BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5607
(769 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21328|RTJK_DROME RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila melanogaster GN=pol PE=1 SV=1
Length = 916
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 182/398 (45%), Gaps = 12/398 (3%)
Query: 155 VGKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLI 214
VG FPK+W + I+ + K GK +YRP SLL GKI+E+++ RL + I
Sbjct: 487 VGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAI 546
Query: 215 NPFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKG- 273
FQ G R + T + L + A + + KE V LD Q+AFD W ++ K
Sbjct: 547 PKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYKAKRL 606
Query: 274 FNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDI---L 330
F Y++ + +FL R+F V +G S+ P+ G+ QGS L P L+ +F +D+
Sbjct: 607 FPPQLYLV--VKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHT 664
Query: 331 DIIKVPLRRLL---FIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKS 387
+ +V +L + DD V+ + K I +Q+ L+ +W+ + +A+ K
Sbjct: 665 PVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAE--KC 722
Query: 388 ACILFSRARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVL 447
A + F+ R + P + NG ++ K+LG+ D K+ ++ HI + + + +
Sbjct: 723 ANVTFAN-RTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARM 781
Query: 448 KMVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATGAL 507
+ + + + YKS + P YG VY A L K+ + +R +GA
Sbjct: 782 SWLIAPRNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAP 841
Query: 508 RSSPVTSLYVESGIPPLSYRRSKMMLNYVSKVGSCPSN 545
+ + +P L + + Y+ ++ P++
Sbjct: 842 WYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPNS 879
>sp|Q9NBX4|RTXE_DROME Probable RNA-directed DNA polymerase from transposon X-element
OS=Drosophila melanogaster GN=X-element\ORF2 PE=3 SV=1
Length = 908
Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 166/357 (46%), Gaps = 19/357 (5%)
Query: 158 FPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLINPF 217
FP W +I + KPGK P++YRPISLL K+ E+++ R+ ++E +G+
Sbjct: 488 FPYQWKLGIISMIHKPGKPEREPASYRPISLLPSISKVFERLIAVRIVSIMEAQGITPEH 547
Query: 218 QSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTW----RFKIIETLKG 273
Q G R T++ L + ++ KE +L LD ++AFD W + KI +TL
Sbjct: 548 QFGFRAGHCTVEQLHRVVEQILTAYDSKEYCNSLFLDIREAFDRVWHIGLQLKIKQTLPA 607
Query: 274 --FNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILD 331
F + L ++L R F V+ + + S + G+ QGS L P+L+ ++ +D+
Sbjct: 608 PYFGL-------LKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQ 660
Query: 332 -IIKVPLRRLL--FIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSA 388
+ + + +L F DD V R + IQ +W+ + + ++ +
Sbjct: 661 PDVSLYGKSMLATFADDVCVTYRSRCEHDAADGIQDFAYRFSEWARRWNIGINSSKSNNV 720
Query: 389 CILFSRARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLK 448
C R R P PP++ + + K+LG+ D ++ ++ H+ ++R +
Sbjct: 721 CFTLKR-RTP--PPVYIEEVPVPQPNAAKYLGVLLDRRLTFSKHVTDIRTRLRAKVAKHY 777
