Query psy5610
Match_columns 237
No_of_seqs 175 out of 1693
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 21:58:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.8 3.9E-19 1.3E-23 138.5 9.2 92 1-97 48-151 (154)
2 3qio_A GAG-POL polyprotein; RN 99.8 5.3E-19 1.8E-23 137.1 9.2 88 1-97 47-147 (150)
3 3h08_A RNH (ribonuclease H); R 99.8 6.3E-19 2.1E-23 136.0 6.7 85 2-97 43-144 (146)
4 2kq2_A Ribonuclease H-related 99.7 1.6E-19 5.4E-24 139.7 1.5 90 1-98 48-138 (147)
5 1jl1_A Ribonuclease HI; RNAse 99.7 3E-18 1E-22 133.6 8.3 91 1-98 42-144 (155)
6 3p1g_A Xenotropic murine leuke 99.7 4.1E-18 1.4E-22 134.0 8.5 89 1-97 61-156 (165)
7 2e4l_A Ribonuclease HI, RNAse 99.7 4.5E-18 1.6E-22 133.0 8.5 89 2-97 45-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.7 5.4E-18 1.8E-22 133.6 6.5 91 1-98 46-149 (166)
9 2lsn_A Reverse transcriptase; 99.6 5.3E-16 1.8E-20 121.8 8.8 89 3-97 56-163 (165)
10 3hst_B Protein RV2228C/MT2287; 99.6 4.7E-15 1.6E-19 113.1 10.2 88 1-97 44-133 (141)
11 1mu2_A HIV-2 RT; HIV-2 reverse 99.6 3.3E-15 1.1E-19 138.4 9.9 83 1-95 471-555 (555)
12 2zd1_A Reverse transcriptase/r 99.6 2.4E-15 8.2E-20 139.3 8.3 82 1-94 474-557 (557)
13 2ehg_A Ribonuclease HI; RNAse 99.6 3.7E-15 1.3E-19 115.0 7.8 88 1-97 46-134 (149)
14 3u3g_D Ribonuclease H, RNAse H 99.6 1.1E-14 3.8E-19 110.6 9.5 87 2-97 44-137 (140)
15 1zbf_A Ribonuclease H-related 98.6 6.8E-09 2.3E-13 79.2 2.0 82 1-89 49-139 (142)
16 4htu_A Ribonuclease H, RNAse H 98.1 4.5E-06 1.5E-10 62.6 6.5 41 1-47 43-83 (134)
17 3alr_A Nanos protein; zinc-fin 71.2 2.3 8E-05 29.6 2.2 28 180-207 72-99 (106)
18 1rw3_A POL polyprotein; RNA an 48.8 12 0.00042 32.9 3.4 40 2-46 388-427 (455)
19 2lnd_A De novo designed protei 48.8 14 0.00046 24.6 2.8 45 53-97 36-80 (112)
20 2x5c_A Hypothetical protein OR 33.5 7.6 0.00026 26.6 -0.3 29 155-192 37-65 (131)
21 2akl_A PHNA-like protein PA012 30.1 24 0.00084 25.6 1.8 25 178-202 26-51 (138)
22 1k81_A EIF-2-beta, probable tr 27.8 20 0.00068 19.8 0.8 11 181-191 2-12 (36)
23 1l8d_A DNA double-strand break 22.5 21 0.0007 24.8 0.3 13 179-191 47-59 (112)
24 2qgp_A HNH endonuclease; Q39X4 21.2 30 0.001 24.2 1.0 18 178-195 34-56 (112)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.78 E-value=3.9e-19 Score=138.48 Aligned_cols=92 Identities=26% Similarity=0.350 Sum_probs=71.8
Q ss_pred ChhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhccc---------CCC--hH-HHHHHHHHHHhhcCC
Q psy5610 1 MATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIF---------SLN--PI-AGEIRDLILTNKSKL 68 (237)
Q Consensus 1 ~~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~~~---------~~~--~~-~~~i~~~~~~l~~~~ 68 (237)
++|++||+.|++.||+.+ ...+..+|.|+|||+++++.|.++. ..+ ++ ...+.+.+..+....
