RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5610
(237 letters)
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 59.7 bits (145), Expect = 1e-11
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 1 MATSVLELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLN-PIAGEIRD 59
M E+ A L+A+ + + + I D +
Sbjct: 48 MRNVAGEIAAALYAVKKASQLGVK------IRILHDYAGIAFWATGEWKAKNEFTQAYAK 101
Query: 60 LILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 95
L+ N+ + F V +H G N+ D AK AL
Sbjct: 102 LM--NQYRGIYSFEKVKAHSGNEFNDYVDMKAKSAL 135
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 54.1 bits (130), Expect = 2e-09
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 7 ELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGEIRDLILTNKS 66
EL A+ A+ + LN + S A + + EI L+
Sbjct: 67 ELIALTQALKMAEGKKLN------VYTDSRYAFATAHVHSEGREIKNKNEILALLKALFL 120
Query: 67 KLNVRFIWVPSHVG-----IAGNEEADRLAKEAL 95
+ I P H GN AD+ A+EA
Sbjct: 121 PKRLSIIHCPGHQKGNSAEARGNRMADQAAREAA 154
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 47.6 bits (114), Expect = 3e-07
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 66 SKLNVRFIWVPSHVGIAGNEEADRLAKEA 94
++++++ VP H G GNEEADRLA+E
Sbjct: 120 QGMDIQWMHVPGHSGFIGNEEADRLAREG 148
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 46.0 bits (110), Expect = 9e-07
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 66 SKLNVRFIWVPSHVGIAGNEEADRLAKEA 94
K V WVP+H GI GNE+ D+L
Sbjct: 116 KKEKVYLAWVPAHKGIGGNEQVDKLVSAG 144
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 46.3 bits (110), Expect = 3e-06
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 7 ELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQN--IFSLNPIAGEIRDLILTN 64
EL AI A+ S VN I +DS AL +Q S + + +I + ++
Sbjct: 480 ELQAIYLALQDSGL----EVN-----IVTDSQYALGIIQAQPDKSESELVNQIIEQLI-- 528
Query: 65 KSKLNVRFIWVPSHVGIAGNEEADRL 90
K V WVP+H GI GNE+ D+L
Sbjct: 529 -KKEKVYLAWVPAHKGIGGNEQVDKL 553
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 42.9 bits (102), Expect = 1e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 66 SKLNVRFIWVPSHVGIAGNEEADRLAKEA 94
+ +++ WV H G NE AD LA+ A
Sbjct: 112 GQHQIKWEWVKGHAGHPENERADELARAA 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 2e-05
Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 67/234 (28%)
Query: 34 CSDSLSALQTLQNIFSLNPIAGEIRDLILTNKSKLNVRFI-WVPSHVGIAGNEEADRLAK 92
C D ++I S EI +I++ + + W + E + +
Sbjct: 35 CKD---VQDMPKSILS----KEEIDHIIMSKDAVSGTLRLFWT---LLSKQEEMVQKFVE 84
Query: 93 EALTSTHPTINKIPIPDYKAYSKRKILSAWNSEWHNLQNNKLHQIKLENKPWN-----PP 147
E L +YK ++S +E I+ ++ +N
Sbjct: 85 EVLR-----------INYKF-----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 148 YLINRKEQV-----SLTRLRIGHTNTTHIHLMK------------KENPPICVPCGCV-- 188
Y ++R + +L LR N I + C +
Sbjct: 129 YNVSRLQPYLKLRQALLELR-PAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 189 ISVKHILTDCQTHSNIRAPL-NLSSTL---LSCLKDNDISPILEF------LRR 232
+++K+ C + + L L + + D+ + L LRR
Sbjct: 187 LNLKN----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Score = 35.2 bits (80), Expect = 0.019
Identities = 51/274 (18%), Positives = 84/274 (30%), Gaps = 100/274 (36%)
Query: 30 YLVICSDSLSALQTLQNIFSLNPIAGEIRDLILT-------NKSKLN------------- 69
YL L N L+ IA IRD + T N KL
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 70 -VR--------F---IWVPSHV------GIAGNEE---ADRLAKEALTSTHPTINKIPIP 108
R F +P+ + + ++ ++L K +L P + I IP
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 109 DYKAYSKRKILSAWNSEWHNLQNNKLHQIKLENKPWNPPYLINRK---EQVSLTRLR--- 162
Y + K+ LH+ +++ Y I + + + L
Sbjct: 430 SI--YLELKV--------KLENEYALHRSIVDH------YNIPKTFDSDDLIPPYLDQYF 473
Query: 163 ---IGHTNTTHIHLMKKENPPICVPCGCVISVKHILTD--------CQTHSNIRAPLNLS 211
IGH HL E+P + + + D + A ++
Sbjct: 474 YSHIGH------HLKNIEHP------ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 212 STLLSCLK-------DND------ISPILEFLRR 232
+TL LK DND ++ IL+FL +
Sbjct: 522 NTLQQ-LKFYKPYICDNDPKYERLVNAILDFLPK 554
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 42.2 bits (100), Expect = 2e-05