Query: 449 MVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATG 505
+ + + + LT YK + P + YGC ++ A D +K++ + N R+ TG
Sbjct: 778 WLLSSRSKLSLSNKLTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITG 834
>sp|Q95SX7|RTBS_DROME Probable RNA-directed DNA polymerase from transposon BS
OS=Drosophila melanogaster GN=RTase PE=2 SV=1
Length = 906
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 162/354 (45%), Gaps = 10/354 (2%)
Query: 158 FPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLINPF 217
FPK W + IL + KPGK P +YRPISLL+ K+ E+++ RL ++ R ++
Sbjct: 489 FPKQWKMAAILMIHKPGKPEESPESYRPISLLSSLSKLWERLIANRLNDIMTERRILPDH 548
Query: 218 QSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNIN 277
Q G R ST++ + L K Q KE A+ +D Q+AFD W +I +K
Sbjct: 549 QFGFRQGHSTVEQVHRLTKHILQAFDDKEYCNAVFIDMQQAFDRVWHDGLISKVKKLFPA 608
Query: 278 GYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDI----LDII 333
Y L ++L +R F V+ S+S ++ G+ QGS L P+L+ +F D+ +
Sbjct: 609 PYY-GVLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSVFTADLPCPNAYHM 667
Query: 334 KVPLRRLL--FIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACIL 391
P + LL + DD ++ +Q+ L + W + I +P+K+
Sbjct: 668 ADPRKALLATYADDIALLYSSNCCNEAARGLQEYLTTLAAWCKR--WILKVNPQKTINPC 725
Query: 392 FS-RARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMV 450
F+ + +P P+ G L S K+LG+ D ++ + H+ T R + L+ +
Sbjct: 726 FTLKTLSPVTAPIELEGVILDQPSQAKYLGITLDKRLTFGPHLKATTRRCYQRMQQLRWL 785
Query: 451 CNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIAT 504
N+K + Y + PI+ YG ++ A ++ + N +R T
Sbjct: 786 LNRKSTMTLRAKRAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAIT 839
>sp|P21329|RTJK_DROFU RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila funebris GN=jockey\pol PE=1 SV=1
Length = 916
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 178/400 (44%), Gaps = 16/400 (4%)
Query: 155 VGKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLI 214
VG FPK+ + I+ +LKPGK L +YRP SLL GK+LE+++ R+ E I
Sbjct: 487 VGYFPKARPTASIIMILKPGKQPLDVDSYRPTSLLPSLGKMLERLILNRILTSEEVTRAI 546
Query: 215 NPFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGF 274
FQ G R + T + L + A + L KKE + LD Q+AFD W ++ K
Sbjct: 547 PKFQFGFRLQHGTPEQLHRVVNFALEALEKKEYAGSCFLDIQQAFDRVWHPGLLYKAKSL 606
Query: 275 NINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMND------ 328
++ + + + +F R F V +G S+ ++ G+ QGS L P L+ IF D
Sbjct: 607 -LSPQLFQLIKSFWEGRKFSVTADGCRSSVKFIEAGVPQGSVLGPTLYSIFTADMPNQNA 665
Query: 329 ILDIIKVPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSA 388
+ + + + + DD V+ + I +Q+ L+ +W+ + + S + K A
Sbjct: 666 VTGLAEGEVLIATYADDIAVLTKSTCIVEATDALQEYLDAFQEWAVKWNV--SINAGKCA 723
Query: 389 CILFSRARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHI---NHTKSRAMVALN 445
+ F+ A P + NGS L K+LG+ D + + HI H+ + +N
Sbjct: 724 NVTFTNAIRDC-PGVTINGSLLSHTHEYKYLGVILDRSLTFRRHITSLQHSFRTRITKMN 782
Query: 446 VLKMVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATG 505
