RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5605
(152 letters)
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus
abyssi [TaxId: 29292]}
Length = 149
Score = 186 bits (475), Expect = 1e-62
Identities = 47/122 (38%), Positives = 71/122 (58%)
Query: 13 KSGKMKVPEWVDIVKSAKFKELAPYDPDWFYTRCAALARHIYMRSPVGVKTVTKIFGGRK 72
+ ++K PEW VK+ + KE P DW+Y R A++ R +Y+ PVG++ + +GGRK
Sbjct: 21 EIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGIERLRTYYGGRK 80
Query: 73 RNGVCPSHFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAAQIRVSKK 132
G P F ++ GS+ RKALQ LE +EK GR IT GR +D+IA +++ +
Sbjct: 81 NRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELKKELE 140
Query: 133 EA 134
E
Sbjct: 141 EI 142
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 29.3 bits (65), Expect = 0.064
Identities = 8/53 (15%), Positives = 18/53 (33%)
Query: 52 HIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVNIIEK 104
I+ + I G + CP C G + ++ + I+++
Sbjct: 28 CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQR 80
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 28.0 bits (62), Expect = 0.58
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 17 MKVPEWVDIVKSAKFKELAPYDPDWFYTRCAALARHIYMRSPVGVKTVTKIFGGRKRNGV 76
+ V ++ ++ Y + L I + V VK V +I G GV
Sbjct: 562 RRSKPGVTLISPPPHHDI--YSIEDLAQLIYDL-HQINPEAQVSVKLVAEIGIGTIAAGV 618
Query: 77 C 77
Sbjct: 619 A 619
>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase
{Enterobacter cloacae [TaxId: 550]}
Length = 363
Score = 26.8 bits (58), Expect = 1.1
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 20 PEWVDIVKSAKFKELAPYDPDWFYTR 45
P+ V + K EL P P+ FY
Sbjct: 329 PDLVA--RLQKKAELNPQRPESFYGG 352
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 71
Score = 24.6 bits (54), Expect = 1.9
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 127 IRVSKKEAALQALAAQGITVVPTGAV 152
IR S + ++ L + + ++ +
Sbjct: 43 IRPSNMDKCIEVLKEKKVDLLAASDL 68
>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 346
Score = 25.8 bits (56), Expect = 2.1
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 41 WFYTRCAALARHIYMRSPVGVKTVTKIFGGRKRNGVCPSHFCRSSGSVARKALQALEQVN 100
+ I +R +G + I+ GR + + S +R+ + L V+
Sbjct: 118 LNDAKEIVRDTVIILREELGFNDIHIIYSGRGYHIRVLDEWALKLDSKSRERI--LSFVS 175
Query: 101 IIEKSDDGGRKITSHGRR 118
E D + +R
Sbjct: 176 ASEIEDVEEFRKLLLNKR 193
>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida
[TaxId: 303]}
Length = 374
Score = 25.6 bits (55), Expect = 2.8
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 2/29 (6%)
Query: 20 PEWVDIVKSAKFKELAPYDPDWFYTRCAA 48
P+ + + L DP FY
Sbjct: 332 PDLPERFRLGA--ALNEPDPSTFYGGAEV 358
>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast
(Saccharomyces pastorianus) [TaxId: 27292]}
Length = 399
Score = 25.3 bits (54), Expect = 3.5
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 20 PEWVDIVKSAKFKELAPYDPDWFYT 44
P+ VD ++ L YD D FY
Sbjct: 354 PDLVDRLEKGL--PLNKYDRDTFYQ 376
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein
PrfA, C-terminal domain {Bacteria (Listeria
monocytogenes) [TaxId: 1639]}
Length = 100
Score = 24.4 bits (53), Expect = 4.1
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 22 WVDIVKSAKFKELAPYDPDWFYTRCAA 48
+ K AP +WFY C A
Sbjct: 68 CFYVQNLDYLKRYAPKLDEWFYLACPA 94
>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
homolog) {Thale cress (Arabidopsis thaliana), OPR3
[TaxId: 3702]}
Length = 380
Score = 25.3 bits (54), Expect = 4.3
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 20 PEWVDIVKSAKFKELAPYDPDWFYT 44
P+ V + EL Y+ FYT
Sbjct: 343 PDLVS--RFKIDGELNKYNRKTFYT 365
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 25.1 bits (53), Expect = 4.3
