 Score=24.54 Aligned_cols=51 Identities=12% Similarity=0.093 Sum_probs=40.0
Q ss_pred cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhH
Q psy5605 56 RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDM 120 (152)
Q Consensus 56 ~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~L 120 (152)
.+|..+..|....|- +-..++..|..|..+|+++...++.-.+|+.++..+
T Consensus 39 ~~~~t~~ela~~~~~--------------~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t~~s~~l~ 89 (334)
T 2ip2_A 39 SGIDSDETLAAAVGS--------------DAERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLR 89 (334)
T ss_dssp TTCCSHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHTTS
T ss_pred CCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHhCCceEecCCCeEecCHHHHHHh
Confidence 489999999988753 337899999999999999987655677787665443
No 233
>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*
Probab=29.99 E-value=56 Score=27.67 Aligned_cols=18 Identities=6% Similarity=-0.119 Sum_probs=13.7
Q ss_pred chhhhcccCCcCCCCCCC
Q psy5605 22 WVDIVKSAKFKELAPYDP 39 (152)
Q Consensus 22 W~d~vKTg~~KElaP~d~ 39 (152)
=+|||||+.++.-..-.+
T Consensus 179 GADFVKTSTGf~~~gAT~ 196 (297)
T 4eiv_A 179 GADFLQTSSGLGATHATM 196 (297)
T ss_dssp TCSEEECCCSSSSCCCCH
T ss_pred CCCEEEcCCCCCCCCCCH
Confidence 369999999997655553
No 234
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=29.64 E-value=11 Score=27.73 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHHHHHHHHH
Q psy5605 89 ARKALQALEQ---VNIIEKSDDGGRKITSHGRRDMDRIAAQIRVSK 131 (152)
Q Consensus 89 iR~~LQqLE~---~glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~ 131 (152)
+=+.+++||+ ..|.+.+. +|=.||+.|+.+++.+ .++....
T Consensus 29 vS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a-~~~l~~~ 72 (300)
T 3mz1_A 29 VTNLIQGLEAHLRTKLLNRTT-RRVLVTPDGALYYERA-ARLLSDL 72 (300)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHhCCeeEecCC-CceeeCHhHHHHHHHH-HHHHHHH
Confidence 3345688887 35666665 5889999999998765 4444333
No 235
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=29.11 E-value=12 Score=28.72 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC---CcceecCCCCceeCcchHhhHHHHHHHHHHHHH
Q psy5605 89 ARKALQALEQV---NIIEKSDDGGRKITSHGRRDMDRIAAQIRVSKK 132 (152)
Q Consensus 89 iR~~LQqLE~~---glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~~ 132 (152)
+=+.+++||+. .|++.+. .|=.||+.|+.+++.. .++.....
T Consensus 32 vS~~I~~LE~~lg~~Lf~R~~-r~~~lT~~G~~l~~~a-~~il~~~~ 76 (312)
T 2h9b_A 32 LSRQIQNLEEELGIQLLERGS-RPVKTTPEGHFFYQYA-IKLLSNVD 76 (312)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHhCCEeEeeCC-CCceECHHHHHHHHHH-HHHHHHHH
Confidence 33456899984 6777665 4889999999998764 44444433
No 236
>4a18_B RPL39, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_B 4a1b_B 4a1d_B
Probab=28.52 E-value=50 Score=21.31 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=26.7
Q ss_pred HhhhccccCCCCCCCcchhhhcccCCcCCCCCCCch
Q psy5605 6 YIGFRPSKSGKMKVPEWVDIVKSAKFKELAPYDPDW 41 (152)
Q Consensus 6 ~~A~~LKk~gki~~PeW~d~vKTg~~KElaP~d~DW 41 (152)
.||..+|++ =.+|.|+-. ||+.-=...|-.-.|
T Consensus 12 rLaK~~kqN--r~iP~Wv~~-KT~~kir~n~KRRhW 44 (52)
T 4a18_B 12 RFGRKIKQN--RPLPNWYRY-KSDTNIRYNSKRRNW 44 (52)
T ss_dssp HHHHHHHTT--SCCCTTGGG-CSSCCCSSCTTCCCT
T ss_pred HHHHHHhcc--CCCCceEEE-eCCCccccCCccccc
Confidence 578888888 689999976 999877777776666
No 237
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=28.30 E-value=40 Score=23.83 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=19.9
Q ss_pred CCchhHHHHHHHHHHhCCcceecC
Q psy5605 83 RSSGSVARKALQALEQVNIIEKSD 106 (152)
Q Consensus 83 ~asg~iiR~~LQqLE~~glVek~~ 106 (152)
.-+.+-+..+|+.||+.|+|+...
