BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5614
         (98 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OIG|A Chain A, The Solution Structure Of The Dpy Module From The Dumpy
          Protein
          Length = 24

 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/24 (75%), Positives = 22/24 (91%)

Query: 31 RPECVMNSECASNLACINEKCRDP 54
          RPECV+NS+C SN AC+N+KCRDP
Sbjct: 1  RPECVLNSDCPSNQACVNQKCRDP 24


>pdb|2A55|A Chain A, Solution Structure Of The Two N-Terminal Ccp Modules Of
          C4b- Binding Protein (C4bp) Alpha-Chain
          Length = 133

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 18 SCLPNYIGAPPNCRPECVMNSECASNLACINEKCRDP 54
          +CLP Y+ +       C  + E   N  CI ++CR P
Sbjct: 33 TCLPGYVRSHSTQTLTCNSDGEWVYNTFCIYKRCRHP 69


>pdb|2YGP|A Chain A, Wif Domain-Egf-Like Domain 1 Met77trp Of Human Wnt
           Inhibitory Factor 1 In Complex With
           1,2-Dipalmitoylphosphatidylcholine
          Length = 188

 Score = 25.4 bits (54), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 34  CVMNSECASNL-----ACINEKCRDP-CPGSCGYNAQCKVINHTPICTCPEGYIG 82
            VMNSE  + L     A   + C+   CPG C     C   N   IC CP+G+ G
Sbjct: 124 IVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFC---NERRICECPDGFHG 175


>pdb|2YGO|A Chain A, Wif Domain-Egf-Like Domain 1 Of Human Wnt Inhibitory
           Factor 1 In Complex With
           1,2-Dipalmitoylphosphatidylcholine
          Length = 188

 Score = 25.4 bits (54), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 34  CVMNSECASNL-----ACINEKCRDP-CPGSCGYNAQCKVINHTPICTCPEGYIG 82
            VMNSE  + L     A   + C+   CPG C     C   N   IC CP+G+ G
Sbjct: 124 IVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFC---NERRICECPDGFHG 175


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.515 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,681,161
Number of Sequences: 62578
Number of extensions: 139292
Number of successful extensions: 284
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 30
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)