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 80 HFCRSSGSVARKALQALEQVNIIEKSDDGGRKITS 114
S R+ + L+ + + G+ ITS
Sbjct: 194 RILDISAGDLRRGITLLQSASKGAQYLGDGKNITS 228
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId:
4081]}
Length = 364
Score = 25.3 bits (54), Expect = 4.4
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 20 PEWVDIVKSAKFKELAPYDPDWFYT 44
P+ + L Y+ D FYT
Sbjct: 328 PDLPKRFELNA--PLNKYNRDTFYT 350
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 363
Score = 24.8 bits (54), Expect = 5.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 57 SPVGVKTVTKIFGGRKRNGVCP 78
SP GV IFGGR+ GV
Sbjct: 163 SPEGVPIEGIIFGGRRPAGVPL 184
>d1tuwa_ d.58.4.8 (A:) Tetracenomycin polyketide synthesis protein
TcmI {Streptomyces glaucescens [TaxId: 1907]}
Length = 106
Score = 24.0 bits (52), Expect = 5.5
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 20 PEWVDIVKSAKFKE-LAPYDPDWFYTRCAALARHIY 54
P + ++ + + + L PY DW + + A Y
Sbjct: 69 PLFQEV--NERVGQYLTPYAQDWEELK-DSKAEVFY 101
>d1v58a2 d.17.3.1 (A:2-61) Thiol:disulfide interchange protein DsbG,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 60
Score = 23.1 bits (50), Expect = 5.8
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 134 AALQALAAQGITVV 147
A ++A+ QGIT++
Sbjct: 4 APVKAIEKQGITII 17
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus
thermophilus [TaxId: 274]}
Length = 119
Score = 24.1 bits (52), Expect = 6.0
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 80 HFCRSSGSVARKALQALEQVNIIEKSDDGGRKITSHGRRDMDRIAAQIRVSKKEAALQAL 139
S G + K + + D +K ++G + +D + + + +E A++AL
Sbjct: 30 ITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVD-VIVRGTGAGREQAIRAL 88
Query: 140 AAQGITVV 147
A G+ V
Sbjct: 89 QASGLQVK 96
>d1umga_ d.280.1.1 (A:) ST0318 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 362
Score = 24.7 bits (54), Expect = 6.1
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 38 DPDWFYTRCAALARHIYMRS 57
DP + TR A YMR
Sbjct: 311 DPAFDETRRLANIVADYMRR 330
>d1vp5a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A
{Thermotoga maritima [TaxId: 2336]}
Length = 284
Score = 24.5 bits (52), Expect = 7.1
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 120 MDRIAAQIRVSKKEAALQALAAQGITVVP 148
+ IA + + + L+ L +GI +P
Sbjct: 203 LRSIAEKYGKTVAQVILRWLTQKGIVAIP 231
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 24.1 bits (51), Expect = 8.9
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 82 CRSSGSVARKALQALEQVNIIEK--SDDGGRKITS 114
+ R+A+ L+ ++K +D+ + S
Sbjct: 197 LYIAEGDMRRAINILQAAAALDKKITDENVFMVAS 231
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 190
Score = 23.9 bits (52), Expect = 9.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 84 SSGSVARKALQALEQVNII 102
S G A KAL+ E + ++
Sbjct: 41 SYGDTAMKALEMAEGLEVV 59
>d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis
indiana virus [TaxId: 11277]}
Length = 409
Score = 24.1 bits (52), Expect = 9.3
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 64 VTKIFGGRKRNGVCPSHFCRSSG 86
+ F C +C+ G
Sbjct: 206 RSNYFAYETGGKACKMQYCKHWG 228
>d1ro0a_ d.264.1.2 (A:) Bifunctional DNA primase/polymerase
N-terminal domain {Archaeon Sulfolobus islandicus
[TaxId: 43080]}
Length = 210
Score = 23.8 bits (51), Expect = 10.0
Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 27 KSAKFKELAPYDPDWFYTRCAALARHIYMRSP-VGVKTVTKIFGGRKRNGV 76
L T HIY+ S + + +F + +
Sbjct: 81 AWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLFEENGKGII 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.396
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 596,134
Number of extensions: 27466
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 30
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)