RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5613
(1010 letters)
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 54.3 bits (130), Expect = 2e-07
Identities = 48/323 (14%), Positives = 66/323 (20%), Gaps = 45/323 (13%)
Query: 518 YTNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPL---DKACFNQ 574
Y + C N + + + + L D
Sbjct: 360 YDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQV 419
Query: 575 KCVDPCPGTCGQNANCRVINHNP----SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVN 630
C C C G+ G C
Sbjct: 420 LPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGK---NCE--------------CQ 462
Query: 631 PCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPC 690
S CR N S CS L + + C + Y + C +
Sbjct: 463 TQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSD-VPGKLIYGQYCECDTINCER 521
Query: 691 PGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVCR 750
G R + C C GF G A E C+ CR
Sbjct: 522 YNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ------CERTTEGCLNPRRVECSGRGRCR 575
Query: 751 DNVCVCLPDYYGDG---YTVCRPECVRNSDCANNKACIRN--------KCKNPCVPGTCG 799
NVC C Y C C + CA + C +
Sbjct: 576 CNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPV 635
Query: 800 EGAICDVINHSVVCSCPPGTTGS 822
+G C + C T
Sbjct: 636 KGRTCKERD---SEGCWVAYTLE 655
Score = 47.4 bits (112), Expect = 2e-05
Identities = 45/299 (15%), Positives = 74/299 (24%), Gaps = 57/299 (19%)
Query: 35 QQDTCNCVPNAVCKDEVCVCLPDFYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPC-VP 93
+D C + +C C + G +C + S +C ++ C
Sbjct: 431 SRDRSLCHGKGFLECGICRCDTGYIGK---NCECQTQGRSSQELEGSCRKDNNSIICSGL 487
Query: 94 GTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQCREIN 153
G C G C C I + + + + CG +
Sbjct: 488 GDCVCG----------QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC 537
Query: 154 HQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARCQVYNHNP 213
+ C C P + GS ACQ ++ + C +
Sbjct: 538 GK--CRCHPGFEGS------------------ACQCERTTEGCLNPRRVECSGRGRCRCN 577
Query: 214 VCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARCRVQNEHALCECLPDYY 273
VC C GY +C P PSPCG C + +
Sbjct: 578 VCECHSGYQLPLCQEC---------------PGCPSPCGKYISCA-----ECLKFEKGPF 617
Query: 274 GNPYEGCRPECLINSDCPLSLACIKNHCRDPCPGTCGV---QAICSVSNHIPICYCPAG 329
G P ++++ C + + C AG
Sbjct: 618 GKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAG 676
Score = 45.5 bits (107), Expect = 8e-05
Identities = 48/304 (15%), Positives = 71/304 (23%), Gaps = 66/304 (21%)
Query: 419 QEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPC-VP 477
D C G+C C Y G +C + S +C ++ C
Sbjct: 431 SRDRSLCHGKGFLECGICRCDTGYIGK---NCECQTQGRSSQELEGSCRKDNNSIICSGL 487
Query: 478 GTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREVH 537
G C G C C I + + + + CG +
Sbjct: 488 GDCVCG----------QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC 537
Query: 538 KQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCPGTCGQNANCRVINHNP 597
+ C C P + GS AC ++ + C + R
Sbjct: 538 GK--CRCHPGFEGS------------------ACQCERTTEGCLNPRRVECSGRGRCRCN 577
Query: 598 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPN 657
C C +G+ C P PSPCG Y C +
Sbjct: 578 VCECHSGYQLP---LCQE--------------CPGCPSPCGKYISCAE-----CLKFEKG 615
Query: 658 YIG-------APPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCY 710
G V+ C + C G +I
Sbjct: 616 PFGKNCSAACPGLQLSNNPVKGRTCKERDSE---GCWVAYTLEQQDGMDRYLIYVDESRE 672
Query: 711 CPDG 714
C G
Sbjct: 673 CVAG 676
Score = 44.7 bits (105), Expect = 2e-04
Identities = 38/247 (15%), Positives = 61/247 (24%), Gaps = 37/247 (14%)
Query: 681 CINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADP 740
C + P A + S GF + P + +Q D
Sbjct: 378 CDGVQINVPITFQVKVTATECIQEQS-FVIRALGFTD--IVTVQVLPQCECRCRDQSRDR 434
Query: 741 CICAPNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPC-VPGTCG 799
+C +C C Y G C + S +C ++ C G C
Sbjct: 435 SLCHGKGFLECGICRCDTGYIGK---NCECQTQGRSSQELEGSCRKDNNSIICSGLGDCV 491
Query: 800 EGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCREVNKQAV 859
G C C I + + + CG + +
Sbjct: 492 CG----------QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGK-- 539
Query: 860 CSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPICTC 919
C C P + GS AC ++ + C + R +C C
Sbjct: 540 CRCHPGFEGS------------------ACQCERTTEGCLNPRRVECSGRGRCRCNVCEC 581
Query: 920 RPGFTGE 926
G+
Sbjct: 582 HSGYQLP 588
Score = 38.5 bits (89), Expect = 0.010
Identities = 39/287 (13%), Positives = 62/287 (21%), Gaps = 42/287 (14%)
Query: 74 SDCPSNKACIRNKCKNPCVPGTCGEGAICDVVNH---AVMCTCPPGTTGSPFIQCKPIQN 130
S+ +++ R C + G T +Q P
Sbjct: 365 SNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCE 424
Query: 131 EPVYTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQ 190
S C +C C Y G C+ + + + N
Sbjct: 425 CRCRDQSRDRSLCHGKGFLE----CGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNN 480
Query: 191 KCVDPCPGSCGYRARCQVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSP 250
+ G C C C T +
Sbjct: 481 SIICSGLGDC----------VCGQCLCHTSDVPGKLIYGQYCECDTIN----CERYNGQV 526
Query: 251 CGSNARCRVQNEHALCECLPDYYGNPYEGCRPECLINSDCPLSLACIKNHCRDPCPGTCG 310
CG R C C P + G S C C +P C
Sbjct: 527 CGGPGRGLCFCGK--CRCHPGFEG-------------SAC--QCERTTEGCLNPRRVECS 569
Query: 311 VQAICSVSNHIPICYCPAGFTGDAFRQCSPIPQREPEYRDPCSTTQC 357
+ C + C C +G+ ++C P +Y +
Sbjct: 570 GRGRCRCNV----CECHSGYQLPLCQECPGCPSPCGKYISCAECLKF 612
Score = 33.1 bits (75), Expect = 0.54
Identities = 19/122 (15%), Positives = 29/122 (23%), Gaps = 17/122 (13%)
Query: 420 EDTCNCVPNAECRDGVCVCLPDYYGDG---YVSCRPECVQNSDCPRNKACIRN------- 469
C CR VC C Y C C + C +
Sbjct: 563 PRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCS 622
Query: 470 -KCKNPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCG 528
C + +G C + C T Q + +Y + + G
Sbjct: 623 AACPGLQLSNNPVKGRTCKERD---SEGCWVAYTLE---QQDGMDRYLIYVDESRECVAG 676
Query: 529 PN 530
P+
Sbjct: 677 PD 678
Score = 30.5 bits (68), Expect = 3.8
Identities = 34/200 (17%), Positives = 42/200 (21%), Gaps = 59/200 (29%)
Query: 26 CVNSVPPPVQQDTCNCVPNAVCKDEVCVCLPDFYGDGYVSCRPECVLNSDCPSNKACIRN 85
C C +C C C P F G C N
Sbjct: 514 CDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGS-----------ACQCERTTEGCLN 562
Query: 86 KCKNPCVP-GTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCG 144
+ C G C C C G C+ P PSPCG
Sbjct: 563 PRRVECSGRGRCRCNV----------CECHSGYQLP---LCQ--------ECPGCPSPCG 601
Query: 145 PNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRA 204
C E FG +C AC + +
Sbjct: 602 KYISCAE-----CLKFEKGPFG------------KNC--SAACPGLQLSNNPVKGR---- 638
Query: 205 RCQVYNHNPVCSCPPGYTGN 224
C+ + C YT
Sbjct: 639 TCKERD---SEGCWVAYTLE 655
Score = 30.1 bits (67), Expect = 4.4
Identities = 18/132 (13%), Positives = 31/132 (23%), Gaps = 17/132 (12%)
Query: 26 CVNSVPPPVQQDTCNCVPNAVCKDEVCVCLPDFYGDG---YVSCRPECVLNSDCPSNKAC 82
C + + C C+ VC C + C C C
Sbjct: 553 CERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKF 612
Query: 83 IRN--------KCKNPCVPGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVY 134
+ C + +G C + C T Q + +Y
Sbjct: 613 EKGPFGKNCSAACPGLQLSNNPVKGRTCKERD---SEGCWVAYTLE---QQDGMDRYLIY 666
Query: 135 TNPCQPSPCGPN 146
+ + GP+
Sbjct: 667 VDESRECVAGPD 678
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 1e-05
Identities = 51/416 (12%), Positives = 98/416 (23%), Gaps = 162/416 (38%)
Query: 715 FIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAV-CRDNVCVCLPDYYGDG-----YTVC 768
F+ + Y + PI+ +Q P + + RD + Y D Y V
Sbjct: 82 FVEEVLRINYKFLMSPIK--TEQRQPSMMTRMYIEQRDRL-------YNDNQVFAKYNVS 132
Query: 769 RPECVRNSDCANNKACIRNKCKN--P----CVPGTCGEG----AICDVINHSVVCSCPPG 818
R + +R P + G G G A+ +++ V C
Sbjct: 133 RLQPYLK---------LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 819 ----TTGSPFIQCK-----PVIQEPVYTNPCQPSPCGPNSQCR-EVNKQAVCSCLPNYFG 868
C + + + + ++ ++ + L
Sbjct: 184 IFWLNLK----NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 869 SPPNCRPEC-TVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVI---------------- 911
S P C V L N K + N +C+++
Sbjct: 240 SKPY--ENCLLV-----LLNVQ-NAKAWNAF------NLSCKILLTTRFKQVTDFLSAAT 285
Query: 912 -NHSPICTCRPGFTGE-----------------PRIRCSPIP------------------ 935
H + T + PR + P
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 936 --------------------------RKLF-----------VPAD-------QASQENLE 951
RK+F +P + ++
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 952 SDVHQYHHLRLLSHHRNQSIHAIHH-HAVLTLSVETSTAIHHVL--AYQTTSELHQ 1004
V++ H L+ +S +I + L + +E A+H + Y
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Score = 31.0 bits (69), Expect = 2.6
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 19/63 (30%)
Query: 380 HHIHKNQDMDQYISLGYM-LCHMDILSSEYIQVYTVQPVIQEDTCNCVP--------NAE 430
HH H + D + G + DIL V+ + C V E
Sbjct: 1 HHHHHHMDFE----TGEHQYQYKDIL-----SVF-EDAFVDNFDCKDVQDMPKSILSKEE 50
Query: 431 CRD 433
Sbjct: 51 IDH 53
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 44.4 bits (105), Expect = 6e-05
Identities = 32/225 (14%), Positives = 56/225 (24%), Gaps = 50/225 (22%)
Query: 471 CKNPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPN 530
+ C+ TC +V N+ + C+ SPC
Sbjct: 8 LERECMEETCSYEEAREVF-----EDSDKTNEF---------WNKYKDGDQCETSPCQNQ 53
Query: 531 SQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCPGTCGQNANC 590
+C++ + C+CL + G NC E C + C
Sbjct: 54 GKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCS--------------LDNGDCDQFC 95
Query: 591 RVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSP 650
++ C+C G+T + P P PCG + R
Sbjct: 96 HEEQNSVVCSCARGYTLA---DNGK------------ACIPTGPYPCGKQTLERRKRSVA 140
Query: 651 SCSCLPNYIGAPPNCRP--ECVQNTECPYDKACINEKCRDPCPGS 693
+ +P + ++ P G
Sbjct: 141 QATSSSGEAPDSITWKPYDAADLD-PTENPFDLLDFNQTQPERGD 184
Score = 43.6 bits (103), Expect = 9e-05
Identities = 28/185 (15%), Positives = 40/185 (21%), Gaps = 41/185 (22%)
Query: 89 NPCVPGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQ 148
+ C C C CTC G G E C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--------NCELFTRKLCSLDNGDCDQF 94
Query: 149 CREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPC-PGSCGYRARCQ 207
C E + VCSC Y + N K P P CG + +
Sbjct: 95 CHEEQNSVVCSCARGYTLA--------------------DNGKACIPTGPYPCGKQTLER 134
Query: 208 VYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARCRVQNEHALCE 267
+ G + + P D P + N+
Sbjct: 135 RKRSVAQATSSSGEAPDSITW------------KPYDAADLDPTENPFDLLDFNQTQPER 182
Query: 268 CLPDY 272
+
Sbjct: 183 GDNNL 187
Score = 43.2 bits (102), Expect = 1e-04
Identities = 36/190 (18%), Positives = 52/190 (27%), Gaps = 45/190 (23%)
Query: 87 CKNPCVPGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPN 146
+ C+ TC +V N+ + C+ SPC
Sbjct: 8 LERECMEETCSYEEAREVF-----EDSDKTNEF---------WNKYKDGDQCETSPCQNQ 53
Query: 147 SQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARC 206
+C++ + C+CL + G C E C LD G C C
Sbjct: 54 GKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLD------------NGDCD--QFC 95
Query: 207 QVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARCRVQNEHALC 266
++ VCSC GYT P P PCG R + A
Sbjct: 96 HEEQNSVVCSCARGYTLADNG-------------KACIPTGPYPCGKQTLERRKRSVAQA 142
Query: 267 ECLPDYYGNP 276
+
Sbjct: 143 TSSSGEAPDS 152
Score = 42.4 bits (100), Expect = 2e-04
Identities = 29/187 (15%), Positives = 38/187 (20%), Gaps = 41/187 (21%)
Query: 473 NPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQ 532
+ C C C CTC G G E C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--------NCELFTRKLCSLDNGDCDQF 94
Query: 533 CREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCPGTCGQNANCRV 592
C E VCSC Y + + C P CG+ R
Sbjct: 95 CHEEQNSVVCSCARGYTLA--DNGKACIPTGPYP-----------------CGKQTLERR 135
Query: 593 INHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSC 652
T +G D + + P D N +
Sbjct: 136 KRSVAQATSSSGEAPDSIT--------------WKPYDAADLDPTENPFDLLDFNQTQPE 181
Query: 653 SCLPNYI 659
N
Sbjct: 182 RGDNNLT 188
Score = 36.7 bits (85), Expect = 0.017
Identities = 23/138 (16%), Positives = 33/138 (23%), Gaps = 27/138 (19%)
Query: 791 NPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQ 850
+ C C C C+C G G C+ ++ C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK---NCELFTRKL-----CSLDNGDCDQF 94
Query: 851 CREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRV 910
C E VCSC Y + + C P CG+ R
Sbjct: 95 CHEEQNSVVCSCARGYTLA--DNGKACIPTGPYP-----------------CGKQTLERR 135
Query: 911 INHSPICTCRPGFTGEPR 928
T G +
Sbjct: 136 KRSVAQATSSSGEAPDSI 153
Score = 35.9 bits (83), Expect = 0.034
Identities = 29/165 (17%), Positives = 44/165 (26%), Gaps = 36/165 (21%)
Query: 743 CAPNAVCRDNV----CVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPCVPGTC 798
C C+D + C CL + G +N + K C +
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEG-----------KNCELFTRKLCSLDNGDC------- 91
Query: 799 GEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCREVNKQA 858
C +SVVCSC G T + P P PCG + R A
Sbjct: 92 --DQFCHEEQNSVVCSCARGYTLA---DNGKAC------IPTGPYPCGKQTLERRKRSVA 140
Query: 859 VCSCLPNYFGSPPNCRP--ECTVNTDCPLDKACVNQKCVDPCPGS 901
+ +P ++ ++ P G
Sbjct: 141 QATSSSGEAPDSITWKPYDAADLDP-TENPFDLLDFNQTQPERGD 184
Score = 34.3 bits (79), Expect = 0.11
Identities = 31/169 (18%), Positives = 43/169 (25%), Gaps = 33/169 (19%)
Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 688
+ C SPC +C+D G +C+CL + G NC E C D
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLD---------- 87
Query: 689 PCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAV 748
+ C +S VC C G+ K P P C +
Sbjct: 88 ----NGDCDQFCHEEQNSVVCSCARGYTLADNG----KACIPT-------GPYPCGKQTL 132
Query: 749 CRDNV----CVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPC 793
R D T + N + P
Sbjct: 133 ERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPE 181
Score = 33.2 bits (76), Expect = 0.27
Identities = 27/167 (16%), Positives = 43/167 (25%), Gaps = 34/167 (20%)
Query: 421 DTCNCVPNAECRDGV----CVCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCV 476
+T C +C+DG+ C CL + G C + C
Sbjct: 46 ETSPCQNQGKCKDGLGEYTCTCLEGFEGKN-------CELFTR-------------KLCS 85
Query: 477 PGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREV 536
C ++V+C+C G T + P P PCG + R
Sbjct: 86 LDNGDCDQFCHEEQNSVVCSCARGYTL---------ADNGKACIPTGPYPCGKQTLERRK 136
Query: 537 HKQAVCSCLPNYFGSPPNCRP-ECTVNSDCPLDKACFNQKCVDPCPG 582
A + +P + + P G
Sbjct: 137 RSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERG 183
Score = 32.8 bits (75), Expect = 0.36
Identities = 23/138 (16%), Positives = 41/138 (29%), Gaps = 32/138 (23%)
Query: 789 CKNPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPN 848
+ C+ TC +V + + C+ SPC
Sbjct: 8 LERECMEETCSYEEAREVF-----EDSDKTNEFWN---------KYKDGDQCETSPCQNQ 53
Query: 849 SQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANC 908
+C++ + C+CL + G NC E C + + C
Sbjct: 54 GKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCS--------------LDNGDCDQFC 95
Query: 909 RVINHSPICTCRPGFTGE 926
+S +C+C G+T
Sbjct: 96 HEEQNSVVCSCARGYTLA 113
Score = 30.1 bits (68), Expect = 2.8
Identities = 26/209 (12%), Positives = 42/209 (20%), Gaps = 45/209 (21%)
Query: 170 GCRPECTVNSDCPLDRACQNQKC---VDPC-PGSCGYRARCQVYNHNPVCSCPPGYTGNP 225
C E D+ + D C C + +C+ C+C G+ G
Sbjct: 16 TCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG-- 73
Query: 226 FSQCLLPPTPTPTQATPTDPCFPSPCGSNARCRVQNEHALCECLPDYYGNPYEGCRPECL 285
C + C + C + +C C Y C+
Sbjct: 74 -KNC---------ELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLAD---NGKACI 120
Query: 286 INSDCPLSLACIKNHCRDPCPGTCGVQAICSVSNHIPICYCPAGFTGDAFRQCSPIPQRE 345
P CG Q + + +G D
Sbjct: 121 PTGPYP-----------------CGKQTLERRKRSVAQATSSSGEAPD---------SIT 154
Query: 346 PEYRDPCSTTQCGLNAICTVINGAAQCAC 374
+ D N
Sbjct: 155 WKPYDAADLDPTENPFDLLDFNQTQPERG 183
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 45.8 bits (108), Expect = 6e-05
Identities = 42/213 (19%), Positives = 65/213 (30%), Gaps = 39/213 (18%)
Query: 629 VNPCIPSPCGPYSQCRDI-NGSPSC-SCLPNYIGAPPNCRP--ECVQNTECPYDKACINE 684
+ C+ +PC P +QC +GS SC C ++G +C EC
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVP----------- 51
Query: 685 KCRDPCPGSCGQGAQCRVINHSPVCY-CPDGFIGDAFSSCYPKPIEPIQAPEQQADPC-- 741
D C S + +C C CP + G+ + + + + +PC
Sbjct: 52 ---DIC-FSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKD 107
Query: 742 ---ICAPNAVCRDN--------VCVCLPDYYGDGYTVCRPECV-----RNSDCANNKACI 785
C +A C C C Y GDG + N CA N
Sbjct: 108 KTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYH 167
Query: 786 RNKCKNPCVPGTCGEGA-ICDVINHSVVCSCPP 817
K P +P + E + +
Sbjct: 168 CIKDNCPHLPNSGQEDFDKDGIGDACDDDDDND 200
Score = 45.0 bits (106), Expect = 1e-04
Identities = 50/288 (17%), Positives = 76/288 (26%), Gaps = 44/288 (15%)
Query: 519 TNPCQPSPCGPNSQCREVHKQAV--CSCLPNYFGSPPNCRP--ECTVNSDCPLDKACFNQ 574
+ C +PC P +QC + C + G+ +C EC + D +
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSK-VP 61
Query: 575 KCVDPCPG-TCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCI 633
+CV+ PG C C + G+ + ++ E NPC
Sbjct: 62 RCVNTQPGFHCL--------------PCPPRYRGNQ-PVGVGLEAAKTEKQVCEPENPCK 106
Query: 634 --PSPCGPYSQC----RDINGSPSCSCLPNYIGAPPNCRPE------CVQNTECPYDKAC 681
C +++C + C C Y G C + N C +
Sbjct: 107 DKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATY 166
Query: 682 INEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQ----- 736
K P + GQ + D P QA
Sbjct: 167 HCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVG 226
Query: 737 -QADPCICAPNAVCRDNV-----CVCLPDYYGDGYTVCRPECVRNSDC 778
+ D C N D C D GD R C +
Sbjct: 227 DRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNT 274
Score = 42.3 bits (99), Expect = 9e-04
Identities = 39/231 (16%), Positives = 62/231 (26%), Gaps = 26/231 (11%)
Query: 89 NPCVPGTCGEGAIC-DVVNHAVMCT-CPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPN 146
+ C+ C GA C + + C CP G G+ C+ + + + C
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGT-HCEDLDECALVPDICF--STSKV 60
Query: 147 SQCREINHQAVC-SCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCP---GSCGY 202
+C C C P Y G+ P ++ + + +PC +C
Sbjct: 61 PRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVC------EPENPCKDKTHNCHK 114
Query: 203 RARCQVYNH----NPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARCR 258
A C H C C GY G+ P C +NA
Sbjct: 115 HAECIYLGHFSDPMYKCECQTGYAGDGL-------ICGEDSDLDGWPNLNLVCATNATYH 167
Query: 259 VQNEHALCECLPDYYGNPYEGCRPECLINSDCPLSLACIKNHCRDPCPGTC 309
++ +G C + D N P
Sbjct: 168 CIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQA 218
Score = 39.2 bits (91), Expect = 0.007
Identities = 40/191 (20%), Positives = 55/191 (28%), Gaps = 30/191 (15%)
Query: 135 TNPCQPSPCGPNSQCREINHQAV--CSCLPNYFGSPPGCRP--ECTVNSDCPLDRACQNQ 190
+ C +PC P +QC + C + G+ C EC + D C +
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPD-----ICFST 57
Query: 191 KCVDPCPGSCGYRARCQVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQA-TPTDPCF-- 247
V C + C CPP Y GN L T Q P +PC
Sbjct: 58 SKVPRCVNTQPGF-HCL--------PCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDK 108
Query: 248 PSPCGSNARCRVQNEHA----LCECLPDYYGNPYEGCRPECL-----INSDCPLSLACIK 298
C +A C + CEC Y G+ L +N C +
Sbjct: 109 THNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHC 168
Query: 299 NHCRDPCPGTC 309
P
Sbjct: 169 IKDNCPHLPNS 179
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 40.8 bits (96), Expect = 5e-04
Identities = 25/166 (15%), Positives = 39/166 (23%), Gaps = 36/166 (21%)