L NK + + + YK + P Y VY A L K+ + +R +G
Sbjct: 783 WLLAARNK---LSLDNKVKIYKCIVAPGLFYAIQVYGIAARTHLNKIRVLQAKMLRKISG 839
Query: 506 ALRSSPVTSLYVESGIPPLSYRRSKMMLNYVSKVGSCPSN 545
A + + +P + + ++ Y ++ S P++
Sbjct: 840 APWYMRTRDIECDLKVPKIGDKIREVAKKYHERLDSHPNS 879
>sp|Q03277|PO11_SCICO Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 (Fragment) OS=Sciara coprophila PE=4 SV=1
Length = 1004
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/380 (23%), Positives = 164/380 (43%), Gaps = 28/380 (7%)
Query: 122 DMDMDIVPEKGKKRALTQSPPPQDNEKKFDFSSVGK-----------------FPKSWGE 164
D++MD V + ++ + +SP P + + G FP+ W
Sbjct: 404 DLEMDEVSDSVRRCKVRKSPGPDGIVGEMVRAVWGAIPEYMFCLYKQCLLESYFPQKWKI 463
Query: 165 SLILPLLKP-GKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLINPFQSGGRF 223
+ ++ LLK + R P +YRPI LL+ GK+LE ++ KRL L + ++P+Q +
Sbjct: 464 ASLVILLKLLDRIRSDPGSYRPICLLDNLGKVLEGIMVKRLDQKLMDVE-VSPYQFAFTY 522
Query: 224 RRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYMLRY 283
+ST D +++ ++ + + L +D Q AFD ++ L N + L +
Sbjct: 523 GKSTEDAWRCVQRHVE--CSEMKYVIGLNIDFQGAFDNLGWLSMLLKLDEAQSNEFGL-W 579
Query: 284 LCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDIL-DIIKVPLRRLLF 342
+ F + + V G + G QGS P ++ + MN++L ++ + F
Sbjct: 580 MSYFGGRKVYYVGKTGIVRKD--VTRGCPQGSKSGPAMWKLVMNELLLALVAAGFFIVAF 637
Query: 343 IDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACILFSRARNPTFPP 402
DD ++ L + L +W + + SA K+ CIL + PP
Sbjct: 638 ADDGTIVIGANSRSALEELGTRCLQLCHEWGKRVCVPVSAG--KTTCILMKGHLSANRPP 695
Query: 403 LF-YNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNKKYGVRRET 461
NG+ + ++S +K LG++ +MN+ H + + + + + L+ V K +G+ R
Sbjct: 696 CIRLNGTSISYKSEVKHLGIFVAERMNFRPHFVYLRGKILGLVGCLRRVMRKSWGLGRRA 755
Query: 462 LLTFYKSYIMPIFDYGCIVY 481
YK + YG V+
Sbjct: 756 TCILYKGLFVACMSYGASVW 775
>sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1 retrotransposable element R1DM
OS=Drosophila melanogaster PE=4 SV=1
Length = 1021
Score = 86.3 bits (212), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 87/389 (22%), Positives = 155/389 (39%), Gaps = 14/389 (3%)
Query: 155 VGKFPKSWGESLILPLLK-PGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGL 213
+G FP W ++ LLK P KD+ PS+YR I LL GK+LE ++ R+ VL
Sbjct: 483 LGYFPAEWKCPRVVSLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEG-- 540
Query: 214 INPFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKG 273
+Q G FR+ + +++ G + + + +D + AFD + L
Sbjct: 541 -CRWQFG--FRQGRCVEDAWRHVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLAD 597
Query: 274 FNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILDII 333
L +F R ++ + S + P+ G QGS P ++ I M+ +L +
Sbjct: 598 LGCREMGLWQ--SFFSGRRAVIR-SSSGTVEVPVTRGCPQGSISGPFIWDILMDVLLQRL 654
Query: 334 KVPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACILFS 393
+ + + DD L++ G +L K + ++ + W + G S K+ +L
Sbjct: 655 QPYCQLSAYADDLLLLVEGNSRAVLEEKGAQLMSIVETWGAEVGDCLST--SKTVIMLLK 712