T Consensus 48 ~tn~~aEl~A~~~aL~~~-----~~~~~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~ 122 (154)
T 2qkb_A 48 QTNQRAEIHAACKAIEQA-----KTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGM 122 (154)
T ss_dssp CCHHHHHHHHHHHHHHHH-----HHTTCCEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHHH-----HhCCCceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCC
Confidence 479999999999999995 3446789999999999999998742 111 11 123333344444556
Q ss_pred cEEEEEecCCCCCcCChHHHHHHHHhhhc
Q psy5610 69 NVRFIWVPSHVGIAGNEEADRLAKEALTS 97 (237)
Q Consensus 69 ~v~~~wvp~H~g~~gNe~ad~~a~~a~~~ 97 (237)
+|.|.|||||+|++||+.||+||++|+..
T Consensus 123 ~v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 123 DIQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp EEEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred ceEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 79999999999999999999999999875
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.78 E-value=5.3e-19 Score=137.11 Aligned_cols=88 Identities=28% Similarity=0.409 Sum_probs=68.1
Q ss_pred ChhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhccc-----------CCChHH-H-HHHHHHHHhhcC
Q psy5610 1 MATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIF-----------SLNPIA-G-EIRDLILTNKSK 67 (237)
Q Consensus 1 ~~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~~~-----------~~~~~~-~-~i~~~~~~l~~~ 67 (237)
++|++||+.|++.||+. . ..++.|+|||++++++|++|. ...++. . .+.+++..+.+.
T Consensus 47 ~Tnn~aEl~A~i~AL~~-----~----~~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~ 117 (150)
T 3qio_A 47 TTNQKTELQAIYLALQD-----S----GLEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKK 117 (150)
T ss_dssp CCHHHHHHHHHHHHHHH-----S----CSEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHh-----C----CCcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhc
Confidence 47999999999999998 2 379999999999999999862 111221 1 223333344456
Q ss_pred CcEEEEEecCCCCCcCChHHHHHHHHhhhc
Q psy5610 68 LNVRFIWVPSHVGIAGNEEADRLAKEALTS 97 (237)
Q Consensus 68 ~~v~~~wvp~H~g~~gNe~ad~~a~~a~~~ 97 (237)
.+|.|.|||||+|++|||.||+||++|+..
T Consensus 118 ~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 118 EKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp SEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred CceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 679999999999999999999999999865
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.76 E-value=6.3e-19 Score=136.04 Aligned_cols=85 Identities=24% Similarity=0.227 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhc-cc-----------CC-----ChHHHHHHHHHHHh
Q psy5610 2 ATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQN-IF-----------SL-----NPIAGEIRDLILTN 64 (237)
Q Consensus 2 ~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~-~~-----------~~-----~~~~~~i~~~~~~l 64 (237)
+|++||+.|++.||+.+ .. ..++.|+|||+++++.|++ |. .. .++.+.+.+++
T Consensus 43 Tnn~aEl~A~~~AL~~~-----~~--~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~--- 112 (146)
T 3h08_A 43 TNNRMELMAAIKGLEAL-----KE--PARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLT--- 112 (146)
T ss_dssp CHHHHHHHHHHHHHHTC-----SS--CCEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHH---
T ss_pred cHHHHHHHHHHHHHHhc-----Cc--cCcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHH---
Confidence 68999999999999994 32 4799999999999999987 31 01 12333333333
Q ss_pred hcCCcEEEEEecCCCCCcCChHHHHHHHHhhhc
Q psy5610 65 KSKLNVRFIWVPSHVGIAGNEEADRLAKEALTS 97 (237)
Q Consensus 65 ~~~~~v~~~wvp~H~g~~gNe~ad~~a~~a~~~ 97 (237)
...+|.|.|||||+|++||+.||+||++|+..
T Consensus 113 -~~~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 113 -TLHRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp -HHSEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred -hhCceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 34579999999999999999999999999865
No 4
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.75 E-value=1.6e-19 Score=139.68 Aligned_cols=90 Identities=21% Similarity=0.126 Sum_probs=73.3
Q ss_pred ChhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhc-ccCCChHHHHHHHHHHHhhcCCcEEEEEecCCC
Q psy5610 1 MATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQN-IFSLNPIAGEIRDLILTNKSKLNVRFIWVPSHV 79 (237)
Q Consensus 1 ~~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~-~~~~~~~~~~i~~~~~~l~~~~~v~~~wvp~H~ 79 (237)
++|++||+.|++.||++++. .+. +|.|+|||+.+.+.+.+ |...++....+.+++.++.. +|.|.|||||+
T Consensus 48 ~tNn~aEl~A~~~AL~~a~~-----~~~-~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~--~v~~~wV~gH~ 119 (147)
T 2kq2_A 48 MRNVAGEIAAALYAVKKASQ-----LGV-KIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRG--IYSFEKVKAHS 119 (147)
T ss_dssp TCTTHHHHHHHHHHHHHHHH-----HTC-CCCBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGST--TCCBCCCCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHH-----CCC-eEEEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhcC--CeeEEEecCcC
Confidence 47999999999999999643 234 89999999988877765 44444555666677666644 89999999999
Q ss_pred CCcCChHHHHHHHHhhhcC
Q psy5610 80 GIAGNEEADRLAKEALTST 98 (237)
Q Consensus 80 g~~gNe~ad~~a~~a~~~~ 98 (237)
|++|||.||+||++|+...