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 66 SKLNVRFIWVPSHVGIAGNEEADRLAKEALTSTHPTINKIPIPDYKA 112
+ VRF +V H G NE DR A+ S K P P
Sbjct: 117 APHRVRFHFVKGHTGHPENERVDREARRQAQS----QAKTPCPPRAP 159
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 42.1 bits (100), Expect = 2e-05
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 66 SKLNVRFIWVPSHVGIAGNEEADRLAKEA 94
+ V F V H N AD LA+ A
Sbjct: 113 TLHRVTFHKVKGHSDNPYNSRADELARLA 141
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 41.7 bits (99), Expect = 4e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 66 SKLNVRFIWVPSHVGIAGNEEADRLAKEA 94
+ + WV H G A NE D+LA+ A
Sbjct: 114 QLHQIDWRWVKGHAGHAENERCDQLARAA 142
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 42.8 bits (101), Expect = 5e-05
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 7 ELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQN--IFSLNPIAGEIRDLILTN 64
EL A A+ S VN I DS + + + S + I +I + ++
Sbjct: 477 ELEAFAMALTDSGP----KVN-----IIVDSQYVMGIVASQPTESESKIVNQIIEEMI-- 525
Query: 65 KSKLNVRFIWVPSHVGIAGNEEADRL 90
K + WVP+H GI GN+E D L
Sbjct: 526 -KKEAIYVAWVPAHKGIGGNQEVDHL 550
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded
RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus
tokodaii} PDB: 3aly_A
Length = 149
Score = 40.0 bits (94), Expect = 1e-04
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 31 LVICSDSLSALQTLQNIF-----SLNPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNE 85
+I DS ++ + + + P+ + +L KLN IWVP N+
Sbjct: 71 PIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELK----KKLNATLIWVPR----EENK 122
Query: 86 EADRLAKEAL 95
EADRL++ A
Sbjct: 123 EADRLSRVAY 132
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 38.0 bits (89), Expect = 6e-04
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 17/94 (18%)
Query: 7 ELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIF-----SLNPIAGEIRDLI 61
E ++ + ++ + DS ++ + + L + + + L
Sbjct: 50 EYRGLIAGLDDAVKLGATEAA-----VLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALA 104
Query: 62 LTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 95
+ + WVP N ADRLA +A+
Sbjct: 105 ---SQFRRINYEWVPRA----RNTYADRLANDAM 131
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of
RNA/DNA hybrid; 1.40A {Uncultured organism}
Length = 140
Score = 37.5 bits (88), Expect = 7e-04
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 50 LNPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 95
L +I + K+ V H+ N AD L EA+
Sbjct: 96 LKEKFAKIAHI------KMERVPNLVFVHIPREKNARADELVNEAI 135
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.4 bits (73), Expect = 0.070
Identities = 7/76 (9%), Positives = 27/76 (35%), Gaps = 20/76 (26%)
Query: 81 IAGNEEADRLAKEALTSTHPTINKIPIPDYKAYSKRKILSAWNSEWHNLQNNKLHQIKLE 140
+ + A ++ ++ + +K+ + EW+ Q+ ++ + K+
Sbjct: 98 LQELDAASKVMEQEW---------------REKAKKDL-----EEWNQRQSEQVEKNKIN 137
Query: 141 NKPWNPPYLINRKEQV 156
N+ + + +
Sbjct: 138 NRIADKAFYQQPDADI 153
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.14
Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 77/204 (37%)
Query: 5 VLELTAI----LFAIHFSISAHLNNVNRAYLVICSD------SL---SALQTLQNIFSLN 51
+L T L + + L ++ +I +D SL +AL +L ++ S+
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDL----KSKGLIPADATFAGHSLGEYAALASLADVMSI- 1779
Query: 52 PIAGE-------IRDLILTN------KSKLNVRFIWV-PSHVGIAGNEEADRLAKEALTS 97
E R + + + N I + P V + ++EA + E +
Sbjct: 1780 ----ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV-- 1833
Query: 98 THPTINKIPIPDYKAYSKRKILSAWNSEWHNLQN----------------NKLHQIKLEN 141
++ N +N++N N L+ IKL+
Sbjct: 1834 --------------GKRTGWLVEIVN---YNVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876
Query: 142 KPWNPPYLINRKEQVSLTRLRIGH 165
+I ++ +SL + GH
Sbjct: 1877 ID-----IIELQKSLSLEEVE-GH 1894
Score = 28.9 bits (64), Expect = 2.0
Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 31/141 (21%)
Query: 17 FSISAHLNNVNRAYLVICSDSLSALQTLQNIF--SL-NPIAGEIRDLILTNKSKLNVRFI 73
++S H ++ LV + S LQ F L P G D T ++L +F+