Query: 394 RARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNK 453
A P + + G L + + ++LG+ M + HI + R + L V
Sbjct: 713 GALRRA-PTVRFAGRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARVLRA 771
Query: 454 KYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYIL--KKLNPVHNAGIRIATGALRSSP 511
+G T Y + P +G V+ + + ++L + R+
Sbjct: 772 DWGFSPRARRTIYDGLMAPCVLFGAPVWYDTAEQVAAQRRLASCQRLILLGCLSVCRTVS 831
Query: 512 VTSLYVESGIPPLSYRRSKMMLNYVSKVG 540
+L V G PPL + + Y K G
Sbjct: 832 TVALQVLGGAPPLDLAAKLLAIKYKLKRG 860
>sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=1
SV=1
Length = 1260
Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 42/261 (16%)
Query: 156 GKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLIN 215
G P ++ E+ I + KPGKD NYRPISL+N KIL K++ R+ + + +I+
Sbjct: 502 GILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHI--KKIIH 559
Query: 216 PFQSG------GRFR-RSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKII 268
Q G G F R +I+ + + K K + + L +D +KAFD +I
Sbjct: 560 HDQVGFIPGSQGWFNIRKSINVIQHINK------LKNKDHMILSIDAEKAFDNIQHPFMI 613
Query: 269 ETLKGFNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMND 328
TLK I G L+ + + + NG SFPL++G QG LSP+LF N
Sbjct: 614 RTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLF----NI 669
Query: 329 ILDIIKVPLRRL----------------LFIDDFLVIARGKVIELLRIKIQKALNDILKW 372
+++++ + +R LF DD +V +E R K L I ++
Sbjct: 670 VMEVLAIAIREEKAIKGIHIGSEEIKLSLFADDMIV-----YLENTRDSTTKLLEVIKEY 724
Query: 373 SNQNGLIFSADPKKSACILFS 393
SN +G + + KS +++
Sbjct: 725 SNVSG--YKINTHKSVAFIYT 743
>sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis
PE=4 SV=1
Length = 1308
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 136/290 (46%), Gaps = 39/290 (13%)
Query: 156 GKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLIN 215
G+ P S +++ L K G RL+ N+RP+SLL+ KI+ K ++ RL VL +I+
Sbjct: 499 GELPLSCRRAVLSLLPKKGDLRLI-KNWRPVSLLSTDYKIVAKAISLRLKSVLAE--VIH 555
Query: 216 PFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALL-LDGQKAFDMTWRFKIIETLKGF 274
P QS R+ DN VFL ++ + ++A L LD +KAFD +I TL+ +
Sbjct: 556 PDQSYTVPGRTIFDN-VFLIRDLLHFARRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAY 614
Query: 275 NINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILDIIK 334
+ + YL + VK N S + G+ QG LS L+ + + L +++
Sbjct: 615 SFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIEPFLCLLR 674
Query: 335 VPLRRLL------------FIDDFLVIARGKVIELLRIK-----IQKALNDILKWSNQNG 377
L L+ + DD +++A+ +++L R + A + + WS +G
Sbjct: 675 KRLTGLVLKEPDMRVVLSAYADDVILVAQ-DLVDLERAQECQEVYAAASSARINWSKSSG 733
Query: 378 LIFSADPKKSACILFSRARNPTFPPLFYNGSELKFESN-IKFLGLYWDAK 426
L+ + S + F PP F ++ +ES IK+LG+Y A+
Sbjct: 734 LL-----EGSLKVDF-------LPPAF---RDISWESKIIKYLGVYLSAE 768
>sp|P11369|POL2_MOUSE Retrovirus-related Pol polyprotein LINE-1 OS=Mus musculus GN=Pol
PE=1 SV=2
Length = 1281
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 34/240 (14%)