T Consensus 120 g~~~Ne~AD~LA~~a~~~~ 138 (147)
T 2kq2_A 120 GNEFNDYVDMKAKSALGIR 138 (147)
T ss_dssp CCHHHHHHHHHHHHHHTCC
T ss_pred CCcchHHHHHHHHHHHhcc
Confidence 9999999999999999874
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.74 E-value=3e-18 Score=133.61 Aligned_cols=91 Identities=22% Similarity=0.369 Sum_probs=70.9
Q ss_pred ChhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhccc---------CC--ChHH-HHHHHHHHHhhcCC
Q psy5610 1 MATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIF---------SL--NPIA-GEIRDLILTNKSKL 68 (237)
Q Consensus 1 ~~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~~~---------~~--~~~~-~~i~~~~~~l~~~~ 68 (237)
++|++||+.|++.||+.+ .. ..++.|+|||+++++.|.+|. .. .++. ..+...+..+....
T Consensus 42 ~tn~~aEl~A~~~aL~~~-----~~--~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~ 114 (155)
T 1jl1_A 42 TTNNRMELMAAIVALEAL-----KE--HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 (155)
T ss_dssp ECHHHHHHHHHHHHHHTC-----CS--CCEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTC
T ss_pred CcHHHHHHHHHHHHHHHh-----Cc--CCcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHccC
Confidence 368999999999999994 32 379999999999999999731 11 1221 23344444444556
Q ss_pred cEEEEEecCCCCCcCChHHHHHHHHhhhcC
Q psy5610 69 NVRFIWVPSHVGIAGNEEADRLAKEALTST 98 (237)
Q Consensus 69 ~v~~~wvp~H~g~~gNe~ad~~a~~a~~~~ 98 (237)
.|.|.|||||+|++||+.||+||++|+..+
T Consensus 115 ~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 144 (155)
T 1jl1_A 115 QIKWEWVKGHAGHPENERADELARAAAMNP 144 (155)
T ss_dssp EEEEEECCSSTTCHHHHHHHHHHHHHHHSC
T ss_pred ceEEEEcCCCCCCHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999873
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.74 E-value=4.1e-18 Score=134.01 Aligned_cols=89 Identities=26% Similarity=0.222 Sum_probs=70.5
Q ss_pred ChhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhcccCCChHH--HHHHHHHHHhhcCCcEEEEEecCC
Q psy5610 1 MATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIA--GEIRDLILTNKSKLNVRFIWVPSH 78 (237)
Q Consensus 1 ~~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~~~~~~~~~--~~i~~~~~~l~~~~~v~~~wvp~H 78 (237)
++|++||+.|++.||+. + ...++.|||||+++++++-....+.++. ..+++++..+..+.+|.|.|||||
T Consensus 61 ~Tnn~aEl~Ai~~AL~~-----~---~~~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH 132 (165)
T 3p1g_A 61 TSAQRAELIALTQALKM-----A---EGKKLNVYTDSRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGH 132 (165)
T ss_dssp CCHHHHHHHHHHHHHHH-----T---BTSEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSS
T ss_pred CcHHHHHHHHHHHHHHH-----c---cCceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCC
Confidence 47899999999999999 3 2579999999999999983212222221 234455555556678999999999
Q ss_pred CC-----CcCChHHHHHHHHhhhc
Q psy5610 79 VG-----IAGNEEADRLAKEALTS 97 (237)
Q Consensus 79 ~g-----~~gNe~ad~~a~~a~~~ 97 (237)
+| +.|||.||+||++|+..