T Consensus 62 ~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 62 TVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SSCHHHHHHHHHHHHHTTSSEECC
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 446677888999999999998765
No 238
>3u5e_l L46, YL40, 60S ribosomal protein L39; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_O 2ww9_O 3izc_o 3izs_o 2wwb_O 3o5h_e 3o58_e 3u5i_l 4b6a_l 3jyw_1
Probab=28.13 E-value=50 Score=21.22 Aligned_cols=33 Identities=9% Similarity=0.419 Sum_probs=26.6
Q ss_pred HhhhccccCCCCCCCcchhhhcccCCcCCCCCCCch
Q psy5605 6 YIGFRPSKSGKMKVPEWVDIVKSAKFKELAPYDPDW 41 (152)
Q Consensus 6 ~~A~~LKk~gki~~PeW~d~vKTg~~KElaP~d~DW 41 (152)
.||..+|++ =.+|.|+-. ||+.-=...|-.-.|
T Consensus 12 rLaK~~kqN--r~iP~Wv~~-KT~~kir~n~KRRhW 44 (51)
T 3u5e_l 12 KMAKAKKQN--RPLPQWIRL-RTNNTIRYNAKRRNW 44 (51)
T ss_dssp HHHHHHHTC--SCCCGGGGG-STTCCCCSCTTCCCT
T ss_pred HHHHHHhcc--CCCCceEEE-eCCCccccCCccccc
Confidence 578888888 689999976 999877777776666
No 239
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=27.55 E-value=74 Score=25.12 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=41.8
Q ss_pred hcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHH
Q psy5605 55 MRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMD 121 (152)
Q Consensus 55 l~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD 121 (152)
+.+|+.+..|...-|- .-..+|.+|..|..+|+++... ++..+|+.+...|+
T Consensus 53 l~~~~t~~elA~~~~~--------------~~~~l~rlLr~L~~~gll~~~~-~~y~~t~~s~~~l~ 104 (352)
T 3mcz_A 53 TQTGRTPAEVAASFGM--------------VEGKAAILLHALAALGLLTKEG-DAFRNTALTERYLT 104 (352)
T ss_dssp TTSCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHS
T ss_pred hCCCCCHHHHHHHhCc--------------ChHHHHHHHHHHHHCCCeEecC-CeeecCHHHHhhcc
Confidence 3568889999888753 2345999999999999999876 57899999987764
No 240
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=26.97 E-value=48 Score=24.88 Aligned_cols=44 Identities=2% Similarity=0.193 Sum_probs=33.8
Q ss_pred HHhhHhhcCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC
Q psy5605 49 LARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD 106 (152)
Q Consensus 49 ilRkiYl~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~ 106 (152)
|++.| ..+|..|..|....|+ -|.+-+-+=|+.|+++|+|+..+
T Consensus 28 il~~L-~~~~~~~~~l~~~l~~-------------~~~~~~s~Hl~~L~~aglv~~~~ 71 (182)
T 4g6q_A 28 ITQLL-IGRSLTTRELAELLPD-------------VATTTLYRQVGILVKAGVLMVTA 71 (182)
T ss_dssp HHHHT-TTSCEEHHHHHHHCTT-------------BCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHH-HhCCCCHHHHHHHhcC-------------CCHHHHHHHHHHHHHCCCeEEEE
Confidence 77666 4789999999998753 34566666789999999998544
No 241
>3iz5_o 60S ribosomal protein L39 (L39E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_o 2zkr_3
Probab=26.47 E-value=46 Score=21.39 Aligned_cols=33 Identities=9% Similarity=0.404 Sum_probs=26.5
Q ss_pred HhhhccccCCCCCCCcchhhhcccCCcCCCCCCCch