Query: 156 GKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLIN 215
G P S+ E+ I + KP KD N+RPISL+N KIL K++ R+ + + +I+
Sbjct: 510 GTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHI--KAIIH 567
Query: 216 PFQSG------GRFR-RSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKII 268
P Q G G F R +I+ + ++ K K + + + LD +KAFD +I
Sbjct: 568 PDQVGFIPGMQGWFNIRKSINVIHYINK------LKDKNHMIISLDAEKAFDKIQHPFMI 621
Query: 269 ETLKGFNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMND 328
+ L+ I G L + +K NG + PL++G QG LSP LF N
Sbjct: 622 KVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLF----NI 677
Query: 329 ILDIIKVPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSA 388
+L+++ +R+ I +G I +KI +D+ +++ +DPK S
Sbjct: 678 VLEVLARAIRQQKEI-------KGIQIGKEEVKISLLADDM--------IVYISDPKNST 722
>sp|Q03269|PO11_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 337
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 103/223 (46%), Gaps = 12/223 (5%)
Query: 310 GIVQGSSLSPVLFIIFMNDILDIIKVPLRRLL-FIDDFLVIARGKV-IELLRIKIQKALN 367
G QGS P ++ + MN +LD + R++ + DD +++A G +E+ R+ + +
Sbjct: 1 GCPQGSISGPYMWNLCMNGLLDRLSAMNERIVAYADDLMIVANGNSRMEMERMA-DECMR 59
Query: 368 DILKWSNQNGLIFSADPKKSACILFSRARNPTFPPLFYNGSE-----LKFESNIKFLGLY 422
+ +W + G+ S KK+ CI+ N + +E + + + ++LG+
Sbjct: 60 IVYEWGREVGVSIS--EKKTVCIMLKGKLNVDGRRMRVAVAEGTISSIGYVKSARYLGVC 117
Query: 423 WDAKMNWALHINHTKSRAMVALNVLKMVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYS 482
+M++A I ++ M A+ L+ V K++GV+++T T+ K ++ YG V+
Sbjct: 118 MGERMSFADDIRGLITKVMGAIGGLRRVMRKEWGVKKKTAYTWAKGLLLAGVMYGSSVWY 177
Query: 483 SAKDY--ILKKLNPVHNAGIRIATGALRSSPVTSLYVESGIPP 523
Y + + +N + + R+ ++ V G P
Sbjct: 178 EGMKYKTMRESMNSIQRCAMYACLRVCRTVSTEAMQVLLGWLP 220
>sp|Q03274|PO22_POPJA Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R2 (Fragment) OS=Popillia japonica PE=4 SV=1
Length = 711
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 6/176 (3%)
Query: 156 GKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLIN 215
G P W ++ L+ D PSN+RPI++ + ++L +++ KRL +E ++
Sbjct: 50 GHVPTPW-TAMRTTLIPKDGDLENPSNWRPITIASALQRLLHRILAKRLEAAVE----LH 104
Query: 216 PFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFN 275
P Q G T+ N + L+ + +++ + LD +KAFD I L+
Sbjct: 105 PAQKGYARIDGTLVNSLLLDTYISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLG 164
Query: 276 INGYMLRYLCNFLYNRSFKVKCN-GSFSNSFPLQNGIVQGSSLSPVLFIIFMNDIL 330
I+ Y+ L + + ++ GS + ++ G+ QG LSP LF ++++L
Sbjct: 165 IDEGTSNYITGSLSDSTTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELL 220
>sp|P16423|POLR_DROME Retrovirus-related Pol polyprotein from type-2 retrotransposable
element R2DM OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1057
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 109/273 (39%), Gaps = 49/273 (17%)
Query: 180 PSNYRPIS----LLNCSGKILEKMVNKRLFWVLENRGLINPFQSGGRFRRSTIDNLVFLE 235
P ++RPIS L+ IL +N + W RG + + G +TI +LV