Query: 522 CQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCP 581
C + C +C C P++ +P CVD
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-------------------CVDTRS 46
Query: 582 GTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYS 641
G C + R N + +C+ + G C + +PC
Sbjct: 47 GNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL-------------GKAWGTPCEMCP 93
Query: 642 QCRDINGSPSCSCLPNYIGAPPNCRP----ECVQNTECPYDKACIN 683
C + P EC + CIN
Sbjct: 94 AVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCIN 139
Score = 32.7 bits (75), Expect = 0.26
Identities = 23/136 (16%), Positives = 32/136 (23%), Gaps = 28/136 (20%)
Query: 793 CVPGTCGEGAICDVINHSVVCSCPPGTTGSPF-IQCKPVIQEPVYTNPCQPSPCGPNSQC 851
C+ T C S +C CPP +P + C C + +
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDT-------RSG---NCYLDIRP 55
Query: 852 REVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVI 911
R N CS S +C C C
Sbjct: 56 RGDNGDTACSNEIGVGVSKASC---CCSLGKA--------------WGTPCEMCPAVNTS 98
Query: 912 NHSPICTCRPGFTGEP 927
+ +C GF P
Sbjct: 99 EYKILCPGGEGFRPNP 114
Score = 32.7 bits (75), Expect = 0.27
Identities = 20/95 (21%), Positives = 26/95 (27%), Gaps = 19/95 (20%)
Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 688
VN C+ C + GS C C P++ P C D
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-------------------CVD 43
Query: 689 PCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSC 723
G+C + R N C G S C
Sbjct: 44 TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC 78
Score = 31.6 bits (72), Expect = 0.76
Identities = 19/129 (14%), Positives = 27/129 (20%), Gaps = 28/129 (21%)
Query: 246 CFPSPCGSNARCRVQNEHALCECLPDYYGNPYEGCRPECLINSDCPLSLACIKNHCRDPC 305
C + C +C+C PD+ NP + C D
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNP--------------------TRVGCVDTR 45
Query: 306 PGTCGVQAICSVSNHIPICYCPAGFTGDAFRQCSPIPQREPEYRDPCSTTQCGLNAICTV 365
G C + N C G C + T C +
Sbjct: 46 SGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL--------GKAWGTPCEMCPAVNT 97
Query: 366 INGAAQCAC 374
C
Sbjct: 98 SEYKILCPG 106
Score = 30.8 bits (70), Expect = 1.2
Identities = 16/100 (16%), Positives = 23/100 (23%), Gaps = 11/100 (11%)
Query: 796 GTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCREVN 855
G C N CS G S C + +PC
Sbjct: 47 GNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL-------GKAWGTPCEMCPAVNTSE 99
Query: 856 KQAVCSCLPNYFGSPPNCRP----ECTVNTDCPLDKACVN 891
+ +C + +P EC C+N
Sbjct: 100 YKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCIN 139
Score = 30.0 bits (68), Expect = 1.9
Identities = 22/135 (16%), Positives = 31/135 (22%), Gaps = 26/135 (19%)
Query: 91 CVPGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQCR 150
C+ T C + +C CPP +P + V T C + + R
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNP------TRVGCVDTRSG---NCYLDIRPR 56
Query: 151 EINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARCQVYN 210
N CS S C C
Sbjct: 57 GDNGDTACSNEIGVGVSKASC---CCSLGKAWGTPCEMCPAVNT-SEYKI---------- 102
Query: 211 HNPVCSCPPGYTGNP 225
+C G+ NP
Sbjct: 103 ---LCPGGEGFRPNP 114
Score = 29.6 bits (67), Expect = 2.6
Identities = 32/178 (17%), Positives = 47/178 (26%), Gaps = 51/178 (28%)
Query: 52 CVCLPDFYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICDVVNHAVMC 111
C C PDF + P+ C+ G C N C
Sbjct: 26 CDCPPDFELN---------------PTRVGCV------DTRSGNCYLDIRPRGDNGDTAC 64
Query: 112 TCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGC 171
+ G S C + +PC ++ +C + +P
Sbjct: 65 SNEIGVGVSKASCCCSL-------GKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITV 117
Query: 172 RP----ECTVNSDCPLDRACQNQKCVDPCPGSCGYRARCQVYNHNPVCSCPPGYTGNP 225
EC CQ KC++ GS ++ C CP GY N
Sbjct: 118 ILEDIDECQELPGL-----CQGGKCIN-TFGS--FQ-----------CRCPTGYYLNE 156
Score = 29.3 bits (66), Expect = 3.9
Identities = 16/92 (17%), Positives = 24/92 (26%), Gaps = 19/92 (20%)
Query: 840 CQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCP 899
C + C +C C P++ +P CVD
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-------------------CVDTRS 46
Query: 900 GSCGQNANCRVINHSPICTCRPGFTGEPRIRC 931
G+C + R N C+ G C
Sbjct: 47 GNCYLDIRPRGDNGDTACSNEIGVGVSKASCC 78
Score = 28.1 bits (63), Expect = 9.2
Identities = 33/202 (16%), Positives = 47/202 (23%), Gaps = 56/202 (27%)
Query: 138 CQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCP 197
C + C +C C P++ +P CVD
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-------------------CVDTRS 46
Query: 198 GSCGYRARCQVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARC 257
G+C R + N + CS G + S C + +PC
Sbjct: 47 GNCYLDIRPRGDNGDTACSNEIGVGVSKASCC-----------CSLGKAWGTPCEMCPAV 95
Query: 258 RVQNEHALCECLPDYYGNPYEGCRP---ECLINSDCPLSLACIKNHCRDPCPGTCGVQAI 314
LC + NP EC CI
Sbjct: 96 NTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCI----------------- 138
Query: 315 CSVSNHIP--ICYCPAGFTGDA 334
N C CP G+ +
Sbjct: 139 ----NTFGSFQCRCPTGYYLNE 156
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 43.0 bits (100), Expect = 6e-04
Identities = 28/193 (14%), Positives = 43/193 (22%), Gaps = 26/193 (13%)
Query: 740 PCICAPNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPCVPGTCG 799
P C V ++ C+ C + C ++ C + G C
Sbjct: 160 PGTAKGKTNCPATVINGQFVERCWTHSHCQKVC--PTICKSHGCTAEGLCCHSECLGNCS 217
Query: 800 EGAI------CDVINHSVVC--SCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQC 851
+ C C +CPP + +
Sbjct: 218 QPDDPTKCVACRNFYLDGRCVETCPPPY---------------YHFQDWRCVNFSFCQDL 262
Query: 852 REVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVI 911
K + Y C PEC C+ PCP C + I
Sbjct: 263 HHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC-TPCLGPCPKVCHLLEGEKTI 321
Query: 912 NHSPICTCRPGFT 924
+ G T
Sbjct: 322 DSVTSAQELRGCT 334
Score = 36.4 bits (83), Expect = 0.058
Identities = 31/210 (14%), Positives = 45/210 (21%), Gaps = 30/210 (14%)
Query: 24 YFCVNSVPPPVQQDTC--NCVPNAVCKDEVCVCLPDFYGDGYVSCRPECVLNSDCPSNKA 81
+ +N D C C V + C+ C + C S+
Sbjct: 144 HIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVC--PTICKSHGC 201
Query: 82 CIRNKCKNPCVPGTCGEGAI------CDVVNHAVMC--TCPPGTTGSPFIQCKPIQNEPV 133
C + G C + C C TCPP
Sbjct: 202 TAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPY---------------Y 246
Query: 134 YTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLD-RACQNQKC 192
+ + + Y C PEC C C
Sbjct: 247 HFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC--TPC 304
Query: 193 VDPCPGSCGYRARCQVYNHNPVCSCPPGYT 222
+ PCP C + + G T
Sbjct: 305 LGPCPKVCHLLEGEKTIDSVTSAQELRGCT 334
Score = 33.4 bits (75), Expect = 0.44
Identities = 46/267 (17%), Positives = 70/267 (26%), Gaps = 53/267 (19%)
Query: 391 YISLGYMLCHMDILSSEYIQVYTVQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSC 450
I LC++ + I I + + + G + +
Sbjct: 118 RIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNC-----PAT 172
Query: 451 RPECVQNSDCPRNKACIRNKCKNPCVPGTC-GEGAICDVINHAVMCTCPPGTTGSPFIQC 509
C + C + C C C EG C C +
Sbjct: 173 VINGQFVERCWTHSHC-QKVCPTICKSHGCTAEGLCCH-------SECLGNCSQ------ 218
Query: 510 KPVQNEPVYTNPCQPSPCGPNSQCREVHKQAVC--SCLPNYFGSPPNCRPECTVNSDCPL 567
P P+ C CR + C +C P Y+ +
Sbjct: 219 -----------PDDPTKC---VACRNFYLDGRCVETCPPPYYHFQDWRCVNFS------- 257
Query: 568 DKACFNQKCVDPCPGTCGQNANCRVINHNPSCT--CKAGFTGDPR-VFCSRIPPPPPQES 624
F Q C + Q + VI HN C C +G+T + + C+ P P+
Sbjct: 258 ----FCQDLHHKCKNSRRQGCHQYVI-HNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVC 312
Query: 625 PPEYVNPCIPS--PCGPYSQCRDINGS 649
I S C INGS
Sbjct: 313 HLLEGEKTIDSVTSAQELRGCTVINGS 339
Score = 30.3 bits (67), Expect = 4.2
Identities = 42/248 (16%), Positives = 60/248 (24%), Gaps = 75/248 (30%)
Query: 573 NQKCVDPCPGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPC 632
N++C D CPGT NC P+ N
Sbjct: 152 NEECGDICPGTAKGKTNC------PATVI----------------------------NGQ 177
Query: 633 IPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPC-- 690
C +S C+ C C + C + C + +C C
Sbjct: 178 FVERCWTHSHCQ------------------KVCPTICKSHG-CTAEGLCCHSECLGNCSQ 218
Query: 691 PGSCGQGAQCRVINHSPVCY--CPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAV 748
P + CR C CP + C C +
Sbjct: 219 PDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNF------------SFC-QDLHHK 265
Query: 749 CRDNVCVCLPDYYGDGYTVCRPECVRNSDC-ANNKACIRNKCKNPCVPGTCGEGAICDVI 807
C+++ Y C PEC ++N C C PC P C I
Sbjct: 266 CKNSRRQGCHQYVIHNNK-CIPECPSGYTMNSSNLLCT--PCLGPC-PKVCHLLEGEKTI 321
Query: 808 NHSVVCSC 815
+
Sbjct: 322 DSVTSAQE 329
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 42.4 bits (99), Expect = 8e-04
Identities = 55/359 (15%), Positives = 82/359 (22%), Gaps = 68/359 (18%)
Query: 554 NCRPECTVNSDCPLDKACFNQKCVDPCP-GTCGQNANCRVINHNPSCTCKAGFTGDPRVF 612
+ C N P K+C K D + C GF V
Sbjct: 369 SFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQ 428
Query: 613 CSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQN 672
+ Q + C C C P ++G+ C
Sbjct: 429 VTFDCDCACQAQAEPNSHRCNNGNGTFEC--------GVCRCGPGWLGSQCEC------- 473
Query: 673 TECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQ 732
+E Y + +E C Q +C C C G K E
Sbjct: 474 SEEDYRPSQQDECSPREGQPVCSQRGEC----LCGQCVCHSSDFGK----ITGKYCECDD 525
Query: 733 APEQQADPCICAPNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNP 792
+ +C+ + C C+C D+ G C +D + + +
Sbjct: 526 FSCVRYKGEMCSGHGQCSCGDCLCDSDWTGY-----YCNCTTRTDTCMSSNGLLCSGRGK 580
Query: 793 CVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCR 852
C G+C PG+ G C+ P P C +C
Sbjct: 581 CECGSC--------------VCIQPGSYGD---TCE--------KCPTCPDACTFKKEC- 614
Query: 853 EVNKQAVCSCLPNYFG---SPPNCRPECT---VNTDCPLDKACVNQKCVDPCPGSCGQN 905
C G C C + D C C
Sbjct: 615 -------VECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCTYKNEDDCVVR 666
Score = 42.4 bits (99), Expect = 8e-04
Identities = 50/331 (15%), Positives = 77/331 (23%), Gaps = 56/331 (16%)
Query: 496 TCPPGTTGSPFIQCKPVQ-NEPVYTNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPN 554
TC C ++ + V + P + + + V +
Sbjct: 373 TCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFD 432
Query: 555 CRPECTVNSDCPLDKACFNQKCVDPCPGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCS 614
C C ++ + + C C G+ G C
Sbjct: 433 CDCACQAQAEPNSHRCNNGNGTFECG-----------------VCRCGPGWLGS---QCE 472
Query: 615 RIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTE 674
++ P + C P P R C C + G C
Sbjct: 473 C----SEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFG--KITGKYC----- 521
Query: 675 CPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAP 734
C + C C QC C C + G +
Sbjct: 522 -----ECDDFSCVRYKGEMCSGHGQC----SCGDCLCDSDWTGYYCNCTTRTD------T 566
Query: 735 EQQADPCICAPNAVCRDNVCVCL-PDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNP- 792
++ +C+ C CVC+ P YGD C C K C+ K +
Sbjct: 567 CMSSNGLLCSGRGKCECGSCVCIQPGSYGDT---CEKCPTCPDACTFKKECVECKKFDRG 623
Query: 793 --CVPGTCGEGAICDVINHSVVCSCPPGTTG 821
TC C SV G
Sbjct: 624 ALHDENTCNRY--CRDEIESVKELKDTGKDA 652
Score = 39.7 bits (92), Expect = 0.005
Identities = 44/277 (15%), Positives = 66/277 (23%), Gaps = 35/277 (12%)
Query: 664 NCRPECVQNTECPYDKACINEKCRDPCP-GSCGQGAQCRVINHSPVCYCPDGFIGDAFSS 722
+ C+ N P K+C+ K D + C P GF
Sbjct: 369 SFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQ 428
Query: 723 CYPKPIEPIQAPEQQADPCICAPNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNK 782
QA + N VC C P + G E +
Sbjct: 429 VTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCEC--SEEDYRPSQQDE- 485
Query: 783 ACIRNKCKNPCVP-GTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPC- 840
C + + C G C G C C G + ++
Sbjct: 486 -CSPREGQPVCSQRGECLCG----------QCVCHSSDFGK---ITGKYCECDDFSCVRY 531
Query: 841 QPSPCGPNSQCREVNKQAVCSCLPNYFG-----SPPNCRPECTVNTDCPLDKACVNQKCV 895
+ C + QC C C ++ G + + C C CV
Sbjct: 532 KGEMCSGHGQCSC----GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCV 587
Query: 896 DPCPG----SCGQNANCRVI--NHSPICTCRPGFTGE 926
PG +C + C C+ G
Sbjct: 588 CIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGA 624
Score = 34.7 bits (79), Expect = 0.17
Identities = 43/310 (13%), Positives = 65/310 (20%), Gaps = 39/310 (12%)
Query: 422 TCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNK------CKNPC 475
C+ N S + I+
Sbjct: 371 NATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVT 430
Query: 476 VPGTCGEGAICDVINHAV----------MCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPS 525
C A + +H +C C PG G +C P + C P
Sbjct: 431 FDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLG-SQCECSEEDYRPSQQDECSPR 489
Query: 526 PCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCPGTCG 585
P R C C + FG C C + CV C
Sbjct: 490 EGQPVCSQRGECLCGQCVCHSSDFG--KITGKYC----------ECDDFSCVRYKGEMCS 537
Query: 586 QNANCRVINHNPSCTCKAGFTGDP-RVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCR 644
+ C C C + +TG C CG +
Sbjct: 538 GHGQC----SCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCE---CGSCVCIQ 590
Query: 645 DINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQ-CRVI 703
+ +C P + ECV+ + C C +
Sbjct: 591 PGSYGDTCEKCPTCPD-ACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTG 649
Query: 704 NHSPVCYCPD 713
+ C +
Sbjct: 650 KDAVNCTYKN 659
Score = 32.8 bits (74), Expect = 0.80
Identities = 38/250 (15%), Positives = 56/250 (22%), Gaps = 43/250 (17%)
Query: 423 CNCVPNAECRDGVCVCLPDYYGDGYVSCR-PECVQNSDCPRNKACIRNKCKNPCVP-GTC 480
N GVC C P + G C E C + + C G C
Sbjct: 447 RCNNGNGTFECGVCRCGPGWLGS---QCECSEEDYRPSQ--QDECSPREGQPVCSQRGEC 501
Query: 481 GEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREVHKQA 540
G C C G I K + + + C + QC
Sbjct: 502 LCGQ----------CVCHSSDFGK--ITGKYCECDDFSCVRYKGEMCSGHGQCSC----G 545
Query: 541 VCSCLPNYFG-----SPPNCRPECTVNSDCPLDKACFNQKCVDPCPG----TCGQNANCR 591
C C ++ G + + C C CV PG TC + C
Sbjct: 546 DCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCP 605
Query: 592 VI--NHNPSCTCKAGFTGDPRVFCS-RIPPPPPQESPPEYVNPCIPSPCGPYSQCRDING 648
CK G ++ ++
Sbjct: 606 DACTFKKECVECKKFDRGA---LHDENTCNRYCRDEIESVKELKDTGKDAVNCTYKN--- 659
Query: 649 SPSCSCLPNY 658
C+ +
Sbjct: 660 --EDDCVVRF 667
Score = 32.0 bits (72), Expect = 1.4
Identities = 42/248 (16%), Positives = 64/248 (25%), Gaps = 39/248 (15%)
Query: 39 CNCVPNAVCKDEVCVCLPDFYGDGYVSCRPECVLNSDCPSNK-ACIRNKCKNPCVP-GTC 96
N + VC C P + G C EC PS + C + + C G C
Sbjct: 447 RCNNGNGTFECGVCRCGPGWLGS---QC--ECSEEDYRPSQQDECSPREGQPVCSQRGEC 501
Query: 97 GEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQCREINHQA 156
G C C G I K + + + C + QC
Sbjct: 502 LCGQ----------CVCHSSDFGK--ITGKYCECDDFSCVRYKGEMCSGHGQCSC----G 545
Query: 157 VCSCLPNYFG-----SPPGCRPECTVNSDCPLDRACQNQKCVDPCPG----SCGYRARCQ 207
C C ++ G + + C C+ CV PG +C C
Sbjct: 546 DCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCP 605
Query: 208 V--YNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARCRVQNEHAL 265
C G + + + N C +NE
Sbjct: 606 DACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVN--CTYKNE--- 660
Query: 266 CECLPDYY 273
+C+ +
Sbjct: 661 DDCVVRFQ 668
Score = 31.6 bits (71), Expect = 1.5
Identities = 34/196 (17%), Positives = 48/196 (24%), Gaps = 27/196 (13%)
Query: 158 CSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARCQVYNHNPVCSC 217
++ P G + V D ACQ Q + + G VC C
Sbjct: 408 QEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNG-----NGTFECGVCRC 462
Query: 218 PPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARCRVQNEHALCECLPDYYGNPY 277
PG+ G +C Q + C C C C +G
Sbjct: 463 GPGWLG-SQCECSEEDYRPSQQDECSPREGQPVCSQRGEC----LCGQCVCHSSDFG--- 514
Query: 278 EGCRPECLINSDCPLSLACIKNHCRDPCPGTCGVQAICSVSNHIPICYCPAGFTGDAFRQ 337
+ C C C C CS + C C + +TG
Sbjct: 515 KITGKYC----------ECDDFSCVRYKGEMCSGHGQCSCGD----CLCDSDWTGYYCNC 560
Query: 338 CSPIPQREPEYRDPCS 353
+ CS
Sbjct: 561 TTRTDTCMSSNGLLCS 576
Score = 31.2 bits (70), Expect = 1.9
Identities = 32/199 (16%), Positives = 43/199 (21%), Gaps = 33/199 (16%)
Query: 419 QEDTCNCVPNAECRDGVCVCLPDYYGDGY------VSCRPECVQNSDCPRNKACIRNKCK 472
+E C EC G CVC +G + C + C C
Sbjct: 489 REGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCL 548
Query: 473 NPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKP---VQNEPVYT------NPCQ 523
C G C+ C G S +C+ V +P P
Sbjct: 549 --CDSDWTGYY--CNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTC 604
Query: 524 PSPCGPNSQCREVHKQAVCSCLPNYFG---SPPNCRPECT---VNSDCPLDKACFNQKCV 577
P C +C C G C C + D C
Sbjct: 605 PDACTFKKEC--------VECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCT 656
Query: 578 DPCPGTCGQNANCRVINHN 596
C +
Sbjct: 657 YKNEDDCVVRFQYYEDSSG 675
Score = 30.8 bits (69), Expect = 2.7
Identities = 34/216 (15%), Positives = 47/216 (21%), Gaps = 34/216 (15%)
Query: 25 FCVNSVPPPVQQD-TCNCVPNAVCKDEVCVCLPDFYGDGYVSCRPECVLNSDCPSNKACI 83
V +P + C+ N V S + I
Sbjct: 357 LEVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTI 416
Query: 84 RNKCKNPCVPGTCGEGAICDVVNHAV----------------MCTCPPGTTGSPFIQCKP 127
+ + C A +C C PG G +C
Sbjct: 417 KPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLG-SQCECSE 475
Query: 128 IQNEPVYTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRAC 187
P + C P P R C C + FG C C
Sbjct: 476 EDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFG--KITGKYC----------EC 523
Query: 188 QNQKCVDPCPGSCGYRARCQVYNHNPVCSCPPGYTG 223
+ CV C +C C C +TG
Sbjct: 524 DDFSCVRYKGEMCSGHGQC----SCGDCLCDSDWTG 555
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 38.4 bits (90), Expect = 0.002
Identities = 35/170 (20%), Positives = 49/170 (28%), Gaps = 45/170 (26%)
Query: 89 NPCVPGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQ 148
C+ TC +V N+ + C+ SPC +
Sbjct: 10 RECMEETCSYEEAREVF-----EDSDKTNEF---------WNKYKDGDQCETSPCQNQGK 55
Query: 149 CREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARCQV 208
C++ + C+CL + G C E C LD G C C
Sbjct: 56 CKDGLGEYTCTCLEGFEGK--NC--ELFTRKLCSLD------------NGDCD--QFCHE 97
Query: 209 YNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARCR 258
++ VCSC GYT + P P PCG R
Sbjct: 98 EQNSVVCSCARGYTL---ADN----------GKACIPTGPYPCGKQTLER 134
Score = 32.3 bits (74), Expect = 0.28
Identities = 16/79 (20%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Query: 791 NPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQ 850
+ C C C C+C G G C+ ++ C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK---NCELFTRKL-----CSLDNGDCDQF 94
Query: 851 CREVNKQAVCSCLPNYFGS 869
C E VCSC Y +
Sbjct: 95 CHEEQNSVVCSCARGYTLA 113
Score = 32.3 bits (74), Expect = 0.29
Identities = 25/114 (21%), Positives = 34/114 (29%), Gaps = 33/114 (28%)
Query: 743 CAPNAVCRDNV----CVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPCVPGTC 798
C C+D + C CL + G +N + K C +
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEG-----------KNCELFTRKLCSLDNGDC------- 91
Query: 799 GEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCR 852
C +SVVCSC G T + P P PCG + R
Sbjct: 92 --DQFCHEEQNSVVCSCARGYTLA---DNGKAC------IPTGPYPCGKQTLER 134
Score = 31.9 bits (73), Expect = 0.36
Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 688
+ C SPC +C+D G +C+CL + G NC + C
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNCELF-------------TRKLCSL 86
Query: 689 PCPGSCGQGAQCRVINHSPVCYCPDGFIGD 718
C +S VC C G+
Sbjct: 87 DN---GDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 31.9 bits (73), Expect = 0.41
Identities = 23/136 (16%), Positives = 39/136 (28%), Gaps = 32/136 (23%)
Query: 791 NPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQ 850
