BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5613
(1010 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIG|A Chain A, The Solution Structure Of The Dpy Module From The Dumpy
Protein
Length = 24
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 67 RPECVLNSDCPSNKACIRNKCKNP 90
RPECVLNSDCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 22/24 (91%)
Query: 666 RPECVQNTECPYDKACINEKCRDP 689
RPECV N++CP ++AC+N+KCRDP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 874 RPECTVNTDCPLDKACVNQKCVDP 897
RPEC +N+DCP ++ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 556 RPECTVNSDCPLDKACFNQKCVDP 579
RPEC +NSDCP ++AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 172 RPECTVNSDCPLDRACQNQKCVDP 195
RPEC +NSDCP ++AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 451 RPECVQNSDCPRNKACIRNKCKNP 474
RPECV NSDCP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 281 RPECLINSDCPLSLACIKNHCRDP 304
RPEC++NSDCP + AC+ CRDP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 769 RPECVRNSDCANNKACIRNKCKNP 792
RPECV NSDC +N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>pdb|2B7J|A Chain A, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|B Chain B, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|C Chain C, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|D Chain D, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7K|A Chain A, Crystal Structure Of Yeast Sco1
pdb|2B7K|B Chain B, Crystal Structure Of Yeast Sco1
pdb|2B7K|C Chain C, Crystal Structure Of Yeast Sco1
pdb|2B7K|D Chain D, Crystal Structure Of Yeast Sco1
Length = 200
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 500 GTTGSP-FIQCKPVQNEPV----YTNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPN 554
G T P FI C P ++ P Y + PS G EV + C YF +PPN
Sbjct: 76 GITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEV--KNACKKYRVYFSTPPN 133
Query: 555 CRP 557
+P
Sbjct: 134 VKP 136
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 69/196 (35%), Gaps = 38/196 (19%)
Query: 690 CPGSCGQGAQCRVINHSPVCYCPDGFIGD--AFSSCYPKPIEPIQAPEQQADPCICAPNA 747
CPG C G C N +C CPDGF G + C P+ C
Sbjct: 151 CPGGCRNGGFC---NERRICECPDGFHGPHCEKALCTPR----------------CMNGG 191
Query: 748 VCRD-NVCVCLPDYYGDG--YTVCRPECVRNSDCANNKACIRNKCKNPCVPGTCGEGAIC 804
+C C+C P +YG C C C CI C PG EG C
Sbjct: 192 LCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCI-------CPPGL--EGEQC 242
Query: 805 DVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNP-CQPSPCGPNSQCREVNKQAVCSCL 863
++ C G +C Q + + P C+P CG + C E NK C C
Sbjct: 243 EISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPG-CGAHGTCHEPNK---CQCQ 298
Query: 864 PNYFGSPPNCRPECTV 879
+ G N R E ++
Sbjct: 299 EGWHGRHCNKRYEASL 314
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 91 CVPGTCGEGAIC--DVVNHAVMCTCPPGTTG---SPFIQCKPIQNEPVYTNPCQPSPCGP 145
C P C G IC + + + C CP G T S ++ + EP PC P+PC
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 146 NSQCR 150
C
Sbjct: 63 GGTCE 67
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 793 CVPGTCGEGAIC--DVINHSVVCSCPPGTTG---SPFIQCKPVIQEPVYTNPCQPSPCGP 847
C P C G IC + + S C CP G T S ++ +EP PC P+PC
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 848 NSQCR 852
C
Sbjct: 63 GGTCE 67
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 475 CVPGTCGEGAIC--DVINHAVMCTCPPGTTG---SPFIQCKPVQNEPVYTNPCQPSPCGP 529
C P C G IC + + + C CP G T S ++ + EP PC P+PC
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 530 NSQCR 534
C
Sbjct: 63 GGTCE 67
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 19/89 (21%)
Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 688
VN C+ +PC + C D G C C+P Y G +C V EC N +C D
Sbjct: 45 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGV--HCE---VNTDECASSPCLHNGRCLD 99
Query: 689 PCPGSCGQGAQCRVINHSPVCYCPDGFIG 717
IN C CP GF G
Sbjct: 100 K-------------INEFQ-CECPTGFTG 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.498
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,112,194
Number of Sequences: 62578
Number of extensions: 1603907
Number of successful extensions: 3512
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 2913
Number of HSP's gapped (non-prelim): 603
length of query: 1010
length of database: 14,973,337
effective HSP length: 108
effective length of query: 902
effective length of database: 8,214,913
effective search space: 7409851526
effective search space used: 7409851526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)