T Consensus 133 ~g~~~~~~~gNe~AD~LA~~aa~~ 156 (165)
T 3p1g_A 133 QKGNSAEARGNRMADQAAREAAMK 156 (165)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCcchHHHHHHHHHHHHHhc
Confidence 99 99999999999999987
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.74 E-value=4.5e-18 Score=133.01 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhccc---------CC--ChHH-HHHHHHHHHhhcCCc
Q psy5610 2 ATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIF---------SL--NPIA-GEIRDLILTNKSKLN 69 (237)
Q Consensus 2 ~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~~~---------~~--~~~~-~~i~~~~~~l~~~~~ 69 (237)
+|++||+.|++.||+.+ .. ..+|.|+|||+++++.|.+|. .. .++. ..+...+..+.....
T Consensus 45 tn~~aEl~A~~~AL~~~-----~~--~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~ 117 (158)
T 2e4l_A 45 TNNRMELLAPIVALEAL-----KE--PCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQ 117 (158)
T ss_dssp CHHHHHHHHHHHHHHTC-----SS--CCEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSE
T ss_pred ccHHHHHHHHHHHHHHh-----cc--CCeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHccCc
Confidence 68999999999999994 32 289999999999999998821 11 1211 233333444445568
Q ss_pred EEEEEecCCCCCcCChHHHHHHHHhhhc
Q psy5610 70 VRFIWVPSHVGIAGNEEADRLAKEALTS 97 (237)
Q Consensus 70 v~~~wvp~H~g~~gNe~ad~~a~~a~~~ 97 (237)
|.|.|||||+|++||+.||+||++|+..
T Consensus 118 v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 118 IDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp EEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred EEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.72 E-value=5.4e-18 Score=133.63 Aligned_cols=91 Identities=21% Similarity=0.295 Sum_probs=70.1
Q ss_pred ChhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhc----------ccCCC--hHH-HHHHHHHHHhhcC
Q psy5610 1 MATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQN----------IFSLN--PIA-GEIRDLILTNKSK 67 (237)
Q Consensus 1 ~~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~----------~~~~~--~~~-~~i~~~~~~l~~~ 67 (237)
++|++||+.|++.||+.+ .. ..+|.|+|||+++++.|.+ +...+ ++. ..+...+..+...
T Consensus 46 ~Tnn~aEl~Ai~~AL~~~-----~~--~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~ 118 (166)
T 1ril_A 46 TTNNRMELKAAIEGLKAL-----KE--PCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP 118 (166)
T ss_dssp ECHHHHHHHHHHHHHHSC-----CS--CCEEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHh-----cc--CCeEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhc
Confidence 378999999999999984 32 2589999999999999998 22211 111 2333334444445
Q ss_pred CcEEEEEecCCCCCcCChHHHHHHHHhhhcC
Q psy5610 68 LNVRFIWVPSHVGIAGNEEADRLAKEALTST 98 (237)
Q Consensus 68 ~~v~~~wvp~H~g~~gNe~ad~~a~~a~~~~ 98 (237)
..|.|.|||||+|++||+.||+||++|+...
T Consensus 119 ~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~ 149 (166)
T 1ril_A 119 HRVRFHFVKGHTGHPENERVDREARRQAQSQ 149 (166)
T ss_dssp SEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred CeEEEEEeeCCCCchhHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999883
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.64 E-value=5.3e-16 Score=121.83 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhccc---------C--CChHH--HHHHHHHHHhhcCCc
Q psy5610 3 TSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIF---------S--LNPIA--GEIRDLILTNKSKLN 69 (237)
Q Consensus 3 ~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~~~---------~--~~~~~--~~i~~~~~~l~~~~~ 69 (237)
+..||+.|+..||+.++. ...+|.|+|||++++++|+.|. . +.|+. ..++.+...+....+
T Consensus 56 e~~Aei~Al~~al~~al~------~~~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~ 129 (165)
T 2lsn_A 56 AQMAEIAAVEFACKKALK------IPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPD 129 (165)
T ss_dssp HHHHHHHHHHHHHHHHHH------SSSCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhc------CCCeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCC
Confidence 345555555555555322 3357999999999999997642 1 11221 122233333345668
Q ss_pred EEEEEecCCCCC------cCChHHHHHHHHhhhc
Q psy5610 70 VRFIWVPSHVGI------AGNEEADRLAKEALTS 97 (237)
Q Consensus 70 v~~~wvp~H~g~------~gNe~ad~~a~~a~~~ 97 (237)
|.|.|||||+|. +|||.||+||++|+..