C+ TC +V + C+ SPC +
Sbjct: 10 RECMEETCSYEEAREVF-----EDSDKTNEFW---NKYKDG------DQCETSPCQNQGK 55
Query: 851 CREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRV 910
C++ + C+CL + G NC E C + + C
Sbjct: 56 CKDGLGEYTCTCLEGFEGK--NC--ELFTRKLCS--------------LDNGDCDQFCHE 97
Query: 911 INHSPICTCRPGFTGE 926
+S +C+C G+T
Sbjct: 98 EQNSVVCSCARGYTLA 113
Score = 31.9 bits (73), Expect = 0.42
Identities = 19/94 (20%), Positives = 25/94 (26%), Gaps = 10/94 (10%)
Query: 473 NPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQ 532
+ C C C CTC G G C+ + C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK---NCELFTRKL-----CSLDNGDCDQF 94
Query: 533 CREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCP 566
C E VCSC Y + + C P
Sbjct: 95 CHEEQNSVVCSCARGYTLA--DNGKACIPTGPYP 126
Score = 30.7 bits (70), Expect = 0.99
Identities = 23/114 (20%), Positives = 34/114 (29%), Gaps = 33/114 (28%)
Query: 425 CVPNAECRDGV----CVCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCVPGTC 480
C +C+DG+ C CL + G +N K C
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEG-----------------KNCELFTRKL---CSLDNG 89
Query: 481 GEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCR 534
C ++V+C+C G T + P P PCG + R
Sbjct: 90 DCDQFCHEEQNSVVCSCARGYTL---------ADNGKACIPTGPYPCGKQTLER 134
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 38.5 bits (90), Expect = 0.003
Identities = 22/123 (17%), Positives = 37/123 (30%), Gaps = 32/123 (26%)
Query: 136 NPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDP 195
+ C+P+PC C++ + C C + G C +++ C + Q C
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATCNIKNGRCKQFC--- 99
Query: 196 CPGSCGYRARCQVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNA 255
+ +CSC GY + P P PCG +
Sbjct: 100 ----------KTGADSKVLCSCTTGYRL---APD----------QKSCKPAVPFPCGRVS 136
Query: 256 RCR 258
Sbjct: 137 VSH 139
Score = 33.1 bits (76), Expect = 0.15
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 11/88 (12%)
Query: 790 KNPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNS 849
+ C P C G +C +S C C G G C+ + +
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG---KNCE------LDATCNIKNGRCKQF 98
Query: 850 QCREVNKQAVCSCLPNYFGSPPNCRPEC 877
+ + +CSC Y + + C
Sbjct: 99 CKTGADSKVLCSCTTGYRLA--PDQKSC 124
Score = 33.1 bits (76), Expect = 0.18
Identities = 23/129 (17%), Positives = 34/129 (26%), Gaps = 37/129 (28%)
Query: 735 EQQADPCI---CAPNAVCRDNV----CVCLPDYYGDGYTVCRPECVRNSDCANNKACIRN 787
D C C +C+D++ C C + G C ++ C
Sbjct: 45 YVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGK-------NCELDATCNIK------ 91
Query: 788 KCKNPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGP 847
N C + V+CSC G + + P P PCG
Sbjct: 92 ---NGRCKQFC-----KTGADSKVLCSCTTGYRLA---PDQKSC------KPAVPFPCGR 134
Query: 848 NSQCREVNK 856
S
Sbjct: 135 VSVSHSPTT 143
Score = 32.3 bits (74), Expect = 0.35
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 21/89 (23%)
Query: 838 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDP 897
+ C+P+PC C++ C C + G C ++ C
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATC-------------- 88
Query: 898 CPGSCGQNANCRV-INHSPICTCRPGFTG 925
+ C+ + +C+C G+
Sbjct: 89 NIKNGRCKQFCKTGADSKVLCSCTTGYRL 117
Score = 32.3 bits (74), Expect = 0.35
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 11/88 (12%)
Query: 472 KNPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNS 531
+ C P C G +C ++ C C G G C+ +
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG---KNCELDATC------NIKNGRCKQF 98
Query: 532 QCREVHKQAVCSCLPNYFGSPPNCRPEC 559
+ +CSC Y + + C
Sbjct: 99 CKTGADSKVLCSCTTGYRLA--PDQKSC 124
Score = 31.2 bits (71), Expect = 0.72
Identities = 21/115 (18%), Positives = 32/115 (27%), Gaps = 34/115 (29%)
Query: 41 CVPNAVCKDEV----CVCLPDFYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTC 96
C+ +CKD++ C C F G C L++ C
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGK-------NCELDATC----------NIKNG----R 94
Query: 97 GEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQCRE 151
+ + V+C+C G + P P PCG S
Sbjct: 95 CKQFCKTGADSKVLCSCTTGYRL---------APDQKSCKPAVPFPCGRVSVSHS 140
Score = 31.2 bits (71), Expect = 0.72
Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 19/90 (21%)
Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 688
+ C P+PC C+D S C C + G C + C
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATC----------NIK 91
Query: 689 PCPGSCGQGAQCRVINHSPVCYCPDGFIGD 718
+ + +C C G+
Sbjct: 92 NG---RCKQFCKTGADSKVLCSCTTGYRLA 118
Score = 30.8 bits (70), Expect = 1.0
Identities = 18/115 (15%), Positives = 29/115 (25%), Gaps = 34/115 (29%)
Query: 425 CVPNAECRDGV----CVCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCVPGTC 480
C+ C+D + C C + G C ++ C
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGK-------NCELDATC----------NIKNG----R 94
Query: 481 GEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCRE 535
+ + V+C+C G + P P PCG S
Sbjct: 95 CKQFCKTGADSKVLCSCTTGYRL---------APDQKSCKPAVPFPCGRVSVSHS 140
Score = 28.9 bits (65), Expect = 4.9
Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 20/90 (22%)
Query: 244 DPCFPSPCGSNARCRVQNEHALCECLPDYYGNPYEGCRPECLINSDCPLSLACIKNHCRD 303
D C P+PC + C+ C C + G C +++ C IKN
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEG-------KNCELDATC-----NIKNGR-- 94
Query: 304 PCPGTCGVQAICSVSNHIPICYCPAGFTGD 333
C C A V C C G+
Sbjct: 95 -CKQFCKTGADSKVL-----CSCTTGYRLA 118
Score = 28.1 bits (63), Expect = 9.1
Identities = 19/101 (18%), Positives = 26/101 (25%), Gaps = 18/101 (17%)
Query: 577 VDPC-PGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPS 635
D C P C C+ ++ C C+ GF G C I +
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEGK---NCE------------LDATCNIKN 92
Query: 636 PCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECP 676
+ CSC Y A + C P
Sbjct: 93 GRCKQFCKTGADSKVLCSCTTGYRLA--PDQKSCKPAVPFP 131
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 39.8 bits (93), Expect = 0.003
Identities = 54/279 (19%), Positives = 71/279 (25%), Gaps = 56/279 (20%)
Query: 631 PCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPP-NCRPECVQNTECPYDKACIN-----E 684
P + P + CL G + + K N
Sbjct: 86 PTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKT 145
Query: 685 KCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICA 744
+ CPG C G C N +C CPDGF G C
Sbjct: 146 CQQAECPGGCRNGGFC---NERRICECPDGFHGPHCEKALC--------------TPRCM 188
Query: 745 PNAVC-RDNVCVCLPDYYGD--GYTVCRPECVRNSDCANNKACI------RNKCKNPCVP 795
+C C+C P +YG C C C CI +C+ P
Sbjct: 189 NGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCP 248
Query: 796 GTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCREVN 855
C G C C C G G + + P CG + C E N
Sbjct: 249 QPCRNGGKC---IGKSKCKCSKGYQG------------DLCSKPVCEPGCGAHGTCHEPN 293
Query: 856 KQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKC 894
K C C + G C + L +
Sbjct: 294 K---CQCQEGWHG------RHCNKRYEASLIGTKHHHHH 323
Score = 35.2 bits (81), Expect = 0.10
Identities = 45/308 (14%), Positives = 65/308 (21%), Gaps = 101/308 (32%)
Query: 475 CVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCR 534
V + + + + ++ T C P C C
Sbjct: 115 GVAAFEVDVIVMNSEGNTILKTPQNAIFFK---TC---------QQAECPGGCRNGGFCN 162
Query: 535 EVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCPGTCGQNANCRVIN 594
E C C + G P+C C C C
Sbjct: 163 ERRI---CECPDGFHG--PHCEKAL--------------------CTPRCMNGGLCVTPG 197
Query: 595 HNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSC 654
C C GF G C + C C C C
Sbjct: 198 ---FCICPPGFYGV---NCD---------------KANCSTTCFNGGTCFYPG---KCIC 233
Query: 655 LPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDG 714
P G C CP C G +C C C G
Sbjct: 234 PPGLEG--EQCE--------------------ISKCPQPCRNGGKC---IGKSKCKCSKG 268
Query: 715 FIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVCRD-NVCVCLPDYYGDGYTVCRPECV 773
+ GD C + C + C + N C C ++G +
Sbjct: 269 YQGD---LC-----------SKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEASL 314
Query: 774 RNSDCANN 781
+ ++
Sbjct: 315 IGTKHHHH 322
Score = 34.4 bits (79), Expect = 0.15
Identities = 38/216 (17%), Positives = 49/216 (22%), Gaps = 39/216 (18%)
Query: 26 CVNSVPPPVQQDTCNCVPNAVCKDEVCVCLPDFYGDG--YVSCRPECVLNSDCPSNKACI 83
C+ + V N+ + + C C C + C
Sbjct: 109 CLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNERRICE 168
Query: 84 ------RNKCKNPCVPGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNP 137
C+ C G +C C CPPG G C
Sbjct: 169 CPDGFHGPHCEKALCTPRCMNGGLCVTPGF---CICPPGFYGV---NC---------DKA 213
Query: 138 CQPSPCGPNSQCREINHQAVCSCLPNYFG---SPPGCRPECTVNSDCPLDRACQ------ 188
+ C C C C P G C C C C+
Sbjct: 214 NCSTTCFNGGTCFYPGK---CICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQ 270
Query: 189 NQKC-VDPCPGSCGYRARCQVYNHNPVCSCPPGYTG 223
C C CG C N C C G+ G
Sbjct: 271 GDLCSKPVCEPGCGAHGTCHEPN---KCQCQEGWHG 303
Score = 33.3 bits (76), Expect = 0.34
Identities = 43/252 (17%), Positives = 58/252 (23%), Gaps = 71/252 (28%)
Query: 91 CVPGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQCR 150
V + + + + ++ T C P C C
Sbjct: 115 GVAAFEVDVIVMNSEGNTILKTPQNAIFFK---TC---------QQAECPGGCRNGGFCN 162
Query: 151 EINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARCQVYN 210
E +C C + G P C C C C
Sbjct: 163 ERR---ICECPDGFHG------PHCEKAL----------------CTPRCMNGGLCVTPG 197
Query: 211 HNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARCRVQNEHALCECLP 270
C CPPG+ G C + C + C + C C P
Sbjct: 198 ---FCICPPGFYG---VNC-------------DKANCSTTCFNGGTCFYPGK---CICPP 235
Query: 271 DYYGNPYE--GCRPECLINSDCPLSLACI------KNHC-RDPCPGTCGVQAICSVSNHI 321
G E C C C C + C + C CG C N
Sbjct: 236 GLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPN-- 293
Query: 322 PICYCPAGFTGD 333
C C G+ G
Sbjct: 294 -KCQCQEGWHGR 304
Score = 31.4 bits (71), Expect = 1.7
Identities = 51/277 (18%), Positives = 66/277 (23%), Gaps = 56/277 (20%)
Query: 398 LCHMDILSSEYIQVYTVQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVQN 457
L S + V A CL G + +
Sbjct: 69 FYEFLSLRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNS 128
Query: 458 SDCPRNKACIR----NKCKNPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQ 513
K C+ PG C G C+ C CP G G C+
Sbjct: 129 EGNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNERRI---CECPDGFHGP---HCE--- 179
Query: 514 NEPVYTNPCQPSPCGPNSQCREVHKQAVCSCLPNYFG---SPPNCRPECTVNSDCPLDKA 570
C C C C P ++G NC C C
Sbjct: 180 ------KALCTPRCMNGGLC---VTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGK 230
Query: 571 C------FNQKC-VDPCPGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQE 623
C ++C + CP C C C C G+ GD CS
Sbjct: 231 CICPPGLEGEQCEISKCPQPCRNGGKC---IGKSKCKCSKGYQGD---LCS--------- 275
Query: 624 SPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 660
P CG + C + N C C + G
Sbjct: 276 ------KPVCEPGCGAHGTCHEPN---KCQCQEGWHG 303
Score = 30.2 bits (68), Expect = 3.2
Identities = 23/144 (15%), Positives = 35/144 (24%), Gaps = 28/144 (19%)
Query: 793 CVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCR 852
V + + + ++++ + C P C C
Sbjct: 115 GVAAFEVDVIVMNSEGNTILKTPQNAIFFK---TC---------QQAECPGGCRNGGFCN 162
Query: 853 EVNKQAVCSCLPNYFG---SPPNCRPECTVNTDCPLDKACV-------NQKCVDPCPGSC 902
E C C + G C P C C C+ C +C
Sbjct: 163 ERRI---CECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTC 219
Query: 903 GQNANCRVINHSPICTCRPGFTGE 926
C + C C PG GE
Sbjct: 220 FNGGTC---FYPGKCICPPGLEGE 240
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 39.4 bits (91), Expect = 0.005
Identities = 30/155 (19%), Positives = 46/155 (29%), Gaps = 19/155 (12%)
Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 688
C + G +C+ I G+ C+C Y C EC
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--DGRTCQDVNECAE----------- 49
Query: 689 PCPGSCGQGAQCRVINHSPVCYCPDGFIGDA-FSSCYPKPIEPIQAPEQQADPCICAPNA 747
G C Q C + C+C G+ SC EP+ + D P+
Sbjct: 50 --EGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR 105
Query: 748 VCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNK 782
+ L + + R E V SD ++
Sbjct: 106 SEYTLLLNNLENAIALDFH-HRRELVFWSDVTLDR 139
Score = 37.4 bits (86), Expect = 0.020
Identities = 22/146 (15%), Positives = 34/146 (23%), Gaps = 7/146 (4%)
Query: 791 NPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQ 850
C G C +I +V C+C G + + + E C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ-------G 56
Query: 851 CREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRV 910
C C C Y P + L ++ + V P N
Sbjct: 57 CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 116
Query: 911 INHSPICTCRPGFTGEPRIRCSPIPR 936
+ R + I R
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRILR 142
Score = 35.5 bits (81), Expect = 0.084
Identities = 20/134 (14%), Positives = 27/134 (20%), Gaps = 7/134 (5%)
Query: 89 NPCVPGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQ 148
C G C ++ AV CTC G + + NE C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ-------G 56
Query: 149 CREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARCQV 208
C C C Y P + L + + V P
Sbjct: 57 CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 116
Query: 209 YNHNPVCSCPPGYT 222
Sbjct: 117 NAIALDFHHRRELV 130
Score = 35.5 bits (81), Expect = 0.085
Identities = 25/144 (17%), Positives = 32/144 (22%), Gaps = 7/144 (4%)
Query: 473 NPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQ 532
C G C +I AV CTC G + + NE C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ-------G 56
Query: 533 CREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCPGTCGQNANCRV 592
C C C Y P + L + + V P N
Sbjct: 57 CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 116
Query: 593 INHNPSCTCKAGFTGDPRVFCSRI 616
+ V RI
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRI 140
Score = 35.5 bits (81), Expect = 0.088
Identities = 19/138 (13%), Positives = 32/138 (23%), Gaps = 17/138 (12%)
Query: 135 TNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVD 194
C + G +C+ I C+C Y + C ++C + C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLT--EDGRTCQDVNECAEEGYCSQG---- 56
Query: 195 PCPGSCGYRARCQVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSN 254
C C C GY P + P P
Sbjct: 57 -----------CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR 105
Query: 255 ARCRVQNEHALCECLPDY 272
+ + + D+
Sbjct: 106 SEYTLLLNNLENAIALDF 123
Score = 34.4 bits (78), Expect = 0.18
Identities = 24/141 (17%), Positives = 38/141 (26%), Gaps = 17/141 (12%)
Query: 837 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVD 896
C + G +C+ + C+C Y + C C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--------DGRTCQDVNECAE----- 49
Query: 897 PCPGSCGQNANCRVINHSPICTCRPGFTGEPRIRCSPIPRKLFVPADQASQENLESDVHQ 956
G C Q C + C C G+ P R V + + H+
Sbjct: 50 --EGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR 105
Query: 957 YHHLRLLSHHRNQSIHAIHHH 977
+ LL++ N HH
Sbjct: 106 SEYTLLLNNLENAIALDFHHR 126
Score = 30.9 bits (69), Expect = 2.1
Identities = 27/161 (16%), Positives = 42/161 (26%), Gaps = 24/161 (14%)
Query: 519 TNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVD 578
C + G +C+ + C+C Y + C C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--------DGRTCQDVNECAE----- 49
Query: 579 PCPGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCG 638
G C Q C C C+AG+ P + PE V
Sbjct: 50 --EGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRS-------CKALGPEPVLLFANRIDI 98
Query: 639 PYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDK 679
+ + L N I + R E V ++ D+
Sbjct: 99 RQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDR 139
Score = 29.7 bits (66), Expect = 5.5
Identities = 11/72 (15%), Positives = 18/72 (25%), Gaps = 3/72 (4%)
Query: 241 TPTDPCFPSPCGSNARCRVQNEHALCECLPDYYGNPYEGC---RPECLINSDCPLSLACI 297
T + C + G +C++ C C Y EC C
Sbjct: 1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNS 60
Query: 298 KNHCRDPCPGTC 309
+ + C
Sbjct: 61 EGAFQCWCEAGY 72
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 39.1 bits (90), Expect = 0.008
Identities = 33/196 (16%), Positives = 52/196 (26%), Gaps = 11/196 (5%)
Query: 740 PCICAPNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPCVPGTCG 799
P C V ++ C+ C + C ++ C + G C
Sbjct: 160 PGTAKGKTNCPATVINGQFVERCWTHSHCQKVC--PTICKSHGCTAEGLCCHSECLGNCS 217
Query: 800 EG------AICDVINHSVVC--SCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQC 851
+ C C +CPP +C + C+ S Q
Sbjct: 218 QPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQY 277
Query: 852 REVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVI 911
N + + C Y + N + CP + + S + C VI
Sbjct: 278 VIHNNKCIPECPSGYTMNSSNLLCTPCLG-PCPKVCHLLEGEKTIDSVTSAQELRGCTVI 336
Query: 912 NHSPICTCRPGFTGEP 927
N S I R G
Sbjct: 337 NGSLIINIRGGNNLAA 352
Score = 34.8 bits (79), Expect = 0.14
Identities = 29/213 (13%), Positives = 51/213 (23%), Gaps = 9/213 (4%)
Query: 405 SSEYIQVYTVQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVQNSDCPRNK 464
+I + D C + V + + + V + C +
Sbjct: 141 EDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHG 200
Query: 465 ACIRNKCKNPCVPGTCGEG------AICDVINHAVMC--TCPPGTTGSPFIQCKPVQNEP 516
C + G C + C C TCPP +C
Sbjct: 201 CTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQ 260
Query: 517 VYTNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKC 576
+ C+ S Q + + + C Y + N CP +
Sbjct: 261 DLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTP-CLGPCPKVCHLLEGEK 319
Query: 577 VDPCPGTCGQNANCRVINHNPSCTCKAGFTGDP 609
+ + C VIN + + G
Sbjct: 320 TIDSVTSAQELRGCTVINGSLIINIRGGNNLAA 352
Score = 29.8 bits (66), Expect = 5.0
Identities = 28/231 (12%), Positives = 46/231 (19%), Gaps = 32/231 (13%)
Query: 513 QNEPVYTNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACF 572
+++ P + C P + C + C
Sbjct: 149 KDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCC 208
Query: 573 NQKCVDPC--PGTCGQNANCRVINHNPSC--TCKAGFTGDPRVFCSRIPPPPPQESPPEY 628
+ +C+ C P + CR + C TC + C
Sbjct: 209 HSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCV-------------- 254
Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 688
+ Y+ C PEC + C
Sbjct: 255 -------NFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGY-TMNSSNLLCTPCLG 306
Query: 689 PCPGSCGQGAQCRVI------NHSPVCYCPDGFIGDAFSSCYPKPIEPIQA 733
PCP C + I C +G + E
Sbjct: 307 PCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEAN 357
Score = 29.4 bits (65), Expect = 7.0
Identities = 28/163 (17%), Positives = 40/163 (24%), Gaps = 8/163 (4%)
Query: 75 DCPSNKACIRNKCKNPCV----PGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQN 130
D + + NK N PGT C T C I
Sbjct: 138 DSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICK 197
Query: 131 EPVYTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSP---PGCRPECTVNSDCPLDRAC 187
T C + + C N++ C P D
Sbjct: 198 SHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFS 257
Query: 188 QNQKCVDPCPGSCGYR-ARCQVYNHNPVCSCPPGYTGNPFSQC 229
Q C S + ++N+ + CP GYT N +
Sbjct: 258 FCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLL 300
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.009
Identities = 18/109 (16%), Positives = 29/109 (26%), Gaps = 38/109 (34%)
Query: 918 TCRPGFT---GEPRIRCS-PIPRKLFVPADQ----------------ASQENLESDVHQY 957
+ RP T G + +P F A Q A+ + +
Sbjct: 5 STRP-LTLSHGS--LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA--- 58
Query: 958 HHL--RLLSH--HRNQSIHAIHHHAVLTLSV---ETS----TAIHHVLA 995