Sbjct: 412 PQDFRPISVPSVLVRQLNAILATRLNSSINWDPRQRGFL---PTDGCADNATIVDLVLRH 468
Query: 236 KEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYMLRYLCNFLYNRSFKV 295
+ C +A L D KAFD I +TL+ + + Y+ N +
Sbjct: 469 SHKH----FRSCYIANL-DVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSL 523
Query: 296 KCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILDIIKVPL---------RRLLFIDDF 346
+G S F G+ QG LSP+LF + M+ +L + + F DD
Sbjct: 524 NGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEIGAKVGNAITNAAAFADDL 583
Query: 347 LVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSAD----------PKKSACILFSRAR 396
++ A R+ +Q L+ L + + GL +AD PK+ +L +++
Sbjct: 584 VLFAE------TRMGLQVLLDKTLDFLSIVGLKLNADKCFTVGIKGQPKQKCTVLEAQS- 636
Query: 397 NPTFPPLFYNGS----ELKFESNIKFLGLYWDA 425
FY GS LK K+LG+ + A
Sbjct: 637 -------FYVGSSEIPSLKRTDEWKYLGINFTA 662
>sp|Q05118|PO23_POPJA Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R2 (Fragment) OS=Popillia japonica PE=4 SV=1
Length = 606
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%)
Query: 226 STIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYMLRYLC 285
T+ N++ LE K + + LD +KAFD I+ ++ F I+ M ++
Sbjct: 1 GTLANIIMLEHYIKLRRLKGKTYNVVSLDIRKAFDTVSHPAILRAMRAFGIDDGMQDFIM 60
Query: 286 NFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDIL 330
+ + + + G +N ++NG+ QG LSPVLF I +++++
Sbjct: 61 STITDAYTNIVVGGRTTNKIYIRNGVKQGDPLSPVLFNIVLDELV 105
>sp|Q03270|PO12_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 2 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 410
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 12/175 (6%)
Query: 310 GIVQGSSLSPVLFIIFMNDIL-DIIKVPLRRLLFIDDFLVIARGKVIELLRIKIQKALND 368
G QGS P+L+ + MN +L ++ + F DD ++A G + + I + +
Sbjct: 1 GCPQGSIGGPILWNLSMNGMLIELAGSGVSVCAFADDVAILAEGNTRKEVERVINEKMEI 60
Query: 369 ILKWSNQNGLIFSADPKKSACILF-------SRARNPTFPPLFYNGSELKFESNIKFLGL 421
+ KW + G+ S +K+ C+L +RA + Y +K+ S ++LG+
Sbjct: 61 VYKWGEKMGV--SVSEEKTVCMLLKGKYVTSNRAVRVSKTINVYK--RIKYVSCFRYLGV 116
Query: 422 YWDAKMNWALHINHTKSRAMVALNVLKMVCNKKYGVRRETLLTFYKSYIMPIFDY 476
M + H+ K + + LK V + +G+RR + +P Y
Sbjct: 117 NVTEGMGFGEHVRGMKVKVAKGVQKLKRVLRRDWGLRRAASHLVLRGTFLPQVSY 171
>sp|Q03271|PO13_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 3 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 383
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 342 FIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACILFSRARN--PT 399
F DD L++ +G L +AL+ + ++ G+ S K+ C++ + N
Sbjct: 4 FADDLLLLVQGNRRNELEQSASEALSVVYRYGTNIGVEVS--DSKTVCMMLKGSLNMLNR 61
Query: 400 FPPLFYNGSE---LKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNKKYG 456
+ NG + ++ +++LG+ M++++HI+ K R A+ L+ V K +G
Sbjct: 62 VVHVSTNGMDDKRIRCVDRVRYLGVNVGIGMDFSVHIDGMKRRLTTAIMRLRGVLRKSWG 121
Query: 457 VRRETLLTFYKSYIMPIFDYGCIVY 481
++R + K +P YG V+
Sbjct: 122 LKRGVVSMVVKGLFLPAVMYGASVW 146
>sp|Q03272|PO14_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 4 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 392
