RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5613
         (1010 letters)



>d1oiga_ g.3.18.1 (A:) Dumpy {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 26

 Score = 33.5 bits (76), Expect = 0.005
 Identities = 18/24 (75%), Positives = 22/24 (91%)

Query: 67 RPECVLNSDCPSNKACIRNKCKNP 90
          RPECVLNSDCPSN+AC+  KC++P
Sbjct: 1  RPECVLNSDCPSNQACVNQKCRDP 24



 Score = 31.6 bits (71), Expect = 0.021
 Identities = 16/24 (66%), Positives = 22/24 (91%)

Query: 666 RPECVQNTECPYDKACINEKCRDP 689
           RPECV N++CP ++AC+N+KCRDP
Sbjct: 1   RPECVLNSDCPSNQACVNQKCRDP 24



 Score = 31.2 bits (70), Expect = 0.024
 Identities = 17/24 (70%), Positives = 21/24 (87%)

Query: 874 RPECTVNTDCPLDKACVNQKCVDP 897
           RPEC +N+DCP ++ACVNQKC DP
Sbjct: 1   RPECVLNSDCPSNQACVNQKCRDP 24



 Score = 31.2 bits (70), Expect = 0.030
 Identities = 17/24 (70%), Positives = 20/24 (83%)

Query: 172 RPECTVNSDCPLDRACQNQKCVDP 195
           RPEC +NSDCP ++AC NQKC DP
Sbjct: 1   RPECVLNSDCPSNQACVNQKCRDP 24



 Score = 30.8 bits (69), Expect = 0.037
 Identities = 17/24 (70%), Positives = 20/24 (83%)

Query: 556 RPECTVNSDCPLDKACFNQKCVDP 579
           RPEC +NSDCP ++AC NQKC DP
Sbjct: 1   RPECVLNSDCPSNQACVNQKCRDP 24



 Score = 30.5 bits (68), Expect = 0.045
 Identities = 16/24 (66%), Positives = 20/24 (83%)

Query: 451 RPECVQNSDCPRNKACIRNKCKNP 474
           RPECV NSDCP N+AC+  KC++P
Sbjct: 1   RPECVLNSDCPSNQACVNQKCRDP 24



 Score = 28.9 bits (64), Expect = 0.19
 Identities = 15/24 (62%), Positives = 20/24 (83%)

Query: 769 RPECVRNSDCANNKACIRNKCKNP 792
           RPECV NSDC +N+AC+  KC++P
Sbjct: 1   RPECVLNSDCPSNQACVNQKCRDP 24



 Score = 28.9 bits (64), Expect = 0.20
 Identities = 15/24 (62%), Positives = 19/24 (79%)

Query: 281 RPECLINSDCPLSLACIKNHCRDP 304
           RPEC++NSDCP + AC+   CRDP
Sbjct: 1   RPECVLNSDCPSNQACVNQKCRDP 24


>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 39

 Score = 28.5 bits (64), Expect = 0.32
 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNC 665
            + C  +PC     C+D   S  C C   + G   NC
Sbjct: 3   GDQCESNPCLNGGSCKDDINSYECWCPFGFEG--KNC 37



 Score = 26.9 bits (60), Expect = 1.3
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 243 TDPCFPSPCGSNARCRVQNEHALCECLPDYYG 274
            D C  +PC +   C+       C C   + G
Sbjct: 3   GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34



 Score = 26.2 bits (58), Expect = 2.0
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 135 TNPCQPSPCGPNSQCREINHQAVCSCLPNYFG 166
            + C+ +PC     C++  +   C C   + G
Sbjct: 3   GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34



 Score = 25.8 bits (57), Expect = 2.6
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 837 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNC 873
            + C+ +PC     C++      C C   + G   NC
Sbjct: 3   GDQCESNPCLNGGSCKDDINSYECWCPFGFEG--KNC 37



 Score = 25.8 bits (57), Expect = 2.7
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 519 TNPCQPSPCGPNSQCREVHKQAVCSCLPNYFGSPPNC 555
            + C+ +PC     C++      C C   + G   NC
Sbjct: 3   GDQCESNPCLNGGSCKDDINSYECWCPFGFEG--KNC 37



 Score = 25.8 bits (57), Expect = 2.8
 Identities = 10/31 (32%), Positives = 12/31 (38%)

Query: 791 NPCVPGTCGEGAICDVINHSVVCSCPPGTTG 821
           + C    C  G  C    +S  C CP G  G
Sbjct: 4   DQCESNPCLNGGSCKDDINSYECWCPFGFEG 34



 Score = 24.6 bits (54), Expect = 7.2
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 473 NPCVPGTCGEGAICDVINHAVMCTCPPGTTG 503
           + C    C  G  C    ++  C CP G  G
Sbjct: 4   DQCESNPCLNGGSCKDDINSYECWCPFGFEG 34



 Score = 24.6 bits (54), Expect = 7.3
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 89  NPCVPGTCGEGAICDVVNHAVMCTCPPGTTG 119
           + C    C  G  C    ++  C CP G  G
Sbjct: 4   DQCESNPCLNGGSCKDDINSYECWCPFGFEG 34