T Consensus 130 v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~~ 163 (165)
T 2lsn_A 130 ITIQHEKGHQPTNTSIHTEGNALADKLATQGSYV 163 (165)
T ss_dssp CEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCccCCCCChHHHHHHHHHHHhhhh
Confidence 999999999995 5899999999999854
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.60 E-value=4.7e-15 Score=113.10 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=70.4
Q ss_pred ChhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhc-ccCCChHHHHHHHHHHHhhc-CCcEEEEEecCC
Q psy5610 1 MATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQN-IFSLNPIAGEIRDLILTNKS-KLNVRFIWVPSH 78 (237)
Q Consensus 1 ~~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~-~~~~~~~~~~i~~~~~~l~~-~~~v~~~wvp~H 78 (237)
++|++||+.|++.||+.+. ..+..++.|+|||+++++.+++ |...++....+.+.+..+.. ...|.|.|||+
T Consensus 44 ~tn~~aEl~A~~~aL~~a~-----~~~~~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~- 117 (141)
T 3hst_B 44 ATNNVAEYRGLIAGLDDAV-----KLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR- 117 (141)
T ss_dssp ECHHHHHHHHHHHHHHHHH-----HHTCSEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG-
T ss_pred CchHHHHHHHHHHHHHHHH-----HCCCceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC-
Confidence 3789999999999999954 3456899999999999999997 44555544444444555544 46799999994
Q ss_pred CCCcCChHHHHHHHHhhhc
Q psy5610 79 VGIAGNEEADRLAKEALTS 97 (237)
Q Consensus 79 ~g~~gNe~ad~~a~~a~~~ 97 (237)
++|+.||+||++|...
T Consensus 118 ---~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 118 ---ARNTYADRLANDAMDA 133 (141)
T ss_dssp ---GGCHHHHHHHHHHHHH
T ss_pred ---cccHHHHHHHHHHHHH
Confidence 8999999999999876
No 11
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.59 E-value=3.3e-15 Score=138.38 Aligned_cols=83 Identities=25% Similarity=0.366 Sum_probs=69.2
Q ss_pred ChhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhcccC--CChHHHHHHHHHHHhhcCCcEEEEEecCC
Q psy5610 1 MATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFS--LNPIAGEIRDLILTNKSKLNVRFIWVPSH 78 (237)
Q Consensus 1 ~~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~~~~--~~~~~~~i~~~~~~l~~~~~v~~~wvp~H 78 (237)
++|++||+.|++.||+. ...++.|+|||+++++.+++|.. ..++.+++.+.+ .....|.|.|||||
T Consensus 471 ~TNn~aEl~A~i~aL~~---------~~~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~~~~---~~~~~v~~~wV~~H 538 (555)
T 1mu2_A 471 TTNQQAELEAFAMALTD---------SGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEM---IKKEAIYVAWVPAH 538 (555)
T ss_dssp CCHHHHHHHHHHHHHHT---------SCSEEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHH---HHCSEEEEEECCSS
T ss_pred CCHHHHHHHHHHHHHHc---------CCCeEEEEEehHHHHHHHhcccccccHHHHHHHHHHh---ccCCcEEEEEEECC
Confidence 47999999999999988 34789999999999999998753 345555544443 34677999999999
Q ss_pred CCCcCChHHHHHHHHhh
Q psy5610 79 VGIAGNEEADRLAKEAL 95 (237)
Q Consensus 79 ~g~~gNe~ad~~a~~a~ 95 (237)
+|++|||.||+||++|+
T Consensus 539 ~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 539 KGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp SCCTTHHHHHHHHHTTC
T ss_pred CCChhHHHHHHHHHhhC
Confidence 99999999999999874
No 12
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.58 E-value=2.4e-15 Score=139.34 Aligned_cols=82 Identities=30% Similarity=0.393 Sum_probs=66.5
Q ss_pred ChhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhcccCC--ChHHHHHHHHHHHhhcCCcEEEEEecCC
Q psy5610 1 MATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSL--NPIAGEIRDLILTNKSKLNVRFIWVPSH 78 (237)
Q Consensus 1 ~~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~~~~~--~~~~~~i~~~~~~l~~~~~v~~~wvp~H 78 (237)