Sbjct: 9 LTLS-H-GSLEHVLLV-PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 74 WVPSHVGIAGNEEADRLAKEALTSTHPTINKIPIPDYKAYSKRKILSAWNSEWHNLQNNK 133
+V + + + + L+ + + + L+ N
Sbjct: 66 ---GYV-------SSLVEPSKVGQFDQVL-------------NLCLTEFENCY--LEGND 100
Query: 134 LHQIKLENKPWNPPYLINRKE 154
+H + + N L+ KE
Sbjct: 101 IHALAAKLLQENDTTLVKTKE 121
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: d.15.1.1
Length = 116
Score = 29.6 bits (66), Expect = 0.30
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 14/70 (20%)
Query: 115 KRKILSAWNSEWHNLQNNKLHQIKLENKPWNPPYLINR----KEQVSLTRLRIGHTNTTH 170
+ + W +W Q + + ++ LI + V+L L++ TT
Sbjct: 43 AKHVYDNWPMDWEEEQVSSPNILR----------LIYQGRFLHGNVTLGALKLPFGKTTV 92
Query: 171 IHLMKKENPP 180
+HL+ +E P
Sbjct: 93 MHLVARETLP 102
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 0.94
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 181 ICVPCGCVISVKHI 194
+C CG V+S K +
Sbjct: 44 VCALCGLVLSDKLV 57
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural
genomics, protein structure initiative, PSI; NMR {Homo
sapiens}
Length = 125
Score = 27.3 bits (60), Expect = 2.5
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 26/91 (28%)
Query: 115 KRKILSAWNSEWHNLQNNKLHQIKLENKPWNPPYLINR----KEQVSLTRLRIGHTNTTH 170
+ + W +W Q + + ++ LI + V+L L++ TT
Sbjct: 44 AKHVYDNWPMDWEEEQVSSPNILR----------LIYQGRFLHGNVTLGALKLPFGKTTV 93
Query: 171 IHLM------------KKENPPICVPCGCVI 189
+HL+ ++ CVI
Sbjct: 94 MHLVARETLPEPNSQGQRNREKTGESNCCVI 124
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP:
b.42.6.1
Length = 187
Score = 27.6 bits (61), Expect = 2.6
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 175 KKENPPICVPCGCVISVKHILTDCQTHS-NIRAPLNLSSTLLSCLKDNDIS 224
K N + CG I +KH+ T HS + APL+ +S S
Sbjct: 61 AKCNRGDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAES 111
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics,
northeast structural genomics consortium (NESG), target
SGR46, PSI-2; NMR {Synechocystis SP}
Length = 116
Score = 26.5 bits (58), Expect = 4.5
Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 31/96 (32%)
Query: 63 TNKSKLNVRFIWVPSHVGIAGNEEADRLAKEALTSTHPTINKIPIPDYKAYSKRKILSAW 122
T + ++ +W+ +V IA ++ + P+ Y + + AW
Sbjct: 5 TVHTSFILKVLWLDQNVAIAVDQIVGK-------------GTSPLTSYFFWPRA---DAW 48
Query: 123 NSEWHNLQNNKLHQIKLENKPWNPPYLINRKEQVSL 158
+ +LE K W I +++++
Sbjct: 49 Q----------QLKDELEAKHW-----IAEADRINV 69
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching,
transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Length = 540
Score = 27.2 bits (59), Expect = 6.5
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 22 HLNNVNRAYLVICSDSLSALQTLQNIF 48
H + L AL+ N F
Sbjct: 501 HARAFFHLLKGASPEELRALEERDNPF 527
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato
yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB:
1l5i_A
Length = 118
Score = 25.8 bits (56), Expect = 6.6
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 8/90 (8%)
Query: 134 LHQIKLENKPWNPPYLINRKEQVSLTRLRIGHTNTTHIHLMKKENPPICVPCGCVISVKH 193
L QI P N ++ +E H+H++ + +
Sbjct: 26 LSQITNLQTPTNKLFIKICREL--------HENGEPHLHILIQFEGKYNCTNQRFFDLVS 77
Query: 194 ILTDCQTHSNIRAPLNLSSTLLSCLKDNDI 223
H NI+ + S KD D+
Sbjct: 78 PTRSAHFHPNIQGAKSSSDVKSYIDKDGDV 107
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 25.5 bits (57), Expect = 7.5
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 42 QTLQNIFSLNPIAGEIR 58
+ +F+LN G I
Sbjct: 59 PATKRLFALNNTTGLIT 75
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL
signalling, SI protein; HET: NAG; 2.19A {Mus musculus}
PDB: 3okt_A*
Length = 681
Score = 26.6 bits (57), Expect = 8.8
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 176 KENPPICVPCGCVISVKHILTDCQTHSNIRAPLNLSSTLLSC 217
+E+ C P V +LT + + + LL+C
Sbjct: 57 EEDNKACYPPLIVQPCSEVLTLTNNVNKLLIIDYSENRLLAC 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.403
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,418,447
Number of extensions: 187238
Number of successful extensions: 495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 33
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)