Q psy5605 6 YIGFRPSKSGKMKVPEWVDIVKSAKFKELAPYDPDW 41 (152)
Q Consensus 6 ~~A~~LKk~gki~~PeW~d~vKTg~~KElaP~d~DW 41 (152)
.||..+|++ =.+|.|+-. ||+.-=...|-.-.|
T Consensus 12 rLaK~~kqN--r~iP~Wv~~-KT~~kir~n~kRRhW 44 (51)
T 3iz5_o 12 KLAKKQRQN--RPIPYWIRM-RTDNTIRYNAKRRHW 44 (51)
T ss_dssp HHHHHHHHS--SCCCGGGGT-SCSSCCCCCCCCCCS
T ss_pred HHHHHHhcc--CCCCceEEE-eCCCccccCCccccc
Confidence 578888888 689999976 999877777766666
No 242
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=26.25 E-value=15 Score=23.31 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=26.7
Q ss_pred CCccCCCchhHHHHHHHHHHhCCcceecC---CCCceeCcchHhhHHHHHH
Q psy5605 78 PSHFCRSSGSVARKALQALEQVNIIEKSD---DGGRKITSHGRRDMDRIAA 125 (152)
Q Consensus 78 P~h~~~asg~iiR~~LQqLE~~glVek~~---~gGR~lT~~G~~~LD~iA~ 125 (152)
|...+.|+|++|. ++.+ ..|++...+|+..+|.|-.
T Consensus 11 ~C~~C~GsG~~i~------------~~C~~C~G~G~v~~~~G~~~~~~~~~ 49 (53)
T 3lcz_A 11 TCPNCNGSGREEP------------EPCPKCLGKGVILTAQGSTLLHFIKK 49 (53)
T ss_dssp ECTTTTTSCEETT------------EECTTTTTSSEEECHHHHHHHHHHHH
T ss_pred cCcCCcccccCCC------------CcCCCCCCcEEEEEEeCchHHHHHHH
Confidence 5566888888873 3333 3589999999999998743
No 243
>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1
Probab=25.50 E-value=41 Score=27.99 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=10.6
Q ss_pred hhhhcccCCcCCC
Q psy5605 23 VDIVKSAKFKELA 35 (152)
Q Consensus 23 ~d~vKTg~~KEla 35 (152)
+|||||+.+..-.
T Consensus 186 ADfVKTSTGf~~~ 198 (281)
T 2a4a_A 186 ADFIKTSTGKVQI 198 (281)
T ss_dssp CSEEECCCSCSSC
T ss_pred CCEEEeCCCCCCC
Confidence 5999999988743
No 244
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.47 E-value=38 Score=23.85 Aligned_cols=45 Identities=16% Similarity=0.036 Sum_probs=32.8
Q ss_pred HHHhhHhhcCC--cchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecC
Q psy5605 48 ALARHIYMRSP--VGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSD 106 (152)
Q Consensus 48 SilRkiYl~g~--vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~ 106 (152)
-|+..|.-.|. +-...|++.-+= +-.++-+||+.||..|||...+
T Consensus 41 lVy~~I~~aGn~GIw~kdL~~~tnL--------------~~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 41 LVYQIIEDAGNKGIWSRDVRYKSNL--------------PLTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp HHHHHHHHHTTSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCC--------------CHHHHHHHHHHHHhCCCEEEec
Confidence 35556666555 556788887532 3478999999999999998654
No 245
>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens} PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A 2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A 1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ...
Probab=25.39 E-value=30 Score=26.25 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhhHhhcCC
Q psy5605 41 WFYTRCAALARHIYMRSP 58 (152)
Q Consensus 41 W~YiRaASilRkiYl~g~ 58 (152)
=.+-|||.+||++|.+..