L + L + + VL L + E IH + A
Sbjct: 59 -ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 38.8 bits (89), Expect = 0.010
Identities = 29/201 (14%), Positives = 52/201 (25%), Gaps = 3/201 (1%)
Query: 402 DILSSEYIQVYTVQPVIQEDTC-NCVPNAECRDGVCVCLPDYYGDGYVSCRPECVQNSDC 460
DI+SS+++ ++ +C C P+ + + C +C
Sbjct: 142 DIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRG 201
Query: 461 PRNKACIRNKCKNPCVPGTCGEGAICDVINHAVMC--TCPPGTTGSPFIQCKPVQNEPVY 518
C N+C C + +C C TCPP +P V E Y
Sbjct: 202 KSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKY 261
Query: 519 TNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVD 578
+ P + H V +C + + + +C
Sbjct: 262 SFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEF 321
Query: 579 PCPGTCGQNANCRVINHNPSC 599
+ N
Sbjct: 322 KDSLSINATNIKHFKNCTSIS 342
Score = 36.1 bits (82), Expect = 0.055
Identities = 24/177 (13%), Positives = 43/177 (24%), Gaps = 2/177 (1%)
Query: 743 CAPNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPCVPGTCGEGA 802
C P+ + +C +C + C N+C C +
Sbjct: 166 CDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCL 225
Query: 803 ICDVINHSVVC--SCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCREVNKQAVC 860
+C C +CPP +P V E Y+ P + + V
Sbjct: 226 VCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVR 285
Query: 861 SCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPIC 917
+C + + + +C S N + I
Sbjct: 286 ACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 34.5 bits (78), Expect = 0.19
Identities = 26/195 (13%), Positives = 48/195 (24%), Gaps = 5/195 (2%)
Query: 26 CVNSVPPPVQQDTCNCVP-NAVCKDEVCVCLPDFYGDGYVS--CRPECVLNSDCPSNKAC 82
++++ Q +C + C + C + C +C S C
Sbjct: 148 FLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDC 207
Query: 83 IRNKCKNPCVPGTCGEGAICDVVNHAVMC--TCPPGTTGSPFIQCKPIQNEPVYTNPCQP 140
N+C C + +C C TCPP +P + E Y+
Sbjct: 208 CHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATC 267
Query: 141 SPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSC 200
P + + V +C + + +C S
Sbjct: 268 VKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSI 327
Query: 201 GYRARCQVYNHNPVC 215
N +
Sbjct: 328 NATNIKHFKNCTSIS 342
Score = 31.4 bits (70), Expect = 1.7
Identities = 23/186 (12%), Positives = 39/186 (20%), Gaps = 19/186 (10%)
Query: 519 TNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKAC------- 571
C + + ++ CS C +C P + C
Sbjct: 172 NGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFR 231
Query: 572 FNQKCVDPCPGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNP 631
C D CP N ++ NP F + P+
Sbjct: 232 DEATCKDTCPPLMLYNPTTYQMDVNPEGKYS---------FGATCVKKCPRNYVVTDHGS 282
Query: 632 CIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCP 691
C+ + + + C C + + N K C
Sbjct: 283 CVRACGADSYEMEEDG---VRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCT 339
Query: 692 GSCGQG 697
G
Sbjct: 340 SISGDL 345
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 37.8 bits (88), Expect = 0.013
Identities = 21/86 (24%), Positives = 28/86 (32%), Gaps = 18/86 (20%)
Query: 630 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDP 689
+PCI PC C+D +C+C P Y G+ NC +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NC--------------ELAKNECHPE 49
Query: 690 CPGSCGQGAQCRVINHSPVCYCPDGF 715
C C S C C G+
Sbjct: 50 RTDGCQHF--CLPGQESYTCSCAQGY 73
Score = 36.6 bits (85), Expect = 0.034
Identities = 20/118 (16%), Positives = 29/118 (24%), Gaps = 18/118 (15%)
Query: 520 NPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDP 579
+PC PC N C++ C+C P Y GS NC +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NC--------------ELAKNECHPE 49
Query: 580 CPGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPC 637
C C + +C+C G+
Sbjct: 50 RTDGCQH--FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDL 105
Score = 35.5 bits (82), Expect = 0.082
Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 18/94 (19%)
Query: 838 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDP 897
+PC PC N C++ C+C P Y GS NC +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NC--------------ELAKNECHPE 49
Query: 898 CPGSCGQNANCRVINHSPICTCRPGFTGEPRIRC 931
C C S C+C G+ +
Sbjct: 50 RTDGCQH--FCLPGQESYTCSCAQGYRLGEDHKQ 81
Score = 35.1 bits (81), Expect = 0.10
Identities = 21/100 (21%), Positives = 28/100 (28%), Gaps = 17/100 (17%)
Query: 578 DPCPGT-CGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSP 636
PC C N +C+ +CTC G+ G C N C P
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS---NCELA------------KNECHPER 50
Query: 637 CGPYSQ-CRDINGSPSCSCLPNYIGAPPNCRPECVQNTEC 675
C S +CSC Y + + C
Sbjct: 51 TDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 34.7 bits (80), Expect = 0.14
Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 10/94 (10%)
Query: 791 NPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQ 850
+PC+ C C C+C PG GS C+ + N C P
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS---NCE------LAKNECHPERTDGCQH 56
Query: 851 -CREVNKQAVCSCLPNYFGSPPNCRPECTVNTDC 883
C + CSC Y + + C
Sbjct: 57 FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 34.3 bits (79), Expect = 0.17
Identities = 23/128 (17%), Positives = 32/128 (25%), Gaps = 14/128 (10%)
Query: 89 NPCVPGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQ 148
+PC+ C C CTC PG GS C+ + N C P
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS---NCE------LAKNECHPERTDGCQH 56
Query: 149 -CREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARCQ 207
C CSC Y + C + P ++ +
Sbjct: 57 FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACG----VLTSEKRAPDLQDLPWQVKLT 112
Query: 208 VYNHNPVC 215
C
Sbjct: 113 NSEGKDFC 120
Score = 33.9 bits (78), Expect = 0.20
Identities = 21/94 (22%), Positives = 28/94 (29%), Gaps = 10/94 (10%)
Query: 473 NPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQ 532
+PC+ C C CTC PG GS C+ + N C P
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS---NCE------LAKNECHPERTDGCQH 56
Query: 533 -CREVHKQAVCSCLPNYFGSPPNCRPECTVNSDC 565
C + CSC Y + + C
Sbjct: 57 FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 33.5 bits (77), Expect = 0.27
Identities = 24/90 (26%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 136 NPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDP 195
+PC PC N C++ C+C P Y GS C E N P C+
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NC--ELAKNECHPERTDGCQHFCLPG 61
Query: 196 -----CPGSCGYRARCQVYNHNPVCSCPPG 220
C + GYR P C G
Sbjct: 62 QESYTCSCAQGYRLGEDHKQCVPHDQCACG 91
Score = 32.0 bits (73), Expect = 1.0
Identities = 21/114 (18%), Positives = 26/114 (22%), Gaps = 19/114 (16%)
Query: 244 DPCFPSPCGSNARCRVQNEHALCECLPDYYGNPYEGCRPECLINSDCPLSLACIKNHCRD 303
PC PC N C+ C C P Y G+ E KN C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCE-----------------LAKNECHP 48
Query: 304 PCPGTCGVQAICSVSNHIPICYCPAGFTGDAFRQCSPIPQREPEYRDPCSTTQC 357
C Q C C C G+ + +
Sbjct: 49 ERTDGC--QHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAP 100
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 38.3 bits (89), Expect = 0.015
Identities = 37/189 (19%), Positives = 62/189 (32%), Gaps = 12/189 (6%)
Query: 72 LNSDCPSNKACIRNKCKNPCVPGTCGEGAIC-DVVNHAVMCTCPPGTTG-SPFIQCKPIQ 129
L S SN ACIR+ N + + + D +CT PG + F Q P +
Sbjct: 190 LKSCALSNLACIRDIFPNTVFADSNIDSVMAPDAFVCGRICTHHPGCLFFTFFSQEWPKE 249
Query: 130 NEPVYTNPC--QPSPCG-PNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRA 186
++ N C + S G P+++ ++ + S P C ++D +
Sbjct: 250 SQR---NLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEEL 306
Query: 187 -CQNQKCVDPCPGSCGYRARCQVYNHNP---VCSCPPGYTGNPFSQCLLPPTPTPTQATP 242
K + C C RCQ + + P C+ G S P +
Sbjct: 307 DIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGI 366
Query: 243 TDPCFPSPC 251
+
Sbjct: 367 SGYTLRLCK 375
Score = 31.7 bits (72), Expect = 1.5
Identities = 17/125 (13%), Positives = 30/125 (24%), Gaps = 16/125 (12%)
Query: 229 CLLPPTPTPTQATPTDPCFPSPCGSNARCRVQNEHALCECLPDYYGNPYEGCRPECLINS 288
CLL T P+ S S + C +Y + ++ +
Sbjct: 255 CLLK---TSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAA 311
Query: 289 --------DCPLSLACIKN-----HCRDPCPGTCGVQAICSVSNHIPICYCPAGFTGDAF 335
C ++ C + S + I + G +G
Sbjct: 312 KSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTL 371
Query: 336 RQCSP 340
R C
Sbjct: 372 RLCKM 376
Score = 30.2 bits (68), Expect = 4.4
Identities = 10/130 (7%), Positives = 25/130 (19%), Gaps = 14/130 (10%)
Query: 521 PCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPC 580
+ S + C +++ E K + C
Sbjct: 268 RIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELD----------IVAAKSHEAC 317
Query: 581 PGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPY 640
C C+ + T + + C + + I
Sbjct: 318 QKLCTNAVRCQFFTY----TPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRL 373
Query: 641 SQCRDINGSP 650
+ + +
Sbjct: 374 CKMDNECTTK 383
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 38.3 bits (88), Expect = 0.015
Identities = 57/421 (13%), Positives = 100/421 (23%), Gaps = 41/421 (9%)
Query: 427 PNAECRDGVCVCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCVPGTCGEGAIC 486
P A + Y + C+ N+ P +C C GT GE
Sbjct: 477 PCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPT---LSGTECLCVCQSGTYGENCEK 533
Query: 487 DVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREVHKQAVCSCLP 546
++ S + C P+P +C +Q
Sbjct: 534 QSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFS 593
Query: 547 NYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCP---GTCGQNANCRVINHNPSCTCKA 603
+ C + + L + + C P P G ++ + +C
Sbjct: 594 IMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLT 653
Query: 604 GFT--GDPRVFCS-----RIPPP---PPQESPPEYVNPCIPSPCGPYSQCRD-------- 645
GF G C R + P +P + +
Sbjct: 654 GFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELTCPK 713
Query: 646 ---INGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRV 702
+ G +C N P + C ++T C G G++C
Sbjct: 714 GFVVAGPSRYTCQGNSWTPPISNSLTCEKDTLTKLKGHC--------QLGQKQSGSEC-- 763
Query: 703 INHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDNVCVCLPDYYG 762
I SP C A + A+ C+ ++ C
Sbjct: 764 ICMSPEEDCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHFL-HIGSCQDGRQL 822
Query: 763 DGYTVCRPECVRNS---DCANNKACIRNKCKNPCVPGTCGEGAICDVINHSVVCSCPPGT 819
+ ++ C + KC C C + + C +
Sbjct: 823 EWGLERTRLSSNSTKKESCGYDTCYDWEKCSASTSKCVCLLPPQCFKGGNQLYCVKMGSS 882
Query: 820 T 820
T
Sbjct: 883 T 883
Score = 37.9 bits (87), Expect = 0.017
Identities = 50/419 (11%), Positives = 92/419 (21%), Gaps = 26/419 (6%)
Query: 452 PECVQNSDCPRNKACIRNKCKNPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKP 511
P + P C A+ + C C P
Sbjct: 459 PAVIDFELAPIVDLVRNIPCAVTK--RNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGT 516
Query: 512 VQNEPVYTNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKAC 571
+ + + + C ++ + T + P +
Sbjct: 517 ECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQ-R 575
Query: 572 FNQKCVDPCPGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNP 631
++C + N P P P N
Sbjct: 576 GGKRCEGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQ---PVPPENG 632
Query: 632 CIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCP 691
I + Y D+ SCL + T D C +C P
Sbjct: 633 FIRNEKQLYLVGEDV----EISCLTGFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVV 688
Query: 692 GSCGQGAQCR---VINHSPVCYCPDGFI--GDAFSSCYPKPIEPIQAPEQQADPCICAPN 746
+ I S CP GF+ G + +C P ++ C +
Sbjct: 689 QEVLTITPFQRLYRIGESIELTCPKGFVVAGPSRYTCQGNSWTP-----PISNSLTCEKD 743
Query: 747 AVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPCVPGT-----CGEG 801
+ + L +C S + + C+ + N +
Sbjct: 744 TLTKLKGHCQLGQKQSGSECICMSPEEDCSHHSED-LCVFDTDSNDYFTSPACKFLAEKC 802
Query: 802 AICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCREVNKQAVC 860
++ + SC G ++ + C C +C + VC
Sbjct: 803 LNNQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESCGYDTCYDWEKCSASTSKCVC 861
Score = 36.8 bits (84), Expect = 0.044
Identities = 28/178 (15%), Positives = 46/178 (25%), Gaps = 6/178 (3%)
Query: 762 GDGYTVCRPECVRNSDCANNKACIR-NKCKNPCVPGTCGEGAICDVINHSVVCSCPPGTT 820
Y C N + + +C C GT GE ++
Sbjct: 490 LQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGC 549
Query: 821 GSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVN 880
S + C + P+P +C +Q + C +
Sbjct: 550 WSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSIMENNGQPCINDDEEM 609
Query: 881 TDCPLDKACVNQKCVDPCP---GSCGQNANCRVINHSPICTCRPGFT--GEPRIRCSP 933
+ L + + C P P G ++ +C GF G RC P
Sbjct: 610 KEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLTGFETVGYQYFRCLP 667
Score = 36.4 bits (83), Expect = 0.054
Identities = 34/220 (15%), Positives = 55/220 (25%), Gaps = 8/220 (3%)
Query: 43 PNAVCKDEVCVCLPDFYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAIC 102
P AV K Y + C+ N+ P+ +C C GT GE
Sbjct: 477 PCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPT---LSGTECLCVCQSGTYGENCEK 533
Query: 103 DVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQCREINHQAVCSCLP 162
++ S + C P+P +C Q
Sbjct: 534 QSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFS 593
Query: 163 NYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGY---RARCQVYNHNPVCSCPP 219
+ C + + L + C P P G+ + + + SC
Sbjct: 594 IMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLT 653
Query: 220 GYT--GNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARC 257
G+ G + +CL T P
Sbjct: 654 GFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLT 693
Score = 31.0 bits (69), Expect = 2.5
Identities = 49/378 (12%), Positives = 90/378 (23%), Gaps = 48/378 (12%)
Query: 598 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPN 657
+ C+ +++ EY P C P S +
Sbjct: 463 DFELAPIVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVC 522
Query: 658 YIGAP-PNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVC---YCPD 713
G NC + D C + + N +P C
Sbjct: 523 QSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEG 582
Query: 714 GFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDNVC------------------- 754
+ + + + D+ C
Sbjct: 583 EKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYL 642
Query: 755 -------VCLPDYYGDGYTVCRPECVRN-SDCANNKACIRNKCKNPCVPGTCGEGAICDV 806
CL + GY R C+ + + + C R +C P V +
Sbjct: 643 VGEDVEISCLTGFETVGYQYFR--CLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRL 700
Query: 807 --INHSVVCSCPPGTT--GSPFIQCK-----PVIQEPVYTNPCQPSPCGPNSQCREVNKQ 857
I S+ +CP G G C+ P I + + + Q +
Sbjct: 701 YRIGESIELTCPKGFVVAGPSRYTCQGNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSG 760
Query: 858 AVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPIC 917
+ C C+ P C D + C + N + ++ I
Sbjct: 761 SECICMS------PEEDCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHFLHIG 814
Query: 918 TCRPGFTGEPRIRCSPIP 935
+C+ G E + + +
Sbjct: 815 SCQDGRQLEWGLERTRLS 832
>1oig_A Dumpy, CG33196-PB; structural protein; NMR {Drosophila
melanogaster} SCOP: g.3.18.1
Length = 26
Score = 33.2 bits (75), Expect = 0.015
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 67 RPECVLNSDCPSNKACIRNKCKNP 90
RPECVLNSDCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 31.3 bits (70), Expect = 0.063
Identities = 16/24 (66%), Positives = 22/24 (91%)
Query: 666 RPECVQNTECPYDKACINEKCRDP 689
RPECV N++CP ++AC+N+KCRDP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 31.3 bits (70), Expect = 0.074
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 874 RPECTVNTDCPLDKACVNQKCVDP 897
RPEC +N+DCP ++ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 30.9 bits (69), Expect = 0.11
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 556 RPECTVNSDCPLDKACFNQKCVDP 579
RPEC +NSDCP ++AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 30.5 bits (68), Expect = 0.14
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 451 RPECVQNSDCPRNKACIRNKCKNP 474
RPECV NSDCP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 30.5 bits (68), Expect = 0.16
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 172 RPECTVNSDCPLDRACQNQKCVDP 195
RPEC +NSDCP ++AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.0 bits (64), Expect = 0.53
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 281 RPECLINSDCPLSLACIKNHCRDP 304
RPEC++NSDCP + AC+ CRDP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.0 bits (64), Expect = 0.56
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 769 RPECVRNSDCANNKACIRNKCKNP 792
RPECV NSDC +N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 38.3 bits (88), Expect = 0.016
Identities = 14/110 (12%), Positives = 26/110 (23%), Gaps = 9/110 (8%)
Query: 754 CVCLPDYYGDGYTVCRPECVRNSDCANNKACIRN-KCKNPCVPGTCGEGAICDVINHSVV 812
+ V+ D N + G C G +C V++ V
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 813 CSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCREVNKQAVCSC 862
C C + G C ++++ + S
Sbjct: 213 CDCSRTGFRGKDCSQ--------GKEEYIATFKGSEYFCYDLSQNPIQSS 254
Score = 36.7 bits (84), Expect = 0.051
Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 9/110 (8%)
Query: 436 CVCLPDYYGDGYVSCRPECVQNSDCPRNKACIRN-KCKNPCVPGTCGEGAICDVINHAVM 494
+ + V+ D P N + G C G +C V++ +
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 495 CTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREVHKQAVCSC 544
C C + G C ++ + + S
Sbjct: 213 CDCSRTGFRGKDCSQ--------GKEEYIATFKGSEYFCYDLSQNPIQSS 254
Score = 36.0 bits (82), Expect = 0.078
Identities = 15/110 (13%), Positives = 26/110 (23%), Gaps = 9/110 (8%)
Query: 52 CVCLPDFYGDGYVSCRPECVLNSDCPSNKACIRN-KCKNPCVPGTCGEGAICDVVNHAVM 110
+ + V D P N + G C G +C VV+ +
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 111 CTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQCREINHQAVCSC 160
C C + G C +++ + S
Sbjct: 213 CDCSRTGFRGKDCSQ--------GKEEYIATFKGSEYFCYDLSQNPIQSS 254
Score = 35.6 bits (81), Expect = 0.10
Identities = 28/226 (12%), Positives = 55/226 (24%), Gaps = 10/226 (4%)
Query: 238 TQATPTDPCFPSPCGSNARCRVQNEHALCECLPDYYGNP-YEGCRPECLINSDCPLSLAC 296
PC +PC +N CR +C+C Y E + + +
Sbjct: 614 CSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQL 673
Query: 297 IKNHCRDPCPGTCGVQAICSVSNHIPICYCPAGFTGDAFRQCSPIPQREPEYRDPCSTTQ 356
+ + + S + + + + D R + +
Sbjct: 674 PVVMHTEAEDVSLRFR---SQRAYGILMATTSRDSADTLRL--ELDAGRVKLTVNLGKGP 728
Query: 357 CGLNAICTVINGAAQCACLLLLQHHIHKNQDMDQYISLGYMLCHMDILSSEYIQVYTVQP 416
L A + + ++ + D DQ G M L E+ + T
Sbjct: 729 ETLFAGYNLNDNEWHTVRVVRRGKSLKLTVD-DQQAMTGQMAGDHTRL--EFHNIETGII 785
Query: 417 VIQEDTCNCVPN-AECRDGVCVCLPDYYGDGYVSCRPECVQNSDCP 461
+ + N + Y C N+
Sbjct: 786 TERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFG 831
Score = 34.8 bits (79), Expect = 0.18
Identities = 12/85 (14%), Positives = 23/85 (27%)
Query: 215 CSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARCRVQNEHALCECLPDYYG 274
P +G P + + + C + C V ++ A+C+C +
Sbjct: 162 SLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFR 221
Query: 275 NPYEGCRPECLINSDCPLSLACIKN 299
E I + C
Sbjct: 222 GKDCSQGKEEYIATFKGSEYFCYDL 246
Score = 33.7 bits (76), Expect = 0.35
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 3/95 (3%)
Query: 483 GAICDVI--NHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREVHKQA 540
G I DV + + + + C C V QA
Sbjct: 152 GWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQA 211
Query: 541 VCSC-LPNYFGSPPNCRPECTVNSDCPLDKACFNQ 574
VC C + G + E + + + C++