++|++||+.|++.||+. + ..++.|+|||++|++.++++... .++.+++.+. +....+|.|.|||||
T Consensus 474 ~TNn~aEl~Ai~~aL~~-----~----~~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~~---l~~~~~v~~~wV~~H 541 (557)
T 2zd1_A 474 TTNQKTELQAIYLALQD-----S----GLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQ---LIKKEKVYLAWVPAH 541 (557)
T ss_dssp CCHHHHHHHHHHHHHHH-----S----CSEEEEEECCHHHHHHHTTCCSEESSHHHHHHHHH---HHHCSEEEEEECCSS
T ss_pred CCHHHHHHHHHHHHHHh-----C----CCcEEEEeChHHHHHHHhcCCccCCHHHHHHHHHH---HhcCCCEEEEEcCCC
Confidence 47999999999999999 3 47899999999999999987653 4555554433 334568999999999
Q ss_pred CCCcCChHHHHHHHHh
Q psy5610 79 VGIAGNEEADRLAKEA 94 (237)
Q Consensus 79 ~g~~gNe~ad~~a~~a 94 (237)
+|++|||.||+||++|
T Consensus 542 ~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 542 KGIGGNEQVDKLVSAG 557 (557)
T ss_dssp SCCTTCCGGGGCC---
T ss_pred CCChhHHHHHHHHhcC
Confidence 9999999999999876
No 13
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.57 E-value=3.7e-15 Score=115.05 Aligned_cols=88 Identities=23% Similarity=0.338 Sum_probs=66.6
Q ss_pred ChhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhccc-CCChHHHHHHHHHHHhhcCCcEEEEEecCCC
Q psy5610 1 MATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIF-SLNPIAGEIRDLILTNKSKLNVRFIWVPSHV 79 (237)
Q Consensus 1 ~~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~~~-~~~~~~~~i~~~~~~l~~~~~v~~~wvp~H~ 79 (237)
++|++||+.|++.||+.+. ..+..++.|+|||+++++.++++. ..++....+.+.+..+....+|.|.|||+
T Consensus 46 ~tnn~aEl~A~~~aL~~a~-----~~g~~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~~v~~~~V~~-- 118 (149)
T 2ehg_A 46 STNNVAEYSGLICLMETML-----RLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPR-- 118 (149)
T ss_dssp CCHHHHHHHHHHHHHHHHH-----HHTCCSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHHTCEEEECCG--
T ss_pred ccHHHHHHHHHHHHHHHHH-----HcCCCEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcCCEEEEEcCC--
Confidence 4789999999999999964 345679999999999999999853 33332333333333332223699999998
Q ss_pred CCcCChHHHHHHHHhhhc
Q psy5610 80 GIAGNEEADRLAKEALTS 97 (237)
Q Consensus 80 g~~gNe~ad~~a~~a~~~ 97 (237)
++|+.||+||++|+..
T Consensus 119 --~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 119 --EENKEADRLSRVAYEL 134 (149)
T ss_dssp --GGCHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHh
Confidence 5999999999999877
No 14
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.56 E-value=1.1e-14 Score=110.65 Aligned_cols=87 Identities=22% Similarity=0.247 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHHHHHhHHhhhhcCCCc----eEEEEeccHHHHHHHhccc-CCChHHHHHHHHHHHh--hcCCcEEEEE
Q psy5610 2 ATSVLELTAILFAIHFSISAHLNNVNRA----YLVICSDSLSALQTLQNIF-SLNPIAGEIRDLILTN--KSKLNVRFIW 74 (237)
Q Consensus 2 ~~~~AEl~ai~~al~~~~~~~~~~~~~~----~~~I~tDs~~~i~~l~~~~-~~~~~~~~i~~~~~~l--~~~~~v~~~w 74 (237)
+|++||+.|++.||+.+.. .+.+ ++.|+|||+++++.++++. ..++-...+.+.+..+ .....|.|.|
T Consensus 44 tn~~aEl~A~~~aL~~a~~-----~~~~~~~~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~ 118 (140)
T 3u3g_D 44 TNNVAEYEALIRALEDLQM-----FGDKLVDMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVH 118 (140)
T ss_dssp CHHHHHHHHHHHHHHHHGG-----GGGGGTTCEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEE
T ss_pred chHHHHHHHHHHHHHHHHH-----cCCCCCCceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 7899999999999999643 3445 9999999999999999854 3443233333333333 3345899999
Q ss_pred ecCCCCCcCChHHHHHHHHhhhc
Q psy5610 75 VPSHVGIAGNEEADRLAKEALTS 97 (237)
Q Consensus 75 vp~H~g~~gNe~ad~~a~~a~~~ 97 (237)
|| .++|+.||+||++|...