T Consensus 43 E~~CrAatvLrq~Y~~H~ 60 (129)
T 2d48_A 43 ETFCRAATVLRQFYSHHE 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 357899999999998753
No 246
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=25.35 E-value=81 Score=25.54 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=39.5
Q ss_pred cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCC-ceeCcchHhh
Q psy5605 56 RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGG-RKITSHGRRD 119 (152)
Q Consensus 56 ~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gG-R~lT~~G~~~ 119 (152)
.||+.+..|+..-|- +-..+|.+|..|..+|+++.++++. -.+|+.++.+
T Consensus 69 ~g~~t~~eLA~~~g~--------------~~~~l~rlLr~L~~~g~l~~~~~~~~y~~t~~s~~L 119 (369)
T 3gwz_A 69 EGPRTATALAEATGA--------------HEQTLRRLLRLLATVGVFDDLGHDDLFAQNALSAVL 119 (369)
T ss_dssp TSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSSEECSSTTEEECCHHHHTT
T ss_pred CCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHhCCCEEEeCCCceEecCHHHHHH
Confidence 478999999998753 2346999999999999999877544 5888877653
No 247
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=24.70 E-value=50 Score=24.71 Aligned_cols=45 Identities=13% Similarity=-0.054 Sum_probs=31.8
Q ss_pred HHHHHhCCcceecC---CCCceeCcchHhhHHHHHHHHHHHHHHHHHH
Q psy5605 93 LQALEQVNIIEKSD---DGGRKITSHGRRDMDRIAAQIRVSKKEAALQ 137 (152)
Q Consensus 93 LQqLE~~glVek~~---~gGR~lT~~G~~~LD~iA~~i~~~~~~~~~~ 137 (152)
..+|++.|..-.++ ..|+.+|++|-...-.+|..+++.+.-.+.+
T Consensus 137 ~~~l~~~g~~~~d~~vV~Dg~iiTs~g~~~~~d~al~lve~l~G~~~a 184 (194)
T 4gdh_A 137 RGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKY 184 (194)
T ss_dssp HHHHHHTTCEECCSSEEEETTEEEECSGGGHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHhcCCeeecceEEEcCCEEECCCHhHHHHHHHHHHHHHcCHHHH
Confidence 35677766433232 2489999999998888999998887544444
No 248
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=24.03 E-value=16 Score=28.21 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC---CcceecCCCCceeCcchHhhHHHHHHHHHHHH
Q psy5605 89 ARKALQALEQV---NIIEKSDDGGRKITSHGRRDMDRIAAQIRVSK 131 (152)
Q Consensus 89 iR~~LQqLE~~---glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~ 131 (152)
+=+.+++||+. .|++.+. .|=.||+.|+.+++.. .++...+
T Consensus 32 vS~~I~~LE~~lG~~Lf~R~~-r~v~lT~~G~~l~~~a-~~il~~~ 75 (313)
T 2h98_A 32 LSRQIQKLEEELGIQLFERGF-RPAKVTEAGMFFYQHA-VQILTHT 75 (313)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHhCCeeEEcCC-CCeEECHhHHHHHHHH-HHHHHHH
Confidence 33456889984 6777666 4889999999998754 4444433
No 249
>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Probab=23.75 E-value=9.7 Score=26.57 Aligned_cols=9 Identities=33% Similarity=0.844 Sum_probs=7.4
Q ss_pred CCCchHHHH
Q psy5605 37 YDPDWFYTR 45 (152)
Q Consensus 37 ~d~DW~YiR 45 (152)
.|||||++|
T Consensus 50 ~~peW~lvr 58 (82)
T 1u3o_A 50 ERPGWCLVR 58 (82)
T ss_dssp SSTTEEEEE
T ss_pred CCCCEEEEE
Confidence 478999887
No 250
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=23.67 E-value=17 Score=27.93 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC---CcceecCCCCceeCcchHhhHHHHHHHHHHHHH
Q psy5605 89 ARKALQALEQV---NIIEKSDDGGRKITSHGRRDMDRIAAQIRVSKK 132 (152)
Q Consensus 89 iR~~LQqLE~~---glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~~ 132 (152)
+=+.+++||+. .|.+.+. .|=.||+.|+.+++. |.++...+.