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 55/119 (46%)
Query: 406 NGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNKKYGVRRETLLTF 465
G + FE ++++LG+++DA + + H + + + + + L+ + ++G+ + L T
Sbjct: 81 GGKSISFEQSVRYLGVHFDANLGISAHCKYLREKLVPLFSDLRKLAQCQWGLGHKALETI 140
Query: 466 YKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATGALRSSPVTSLYVESGIPPL 524
YK +P Y + + + L +H + T RS+ + V +G P+
Sbjct: 141 YKGVFVPTVCYASARWYKEGAHTDRILEDLHRQILIAITRCYRSTSYEAACVLAGTLPI 199
>sp|Q03278|PO21_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R2 (Fragment) OS=Nasonia vitripennis PE=4 SV=2
Length = 1025
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 119/288 (41%), Gaps = 29/288 (10%)
Query: 106 GHMKNLAPPTDSNESIDMDMDIVPEKGKKRALTQSPPPQDNEKKFDFSSV---GKFPKSW 162
G +KNL P ++E +++ G T + D K F+ + G+ P+ +
Sbjct: 310 GEIKNLWRPISNDEIKEVEACKRTAAGPDGMTTTAWNSIDECIKSLFNMIMYHGQCPRRY 369
Query: 163 GESLILPLLK-PGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLINPFQSGG 221
+S + + K PG + P+ +RP+S+ + + + +++ R+ GL++ Q
Sbjct: 370 LDSRTVLIPKEPGT--MDPACFRPLSIASVALRHFHRILANRIG----EHGLLDTRQRAF 423
Query: 222 RFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYML 281
+N L + K + +LD +KAFD I++ L+ + M
Sbjct: 424 IVADGVAENTSLLSAMIKEARMKIKGLYIAILDVKKAFDSVEHRSILDALRRKKLPLEMR 483
Query: 282 RYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILDIIKVP----- 336
Y+ N +++ + G+ QG LSP+LF M+ +L ++P
Sbjct: 484 NYIMWVYRNSKTRLEVVKTKGRWIRPARGVRQGDPLSPLLFNCVMDAVLR--RLPENTGF 541
Query: 337 ------LRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGL 378
+ L+F DD +++A R +Q +L+ I + GL
Sbjct: 542 LMGAEKIGALVFADDLVLLAE------TREGLQASLSRIEAGLQEQGL 583
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 642 HSKFLLVSDSMSAI------QAIANICSSYKNSLTSKIYSAWMDLKSGGKEVTLMWCPSH 695
H+ L + DS S + Q + I +S I ++L G +++ L W P+H
Sbjct: 1076 HAVKLALEDSGSYVNIVTDSQYVVGILASRPTETDHPIVKEIIELMKGKEKIYLSWLPAH 1135
Query: 696 CGISGNEAVD 705
GI GNE +D
Sbjct: 1136 KGIGGNEQID 1145
>sp|Q9QBZ1|POL_HV1M2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP257) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 36.6 bits (83), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 616 NISPSVFQKHFLDAISSKYNDCIYLPHSKFLLVSDSMSAIQAIANICSSYKNSLTSKIYS 675
+++ + QK L AI D S+ +V+DS A+ I ++ + S+I +
Sbjct: 1054 SLTETTNQKTELQAIQLALQDS----GSEVNIVTDSQYAL----GIIQAHPDKSESEIVN 1105
Query: 676 AWMDLKSGGKEVTLMWCPSHCGISGNEAVD 705
++ + V L W P+H GI GNE VD
Sbjct: 1106 QIIEQLIQKERVYLSWVPAHKGIGGNEQVD 1135
>sp|Q11075|YWV1_CAEEL Uncharacterized protein B0403.1 OS=Caenorhabditis elegans
GN=B0403.1 PE=4 SV=1
Length = 198
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 419 LGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNKKYGVRRETLLTFYKSYIMPIFDYGC 478
L ++ D K+N+ HI + + A + L + C + V Y Y+ P+ +YGC
Sbjct: 13 LDIFVDCKLNFQKHIEYVSNSAFLKCRQL-LRCFRFTNV--SLYFKLYNVYVQPLLNYGC 69
Query: 479 IVYSSAKDYILKKL 492