Sbjct: 212 VCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDL 246
Score = 33.7 bits (76), Expect = 0.40
Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 3/92 (3%)
Query: 99 GAICDVV--NHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQCREINHQA 156
G I DV + + + + C C ++ QA
Sbjct: 152 GWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQA 211
Query: 157 VCSC-LPNYFGSPPGCRPECTVNSDCPLDRAC 187
VC C + G E + + + C
Sbjct: 212 VCDCSRTGFRGKDCSQGKEEYIATFKGSEYFC 243
Score = 32.5 bits (73), Expect = 0.80
Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 3/95 (3%)
Query: 801 GAICDV-INHSVVCSCPPGTTG-SPFIQCKPVIQEPVYTNPCQPSPCGPNSQCREVNKQA 858
G I DV + S+ G + C C V+ QA
Sbjct: 152 GWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQA 211
Query: 859 VCSC-LPNYFGSPPNCRPECTVNTDCPLDKACVNQ 892
VC C + G + E + T + C +
Sbjct: 212 VCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDL 246
Score = 32.5 bits (73), Expect = 0.99
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 516 PVYTNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPEC 559
+ CQ C C + C C F P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 32.1 bits (72), Expect = 1.3
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 132 PVYTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPEC 175
+ CQ C C + C C F P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 31.7 bits (71), Expect = 1.4
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 834 PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPEC 877
+ CQ C C + C C F P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 31.7 bits (71), Expect = 1.5
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 512 VQNEPVYTNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVN 562
PC +PC N CR+ + VC C +C E TV
Sbjct: 612 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDC-SGTGYLGRSCEREATVL 661
Score = 31.7 bits (71), Expect = 1.6
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Query: 129 QNEPVYTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSP--PGCRPECTVNSDCPLDRA 186
PC +PC N CR+ ++ VC C + + + +
Sbjct: 613 SCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQ 672
Query: 187 CQNQKCVDPCPGSCGYRAR 205
+ S +R++
Sbjct: 673 LPVVMHTEAEDVSLRFRSQ 691
Score = 31.4 bits (70), Expect = 2.1
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 169 PGCRPECTVNSDCPLDRACQNQKCVDPC-PGSCGYRARCQVYNHNPVCSCP-PGYTGNPF 226
P E ++ + P + + G C C V + VC C G+ G
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 227 SQCLLPPTPTPTQ 239
SQ T
Sbjct: 226 SQGKEEYIATFKG 238
Score = 31.0 bits (69), Expect = 2.4
Identities = 17/104 (16%), Positives = 24/104 (23%), Gaps = 17/104 (16%)
Query: 582 GTCGQNANCRVINHNPSCTCKAGFTGDPR----------------VFCSRIPPPPPQESP 625
G + + S + F G R V PP SP
Sbjct: 127 GLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSP 186
Query: 626 PEYVNPCIPSPCGPYSQCRDINGSPSCSC-LPNYIGAPPNCRPE 668
E C C ++ C C + G + E
Sbjct: 187 CEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKE 230
Score = 30.6 bits (68), Expect = 3.1
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 242 PTDPCFPSPCGSNARCRVQNEHALCECLPDYYGNPYE 278
P+ C C + C Q + C+C + P
Sbjct: 1016 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLC 1052
Score = 30.6 bits (68), Expect = 3.2
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 836 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVN 880
PC +PC N CR+ + VC C +C E TV
Sbjct: 618 TAKPCLSNPCKNNGMCRDGWNRYVCDC-SGTGYLGRSCEREATVL 661
Score = 30.2 bits (67), Expect = 4.3
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 625 PPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPEC 669
E PC+ +PC CRD C C +C E
Sbjct: 615 SRETAKPCLSNPCKNNGMCRDGWNRYVCDC-SGTGYLGRSCEREA 658
Score = 30.2 bits (67), Expect = 4.5
Identities = 8/44 (18%), Positives = 8/44 (18%)
Query: 626 PEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPEC 669
C C C SC C P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 29.8 bits (66), Expect = 5.4
Identities = 13/68 (19%), Positives = 21/68 (30%)
Query: 756 CLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPCVPGTCGEGAICDVINHSVVCSC 815
C+ D + DG + + A K + PC+ C +C + VC C
Sbjct: 585 CIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDC 644
Query: 816 PPGTTGSP 823
Sbjct: 645 SGTGYLGR 652
Score = 29.8 bits (66), Expect = 6.5
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 871 PNCRPECTVNTDCPLDKACVNQKCVDPC-PGSCGQNANCRVINHSPICTCR-PGFTGEP 927
P E ++ + P + + G C C V++ +C C GF G+
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKD 224
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 35.5 bits (82), Expect = 0.029
Identities = 32/147 (21%), Positives = 43/147 (29%), Gaps = 33/147 (22%)
Query: 90 PCVPGTCGEGAIC--DVVNHAVMCTCPPGTTGS---PFIQCKPIQNEPVYTNPCQPSPCG 144
C P C G IC + + + C CP G T ++ + EP PC P+PC
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 145 PNSQCREINHQAV-------CSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCP 197
C C C + G C N ++ C
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNG------IHCQHN--------------INECE 101
Query: 198 GS-CGYRARCQVYNHNPVCSCPPGYTG 223
C C N C CP + G
Sbjct: 102 VEPCKNGGICTDLVANYSCECPGEFMG 128
Score = 35.1 bits (81), Expect = 0.040
Identities = 32/148 (21%), Positives = 43/148 (29%), Gaps = 33/148 (22%)
Query: 792 PCVPGTCGEGAIC--DVINHSVVCSCPPGTTGS---PFIQCKPVIQEPVYTNPCQPSPCG 846
C P C G IC + + S C CP G T ++ +EP PC P+PC
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 847 PNSQCREVNKQAV-------CSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCP 899
C C C + G C N ++ C
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNG------IHCQHN--------------INECE 101
Query: 900 GS-CGQNANCRVINHSPICTCRPGFTGE 926
C C + + C C F G
Sbjct: 102 VEPCKNGGICTDLVANYSCECPGEFMGR 129
Score = 32.8 bits (75), Expect = 0.24
Identities = 32/128 (25%), Positives = 42/128 (32%), Gaps = 29/128 (22%)
Query: 598 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPC-------GPYSQCRDINGSP 650
SC C GFT CS + E P PC P+PC + D
Sbjct: 24 SCECPDGFTDP---NCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGY 80
Query: 651 SCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCY 710
C C + G +C+ INE +PC G C + + C
Sbjct: 81 VCKCPRGFNG--IHCQHN-------------INECEVEPCKN----GGICTDLVANYSCE 121
Query: 711 CPDGFIGD 718
CP F+G
Sbjct: 122 CPGEFMGR 129
Score = 32.0 bits (73), Expect = 0.41
Identities = 33/148 (22%), Positives = 44/148 (29%), Gaps = 33/148 (22%)
Query: 474 PCVPGTCGEGAIC--DVINHAVMCTCPPGTTGS---PFIQCKPVQNEPVYTNPCQPSPCG 528
C P C G IC + + + C CP G T ++ + EP PC P+PC
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 529 PNSQCREVHKQAV-------CSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCP 581
C C C + G C N ++ C
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNG------IHCQHN--------------INECE 101
Query: 582 GT-CGQNANCRVINHNPSCTCKAGFTGD 608
C C + N SC C F G
Sbjct: 102 VEPCKNGGICTDLVANYSCECPGEFMGR 129
Score = 30.8 bits (70), Expect = 0.86
Identities = 28/139 (20%), Positives = 41/139 (29%), Gaps = 31/139 (22%)
Query: 41 CVPNAVCKDEV------CVCLPDFYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPG 94
C +C + C C F P C + S++ + PC P
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTD-------PNCSSVVEVASDEEEPTSA--GPCTPN 58
Query: 95 TCGEGAICDVVNHAVM-------CTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNS 147
C G C++ C CP G G C+ N C+ PC
Sbjct: 59 PCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI---HCQ------HNINECEVEPCKNGG 109
Query: 148 QCREINHQAVCSCLPNYFG 166
C ++ C C + G
Sbjct: 110 ICTDLVANYSCECPGEFMG 128
Score = 30.5 bits (69), Expect = 1.4
Identities = 30/146 (20%), Positives = 45/146 (30%), Gaps = 34/146 (23%)
Query: 739 DPCI---CAPNAVCRDNV------CVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKC 789
D C C +C + C C + P C + A+++ +
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTD-------PNCSSVVEVASDEEEPTSA- 52
Query: 790 KNPCVPGTCGEGAICDVINHSVV-------CSCPPGTTGSPFIQCKPVIQEPVYTNPCQP 842
PC P C G C++ C CP G G C+ I N C+
Sbjct: 53 -GPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI---HCQHNI------NECEV 102
Query: 843 SPCGPNSQCREVNKQAVCSCLPNYFG 868
PC C ++ C C + G
Sbjct: 103 EPCKNGGICTDLVANYSCECPGEFMG 128
Score = 30.1 bits (68), Expect = 1.6
Identities = 27/139 (19%), Positives = 40/139 (28%), Gaps = 31/139 (22%)
Query: 425 CVPNAECRDGV------CVCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCVPG 478
C C G+ C C + P C + ++ + PC P
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTD-------PNCSSVVEVASDEEEPTS--AGPCTPN 58
Query: 479 TCGEGAICDVINHAVM-------CTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNS 531
C G C++ C CP G G C+ N C+ PC
Sbjct: 59 PCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI---HCQ------HNINECEVEPCKNGG 109
Query: 532 QCREVHKQAVCSCLPNYFG 550
C ++ C C + G
Sbjct: 110 ICTDLVANYSCECPGEFMG 128
Score = 29.7 bits (67), Expect = 2.2
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 215 CSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARCRVQNEHAL-------CE 267
C CP G+T P ++ + T PC P+PC + C + + C+
Sbjct: 25 CECPDGFTD-PNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCK 83
Query: 268 CLPDYYG 274
C + G
Sbjct: 84 CPRGFNG 90
Score = 28.9 bits (65), Expect = 4.1
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 244 DPCFPSPCGSNARC--RVQNEHALCECLPDYYGNPYEGCRPECLINSDCPLSLACIKNHC 301
D C P+PC + C + + CEC + + + C N C
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 302 RDPCPGTC-GVQAICSVSNHIPICYCPAGFTGD 333
+ GTC +A + +C CP GF G
Sbjct: 61 HN--GGTCEISEAYRGDTFIGYVCKCPRGFNGI 91
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 34.9 bits (81), Expect = 0.036
Identities = 34/136 (25%), Positives = 43/136 (31%), Gaps = 36/136 (26%)
Query: 584 CGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQC 643
C C + C C G+TG C VN C+ +PC + C
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGP---RCE------------IDVNECVSNPCQNDATC 59
Query: 644 RDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGS-CGQGAQCRV 702
D G C C+P Y G +C E D C S C +C
Sbjct: 60 LDQIGEFQCICMPGYEG--VHC------------------EVNTDECASSPCLHNGRCLD 99
Query: 703 INHSPVCYCPDGFIGD 718
+ C CP GF G
Sbjct: 100 KINEFQCECPTGFTGH 115
Score = 33.7 bits (78), Expect = 0.085
Identities = 32/135 (23%), Positives = 44/135 (32%), Gaps = 30/135 (22%)
Query: 793 CVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCR 852
C C S C C G TG +C+ + N C +PC ++ C
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTGP---RCEIDV------NECVSNPCQNDATCL 60
Query: 853 EVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGS-CGQNANCRVI 911
+ + C C+P Y G C ++ D C S C N C
Sbjct: 61 DQIGEFQCICMPGYEG------------VHCEVN--------TDECASSPCLHNGRCLDK 100
Query: 912 NHSPICTCRPGFTGE 926
+ C C GFTG
Sbjct: 101 INEFQCECPTGFTGH 115
Score = 33.7 bits (78), Expect = 0.091
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 791 NPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQ 850
N CV C A C C C PG G C+ V T+ C SPC N +
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEGV---HCE------VNTDECASSPCLHNGR 96
Query: 851 CREVNKQAVCSCLPNYFGS 869
C + + C C + G
Sbjct: 97 CLDKINEFQCECPTGFTGH 115
Score = 33.3 bits (77), Expect = 0.11
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 89 NPCVPGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQ 148
N CV C A C C C PG G C+ V T+ C SPC N +
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEGV---HCE------VNTDECASSPCLHNGR 96
Query: 149 CREINHQAVCSCLPNYFGS 167
C + ++ C C + G
Sbjct: 97 CLDKINEFQCECPTGFTGH 115
Score = 33.3 bits (77), Expect = 0.12
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 473 NPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQ 532
N CV C A C C C PG G C+ V T+ C SPC N +
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEGV---HCE------VNTDECASSPCLHNGR 96
Query: 533 CREVHKQAVCSCLPNYFGS 551
C + + C C + G
Sbjct: 97 CLDKINEFQCECPTGFTGH 115
Score = 30.3 bits (69), Expect = 1.2
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 200 CGYRARCQVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARCRV 259
C + +C + C C GYTG +C + C +PC ++A C
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTG---PRC----------EIDVNECVSNPCQNDATCLD 61
Query: 260 QNEHALCECLPDYYG 274
Q C C+P Y G
Sbjct: 62 QIGEFQCICMPGYEG 76
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 36.4 bits (83), Expect = 0.041
Identities = 23/156 (14%), Positives = 34/156 (21%), Gaps = 18/156 (11%)
Query: 630 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDP 689
N C+ + G C D+ C C + C EC
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR---CEDIDECQD------------ 45
Query: 690 CPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVC 749
P +C Q C + C C +GF D +
Sbjct: 46 -PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 750 RDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACI 785
+ T + SD + C
Sbjct: 103 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICS 138
Score = 35.2 bits (80), Expect = 0.100
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 9/127 (7%)
Query: 89 NPCVPGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQ 148
N C+ G +C+ + C CP G +C+ + CQ P +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-------IDECQD-PDTCSQL 52
Query: 149 CREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARCQV 208
C + C C + P V S L +++ S +
Sbjct: 53 CVNLEGGYKCQCEEGFQLDPHTKAC-KAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNL 111
Query: 209 YNHNPVC 215
N +
Sbjct: 112 RNVVALD 118
Score = 34.8 bits (79), Expect = 0.15
Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 9/127 (7%)
Query: 791 NPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQ 850
N C+ G +C+ + C CP G +C+ + CQ P +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-------IDECQD-PDTCSQL 52
Query: 851 CREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRV 910
C + C C + P V + L ++ S + +
Sbjct: 53 CVNLEGGYKCQCEEGFQLDPHTKAC-KAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNL 111
Query: 911 INHSPIC 917
N +
Sbjct: 112 RNVVALD 118
Score = 33.3 bits (75), Expect = 0.41
Identities = 20/127 (15%), Positives = 35/127 (27%), Gaps = 9/127 (7%)
Query: 473 NPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQ 532
N C+ G +C+ + C CP G +C+ + CQ P +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-------IDECQD-PDTCSQL 52
Query: 533 CREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCPGTCGQNANCRV 592
C + C C + P V S L ++ + + +
Sbjct: 53 CVNLEGGYKCQCEEGFQLDPHTKAC-KAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNL 111
Query: 593 INHNPSC 599
N
Sbjct: 112 RNVVALD 118
Score = 32.5 bits (73), Expect = 0.70
Identities = 15/141 (10%), Positives = 28/141 (19%), Gaps = 9/141 (6%)
Query: 244 DPCFPSPCGSNARCRVQNEHALCECLPDYYGNPYEGC--RPECLINSDC-------PLSL 294
+ C + G + C C C + C EC C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 295 ACIKNHCRDPCPGTCGVQAICSVSNHIPICYCPAGFTGDAFRQCSPIPQREPEYRDPCST 354
C P T +A+ S++ + + + +
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 120
Query: 355 TQCGLNAICTVINGAAQCACL 375
+ L
Sbjct: 121 VASNRIYWSDLSQRMICSTQL 141
Score = 31.7 bits (71), Expect = 1.4
Identities = 20/136 (14%), Positives = 33/136 (24%), Gaps = 19/136 (13%)
Query: 578 DPC-PGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPC-IPS 635
+ C G + C + C C GF + C E ++ C P
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC-------------EDIDECQDPD 47
Query: 636 PCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCG 695
C C ++ G C C + P C Y + R
Sbjct: 48 TCSQ--LCVNLEGGYKCQCEEGFQLDPHTKA--CKAVGSIAYLFFTNRHEVRKMTLDRSE 103
Query: 696 QGAQCRVINHSPVCYC 711
+ + +
Sbjct: 104 YTSLIPNLRNVVALDT 119
Score = 31.0 bits (69), Expect = 2.1
Identities = 22/155 (14%), Positives = 43/155 (27%), Gaps = 18/155 (11%)
Query: 838 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDP 897
N C + G + C ++ C C + + C C +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGF---------QLVAQRRCEDIDECQD------ 45
Query: 898 CPGSCGQNANCRVINHSPICTCRPGFTGEPRIRCSPIPRKLFVPADQASQENLESDVHQY 957
P +C Q C + C C GF +P + + E + + +
Sbjct: 46 -PDTCSQL--CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 958 HHLRLLSHHRNQSIHAIHHHAVLTLSVETSTAIHH 992
+ L+ + RN + + S +
Sbjct: 103 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMIC 137
Score = 30.6 bits (68), Expect = 2.8
Identities = 18/134 (13%), Positives = 28/134 (20%), Gaps = 9/134 (6%)
Query: 688 DPC-PGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPN 746
+ C + G C + C CPDGF A C + DP C+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID--------ECQDPDTCSQL 52
Query: 747 AVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPCVPGTCGEGAICDV 806
V + C + + S K
Sbjct: 53 CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLR 112
Query: 807 INHSVVCSCPPGTT 820
++
Sbjct: 113 NVVALDTEVASNRI 126
Score = 30.2 bits (67), Expect = 3.9
Identities = 21/164 (12%), Positives = 39/164 (23%), Gaps = 22/164 (13%)
Query: 520 NPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDP 579
N C + G + C ++ C C + C C +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR---------CEDIDECQD------ 45
Query: 580 CPGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGP 639
P TC Q C + C C+ GF DP +
Sbjct: 46 -PDTCSQL--CVNLEGGYKCQCEEGFQLDP----HTKACKAVGSIAYLFFTNRHEVRKMT 98
Query: 640 YSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACIN 683
+ + P+ + + R ++ ++
Sbjct: 99 LDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 142
Score = 29.8 bits (66), Expect = 5.3
Identities = 14/112 (12%), Positives = 25/112 (22%), Gaps = 2/112 (1%)
Query: 194 DPC-PGSCGYRARCQVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCG 252
+ C + G C C CP G+ +C T + C G
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID-ECQDPDTCSQLCVNLEGG 59
Query: 253 SNARCRVQNEHALCECLPDYYGNPYEGCRPECLINSDCPLSLACIKNHCRDP 304
+C + G+ L + + +
Sbjct: 60 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNL 111
Score = 29.0 bits (64), Expect = 8.4
Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 20/144 (13%)
Query: 136 NPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDP 195
N C + G + C ++ C C + + +D
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR------------------CEDIDE 42
Query: 196 CPGSCGYRARCQVYNHNPVCSCPPGYTGNP--FSQCLLPPTPTPTQATPTDPCFPSPCGS 253
C C C C G+ +P + + + + S
Sbjct: 43 CQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 254 NARCRVQNEHALCECLPDYYGNPY 277
+ N + + N
Sbjct: 103 EYTSLIPNLRNVVALDTEVASNRI 126
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 35.8 bits (81), Expect = 0.080
Identities = 25/160 (15%), Positives = 34/160 (21%), Gaps = 15/160 (9%)
Query: 215 CSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARCRVQNEHALCECLPDYYG 274
S G + +P PT S + + LP Y
Sbjct: 455 YSVDLGLSWHPL-VRDCLPTNVECSRYHLQRILVSDTFNKW-------TRITLPLPSYTR 506
Query: 275 NPYEGCRPECLINSDCPLSLACIKNHCRDPCPGTCGVQAICSVSNHIPICYCPAGFTGDA 334
+ R D + A + D C C C + C C + G
Sbjct: 507 SQATRFRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQGS----CVCDEQWGGLY 562
Query: 335 FRQCSPIPQREPEYRDPCSTTQCGLNAICTVINGAAQCAC 374
C P TV G C
Sbjct: 563 ---CDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVC 599
Score = 34.6 bits (78), Expect = 0.22
Identities = 22/107 (20%), Positives = 24/107 (22%), Gaps = 10/107 (9%)