T Consensus 45 vS~~I~~LE~~lg~~Lf~R~~-r~~~lT~~G~~l~~~-a~~~l~~~~ 89 (315)
T 1uth_A 45 VSNSLKRLRTALNDDLFLRTS-KGMEPTPYALHLAEP-VIYALNTLQ 89 (315)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHhCCcceeecC-CCccCCHHHHHHHHH-HHHHHHHHH
Confidence 33456888884 6666665 477899999999876 344544443
No 251
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=23.46 E-value=51 Score=26.54 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=21.0
Q ss_pred chhhhcccCCcC-CCCCCCchHHHHHHHHHhhHhhcCCcch
Q psy5605 22 WVDIVKSAKFKE-LAPYDPDWFYTRCAALARHIYMRSPVGV 61 (152)
Q Consensus 22 W~d~vKTg~~KE-laP~d~DW~YiRaASilRkiYl~g~vGV 61 (152)
=+|||||+.+.. -..-. +....++|+. +.+++||
T Consensus 159 GADfVKTSTGf~~~~gAt-----~edv~lm~~~-v~~~v~V 193 (231)
T 3ndo_A 159 GADFVKTSTGFHPSGGAS-----VQAVEIMART-VGERLGV 193 (231)
T ss_dssp TCSEEECCCSCCTTCSCC-----HHHHHHHHHH-HTTTSEE
T ss_pred CcCEEEcCCCCCCCCCCC-----HHHHHHHHHH-hCCCceE
Confidence 369999999875 33223 3556667665 3455555
No 252
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=22.69 E-value=81 Score=24.50 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=38.2
Q ss_pred CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhh
Q psy5605 57 SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRD 119 (152)
Q Consensus 57 g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~ 119 (152)
||..+..|...-|- +...++..|..|..+|+++.++ +.-.+|+.+...
T Consensus 38 ~~~t~~ela~~~~~--------------~~~~l~r~L~~L~~~g~l~~~~-~~y~~t~~~~~~ 85 (335)
T 2r3s_A 38 GIESSQSLAQKCQT--------------SERGMRMLCDYLVIIGFMTKQA-EGYRLTSDSAMF 85 (335)
T ss_dssp SEECHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHH
T ss_pred CCCCHHHHHHHhCC--------------CchHHHHHHHHHHhcCCeEecC-CEEecCHHHHHH
Confidence 78999999998753 2578999999999999998754 567788777433
No 253
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=22.48 E-value=25 Score=29.03 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=56.0
Q ss_pred hHHHhhhccccCCCCCCCcch-hhhcccCCcCCCCCCCchHHH-HHHHHHhhHhhcCCcchhhHHHHhCCCCCCC----C
Q psy5605 3 SVSYIGFRPSKSGKMKVPEWV-DIVKSAKFKELAPYDPDWFYT-RCAALARHIYMRSPVGVKTVTKIFGGRKRNG----V 76 (152)
Q Consensus 3 ~I~~~A~~LKk~gki~~PeW~-d~vKTg~~KElaP~d~DW~Yi-RaASilRkiYl~g~vGV~~L~~~YGg~krrG----~ 76 (152)
.|.+|-+.|..+|-|-+|-.+ ++...... +.||..++||-+ |...-.=..-..+.-|+|.|...| ++.-| .
T Consensus 54 vi~AL~~~vg~~GTLvmPt~t~~~~dp~~w-~~ppvp~~~~~~ir~~~p~fDp~~tps~~~G~l~E~f--r~~pg~~RS~ 130 (268)
T 3ijw_A 54 VVEALMEVITEEGTIIMPTQSSDLSDPKHW-SRPPVPEEWWQIIRDNVPAFEPHITPTRAMGKVVECF--RTYPNVVRSN 130 (268)
T ss_dssp HHHHHHHHHCTTSEEEEECCCGGGSCGGGC-CSSCCCHHHHHHHHHHSCCBCTTTCCCSSSCHHHHHH--HTSTTCEECS
T ss_pred HHHHHHHHhCCCCeEEEeccccccCChhhh-cCCCCcHHHHHHHHhhCCCCCcccCcccccChHHHHH--HHCCCCeecC
Confidence 478888999999999999864 34444433 788998888843 332221111122344788888887 44444 3
Q ss_pred CCCccCCCchhHHHHHHH
Q psy5605 77 CPSHFCRSSGSVARKALQ 94 (152)
Q Consensus 77 ~P~h~~~asg~iiR~~LQ 94 (152)
.|.|.--+-|.-...+++
T Consensus 131 HP~~Sfaa~G~~A~~i~~ 148 (268)
T 3ijw_A 131 HPLGSFAAWGRHAEEITV 148 (268)
T ss_dssp CTTTCEEEEETTHHHHHT
T ss_pred CCCcceEEeCcCHHHHhc
Confidence 466666666776666655
No 254
>4asn_A TUBR; transcription, tubulin, FTSZ, segregation, partition; 3.50A {Bacillus megaterium}
Probab=22.15 E-value=1.1e+02 Score=21.95 Aligned_cols=39 Identities=28% Similarity=0.456 Sum_probs=31.6
Q ss_pred CchhHHHHHHHHHHhCCcceecCCCCc----eeCcchHhhHHHH
Q psy5605 84 SSGSVARKALQALEQVNIIEKSDDGGR----KITSHGRRDMDRI 123 (152)
Q Consensus 84 asg~iiR~~LQqLE~~glVek~~~gGR----~lT~~G~~~LD~i 123 (152)
+|-.-.|+.|..||.+-+|.... ||| .||.-|+..+.+.