>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
           1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 39

 Score = 28.1 bits (63), Expect = 0.40
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 660
           VN C+ +PC   + C D  G   C C+P Y G
Sbjct: 1   VNECVSNPCQNDATCLDQIGEFQCICMPGYEG 32



 Score = 25.0 bits (55), Expect = 5.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 136 NPCQPSPCGPNSQCREINHQAVCSCLPNYFG 166
           N C  +PC  ++ C +   +  C C+P Y G
Sbjct: 2   NECVSNPCQNDATCLDQIGEFQCICMPGYEG 32



 Score = 25.0 bits (55), Expect = 5.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 520 NPCQPSPCGPNSQCREVHKQAVCSCLPNYFG 550
           N C  +PC  ++ C +   +  C C+P Y G
Sbjct: 2   NECVSNPCQNDATCLDQIGEFQCICMPGYEG 32



 Score = 25.0 bits (55), Expect = 6.1
 Identities = 11/31 (35%), Positives = 11/31 (35%)

Query: 791 NPCVPGTCGEGAICDVINHSVVCSCPPGTTG 821
           N CV   C   A C        C C PG  G
Sbjct: 2   NECVSNPCQNDATCLDQIGEFQCICMPGYEG 32



 Score = 24.6 bits (54), Expect = 6.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 838 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 868
           N C  +PC  ++ C +   +  C C+P Y G
Sbjct: 2   NECVSNPCQNDATCLDQIGEFQCICMPGYEG 32



 Score = 24.6 bits (54), Expect = 8.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 244 DPCFPSPCGSNARCRVQNEHALCECLPDYYG 274
           + C  +PC ++A C  Q     C C+P Y G
Sbjct: 2   NECVSNPCQNDATCLDQIGEFQCICMPGYEG 32


>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 37

 Score = 27.7 bits (62), Expect = 0.64
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 660
            + C  SPC     C+D   S  C CLP + G
Sbjct: 2   GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33



 Score = 24.7 bits (54), Expect = 6.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 136 NPCQPSPCGPNSQCREINHQAVCSCLPNYFG 166
           + C  SPC     C++     +C CLP + G
Sbjct: 3   DQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33



 Score = 24.7 bits (54), Expect = 6.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 244 DPCFPSPCGSNARCRVQNEHALCECLPDYYG 274
           D C  SPC +   C+ Q +  +C CLP + G
Sbjct: 3   DQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33



 Score = 24.7 bits (54), Expect = 7.1
 Identities = 9/31 (29%), Positives = 11/31 (35%)

Query: 791 NPCVPGTCGEGAICDVINHSVVCSCPPGTTG 821
           + C    C  G  C     S +C C P   G
Sbjct: 3   DQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33



 Score = 24.7 bits (54), Expect = 8.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 520 NPCQPSPCGPNSQCREVHKQAVCSCLPNYFG 550
           + C  SPC     C++  +  +C CLP + G
Sbjct: 3   DQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33



 Score = 24.3 bits (53), Expect = 8.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 838 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 868
           + C  SPC     C++  +  +C CLP + G
Sbjct: 3   DQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33


>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
           IIa) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 48

 Score = 27.5 bits (61), Expect = 0.93
 Identities = 11/38 (28%), Positives = 14/38 (36%)

Query: 889 CVNQKCVDPCPGSCGQNANCRVINHSPICTCRPGFTGE 926
           C+      PC   C  +  C     S  C CR G+ G 
Sbjct: 2   CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 39



 Score = 25.2 bits (55), Expect = 5.9
 Identities = 9/37 (24%), Positives = 11/37 (29%)

Query: 187 CQNQKCVDPCPGSCGYRARCQVYNHNPVCSCPPGYTG 223
           C       PC   C     C     +  C C  G+ G
Sbjct: 2   CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG 38



 Score = 24.8 bits (54), Expect = 9.6
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 660
            +PC    CG +  C D  GS SC C   + G
Sbjct: 8   EHPCASLCCG-HGTCIDGIGSFSCDCRSGWEG 38


>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 39

 Score = 26.7 bits (59), Expect = 1.2
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 243 TDPCFPSPCGSNARCRVQNEHALCECLPDYYGNPYE 278
           T  C  + C  +  C     +  C+C P + G   E
Sbjct: 1   TAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 36



 Score = 25.9 bits (57), Expect = 2.9
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 135 TNPCQPSPCGPNSQCREINHQAVCSCLPNYFG 166
           T  C  + C  + +C E  +   C C P + G
Sbjct: 1   TAACTNTSCSGHGECVETINNYTCKCDPGFSG 32



 Score = 25.9 bits (57), Expect = 2.9
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 519 TNPCQPSPCGPNSQCREVHKQAVCSCLPNYFG 550
           T  C  + C  + +C E      C C P + G
Sbjct: 1   TAACTNTSCSGHGECVETINNYTCKCDPGFSG 32



 Score = 25.5 bits (56), Expect = 3.3
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 837 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 868
           T  C  + C  + +C E      C C P + G
Sbjct: 1   TAACTNTSCSGHGECVETINNYTCKCDPGFSG 32