Query: 171 CRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARCQVYNHNPVCSCPPGYTGNPFSQCL 230
R D A N D C C RC C C + G C
Sbjct: 512 FRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRC----VQGSCVCDEQWGG---LYCD 564
Query: 231 LPPTPTPTQATPTDPCFPSPCGSNARCRVQNEHALCECLPDYYGNPY 277
P T PTQ F + V C G
Sbjct: 565 EPETSLPTQ---LKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLAL 608
Score = 33.1 bits (74), Expect = 0.63
Identities = 27/182 (14%), Positives = 37/182 (20%), Gaps = 34/182 (18%)
Query: 491 HAVMCTCPPGTTGS---PFIQCKPVQNEPVYTNPCQPSPCGPNSQCREVHKQAVCSCLPN 547
H ++ C P + +T P P SQ
Sbjct: 464 HPLVRDCLPTNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATR------------ 511
Query: 548 YFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCPGTCGQNANCRVINHNPSCTCKAGFTG 607
R D A N D C C + C SC C + G
Sbjct: 512 -------FRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCV----QGSCVCDEQWGG 560
Query: 608 DPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRP 667
+C P + + G S C G +
Sbjct: 561 L---YCDEPETSLPTQLKDNFNRAPSNQN-----WLTVSGGKLSTVCGAVASGLALHFSG 612
Query: 668 EC 669
C
Sbjct: 613 GC 614
Score = 30.8 bits (68), Expect = 2.7
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 10/109 (9%)
Query: 410 QVYTVQPVIQEDTC--NCVPNAECRDGVCVCLPDYYGDGYV-------SCRPECVQNSDC 460
Q + + V D C C + C G CVC + G + + +
Sbjct: 524 QTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPS 583
Query: 461 PRNKACIRN-KCKNPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQ 508
+N + K C G ++ T T + FIQ
Sbjct: 584 NQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVDLNLTNAEFIQ 632
Score = 30.8 bits (68), Expect = 3.2
Identities = 13/59 (22%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 179 SDCPLDRACQNQKCVDPCPGSCGYRARCQVYNHNPVCSCPPGYTGNPFSQCLLPPTPTP 237
P+ A N C C C + C C PGY+G P
Sbjct: 171 GSQPVTWAIDNVYIGPQCEEMCYGHGSC---INGTKCICDPGYSGPTCKISTKNPDFLK 226
Score = 29.6 bits (65), Expect = 7.4
Identities = 18/133 (13%), Positives = 30/133 (22%), Gaps = 15/133 (11%)
Query: 739 DPCICAPNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPCVP--- 795
+ + + + LP Y T R D A + C+
Sbjct: 483 QRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPAPFDKQQTWAIDNVYIGDGCLDMCS 542
Query: 796 --GTCGEGA----------ICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPS 843
G C +G+ CD S+ +P Q + + C
Sbjct: 543 GHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAV 602
Query: 844 PCGPNSQCREVNK 856
G
Sbjct: 603 ASGLALHFSGGCS 615
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 34.0 bits (78), Expect = 0.087
Identities = 27/152 (17%), Positives = 44/152 (28%), Gaps = 19/152 (12%)
Query: 526 PCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCPGTCG 585
C +S C C C P + D +C +CG
Sbjct: 8 WCPQDSSCVNATA---CRCNPGFSSFSEIITTPMETCDDI--------NECATLSKVSCG 56
Query: 586 QNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCI--PSPCGPYSQC 643
+ ++C + C C G+ E+ + V+ C C + C
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPV----SGAKTFKNESENTCQDVDECSSGQHQCDSSTVC 112
Query: 644 RDINGSPSCSCLPNYIGAPPNCRPECVQNTEC 675
+ GS SC C P + ++T C
Sbjct: 113 FNTVGSYSCRCRPGWKPRHGIP--NNQKDTVC 142
Score = 29.0 bits (65), Expect = 3.6
Identities = 28/145 (19%), Positives = 44/145 (30%), Gaps = 18/145 (12%)
Query: 636 PCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCG 695
C S C + +C C P + + INE C SCG
Sbjct: 8 WCPQDSSC---VNATACRCNPGFSSFSEIITTPMETCDD-------INE-CATLSKVSCG 56
Query: 696 QGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEP--IQAPEQQADPCICAPNAVCRDNV 753
+ + C S C C G+ + + + E E + C + VC + V
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTV 116
Query: 754 ----CVCLPDYYGDGYT-VCRPECV 773
C C P + + + V
Sbjct: 117 GSYSCRCRPGWKPRHGIPNNQKDTV 141
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 33.8 bits (78), Expect = 0.10
Identities = 27/171 (15%), Positives = 38/171 (22%), Gaps = 42/171 (24%)
Query: 87 CKNPCVPGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPN 146
+ C C ++ T + C SPC
Sbjct: 13 LERECKEEQCSFEEAREI------FKDAERTKLF--------WISYSDGDQCASSPCQNG 58
Query: 147 SQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARC 206
C++ +C CLP + G C + D L +N C C
Sbjct: 59 GSCKDQLQSYICFCLPAFEG------RNCETHKDDQLICVNENGGCEQYC---------S 103
Query: 207 QVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARC 257
C C GY+ P PCG
Sbjct: 104 DHTGTKRSCRCHEGYSL---LAD----------GVSCTPTVEYPCGKIPIL 141
Score = 30.4 bits (69), Expect = 1.3
Identities = 21/90 (23%), Positives = 26/90 (28%), Gaps = 15/90 (16%)
Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 688
+ C SPC C+D S C CLP + G NC C N C
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG--RNCETHKDDQLICV----NENGGCEQ 100
Query: 689 PCPGSCGQGAQCRVINHSPVCYCPDGFIGD 718
C C C +G+
Sbjct: 101 YC---------SDHTGTKRSCRCHEGYSLL 121
Score = 29.6 bits (67), Expect = 2.6
Identities = 21/114 (18%), Positives = 28/114 (24%), Gaps = 32/114 (28%)
Query: 743 CAPNAVCRDNV----CVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCK-NPCVPGT 797
C C+D + C CLP + G +C +K + G
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGR-------------NCETHK----DDQLICVNENGG 97
Query: 798 CGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQC 851
C E D C C G + P PCG
Sbjct: 98 C-EQYCSDHTGTKRSCRCHEGYSLL---ADGVSC------TPTVEYPCGKIPIL 141
Score = 28.4 bits (64), Expect = 6.4
Identities = 27/169 (15%), Positives = 39/169 (23%), Gaps = 44/169 (26%)
Query: 471 CKNPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPN 530
+ C C ++ T + C SPC
Sbjct: 13 LERECKEEQCSFEEAREI------FKDAERTKLF--------WISYSDGDQCASSPCQNG 58
Query: 531 SQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCPGTCGQNANC 590
C++ + +C CLP + G NC C N C C
Sbjct: 59 GSCKDQLQSYICFCLPAFEG--RNCETHKDDQLICV----NENGGCEQYC---------S 103
Query: 591 RVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGP 639
SC C G++ P + PCG
Sbjct: 104 DHTGTKRSCRCHEGYSLL---ADGVS------------CTPTVEYPCGK 137
Score = 28.4 bits (64), Expect = 6.8
Identities = 24/113 (21%), Positives = 29/113 (25%), Gaps = 30/113 (26%)
Query: 41 CVPNAVCKDEV----CVCLPDFYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTC 96
C CKD++ C CLP F G +C D G C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGR---NCETHK---DDQLI----------CVNENGGC 98
Query: 97 GEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQC 149
E D C C G + + V P PCG
Sbjct: 99 -EQYCSDHTGTKRSCRCHEGYSL---------LADGVSCTPTVEYPCGKIPIL 141
Score = 28.1 bits (63), Expect = 8.3
Identities = 21/113 (18%), Positives = 29/113 (25%), Gaps = 30/113 (26%)
Query: 425 CVPNAECRDGV----CVCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCVPGTC 480
C C+D + C CLP + G C + D + +N C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGR-------NCETHKD-----DQLICVNENGGCEQYC 102
Query: 481 GEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQC 533
D C C G + + V P PCG
Sbjct: 103 -----SDHTGTKRSCRCHEGYSL---------LADGVSCTPTVEYPCGKIPIL 141
Score = 28.1 bits (63), Expect = 8.4
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 15/90 (16%)
Query: 837 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVD 896
+ C SPC C++ + +C CLP + G NC C + Q C D
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG--RNCETHKDDQLICVNENGGCEQYCSD 104
Query: 897 PCPGSCGQNANCRVINHSPICTCRPGFTGE 926
C C G++
Sbjct: 105 -------------HTGTKRSCRCHEGYSLL 121
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 35.2 bits (80), Expect = 0.10
Identities = 33/216 (15%), Positives = 56/216 (25%), Gaps = 7/216 (3%)
Query: 75 DCPSNKACIRNKCKNPC---VPGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNE 131
D SN + NK C PGT E +C+ TT C +
Sbjct: 132 DAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGK 191
Query: 132 PVYTNPCQPSPCGPNSQCREINHQAVC-SCLPNYFGSPPGCRPECTVNSDCPLDRACQNQ 190
T + C ++ C +C Y+ C P C N+ C ++
Sbjct: 192 RACTENNECCHPECLGSCSAPDNDTACVACRHYYYAG--VCVPACPPNTYRFEGWRCVDR 249
Query: 191 K-CVDPCPGSCGYRARCQVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPS 249
C + +++ + CP G+ N P P +
Sbjct: 250 DFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTK 309
Query: 250 PCGSNARCRVQNEHALCECLPDYYGNPYEGCRPECL 285
S ++ + + E
Sbjct: 310 TIDSVTSAQMLQGCTIFKGNLLINIRRGNNIASELE 345
Score = 30.6 bits (68), Expect = 2.7
Identities = 28/160 (17%), Positives = 45/160 (28%), Gaps = 4/160 (2%)
Query: 766 TVCRPECVRNSDCANNKACIRNKCKNPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPFI 825
TV + K PGT E +C+ + + TT
Sbjct: 124 TVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQK 183
Query: 826 QCKPVIQEPVYTNPCQPSPCGPNSQCREVNKQAVC-SCLPNYFGSPPNCRPECTVNTDCP 884
C + T + C + C +C Y+ C P C NT
Sbjct: 184 MCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAG--VCVPACPPNTYRF 241
Query: 885 LDKACVNQKCVDPCPGSCGQNANCRVI-NHSPICTCRPGF 923
CV++ + ++ VI + + C GF
Sbjct: 242 EGWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGF 281
Score = 30.6 bits (68), Expect = 3.3
Identities = 36/225 (16%), Positives = 64/225 (28%), Gaps = 6/225 (2%)
Query: 564 DCPLDKACFNQKCVDPCPGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQE 623
D + K C C + + + + + C ++ P +
Sbjct: 132 DAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGK 191
Query: 624 SPPEYVNPCIPSPCGPYSQCRDINGSPSC-SCLPNYIGAPPNCRPECVQNTECPYDKACI 682
N C C C + +C +C Y C P C NT C+
Sbjct: 192 RACTENNECCHPEC--LGSCSAPDNDTACVACRHYYYA--GVCVPACPPNTYRFEGWRCV 247
Query: 683 NEKCRDPCPGSCGQGAQCRVI-NHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPC 741
+ + ++ VI + + CP GFI + S Y P E + +
Sbjct: 248 DRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKK 307
Query: 742 ICAPNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIR 786
++V + + G+ R S+ N I
Sbjct: 308 TKTIDSVTSAQMLQGCTIFKGNLLINIRRGNNIASELENFMGLIE 352
Score = 30.2 bits (67), Expect = 4.1
Identities = 32/193 (16%), Positives = 49/193 (25%), Gaps = 12/193 (6%)
Query: 418 IQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVQNSDCPRNKAC--IRNKCKNPC 475
I + N C L + C + N R + C + C
Sbjct: 130 ILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTC 189
Query: 476 VPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPS-------PCG 528
C E C C+ P T + C+ V C P+ C
Sbjct: 190 GKRACTENNECCHPECLGSCSAPDNDTAC--VACRHYYYAGVCVPACPPNTYRFEGWRCV 247
Query: 529 PNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCPGTCGQNA 588
C + S + C EC ++ + C PCP C +
Sbjct: 248 DRDFCANILSA-ESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEK 306
Query: 589 NCRVINHNPSCTC 601
+ I+ S
Sbjct: 307 KTKTIDSVTSAQM 319
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 35.1 bits (80), Expect = 0.12
Identities = 52/271 (19%), Positives = 71/271 (26%), Gaps = 47/271 (17%)
Query: 421 DTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCVPGTC 480
G C+C + G C P + N C C
Sbjct: 266 VDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRP-----AEGRNSNACKKCNC 320
Query: 481 GEGAICDVINHAVMC-----------TCPPGTTGSPFIQCKPVQNEPV-----YTNPCQP 524
E + + AV C T G QCKP + N C+P
Sbjct: 321 NEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEP 380
Query: 525 SPCGPN-----------SQCREVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFN 573
C P + C C + G + E + C
Sbjct: 381 CTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGC-- 438
Query: 574 QKCVDPCPGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCI 633
+ C GT C C CK TG C + P ++ C
Sbjct: 439 KSCACNPLGTIPGGNPCDSETG--YCYCKRLVTGQ---RCDQ--CLPQHWGLSNDLDGCR 491
Query: 634 PSPCGPY----SQCRDINGSPSCSCLPNYIG 660
P C + C + +G CSCLP+ IG
Sbjct: 492 PCDCDLGGALNNSCSEDSG--QCSCLPHMIG 520
Score = 34.3 bits (78), Expect = 0.22
Identities = 50/281 (17%), Positives = 65/281 (23%), Gaps = 35/281 (12%)
Query: 110 MCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPP 169
C C + + + E + C C C+ Y P
Sbjct: 253 NCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNC--------ELCMDFYHDLP- 303
Query: 170 GCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARCQVYNHNPVCSCPPGYTGNPFSQC 229
RP NS+ C + +C G QC
Sbjct: 304 -WRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGV--CDNCQHNTMGRNCEQC 360
Query: 230 LL----PPTPTPTQATPTDPCFPSPCGSNARCRVQNEHAL--------CECLPDYYGNPY 277
P +PC P GS C C G
Sbjct: 361 KPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERC 420
Query: 278 EGCRPECLINSDCPLSLACIKNHCRDPCPGTCGVQAICSVSNHIPICYCPAGFTGDAFRQ 337
+ C+ + C C GT C CYC TG Q
Sbjct: 421 DVCKE-GFYDLSAEDPYGCKSCACN--PLGTIPGGNPCDSETGY--CYCKRLVTGQRCDQ 475
Query: 338 CSPIPQREPEYRDPCSTTQC----GLNAICTVINGAAQCAC 374
C P D C C LN C+ +G QC+C
Sbjct: 476 CLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSG--QCSC 514
Score = 33.5 bits (76), Expect = 0.36
Identities = 45/222 (20%), Positives = 67/222 (30%), Gaps = 27/222 (12%)
Query: 721 SSCYPKPIEPIQAPEQQADPCICAPNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCAN 780
S C P + C+C N N +C+ Y+ RP RNS+
Sbjct: 261 SECAPVDGVNEEVEGMVHGHCMCRHN-TKGLNCELCMDFYHDL---PWRPAEGRNSNAC- 315
Query: 781 NKACIRNKCKNPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKP-----VIQEPV 835
K C N+ + C A +V + V +C T G QCKP ++
Sbjct: 316 -KKCNCNEHSSSCHFDMAVFLATGNV-SGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIR 373
Query: 836 YTNPCQPSPCGPN-----------SQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCP 884
N C+P C P + C C + G + E +
Sbjct: 374 DPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAE 433
Query: 885 LDKACVNQKCVDPCPGSCGQNANCRVINHSPICTCRPGFTGE 926
C + C G+ C C C+ TG+
Sbjct: 434 DPYGC--KSCACNPLGTIPGGNPCDSETGY--CYCKRLVTGQ 471
Score = 30.0 bits (67), Expect = 4.2
Identities = 45/322 (13%), Positives = 69/322 (21%), Gaps = 27/322 (8%)
Query: 615 RIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPN----YIGAPPNCRPECV 670
RI ++ + Y D+ +C C + N E +
Sbjct: 217 RIKFVKLHTLGDNLLDSRMEIREKYYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGM 276
Query: 671 QNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEP 730
+ C C R C + SSC+
Sbjct: 277 VHGHCMCRHNTKGLNCELCMDFYHDL--PWRPAEGRNSNACKKCNCNEHSSSCHFDMAVF 334
Query: 731 IQAPEQQADPCICAPNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCK 790
+ C + N C P Y+ R N ++
Sbjct: 335 LATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQH---PERDIRDPNLCEPCTCDPAGSENG 391
Query: 791 NPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQ 850
C T + C C G CK + +P C N
Sbjct: 392 GICDGYTDFSVG-----LIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPL 446
Query: 851 CREVNKQA------VCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSCGQ 904
C C G C +C + + C C
Sbjct: 447 GTIPGGNPCDSETGYCYCKRLVTG--QRCD-QCLPQHWGLSNDLDGCRPC--DCDLGGAL 501
Query: 905 NANCRVINHSPICTCRPGFTGE 926
N +C + C+C P G
Sbjct: 502 NNSCSEDSGQ--CSCLPHMIGR 521
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 33.6 bits (77), Expect = 0.14
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 518 YTNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNC 555
YT CQ C +C E CSC P ++G P C
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
Score = 33.6 bits (77), Expect = 0.14
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 836 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNC 873
YT CQ C +C E CSC P ++G P C
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
Score = 32.8 bits (75), Expect = 0.25
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 134 YTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDC 181
YT CQ C +C E CSC P ++G PEC D
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDD 159
Score = 29.8 bits (67), Expect = 2.4
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 628 YVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTEC 675
Y C C +C + G+ +CSC P + G PEC +
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDD 159
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 34.6 bits (79), Expect = 0.15
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 516 PVYTNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPEC 559
+ CQ C C + C C F P P
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 33.4 bits (76), Expect = 0.37
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 834 PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPEC 877
+ CQ C C + C C F P P
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 33.1 bits (75), Expect = 0.49
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 132 PVYTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPEC 175
+ CQ C C + C C F P P
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 31.9 bits (72), Expect = 1.1
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 242 PTDPCFPSPCGSNARCRVQNEHALCECLPDYYGNPY 277
P+ C C + C Q + C+C + P
Sbjct: 184 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 219
Score = 30.4 bits (68), Expect = 3.8
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 630 NPCIPSPCGPYSQCRDINGSPSCSC-LPNYIGAPPNCRPEC 669
C C C SC C + ++ G P C
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSG--PLCNDPG 224
Score = 29.2 bits (65), Expect = 8.2
Identities = 6/36 (16%), Positives = 9/36 (25%)
Query: 789 CKNPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPF 824
C +C +C C C + P
Sbjct: 184 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 219
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 33.1 bits (74), Expect = 0.30
Identities = 21/201 (10%), Positives = 37/201 (18%), Gaps = 28/201 (13%)
Query: 477 PGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQN--EPVYTNPCQPSPCGPNSQCR 534
T +++ C C G C+ C +
Sbjct: 9 VDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDP 68
Query: 535 EVHKQAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCVDPCPGTCGQNANCRVIN 594
C C+ Y C + C +
Sbjct: 69 AQVNMYXCGCIEGYTLXEDTCVLDVC---------------QYXNCGESGECIVEYLSEI 113
Query: 595 HNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSC 654
+ C+C G + P C C ++ G C C
Sbjct: 114 QSAGCSCAIGXVPN---------PEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQC 164
Query: 655 LPNYIGAPPNCRPECVQNTEC 675
+ + C+
Sbjct: 165 MEGFTFDXEXN--VCLGPHHH 183
Score = 31.9 bits (71), Expect = 0.63
Identities = 24/185 (12%), Positives = 38/185 (20%), Gaps = 24/185 (12%)
Query: 93 PGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQN--EPVYTNPCQPSPCGPNSQCR 150
T +++ C C G C+ C +
Sbjct: 9 VDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDP 68
Query: 151 EINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARCQVYN 210
+ C C+ Y C + +C C
Sbjct: 69 AQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECI---------------VEYLSEI 113
Query: 211 HNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARCRVQNEHALCECLP 270
+ CSC G N P T C N C C+C+
Sbjct: 114 QSAGCSCAIGXVPN-------PEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCME 166
Query: 271 DYYGN 275
+ +
Sbjct: 167 GFTFD 171
Score = 31.9 bits (71), Expect = 0.68
Identities = 27/192 (14%), Positives = 45/192 (23%), Gaps = 24/192 (12%)
Query: 686 CRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAP 745
+ Q +++ C C +G + + ++C +
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCI 63
Query: 746 NAVCRDNV----CVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPCVPGTCGEG 801
V C C+ Y T C + + +C + CI
Sbjct: 64 ENPDPAQVNMYXCGCIEGYTLXEDT-CVLDVCQYXNCGESGECIVE-------------- 108
Query: 802 AICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCREVNKQAVCS 861
S CSC G +P CQ N C V C