T Consensus 119 V~----~~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 119 IP----REKNARADELVNEAIDK 137 (140)
T ss_dssp CC----GGGGHHHHHHHHHHHHH
T ss_pred cC----chhhHHHHHHHHHHHHh
Confidence 99 48999999999999764
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=98.65 E-value=6.8e-09 Score=79.19 Aligned_cols=82 Identities=15% Similarity=0.023 Sum_probs=56.8
Q ss_pred ChhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhcccCC----C-----hHHHHHHHHHHHhhcCCcEE
Q psy5610 1 MATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSL----N-----PIAGEIRDLILTNKSKLNVR 71 (237)
Q Consensus 1 ~~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~~~~~----~-----~~~~~i~~~~~~l~~~~~v~ 71 (237)
++|++||+.|++.||+.+.+ .+. ++.|+|||+++++.+++.... . ++.+.+.++..-+. ...++
T Consensus 49 ~TNN~aEl~A~i~aL~~~~~-----~~~-~v~i~tDS~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~-~~~~~ 121 (142)
T 1zbf_A 49 GTNNMGEFLAIVHGLRYLKE-----RNS-RKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLN-THTYE 121 (142)
T ss_dssp ECHHHHHHHHHHHHHHHHHH-----TTC-CCCEEESCHHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHH-HCCCC
T ss_pred cCcHHHHHHHHHHHHHHHHh-----CCC-eEEEEEehHHHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHh-hCCCc
Confidence 37999999999999999643 344 899999999999999975421 1 23333333322222 23455
Q ss_pred EEEecCCCCCcCChHHHH
Q psy5610 72 FIWVPSHVGIAGNEEADR 89 (237)
Q Consensus 72 ~~wvp~H~g~~gNe~ad~ 89 (237)
...|..|++.-||..||.
T Consensus 122 ~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 122 TPILKWQTDKWGEIKADY 139 (142)
T ss_dssp CCEEECCHHHHCSCTTCC
T ss_pred eeEEEeccCccCcCcccc
Confidence 666777888889999883
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.14 E-value=4.5e-06 Score=62.61 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=34.2
Q ss_pred ChhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhcc
Q psy5610 1 MATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNI 47 (237)
Q Consensus 1 ~~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~~ 47 (237)
++|++||++|++.||+.+.+ .+. ++.|+|||+++++.|.++
T Consensus 43 tTNN~aEl~A~i~aL~~l~~-----~~~-~v~i~tDSqyVi~wi~~~ 83 (134)
T 4htu_A 43 GTNNMGEFLAIVHGLRYLKE-----RNS-RKPIYSNSQTAIKWVKDK 83 (134)
T ss_dssp ECHHHHHHHHHHHHHHHHHH-----TTC-CCCEEESCHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHh-----CCC-CEEEEcchHHHHHHHHcC
Confidence 37999999999999999643 222 389999999999999874
No 17
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=71.17 E-value=2.3 Score=29.65 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=23.8
Q ss_pred CCCCCCCcccccccccccccccHHhhhc
Q psy5610 180 PICVPCGCVISVKHILTDCQTHSNIRAP 207 (237)
Q Consensus 180 p~C~~Cg~~et~~H~l~~Cp~~~~~R~~ 207 (237)
-.|+.||+..+-.|.+-.||........