T Consensus 46 ~~TA~~RKsL~rLEAi~FI~~V~-G~r~HK~~LT~YG~~A~~qa 88 (101)
T 4asn_A 46 YSTANFRKTLNKLEAIHFIGTVT-GGKEHKLYLTEYGQQAVQQA 88 (101)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEC-SSSSCEEEECHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHhhhcc-cCccceeehHHhhHHHHHHH
Confidence 45578999999999999998777 454 6999999887653
No 255
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=21.69 E-value=52 Score=27.03 Aligned_cols=84 Identities=15% Similarity=0.230 Sum_probs=53.3
Q ss_pred hHHHhhhccccCCCCCCCcchhh-hcccCCcCCCCCCCchHHHHHHHHHhh---Hh--hcCCc--chhhHHHHhCCCCCC
Q psy5605 3 SVSYIGFRPSKSGKMKVPEWVDI-VKSAKFKELAPYDPDWFYTRCAALARH---IY--MRSPV--GVKTVTKIFGGRKRN 74 (152)
Q Consensus 3 ~I~~~A~~LKk~gki~~PeW~d~-vKTg~~KElaP~d~DW~YiRaASilRk---iY--l~g~v--GV~~L~~~YGg~krr 74 (152)
.|++|-+.+.++|-|-+|-++.- .++. .=+.||..++|| -.+|. .| ..-|. ++|.|...|- +.-
T Consensus 52 vi~AL~~~vg~~GTLvmPtft~~~~dp~-~w~~~p~~~~~~-----~~ir~~~p~fDp~~Tps~~~mG~l~E~fR--~~p 123 (273)
T 2nyg_A 52 VIQALIDVVTEEGTIVMPSQSVELSDPK-EWGNPPVPEEWW-----DIIRESMPAYNSNYTPTTRGMGQIVELFR--SYP 123 (273)
T ss_dssp HHHHHHHHHTTTSEEEEECCCTTSSCGG-GCCSSCCCGGGT-----THHHHSCCCCCTTTCCCCGGGCHHHHHHT--TST
T ss_pred HHHHHHHHhCCCCeEEEeccccccCChh-hhcCCCCcHHHH-----HHHHhhcCCCCcccCCcccccChHHHHHH--hCC
Confidence 47788888888999999987643 2232 236788888998 44443 33 12456 8999998884 333
Q ss_pred C----CCCCccCCCchhHHHHHHH
Q psy5605 75 G----VCPSHFCRSSGSVARKALQ 94 (152)
Q Consensus 75 G----~~P~h~~~asg~iiR~~LQ 94 (152)
| ..|.+.--|-|.-...+++
T Consensus 124 gv~RS~HP~~SfaA~G~~A~~i~~ 147 (273)
T 2nyg_A 124 EVKRSNHPNYSFVAWGKHKNKILN 147 (273)
T ss_dssp TCEECSCSSSCEEEEETTHHHHHS
T ss_pred CCcccCCCCcceEEeCcCHHHHhc
Confidence 3 3455554455665555543
No 256
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=21.16 E-value=63 Score=23.31 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=19.4
Q ss_pred CCchhHHHHHHHHHHhCCcceec
Q psy5605 83 RSSGSVARKALQALEQVNIIEKS 105 (152)
Q Consensus 83 ~asg~iiR~~LQqLE~~glVek~ 105 (152)
.-|..-+=.+|++|++.|+|+..