Sbjct: 109 --YLSEIQSAGCSCAIGXVPNP---EDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQ 163
Query: 862 CLPNYFGSPPNC 873
C+ +
Sbjct: 164 CMEGFTFDXEXN 175
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/119 (14%), Positives = 26/119 (21%), Gaps = 4/119 (3%)
Query: 576 CVDPCPGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPS 635
T N ++++ C C G C + C
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGX----ACGEF 59
Query: 636 PCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSC 694
+ C C+ Y C + Q C CI E + C
Sbjct: 60 GQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGC 118
Score = 28.8 bits (63), Expect = 7.0
Identities = 22/183 (12%), Positives = 34/183 (18%), Gaps = 22/183 (12%)
Query: 192 CVDPCPGSCGYRARCQVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPC 251
+ + +++ C C G + C T C
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCE--EXNECXXETLGXACGEFGQ 61
Query: 252 GSNARCRVQNEHALCECLPDYYGNPYEGCRPECLINSDCPLSLACIKNHCRDPCPGTCGV 311
Q C C+ Y C C +
Sbjct: 62 CIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVC----------------QYXNCGESGEC 105
Query: 312 QAICSVSNHIPICYCPAGFTGDAFRQCSPIPQREPEYRDPCSTTQCGLNAICTVINGAAQ 371
C C G + + E C N +C + G
Sbjct: 106 IVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGE----TACQLXCNTDNEVCXNVEGVYX 161
Query: 372 CAC 374
C C
Sbjct: 162 CQC 164
Score = 28.5 bits (62), Expect = 8.2
Identities = 13/110 (11%), Positives = 25/110 (22%), Gaps = 2/110 (1%)
Query: 795 PGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQ--EPVYTNPCQPSPCGPNSQCR 852
T +++ C C G C+ + C +
Sbjct: 9 VDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDP 68
Query: 853 EVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSC 902
C C+ Y C + +C C+ + + C
Sbjct: 69 AQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGC 118
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 33.2 bits (75), Expect = 0.37
Identities = 15/74 (20%), Positives = 21/74 (28%)
Query: 637 CGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQ 696
C +++CRD C C+ NY G C E K I
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENT 74
Query: 697 GAQCRVINHSPVCY 710
V+ + Y
Sbjct: 75 DLHSYVVMNHGRSY 88
Score = 32.0 bits (72), Expect = 0.92
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 583 TCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQ 642
C +A CR C C A +TG+ R C P + S +
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQRVNGKVKGRIFVGSSQVPVVFE 72
Query: 643 CRDINGSP 650
D++
Sbjct: 73 NTDLHSYV 80
Score = 29.0 bits (64), Expect = 7.6
Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 14/98 (14%)
Query: 33 PVQQDTC-----NCVPNAVCKDEV----CVCLPDFYGDGYVSCRPECVLNSDCPSNKACI 83
P+ Q TC C +A C+D C C+ ++ G+G C E K I
Sbjct: 2 PLAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQRVNGKVKGRI 60
Query: 84 RNKCKNPCVPGTC----GEGAICDVVNHAVMCTCPPGT 117
V + ++ + T P
Sbjct: 61 FVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETV 98
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 31.7 bits (72), Expect = 0.54
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 836 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNC 873
YT CQP C + +C E+ C+C Y+G P C
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYG--PQC 153
Score = 31.3 bits (71), Expect = 0.78
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 134 YTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGS 167
YT CQP C + +C EI + C+C Y+G
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
Score = 30.9 bits (70), Expect = 1.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 518 YTNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNC 555
YT CQP C + +C E+ C+C Y+G P C
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYG--PQC 153
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 32.9 bits (75), Expect = 0.61
Identities = 18/161 (11%), Positives = 34/161 (21%), Gaps = 40/161 (24%)
Query: 445 DGYVSCRP-ECVQNSDCPRNKACIRNKCKNPCVPGTCGEGAICDVINHAVMCTCPPGTTG 503
+ S + ++ D + N C+NP EG C
Sbjct: 37 LAWASAQAKALSKHQDFNSAVQLVENFCRNP---DGDEEG-----------VWC------ 76
Query: 504 SPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNCRPECTVNS 563
++ KP N C+ + + + R +
Sbjct: 77 --YVAGKPGDFGYCDLNYCEEAVEEETGDGLD----------------EDSDRAIEGATA 118
Query: 564 DCPLDKACFNQKCVDPCPGTCGQNANCRVINHNPSCTCKAG 604
+ FN CG + +
Sbjct: 119 TSE-YQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELL 158
Score = 31.0 bits (70), Expect = 2.0
Identities = 19/163 (11%), Positives = 34/163 (20%), Gaps = 40/163 (24%)
Query: 61 DGYVSCRP-ECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICDVVNHAVMCTCPPGTTG 119
+ S + + D S + N C+NP EG C
Sbjct: 37 LAWASAQAKALSKHQDFNSAVQLVENFCRNP---DGDEEG-----------VWC------ 76
Query: 120 SPFIQCKPIQNEPVYTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNS 179
++ KP N C+ + + R +
Sbjct: 77 --YVAGKPGDFGYCDLNYCEEAVEEETGDGLD----------------EDSDRAIEGATA 118
Query: 180 DCPLDRACQNQKCVDPCPGSCGYRARCQVYNHNPVCSCPPGYT 222
+ N CG R + + +
Sbjct: 119 TSE-YQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLES 160
Score = 30.2 bits (68), Expect = 3.3
Identities = 18/169 (10%), Positives = 35/169 (20%), Gaps = 41/169 (24%)
Query: 763 DGYTVCRP-ECVRNSDCANNKACIRNKCKNPCVPGTCGEGAICDVINHSVVCSCPPGTTG 821
+ + ++ D + + N C+NP EG C
Sbjct: 37 LAWASAQAKALSKHQDFNSAVQLVENFCRNP---DGDEEG-----------VWC------ 76
Query: 822 SPFIQCKPVIQEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNT 881
++ KP N C+ + + + R
Sbjct: 77 --YVAGKPGDFGYCDLNYCEEAVEEETGDGLD----------------EDSDRAIEGATA 118
Query: 882 DCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPICTCRPGFTG-EPRI 929
+ N CG + + + RI
Sbjct: 119 TSE-YQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRI 166
Score = 29.1 bits (65), Expect = 7.8
Identities = 18/131 (13%), Positives = 32/131 (24%), Gaps = 16/131 (12%)
Query: 636 PCGPYSQCRDINGSPSCSCLPNYIGAPPNCR--------PECVQNTECPYDKACINEKCR 687
PC ++ + S CR C + C C
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCE 94
Query: 688 DPCPGSCGQG---AQCRVINHSPVCYCPDGF-----IGDAFSSCYPKPIEPIQAPEQQAD 739
+ G G R I + F G + C +P+ ++ E + +
Sbjct: 95 EAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTE 154
Query: 740 PCICAPNAVCR 750
+ R
Sbjct: 155 RELLESYIDGR 165
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 466
Score = 32.5 bits (75), Expect = 0.82
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 19/56 (33%)
Query: 535 EVHKQ------AVCSCLPNYFGSPPNCRPECTVNSDCPLDKA------CFNQKCVD 578
EVH C C +YFG+ PN T CP+ N+ V+
Sbjct: 9 EVHLHLKTRTKMFCGCRADYFGAEPN---THT----CPVCLGLPGALPVPNRVAVE 57
Score = 31.7 bits (73), Expect = 1.2
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 860 CSCLPNYFGSPPNCRPECTVNTDCPLDKA------CVNQKCVD 896
C C +YFG+ PN +T CP+ N+ V+
Sbjct: 22 CGCRADYFGAEPN------THT-CPVCLGLPGALPVPNRVAVE 57
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 32.5 bits (73), Expect = 0.83
Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 19/134 (14%)
Query: 412 YTVQPVIQEDTCNCVPNAECRD-----GVCVCLPDYYGDGYVSCRPECVQNSDCPRNKAC 466
Y + + C C +A C C + G C+ P +
Sbjct: 286 YAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLP 345
Query: 467 IRNKCKNPCVPGTCGEGAICD-----------VINHAVMCTCPPGTTGSPFIQCKPVQNE 515
I N C+P G ++ V C CP TG I C+ ++ E
Sbjct: 346 IPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTG---ILCEKLRCE 402
Query: 516 PVYTNPCQPSPCGP 529
+ P
Sbjct: 403 EAGSCGSDSGQGAP 416
Score = 32.1 bits (72), Expect = 0.86
Identities = 24/166 (14%), Positives = 37/166 (22%), Gaps = 32/166 (19%)
Query: 13 RHGQEEDKFFTYFCVNSVPPPVQQDTCNCVPNAVCKDE-----VCVCLPDFYGDGYVSCR 67
D+ ++ + C C +A C C + G C+
Sbjct: 271 VGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCK 330
Query: 68 PECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICD-----------VVNHAVMCTCPPG 116
P + I N C+P G ++ V C CP
Sbjct: 331 KNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAA 390
Query: 117 TTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQCREINHQAVCSCLP 162
TG C+ C C + Q
Sbjct: 391 YTGI----------------LCEKLRCEEAGSCGSDSGQGAPPHGT 420
Score = 31.0 bits (69), Expect = 2.0
Identities = 35/251 (13%), Positives = 51/251 (20%), Gaps = 55/251 (21%)
Query: 615 RIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTE 674
I + P N ++ + + + A + +
Sbjct: 224 EIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLAR 283
Query: 675 CPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAP 734
Y + I + R C C N C C G C
Sbjct: 284 YFYAISDIKVRGRCKC---NLHATVCVYDNSKLTCECEHNTTGPDCGKC---------KK 331
Query: 735 EQQADPCI-CAPNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPC 793
Q P + + + C+P G VC E C N C N
Sbjct: 332 NYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNEL---LHCQNGGTCHNNVR---- 384
Query: 794 VPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCRE 853
C CP TG C+ C C
Sbjct: 385 -------------------CLCPAAYTGIL----------------CEKLRCEEAGSCGS 409
Query: 854 VNKQAVCSCLP 864
+ Q
Sbjct: 410 DSGQGAPPHGT 420
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 31.4 bits (70), Expect = 0.86
Identities = 20/95 (21%), Positives = 27/95 (28%), Gaps = 9/95 (9%)
Query: 630 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPP---NCRPECVQNTEC---PYDKACIN 683
+P + P CL G + + P +
Sbjct: 85 DPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFK 144
Query: 684 EKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGD 718
+ CPG C G C N +C CPDGF G
Sbjct: 145 TCQQAECPGGCRNGGFC---NERRICECPDGFHGP 176
Score = 30.7 bits (68), Expect = 1.5
Identities = 18/103 (17%), Positives = 26/103 (25%), Gaps = 9/103 (8%)
Query: 127 PIQNEPVYTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPP---GCRPECTVNSDC-- 181
+ + +P P Q CL G + +
Sbjct: 76 RSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILX 135
Query: 182 -PLDRACQNQKCVDPCPGSCGYRARCQVYNHNPVCSCPPGYTG 223
P + CPG C C N +C CP G+ G
Sbjct: 136 TPQNAIFFKTCQQAECPGGCRNGGFC---NERRICECPDGFHG 175
Score = 28.7 bits (63), Expect = 7.3
Identities = 19/99 (19%), Positives = 24/99 (24%), Gaps = 9/99 (9%)
Query: 834 PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPP---NCRPECTVNTDC---PLDK 887
+ +P P Q CL G + + P +
Sbjct: 81 GIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNA 140
Query: 888 ACVNQKCVDPCPGSCGQNANCRVINHSPICTCRPGFTGE 926
CPG C C N IC C GF G
Sbjct: 141 IFFKTCQQAECPGGCRNGGFC---NERRICECPDGFHGP 176
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 32.3 bits (73), Expect = 0.88
Identities = 21/158 (13%), Positives = 35/158 (22%), Gaps = 8/158 (5%)
Query: 138 CQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCP 197
Q P N + LP + P P S
Sbjct: 11 IQAMPSDLTISSAIQNIHSASKGLPLNHAALP---PTDYDRSPFVTSPISMTMPPHGSLQ 67
Query: 198 GSCGYRARCQVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARC 257
G Y + P YT +P S ++ + + T + P +C
Sbjct: 68 GYQTYGHFPSRAIKSE---YPDPYTSSPES--IMGYSYMDSYQTSSPASIPHLILELLKC 122
Query: 258 RVQNEHALCECLPDYYGNPYEGCRPECLINSDCPLSLA 295
+ + + E L +A
Sbjct: 123 EPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMA 160
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 32.3 bits (72), Expect = 0.92
Identities = 56/460 (12%), Positives = 102/460 (22%), Gaps = 20/460 (4%)
Query: 402 DILSSEYIQVYTVQPVIQEDTC-NCVPNAECRDGVCVCLPDYYGDGYVSCRPECVQNSDC 460
DI+SS+++ ++ +C C P+ + + C +C
Sbjct: 142 DIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRG 201
Query: 461 PRNKACIRNKCKNPCVPGTCGEGAICDVINHAVMC--TCPPGTTGSPFIQCKPVQNEPVY 518
C N+C C + +C C TCPP +P V E Y
Sbjct: 202 KSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKY 261
Query: 519 TNPCQPSPCGPNSQCREVHKQAVCSCLPNYF----GSPPNCRPECTVNSDCPLDKACFNQ 574
+ P + H V +C + + C+
Sbjct: 262 SFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEF 321
Query: 575 KCVDPCPGTCGQNANCRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYV----- 629
K T ++ F GD + P
Sbjct: 322 KDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFL 381
Query: 630 ----NPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEK 685
P + + I G + N +++ + D I
Sbjct: 382 LIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISG 441
Query: 686 CRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAP 745
++ C + + + + ++ +P C
Sbjct: 442 NKNLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVS 501
Query: 746 NAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPCVPGTCGEGAICD 805
+G E C + C+ C C
Sbjct: 502 CRNVSRGRECVDKCKLLEGEPREFVENSECIQC--HPECLPQAMNITCTGRGPDNCIQCA 559
Query: 806 VINHSVVC--SCPPGTTGSPFIQCKPVIQEPVYTNPCQPS 843
C +CP G G + C P+
Sbjct: 560 HYIDGPHCVKTCPAGVMGENNTLVWKYADAGHVCHLCHPN 599
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 32.2 bits (72), Expect = 0.99
Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 20/142 (14%)
Query: 774 RNSDCANNKACIRNKCKNPCVPGTCGEGA--ICDVINHSVVCSCPPGTTGSPFIQCKPVI 831
R + + + R +C + C+ + N+ + C S +C
Sbjct: 11 RLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCS---KCLEPC 67
Query: 832 QEPVYTNP------CQPSPCGPNSQCRE---------VNKQAVCSCLPNYFGSPPNCRPE 876
+E C+P + +C + KQ C G C
Sbjct: 68 KESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVES 127
Query: 877 CTVNTDCPLDKACVNQKCVDPC 898
C V+ +C K C + C C
Sbjct: 128 CEVDNECSGVKKCCSNGCGHTC 149
Score = 29.2 bits (64), Expect = 8.6
Identities = 23/145 (15%), Positives = 37/145 (25%), Gaps = 25/145 (17%)
Query: 52 CVCLPDFYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICDVVNHAVMC 111
C+ L + C ++K C +KC PC C
Sbjct: 30 CLSLQITRISAFFQHFQNNGSLVWCQNHKQC--SKCLEPCKESGDLRKHQCQS------- 80
Query: 112 TCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGC 171
C+P+ + Y + Q C G C
Sbjct: 81 ------------FCEPLFPKKSYECLTSCEFLKYILLVK----QGDCPAPEKASGFAAAC 124
Query: 172 RPECTVNSDCPLDRACQNQKCVDPC 196
C V+++C + C + C C
Sbjct: 125 VESCEVDNECSGVKKCCSNGCGHTC 149
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 30.9 bits (70), Expect = 1.1
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 134 YTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGS 167
YT C + C + +C E + C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 30.5 bits (69), Expect = 1.4
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 836 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS 869
YT C + C + +C E C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 29.7 bits (67), Expect = 2.6
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 518 YTNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGS 551
YT C + C + +C E C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 29.0 bits (65), Expect = 4.2
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 790 KNPCVPGTCGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVI 831
C +C C ++ C C PG +G +C+ ++
Sbjct: 119 TAACTNTSCSGHGECVETINNYTCKCDPGFSGL---KCEQIV 157
Score = 28.2 bits (63), Expect = 7.6
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 628 YVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNC 665
Y C + C + +C + + +C C P + G C
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSG--LKC 153
Score = 28.2 bits (63), Expect = 9.6
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 187 CQNQKCVDPCPGSCGYRARCQVYNHNPVCSCPPGYTG 223
C C SC C +N C C PG++G
Sbjct: 117 CYTAAC---TNTSCSGHGECVETINNYTCKCDPGFSG 150
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 31.9 bits (71), Expect = 1.1
Identities = 21/141 (14%), Positives = 36/141 (25%), Gaps = 15/141 (10%)
Query: 405 SSEYIQVYTVQPVIQEDTC--NCVPNAECRDGVCVCLPDYYGDGYVSCRPECVQNSDCPR 462
S + + + + V + C C + +C GVC C Y +C +S+
Sbjct: 176 SQKNVPPFGLDGVYISEPCPSYCSGHGDCISGVCFCDLGYTAAQG-TCVSNTPNHSEMFD 234
Query: 463 NKACIRNKCKNPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEP------ 516
+ G G G C +N G + P+
Sbjct: 235 RFEGKLSPLWYKITGGQVGTG--CGTLNDGRSLYF--NGLGKREARTVPLDTRNIRLVQF 290
Query: 517 --VYTNPCQPSPCGPNSQCRE 535
+ C E
Sbjct: 291 YIQIGSKTSGITCIKPRARNE 311
Score = 30.0 bits (66), Expect = 4.6
Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 4/91 (4%)
Query: 131 EPVYTNPCQPSPCGPNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQ 190
+ VY + PS C + C VC C Y + C +S+ +
Sbjct: 186 DGVYISEPCPSYCSGHGDCIS----GVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLS 241
Query: 191 KCVDPCPGSCGYRARCQVYNHNPVCSCPPGY 221
G + + + G
Sbjct: 242 PLWYKITGGQVGTGCGTLNDGRSLYFNGLGK 272
Score = 29.6 bits (65), Expect = 5.2
Identities = 13/69 (18%), Positives = 17/69 (24%), Gaps = 4/69 (5%)
Query: 186 ACQNQKCVDPCPGSCGYRARCQVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDP 245
+PCP C C + VC C GYT + P +
Sbjct: 184 GLDGVYISEPCPSYCSGHGDCI----SGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGK 239
Query: 246 CFPSPCGSN 254
P
Sbjct: 240 LSPLWYKIT 248
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 31.8 bits (72), Expect = 1.1
Identities = 12/65 (18%), Positives = 17/65 (26%), Gaps = 16/65 (24%)
Query: 270 PDYYGNPYEGCRPECLINSDCPLSLACIKNHCRDPCPGTCGVQAIC-SVSNHIPICYCPA 328
P +P + C D P C A C + C C
Sbjct: 5 PGVPTSPVWWNSAQ---------------RFCPDGSPSECHEHADCVLERDGSRSCVCAV 49
Query: 329 GFTGD 333
G+ G+
Sbjct: 50 GWAGN 54
Score = 29.5 bits (66), Expect = 6.3
Identities = 9/58 (15%), Positives = 14/58 (24%), Gaps = 13/58 (22%)
Query: 758 PDYYGDGYTVCRPE----------CVRNSDCANNKACIRNKCKNPCVPGTCGEGAICD 805
P + C ++DC + C G G G +C
Sbjct: 5 PGVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERD---GSRSCVCAVGWAGNGILCG 59
Score = 29.1 bits (65), Expect = 7.8
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 440 PDYYGDGYVSCRPE--C--VQNSDCPRNKACIR---NKCKNPCVPGTCGEGAICD 487
P + C S+C + C+ C G G G +C
Sbjct: 5 PGVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCG 59
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 31.7 bits (72), Expect = 1.2
Identities = 13/90 (14%), Positives = 21/90 (23%), Gaps = 11/90 (12%)
Query: 615 RIPPPPPQESPP---EYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQ 671
R Q P + + + ++ C C P +
Sbjct: 26 RWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTP--------LSKDERA 77
Query: 672 NTECPYDKACINEKCRDPCPGSCGQGAQCR 701
E + C+N C C G C
Sbjct: 78 QGEIACGEDCLNRLLMIECSSRCPNGDYCS 107
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 29.1 bits (66), Expect = 1.4
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 18/95 (18%)
Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 688
++ C + QC + +GS C C YI A C +E C
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVD--------------TDE-CSV 49
Query: 689 PCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSC 723
G+ C+ + C C +GF +C
Sbjct: 50 ---GNPCGNGTCKNVIGGFECTCEEGFEPGPMMTC 81
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 29.7 bits (67), Expect = 1.8
Identities = 23/127 (18%), Positives = 33/127 (25%), Gaps = 32/127 (25%)
Query: 413 TVQPVIQEDTCNCVPNAECRDGV----CVCLPDYYGDGYVSCRPECVQNSDCPRNKACIR 468
V P+ C + C DG+ C C + G C R
Sbjct: 10 LVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRF-------------------CQR 50
Query: 469 NKCKNPCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCG 528
C G C C+C PG ++ + +P PCG
Sbjct: 51 EVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKL---------GDDLLQCHPAVKFPCG 101
Query: 529 PNSQCRE 535
+ E
Sbjct: 102 RPWKRME 108
Score = 28.9 bits (65), Expect = 2.8
Identities = 22/127 (17%), Positives = 31/127 (24%), Gaps = 32/127 (25%)
Query: 29 SVPPPVQQDTCNCVPNAVCKDEV----CVCLPDFYGDGYVSCRPECVLNSDCPSNKACIR 84
V P C + C D + C C + G C R