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~s 99 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYCS 99 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGCC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccCc
Confidence 5799999999999999999998765443
No 18
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=48.77 E-value=12 Score=32.89 Aligned_cols=40 Identities=13% Similarity=-0.027 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHhHHhhhhcCCCceEEEEeccHHHHHHHhc
Q psy5610 2 ATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQN 46 (237)
Q Consensus 2 ~~~~AEl~ai~~al~~~~~~~~~~~~~~~~~I~tDs~~~i~~l~~ 46 (237)
+.+..|+.||..|++....+ ..+..+.|+||+. ++.-+.+
T Consensus 388 s~~ekEllAi~~a~~~~~~y----l~g~~~~v~tDh~-~~~~l~~ 427 (455)
T 1rw3_A 388 PPCLRMVAAIAVLTKDAGKL----TMGQPLVIKAPHA-VEALVKQ 427 (455)
T ss_dssp CCSSHHHHHHHHHHHHHHGG----GCSSCEEEECSSC-TTTTSSS
T ss_pred chHHHHHHHHHHHHHHHHHH----cCCCcEEEEecCh-HHHHhCC
Confidence 56789999999999996432 2446899999996 5555554
No 19
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=48.77 E-value=14 Score=24.63 Aligned_cols=45 Identities=22% Similarity=0.215 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEecCCCCCcCChHHHHHHHHhhhc
Q psy5610 53 IAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEALTS 97 (237)
Q Consensus 53 ~~~~i~~~~~~l~~~~~v~~~wvp~H~g~~gNe~ad~~a~~a~~~ 97 (237)
..+.|++++..+..+++--+.+|-|-+-...||.-.++-|++..-
T Consensus 36 ssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsy 80 (112)
T 2lnd_A 36 SSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSY 80 (112)
T ss_dssp SHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEE
T ss_pred chhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcch
Confidence 468999999999988875567788887777788777777776654
No 20
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=33.49 E-value=7.6 Score=26.56 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=21.3
Q ss_pred hhhhhhhcccccccccccccCCCCCCCCCCCCcccccc
Q psy5610 155 QVSLTRLRIGHTNTTHIHLMKKENPPICVPCGCVISVK 192 (237)
Q Consensus 155 ~~~l~qlrtGH~~~~~~~r~~~~~~p~C~~Cg~~et~~ 192 (237)
..-|.|++-|-|-|.| ..|+.||...++.
T Consensus 37 aadlvrmlrglgvfmh---------akcprcgaegsvs 65 (131)
T 2x5c_A 37 AADLVRMLRGLGVFMH---------AKCPRCGAEGSVS 65 (131)
T ss_dssp HHHHHHHHHHHTCCCE---------EECTTTSCEEEEE
T ss_pred HHHHHHHHhcchheee---------ccCCCCCCccceE
Confidence 4457888888777765 5688999866554
No 21
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=30.11 E-value=24 Score=25.64 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=16.0
Q ss_pred CCCCCCCCCcccccc-cccccccccH
Q psy5610 178 NPPICVPCGCVISVK-HILTDCQTHS 202 (237)
Q Consensus 178 ~~p~C~~Cg~~et~~-H~l~~Cp~~~ 202 (237)
.-|.||.|+.+.|-+ -.++.||-..
T Consensus 26 ~lP~CP~C~seytYeDg~l~vCPeC~ 51 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGALLVCPECA 51 (138)
T ss_dssp CSCCCTTTCCCCCEECSSSEEETTTT
T ss_pred cCCCCCCCCCcceEecCCeEECCccc
Confidence 359999999753222 2356799654
No 22
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=27.82 E-value=20 Score=19.78 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=8.4
Q ss_pred CCCCCCccccc
Q psy5610 181 ICVPCGCVISV 191 (237)
Q Consensus 181 ~C~~Cg~~et~ 191 (237)
.|+.||.+||.
T Consensus 2 lC~~C~~peT~ 12 (36)
T 1k81_A 2 ICRECGKPDTK 12 (36)
T ss_dssp CCSSSCSCEEE
T ss_pred CCcCCCCCCcE
Confidence 58899987654
No 23
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.52 E-value=21 Score=24.82 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=9.5
Q ss_pred CCCCCCCCccccc
Q psy5610 179 PPICVPCGCVISV 191 (237)
Q Consensus 179 ~p~C~~Cg~~et~ 191 (237)
...||.||.+.+.
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4569999986554
No 24
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=21.23 E-value=30 Score=24.19 Aligned_cols=18 Identities=28% Similarity=0.792 Sum_probs=13.5
Q ss_pred CCCCCCCCCcc-----ccccccc
Q psy5610 178 NPPICVPCGCV-----ISVKHIL 195 (237)
Q Consensus 178 ~~p~C~~Cg~~-----et~~H~l 195 (237)
+...|.+||.. .+++|++
T Consensus 34 ~~~~C~yCg~~~~~~~~~vDHIi 56 (112)
T 2qgp_A 34 ARGICHYCGEIFPPEELTMDHLV 56 (112)
T ss_dssp HHTBCTTTCCBCCGGGEEEEESS
T ss_pred cCCcCCCCCCcCCCCCcEEEEEe
Confidence 34689999963 3789987
Done!