VY+ ++K L
Sbjct: 70 EVYNPNSKRLIKLL 83
>sp|Q75002|POL_HV1ET Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag-pol PE=3 SV=3
Length = 1439
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 616 NISPSVFQKHFLDAISSKYNDCIYLPHSKFLLVSDSMSAIQAIANICSSYKNSLTSKIYS 675
+++ + QK L AI D S+ +V+DS A+ I + + S+I +
Sbjct: 1059 SLTETTNQKTELQAIQLALQDS----GSEVNIVTDSQYAL----GIILAQPDKSESEIVN 1110
Query: 676 AWMDLKSGGKEVTLMWCPSHCGISGNEAVD 705
++ + V L W P+H GI GNE VD
Sbjct: 1111 QIIEQLISKERVYLSWVPAHKGIGGNEQVD 1140
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 647 LVSDSMSAIQAIANICSSYKNSLTSKIYSAWMDLKSGGKEVTLMWCPSHCGISGNEAVD 705
+V+DS A+ I++ + ++ + +I ++ + ++V L W P+H GI GNE +D
Sbjct: 1081 IVTDSQYALGVISSQPTQSESPIVQQI----IEELTKKEQVYLTWVPAHKGIGGNEKID 1135
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 647 LVSDSMSAIQAIANICSSYKNSLTSKIYSAWMDLKSGGKEVTLMWCPSHCGISGNEAVD 705
+V+DS Q + I SS S I ++ + + V L W P+H GI GNE +D
Sbjct: 1083 IVTDS----QYVLGIISSQPTQSDSPIVQQIIEELTKKERVYLTWVPAHKGIGGNEKID 1137
>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster
GN=ncm PE=1 SV=3
Length = 1330
Score = 33.5 bits (75), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 84 QIVKVRKSKSTPIKVTSGCGQGGHMKNLA----PPT----DSNESIDMDMDIVPEKGKKR 135
++ + RK + P+ T+G + ++ A PPT + E D D D +P K +K+
Sbjct: 157 ELEERRKDEEQPV-TTNGSSKESPVEAAAETVKPPTADHIEEGEITDKDEDDLPTKEEKK 215
Query: 136 ALTQSPPPQDNEKKFDFSSVGK 157
A+ PP++ ++K S GK
Sbjct: 216 AVASKSPPKETQRKQSRSPDGK 237
>sp|O70338|RNH1_MOUSE Ribonuclease H1 OS=Mus musculus GN=Rnaseh1 PE=2 SV=1
Length = 285
Score = 33.1 bits (74), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 643 SKFLLVSDSMSAIQAIANICSSYKNS---------LTSKIYSAWMDLKSGGKEVTLMWCP 693
SK +L +DSM I I N +K + + +K +D + G ++ M P
Sbjct: 202 SKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGMDIQWMHIP 261
Query: 694 SHCGISGNEAVDMAAKNPCTSTQ 716
H G GNE D A+ ++
Sbjct: 262 GHSGFVGNEEADRLAREGAKQSE 284
>sp|Q5BK46|RNH1_RAT Ribonuclease H1 OS=Rattus norvegicus GN=Rnaseh1 PE=2 SV=1
Length = 285
Score = 33.1 bits (74), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 643 SKFLLVSDSMSAIQAIANICSSYKNS---------LTSKIYSAWMDLKSGGKEVTLMWCP 693
SK +L +DSM I I N +K + + +K +D + G ++ M P
Sbjct: 202 SKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGMDIQWMHIP 261
Query: 694 SHCGISGNEAVDMAAKNPCTSTQ 716
H G GNE D A+ ++
Sbjct: 262 GHSGFVGNEEADRLAREGAKQSE 284
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 292,599,396
Number of Sequences: 539616
Number of extensions: 12599521
Number of successful extensions: 24363
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 24318
Number of HSP's gapped (non-prelim): 37
length of query: 769
length of database: 191,569,459
effective HSP length: 125
effective length of query: 644
effective length of database: 124,117,459
effective search space: 79931643596
effective search space used: 79931643596
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)