Sbjct: 10 LVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRF-------------------CQR 50
Query: 85 NKCKNPCVPGTCGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCG 144
C G C C+C PG ++ + +P PCG
Sbjct: 51 EVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKL---------GDDLLQCHPAVKFPCG 101
Query: 145 PNSQCRE 151
+ E
Sbjct: 102 RPWKRME 108
Score = 28.5 bits (64), Expect = 3.9
Identities = 21/115 (18%), Positives = 26/115 (22%), Gaps = 32/115 (27%)
Query: 743 CAPNAVCRDNV----CVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPCVPGTC 798
C + C D + C C + G C R C
Sbjct: 22 CCGHGTCIDGIGSFSCDCRSGWEGRF-------------------CQREVSFLNCSLDNG 62
Query: 799 GEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCRE 853
G C CSC PG +P PCG + E
Sbjct: 63 GCTHYCLEEVGWRRCSCAPGYKLGD---DLLQC------HPAVKFPCGRPWKRME 108
Score = 27.4 bits (61), Expect = 9.9
Identities = 16/90 (17%), Positives = 24/90 (26%), Gaps = 17/90 (18%)
Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 688
+ S C + C D GS SC C + G + + ++
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG---------------RFCQREVSFLNCS 58
Query: 689 PCPGSCGQGAQCRVINHSPVCYCPDGFIGD 718
G C C C C G+
Sbjct: 59 LDNGGCTH--YCLEEVGWRRCSCAPGYKLG 86
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 31.5 bits (72), Expect = 1.9
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 349 RDPCSTTQCGLNAICTVI-NGAAQCACLLLL 378
+ C QCG CTVI +G AC++ +
Sbjct: 37 KVGCGKGQCGA---CTVILDGKVVRACIIKM 64
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A
{Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1
d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Length = 907
Score = 31.1 bits (71), Expect = 2.0
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 349 RDPCSTTQCGLNAICTV-INGAAQCACLLLL 378
+ C QCG C+V ++G AC+ +
Sbjct: 37 KVGCEQGQCGA---CSVILDGKVVRACVTKM 64
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 29.6 bits (67), Expect = 2.5
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 12/104 (11%)
Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 688
++ C SPC C++ GS C C + C++ + + I+ +C
Sbjct: 4 IDECESSPCI-NGVCKNSPGSFICECSSESTLD--PTKTICIETIKGTCWQTVIDGRCEI 60
Query: 689 PCPGSCGQGAQCRVINH---------SPVCYCPDGFIGDAFSSC 723
G+ + C + C G+ + C
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQC 104
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA
complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga
maritima}
Length = 482
Score = 30.5 bits (70), Expect = 2.9
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 19/56 (33%)
Query: 535 EVHKQ------AVCSCLPNYFGSPPNCRPECTVNSDCPLDKA------CFNQKCVD 578
E+H Q A CSC + F PPN CP+ N++ +
Sbjct: 10 EIHVQLSTKTKAFCSCPADVFELPPNTAI-------CPVCTGQPGALPVPNEEMIR 58
Score = 30.1 bits (69), Expect = 3.9
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 860 CSCLPNYFGSPPNCRPECTVNTDCPLDKA------CVNQKCVD 896
CSC + F PPN CP+ N++ +
Sbjct: 23 CSCPADVFELPPN------TAI-CPVCTGQPGALPVPNEEMIR 58
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein
biosynthesis, NUC binding, amino acid-binding,
ATP-binding, metal-binding; HET: G5A EPE; 1.90A
{Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A*
3hxw_A* 3hxx_A* 3hxy_A*
Length = 441
Score = 30.6 bits (70), Expect = 2.9
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 18/46 (39%)
Query: 142 PCGPNSQCREINHQAVCSCLPNYF--GSPPGCRPECTVNSDCPLDR 185
PCGP C EI ++ G P + D DR
Sbjct: 177 PCGP---CTEI-----------FYDHGDHIWGGPPGSPEEDG--DR 206
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 30.4 bits (68), Expect = 3.4
Identities = 30/211 (14%), Positives = 47/211 (22%), Gaps = 17/211 (8%)
Query: 91 CVPGTCGEGAICDVVNHAVMCTCPPGTTGSP-FIQCKPIQNEPVYTNPCQ-PSPCGPNSQ 148
+ C +C C CPPG G C+ C C
Sbjct: 200 HLCTACMNNGVCHEDTGE--CICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVF 257
Query: 149 CREINHQAVCSCLPNYFGSPPGCR-PECTVNSDCPLDRACQNQKCVDPCPG--------- 198
C + CSC + G DC L +C N + D G
Sbjct: 258 CLPDPYG--CSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQG 315
Query: 199 -SCGYRARCQVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARC 257
C ++ F+ P + +
Sbjct: 316 LQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKD 375
Query: 258 RVQNEHALCECLPDYYGNPYEGCRPECLINS 288
+H + P + C +N+
Sbjct: 376 FNHTDHFSVAIFTIHRILPPDSGVWVCSVNT 406
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 29.6 bits (66), Expect = 4.0
Identities = 19/112 (16%), Positives = 26/112 (23%), Gaps = 10/112 (8%)
Query: 652 CSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYC 711
C C YIG C T+ + +D C C C C
Sbjct: 109 CRCDTGYIG------KNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC----VCGQCLC 158
Query: 712 PDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDNVCVCLPDYYGD 763
+ + I C +C C C P + G
Sbjct: 159 HTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGS 210
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 30.2 bits (67), Expect = 4.1
Identities = 31/310 (10%), Positives = 62/310 (20%), Gaps = 17/310 (5%)
Query: 37 DTCNCVPNAVCKDEVCVCL--PDFYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPG 94
++ C+P D C D + +S C + + + C+
Sbjct: 135 NSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS---GECIHS 191
Query: 95 T--CGEGAICDVVNHAVMC---TCPPGTTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQC 149
+ C G C + C TC P C + C+
Sbjct: 192 SWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVN 251
Query: 150 REINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARCQVY 209
+ + + D + + + G C
Sbjct: 252 VTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDL 311
Query: 210 NHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPCGSNARCRVQNEHALCECL 269
C CP G+ +C DP S N + + L
Sbjct: 312 KIGYECLCPDGFQLVAQRRC-------EDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQL 364
Query: 270 PDYYGNPYEGCRPECLINSDCPLSLACIKNHCRDPCPGTCGVQAICSVSNHIPICYCPAG 329
+ L ++ + + + +
Sbjct: 365 DPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD 424
Query: 330 FTGDAFRQCS 339
+
Sbjct: 425 LSQRMICSTQ 434
Score = 29.4 bits (65), Expect = 6.8
Identities = 37/291 (12%), Positives = 58/291 (19%), Gaps = 22/291 (7%)
Query: 630 NPCIPSP--CGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEK-- 685
+ CIP C C D + C Y C CI+
Sbjct: 137 STCIPQLWACDNDPDCEDGSDEWPQRCRGLY--VFQGDSSPCSAFEFHCLSGECIHSSWR 194
Query: 686 --CRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQ--QADPC 741
C + C DG C + + E
Sbjct: 195 CDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTL 254
Query: 742 ICAPNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKNPCVPGTCGEG 801
PN + D + CR C+ N
Sbjct: 255 CEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSH-------- 306
Query: 802 AICDVINHSVVCSCPPGTTGSPFIQCKPVIQ---EPVYTNPCQPSPCGPNSQCREVNKQA 858
+C+ + C CP G +C+ + + + C G QC E +
Sbjct: 307 -VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLD 365
Query: 859 VCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCR 909
+ GS + +
Sbjct: 366 PHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA 416
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 29.9 bits (67), Expect = 4.4
Identities = 22/125 (17%), Positives = 30/125 (24%), Gaps = 32/125 (25%)
Query: 599 CTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNY 658
+ T +I P P E P+
Sbjct: 352 LSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQPAQ---------------------- 389
Query: 659 IGAPPNCRPECVQNTECPYDKACIN-----EKCRDP-CPGSCGQGAQCRVINHSPVCYCP 712
C C P K C + + CR C +C G C N C C
Sbjct: 390 -TLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNK---CLCK 445
Query: 713 DGFIG 717
G++G
Sbjct: 446 KGYLG 450
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 29.8 bits (66), Expect = 5.4
Identities = 60/399 (15%), Positives = 95/399 (23%), Gaps = 40/399 (10%)
Query: 419 QEDTCNCVPNA------ECRDGVCVCLPDYYG-DGYVSCRPECVQNSDCPRNKACIRNKC 471
E C+ C V C+P ++ DG V C + P+ + +C
Sbjct: 54 DESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRC 113
Query: 472 KN-PCVPGTCGEGAICDVINHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPN 530
+ C+ + D ++ + +CP T G QC P C
Sbjct: 114 HDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDG 173
Query: 531 SQCREVHKQAVCSCLPNYFGSPPNCRP---------------ECTVNSDCPLDKACFNQK 575
S C L + G C C DC DK+
Sbjct: 174 SDEWPQR----CRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCK-DKSDEENC 228
Query: 576 CVDPCPGTCGQNANCRVINHNPSCTCKAGFT-GDPRVFCSRIPPPPPQESPPEYVNPCIP 634
V C Q ++ I+ + C + V C + + CI
Sbjct: 229 AVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECIT 288
Query: 635 SP--CGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDP--- 689
C CRD + P C N + + Y+ C +
Sbjct: 289 LDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR 348
Query: 690 ------CPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCIC 743
C C + C C +GF D +
Sbjct: 349 CEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRK 408
Query: 744 APNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNK 782
+ T + SD +
Sbjct: 409 MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM 447
Score = 29.8 bits (66), Expect = 6.3
Identities = 61/428 (14%), Positives = 101/428 (23%), Gaps = 22/428 (5%)
Query: 564 DCPLDKACFNQKCVDPCPGTCGQNANCRVINH----NPSCTCKAGFTGDPRVFCSRIPPP 619
L A D C Q + + I++ + S C+ G C +
Sbjct: 8 TVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQET-CLSVTCK 66
Query: 620 PPQESPPEYVNPCIPSP--CGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNT-ECP 676
S VN CIP C C + + C +C+ C
Sbjct: 67 SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCD 126
Query: 677 YDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYP----KPIEPIQ 732
D+ C++ CP A + + + + P + D C P
Sbjct: 127 SDRDCLDGSDEASCPVLTCGPASFQCNSSTCI---PQLWACDNDPDCEDGSDEWPQRCRG 183
Query: 733 APEQQADPCICAPNAV-CRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNKCKN 791
Q D C+ C C+ + P+C SD N +
Sbjct: 184 LYVFQGDSSPCSAFEFHCLSGECI-----HSSWRCDGGPDCKDKSDEENCAVATCRPDEF 238
Query: 792 PCVPGTCGEGA-ICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQ 850
C G C G+ CD S G + + C
Sbjct: 239 QCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARD 298
Query: 851 CREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRV 910
CR+ + + + C N + + C + + +
Sbjct: 299 CRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDP 358
Query: 911 INHSPICTCRPGFTGEPRIRCSPIPRKLFVPADQASQENLESDVHQYHHLRLLSHHRNQS 970
S +C G + S L L S
Sbjct: 359 DTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTS 418
Query: 971 IHAIHHHA 978
+ +
Sbjct: 419 LIPNLRNV 426
Score = 29.4 bits (65), Expect = 6.8
Identities = 32/304 (10%), Positives = 52/304 (17%), Gaps = 19/304 (6%)
Query: 613 CSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQN 672
C + P C C D + C Y C
Sbjct: 140 CPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLY--VFQGDSSPCSAF 197
Query: 673 TECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQ 732
CI+ R C + + V C + +C + +
Sbjct: 198 EFHCLSGECIHSSWRCDGGPDCKDKSDEE---NCAVATCRPDEFQCSDGNCIHGSRQCDR 254
Query: 733 A---------PEQQADPCICAPNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKA 783
PN + D + CR
Sbjct: 255 EYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNE 314
Query: 784 CIRNKCKNPCVPGTCGEGAICD-----VINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTN 838
C+ N V G C + C V E Y
Sbjct: 315 CLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKC 374
Query: 839 PCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCVDPC 898
C+ ++ + + T + V +
Sbjct: 375 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA 434
Query: 899 PGSC 902
Sbjct: 435 SNRI 438
Score = 29.4 bits (65), Expect = 7.1
Identities = 30/233 (12%), Positives = 51/233 (21%), Gaps = 8/233 (3%)
Query: 26 CVNSVPPPVQQDTCNCVPNAVCKDEVCVCLPDFYGDGYVSCRPECVLNSDCPSNKACIRN 85
Q D+ C + DG C+ + + +
Sbjct: 179 QRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEF 238
Query: 86 KCKN-PCVPGT--CGEGAICDVVNHAVMCTCPPGTTGSPFIQCKPIQNEPVYTNPCQPSP 142
+C + C+ G+ C C ++ V C G +C + +
Sbjct: 239 QCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARD 298
Query: 143 CGPNSQCREINHQAVCSCLPNYFGSPPGCRPECTVNSDCPLDRACQNQK----CVDPCPG 198
C S CL N G C D + +D C
Sbjct: 299 CRDWSDEPIKECG-TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD 357
Query: 199 SCGYRARCQVYNHNPVCSCPPGYTGNPFSQCLLPPTPTPTQATPTDPCFPSPC 251
C C C G+ +P ++
Sbjct: 358 PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 410
>1nst_A NST1, heparan sulfate N-deacetylase/N-sulfotransferase; PAP,
haparin sulfate, haparin sulfate biosynthesis,
glycoprotein; HET: A3P; 2.30A {Homo sapiens} SCOP:
c.37.1.5
Length = 325
Score = 29.5 bits (65), Expect = 5.6
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 496 TCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREVHKQAVCSCLPNYF 549
T PP + Q + +P++ +PC+ K+ C P
Sbjct: 3 TLPPVQLAQKYFQIFSEEKDPLWQDPCEDK-----RHKDIWSKEKTCDRFPKLL 51
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1
d.15.4.2
Length = 168
Score = 28.7 bits (65), Expect = 6.2
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 352 CSTTQCGLNAICTVI-NGAAQCACLLL 377
C CG CT++ +GA +CL L
Sbjct: 48 CEQGVCG---SCTILIDGAPMRSCLTL 71
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 27.8 bits (61), Expect = 6.3
Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 17/88 (19%)
Query: 630 NPCIPSPCGPYSQC-RDINGSPSCSCLPNYIGAPPNCRPE-----------CVQNTECPY 677
+ C+ C S C R ++ C CL NY C C + +C
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTE 64
Query: 678 DKACINEK-----CRDPCPGSCGQGAQC 700
+ + N K C P G C
Sbjct: 65 EDSGSNGKKITCECTKPDSYPLFDGIFC 92
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 29.5 bits (66), Expect = 6.7
Identities = 17/56 (30%), Positives = 19/56 (33%)
Query: 617 PPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQN 672
PP PP+ P P G Q G P GAPP P+ V N
Sbjct: 388 YPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVDN 443
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 27.7 bits (61), Expect = 7.1
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 13/84 (15%)
Query: 630 NPCIPSPCGPYSQC-RDINGSPSCSCLPNYIGAPPNCRPE-----------CVQNTEC-P 676
+ CI + + C R ++G+ CL + C P C EC
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKM 64
Query: 677 YDKACINEKCRDPCPGSCGQGAQC 700
DK I KC +G C
Sbjct: 65 NDKNEIVCKCTKEGSEPLFEGVFC 88
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 29.2 bits (66), Expect = 7.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 613 CSRIPPPPPQESPPEYVNPCIPSPC 637
+P P P E P ++++P PS C
Sbjct: 3 PEFMPQPKPYERPADFIDPGKPSKC 27
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 27.8 bits (61), Expect = 7.6
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 12/87 (13%)
Query: 630 NPCIPSPCGPYSQC-RDINGSPSCSCLPNYIGAPPNCRPE----------CVQNTEC-PY 677
+ CI + + C R ++G+ CL + C P C EC
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMD 70
Query: 678 DKACINEKCRDPCPGSCGQGAQCRVIN 704
DK + KC +G C +
Sbjct: 71 DKKEVECKCTKEGSEPLFEGVFCSSSS 97
Score = 27.4 bits (60), Expect = 9.0
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 17/91 (18%)
Query: 519 TNPCQPSPCGPNSQCREVHK-QAVCSCLPNYFGSPPNCRPECTVNSDCPLDKACFNQKCV 577
+ C + N+ C CL + C P C
Sbjct: 10 AHKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKC---------VPASITCEEN--- 57
Query: 578 DPCPGTCGQNANCRVINHNP-SCTCKAGFTG 607
G C A C + + C C +
Sbjct: 58 ---NGGCAPEAECTMDDKKEVECKCTKEGSE 85
Score = 27.4 bits (60), Expect = 9.0
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 17/91 (18%)
Query: 837 TNPCQPSPCGPNSQCREVNK-QAVCSCLPNYFGSPPNCRPECTVNTDCPLDKACVNQKCV 895
+ C + N+ C CL + C P C
Sbjct: 10 AHKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKC---------VPASITCEEN--- 57
Query: 896 DPCPGSCGQNANCRVIN-HSPICTCRPGFTG 925
G C A C + + C C +
Sbjct: 58 ---NGGCAPEAECTMDDKKEVECKCTKEGSE 85
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 28.1 bits (63), Expect = 8.9
Identities = 37/191 (19%), Positives = 55/191 (28%), Gaps = 56/191 (29%)
Query: 751 DNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIR-NKC------------KNPCVPGT 797
+ C YYG G C C D + AC + + C G
Sbjct: 16 RSAVTCDDYYYGFG---CNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGC 72
Query: 798 CGEGAICDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCREVNKQ 857
+ C + C C G G Y + C P P + C E +
Sbjct: 73 SPKHGSCKL---PGDCRCQYGWQGL-------------YCDKCIPHPGCVHGICNEPWQ- 115
Query: 858 AVCSCLPNYFGSPPNCRPECTVNTD-CPLDKACVNQ-KCVDPCPGSCGQNANCRVINHSP 915
C C N+ G C + + C + C+N C + P
Sbjct: 116 --CLCETNWGG------QLCDKDLNYCGTHQPCLNGGTCSNTGPDK-------------Y 154
Query: 916 ICTCRPGFTGE 926
C+C G++G
Sbjct: 155 QCSCPEGYSGP 165
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 28.8 bits (64), Expect = 9.4
Identities = 55/274 (20%), Positives = 74/274 (27%), Gaps = 52/274 (18%)
Query: 635 SPCGPYSQCRDINGSPSCSCLPNY-----IGAPPNCRPECVQNTE---CPYDKACINEKC 686
S C R+ C+ + +P C V+ E C + C + C
Sbjct: 189 SDCS-QKDHREFLIKNMPQCILKKPLKTDVVSPAVCGNYFVEVGEECDCGSPRTCRDPCC 247
Query: 687 RDPCPGSC--GQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICA 744
+C QGAQC C A + C E C
Sbjct: 248 ---DATTCKLRQGAQCA-----EGLCCDQCRFKGAGTECRAAKDE-------------CD 286
Query: 745 PNAVCRDNVCVCLPDYYGDGYTVCRPECVRNSDCANNKACIRNK-CKNPCVPGTCGEGAI 803
VC C + +G C N K I C PG
Sbjct: 287 MADVCTGRSAECTDRFQRNGQPCKNNNGY----CYNGKCPIMADQCIALFGPGATVSQDA 342
Query: 804 CDVINHSVVCSCPPGTTGSPFIQCKPVIQEPVYTNPCQPSPCGPNSQCREVNKQAVCSCL 863
C N + I C+P Q CG C + + C
Sbjct: 343 CFQFNREGNHYGYCRKEQNTKIACEP-----------QDVKCG-RLYCFPNSPENKNPC- 389
Query: 864 PNYFGSPPNCRPECTVN-TDCPLDKACVNQKCVD 896
N + SP + + T C KAC N +CVD
Sbjct: 390 -NIYYSPNDEDKGMVLPGTKCADRKACSNGQCVD 422
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 27.3 bits (61), Expect = 9.7
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 661 APPNCRPECVQNTECPYDKAC-------INEKCRDPCPGSCGQGAQCRVINHSPVCYCPD 713
NC +C + Y C +E R + N C CP+
Sbjct: 8 FRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPE 67
Query: 714 GFIGDAFSSC 723
G+I D C
Sbjct: 68 GYILDDGFIC 77
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 28.9 bits (64), Expect = 9.8
Identities = 24/190 (12%), Positives = 41/190 (21%), Gaps = 16/190 (8%)
Query: 54 CLPDFYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICDVVNHAVMCTC 113
C F C+R G V ++ C
Sbjct: 339 CDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQNHGRKFVQGKSIDVAC 398
Query: 114 PPG--------------TTGSPFIQCKPIQNEPVYTNPCQPSPCGPNSQCREINHQAVCS 159
PG SP +C ++ + + + + +A
Sbjct: 399 HPGYALPKAQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQ 458
Query: 160 CLPNYFGSPPGCRPECTVNSDCPLDRACQNQKCVDPCPGSCGYRARCQVYNHNPVC--SC 217
C Y + D + + C P + + + N C
Sbjct: 459 CKLGYVTADGETSGSIRCGKDGWSAQPTCIKSCDIPVFMNARTKNDFTWFKLNDTLDYEC 518
Query: 218 PPGYTGNPFS 227
GY N S
Sbjct: 519 HDGYESNTGS 528
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.496
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,928,692
Number of extensions: 1036780
Number of successful extensions: 8255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4363
Number of HSP's successfully gapped: 1458
Length of query: 1010
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 907
Effective length of database: 3,825,930
Effective search space: 3470118510
Effective search space used: 3470118510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.1 bits)