T Consensus 178 g~sr~tvsR~l~~l~~~g~I~~~ 200 (220)
T 2fmy_A 178 GTTRQTVSVLLNDFKKMGILERV 200 (220)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEES
T ss_pred CCcHHHHHHHHHHHHHCCCEEEc
Confidence 45667778899999999999986
No 257
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=21.09 E-value=86 Score=24.50 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCcceecCCC---CceeCcch
Q psy5605 90 RKALQALEQVNIIEKSDDG---GRKITSHG 116 (152)
Q Consensus 90 R~~LQqLE~~glVek~~~g---GR~lT~~G 116 (152)
..+|++|+++|+|..+|.+ |++.+.-.
T Consensus 85 ~~~L~~L~~~g~l~~TPs~~~~g~~~~~yd 114 (185)
T 3v32_B 85 QHILRELEKKKILVFTPSRRVGGKRVVCYD 114 (185)
T ss_dssp THHHHHHHHTTCEEEECCCC-------CCH
T ss_pred HHHHHHHHHCCCEEECCCcccCCCcccCcc
Confidence 5889999999999988853 44444433
No 258
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=20.56 E-value=1.3e+02 Score=23.23 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHHHHHHHHHHHH
Q psy5605 85 SGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAAQIRVSKKEAA 135 (152)
Q Consensus 85 sg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~LD~iA~~i~~~~~~~~ 135 (152)
...-|+++|+| .+++. .+|++....|+.+..++++.+..+.
T Consensus 5 ~~~yi~kvLkq--------v~p~~--~iS~~Am~~m~s~v~di~~rIa~eA 45 (192)
T 2jss_A 5 YSSYIYKVLKQ--------THPDT--GISQKSMSILNSFVNDIFERIATEA 45 (192)
T ss_dssp THHHHHHHHHH--------HCSSC--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc--------cCCCC--CcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568888887 35543 3999999999999999888775543
No 259
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=20.42 E-value=75 Score=25.38 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=39.3
Q ss_pred cCCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhH
Q psy5605 56 RSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDM 120 (152)
Q Consensus 56 ~g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~L 120 (152)
.||+.+..|...-|- .-..+|.+|..|..+|+++. ..+.-.+|+.++.++
T Consensus 53 ~g~~t~~elA~~~g~--------------~~~~l~rlLr~l~~~g~l~~-~~~~y~~t~~s~~l~ 102 (348)
T 3lst_A 53 DGPRTPAELAAATGT--------------DADALRRVLRLLAVRDVVRE-SDGRFALTDKGAALR 102 (348)
T ss_dssp TSCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEE-ETTEEEECTTTGGGS
T ss_pred CCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHhCCCEEe-cCCEEecCHHHHHHh
Confidence 478999999988753 23479999999999999998 445678888877654
No 260
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=20.24 E-value=1.4e+02 Score=23.96 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=39.0
Q ss_pred CCcchhhHHHHhCCCCCCCCCCCccCCCchhHHHHHHHHHHhCCcceecCCCCceeCcchHhhH
Q psy5605 57 SPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDM 120 (152)
Q Consensus 57 g~vGV~~L~~~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~glVek~~~gGR~lT~~G~~~L 120 (152)
||+.+..|...-|- +-..+|.+|..|..+|+++.++ +.-.+|+.++-++
T Consensus 49 ~~~t~~eLA~~~g~--------------~~~~l~rlLr~l~~~g~l~~~~-~~y~~t~~s~~L~ 97 (363)
T 3dp7_A 49 EGYTLQEISGRTGL--------------TRYAAQVLLEASLTIGTILLEE-DRYVLAKAGWFLL 97 (363)
T ss_dssp TCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEEEET-TEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCc--------------CHHHHHHHHHHHhhCCCeEecC-CEEecccchHHhh
Confidence 78999999887643 3345999999999999998864 5679999986544
Done!