 Score = 25.5 bits (56), Expect = 3.6
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 630 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 660
             C  + C  + +C +   + +C C P + G
Sbjct: 2   AACTNTSCSGHGECVETINNYTCKCDPGFSG 32



 Score = 25.1 bits (55), Expect = 5.6
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 791 NPCVPGTCGEGAICDVINHSVVCSCPPGTTG 821
             C   +C     C    ++  C C PG +G
Sbjct: 2   AACTNTSCSGHGECVETINNYTCKCDPGFSG 32


>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
           1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 26.2 bits (58), Expect = 1.7
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 630 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 660
           + C  SPC    +C D      C C   + G
Sbjct: 1   DECASSPCLHNGRCLDKINEFQCECPTGFTG 31



 Score = 24.2 bits (53), Expect = 8.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 244 DPCFPSPCGSNARCRVQNEHALCECLPDYYG 274
           D C  SPC  N RC  +     CEC   + G
Sbjct: 1   DECASSPCLHNGRCLDKINEFQCECPTGFTG 31


>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 39

 Score = 26.2 bits (58), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 630 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 660
           + C  SPC    +C+D  G  +C+CL  + G
Sbjct: 1   DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31



 Score = 25.0 bits (55), Expect = 5.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 244 DPCFPSPCGSNARCRVQNEHALCECLPDYYG 274
           D C  SPC +  +C+       C CL  + G
Sbjct: 1   DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31



 Score = 24.7 bits (54), Expect = 7.5
 Identities = 7/31 (22%), Positives = 9/31 (29%)

Query: 791 NPCVPGTCGEGAICDVINHSVVCSCPPGTTG 821
           + C    C     C        C+C  G  G
Sbjct: 1   DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31



 Score = 24.3 bits (53), Expect = 9.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 136 NPCQPSPCGPNSQCREINHQAVCSCLPNYFG 166
           + C+ SPC    +C++   +  C+CL  + G
Sbjct: 1   DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31


>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 40

 Score = 26.3 bits (58), Expect = 2.1
 Identities = 10/36 (27%), Positives = 12/36 (33%)

Query: 243 TDPCFPSPCGSNARCRVQNEHALCECLPDYYGNPYE 278
           T  C    C     C     +  C C P +YG   E
Sbjct: 1   TASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 36



 Score = 25.5 bits (56), Expect = 4.0
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 135 TNPCQPSPCGPNSQCREINHQAVCSCLPNYFG 166
           T  CQ   C    +C E      CSC P ++G
Sbjct: 1   TASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32



 Score = 25.5 bits (56), Expect = 4.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 519 TNPCQPSPCGPNSQCREVHKQAVCSCLPNYFG 550
           T  CQ   C    +C E      CSC P ++G
Sbjct: 1   TASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32



 Score = 25.1 bits (55), Expect = 4.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 837 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 868
           T  CQ   C    +C E      CSC P ++G
Sbjct: 1   TASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32



 Score = 25.1 bits (55), Expect = 5.8
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 630 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 660
             C    C    +C +  G+ +CSC P + G
Sbjct: 2   ASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32


>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 43

 Score = 26.3 bits (58), Expect = 2.4
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 629 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNC 665
           ++ C       + QC + +GS  C C   YI A   C
Sbjct: 5   MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC 41


>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 40

 Score = 24.8 bits (54), Expect = 6.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 583 TCGQNANCRVINHNPSCTCKAGFTGD 608
            C  +A CR       C C A +TG+
Sbjct: 8   QCSVHAECRDYATGFCCRCVANYTGN 33



 Score = 24.8 bits (54), Expect = 7.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 636 PCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPE 668
            C  +++CRD      C C+ NY G    C  E
Sbjct: 8   QCSVHAECRDYATGFCCRCVANYTGNGRQCVAE 40


>d2v3ia1 b.29.1.10 (A:1-434) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Trichoderma reesei, Cel7A
           [TaxId: 51453]}
          Length = 434

 Score = 27.9 bits (62), Expect = 6.8
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 14/102 (13%)

Query: 760 YYGDGYTVCRPECVRNSDCANNKACIRNKCKNPCVP--GTCGEGAIC---DVIN---HSV 811
            YG GY  C  +C R+    N +A +     +      G  G G+ C   D+      S 
Sbjct: 166 KYGTGY--CDSQCPRDLKFINGQANVEGWEPSSNNANTGIGGHGSCCSEMDIWEANSISE 223

Query: 812 VCSCPPGTTGSPFI----QCKPVIQEPVYTNPCQPSPCGPNS 849
             +  P TT    I     C     +  Y   C P  C  N 
Sbjct: 224 ALTPHPCTTVGQEICEGDGCGGTYSDNRYGGTCDPDGCDWNP 265


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.496 

Gapped
Lambda     K      H
   0.267   0.0376    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,222,632
Number of extensions: 246513
Number of successful extensions: 2084
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1626
Number of HSP's successfully gapped: 629
Length of query: 1010
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 916
Effective length of database: 1,116,976
Effective search space: 1023150016
Effective search space used: 1023150016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (27.1 bits)