RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5614
(98 letters)
>1oig_A Dumpy, CG33196-PB; structural protein; NMR {Drosophila
melanogaster} SCOP: g.3.18.1
Length = 26
Score = 31.6 bits (71), Expect = 0.003
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 31 RPECVMNSECASNLACINEKCRDP 54
RPECV+NS+C SN AC+N+KCRDP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 29.8 bits (66), Expect = 0.12
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 28 PNCRPECVMNSECASNLACINEKCRDPC-PGSCGYNAQCKVINHTPICTCPE-GYIGDPF 85
P E ++ E ++ + + G C C V++ +C C G+ G
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 86 SSC 88
S
Sbjct: 226 SQG 228
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 29.1 bits (64), Expect = 0.20
Identities = 18/93 (19%), Positives = 26/93 (27%), Gaps = 3/93 (3%)
Query: 8 QCSMQSNPSCSCLPNYIGAPPNCRPECVMNSECASNLACINEKCRDPCPGSCGYN-AQCK 66
C S C +C S C + +C C G + C+
Sbjct: 169 SCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCR 228
Query: 67 VINHTPIC--TCPEGYIGDPFSSCFPKPPERKC 97
C TCP + +P + PE K
Sbjct: 229 KFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKY 261
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 29.1 bits (65), Expect = 0.20
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 48 NEKCRDPCPGSCGYNAQC-KVINHTPICTCPEGYIGDPFSSC 88
C D P C +A C + + C C G+ G+
Sbjct: 18 QRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCG 59
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 466
Score = 27.5 bits (62), Expect = 0.75
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 22/56 (39%)
Query: 17 CSCLPNYIGAPPN---CRPEC--------VMNSEC---------ASNLACINEKCR 52
C C +Y GA PN C P C V N A A + E+
Sbjct: 22 CGCRADYFGAEPNTHTC-PVCLGLPGALPVPNRVAVEHGLRLALALG-AEVPERLV 75
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 27.2 bits (59), Expect = 0.83
Identities = 15/72 (20%), Positives = 18/72 (25%), Gaps = 1/72 (1%)
Query: 9 CSMQSNPSCSCLPNYIGAPPNCRPECVMNSECASNLACINEKCRDPCPGSCGYNAQCKVI 68
N Y+ C PEC S+ C PCP C K I
Sbjct: 263 HHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC-TPCLGPCPKVCHLLEGEKTI 321
Query: 69 NHTPICTCPEGY 80
+ G
Sbjct: 322 DSVTSAQELRGC 333
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 27.3 bits (59), Expect = 0.85
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 37 NSECASNLACINEKCRDPCPGSCGYNAQCKVINHTPICTCPEGYIGDPFSSCFPKPPERK 96
+ + +PCP C + C I+ C C GY + P +
Sbjct: 176 SQKNVPPFGLDGVYISEPCPSYCSGHGDC--ISGV--CFCDLGYTAAQGTCVSNTPNHSE 231
Query: 97 C 97
Sbjct: 232 M 232
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_A* 3k72_A*
Length = 1095
Score = 27.2 bits (59), Expect = 0.91
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 3 WLMWIQCSMQSNPSCSCLPNYIGAPPNCRPECVMNSECASNLACINEKCR 52
M ++ S NPS C I + + + + L C C
Sbjct: 963 VWMDVEVSHPQNPSLRCSSEKI---APPASDFLAHIQKNPVLDCSIAGCL 1009
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 0.97
Identities = 30/133 (22%), Positives = 40/133 (30%), Gaps = 56/133 (42%)
Query: 1 MSWLMWIQC-SMQSNPSCS--------CLPNYIGAP-P-----NCRPECV------MNSE 39
++ L +I ++ P+ S L N G P P N E V NS
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 40 CASN----LACINEKCRD------PCPGS-CGYNAQC-KVINHTPICTCPEGYIGD---- 83
+ ++ +N P P S G N K P G D
Sbjct: 360 LPAGKQVEISLVNG--AKNLVVSGP-PQSLYGLNLTLRKA-------KAPSGL--DQSRI 407
Query: 84 PFSSCFPKPPERK 96
PFS ERK
Sbjct: 408 PFS-------ERK 413
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 26.6 bits (59), Expect = 1.2
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 53 DPCPGS-CGYNAQCKVINHTPICTCPEGYIGD 83
PC C +N C+ CTC GY G
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS 37
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 26.2 bits (58), Expect = 1.8
Identities = 3/28 (10%), Positives = 8/28 (28%), Gaps = 2/28 (7%)
Query: 53 DPCPGSCGYNAQCKVINHTPICTCPEGY 80
+P + A+ + + G
Sbjct: 490 NPVRRVRSFVAEIQTFDIHGPIL--SGS 515
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 26.1 bits (56), Expect = 2.3
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 4/69 (5%)
Query: 30 CRPECVMNSECASNLACINEKCRDPCPGSCGYNAQCKVINHTPICTCPEGYIGDPFSSCF 89
R + A N D C C + +C C C E + G
Sbjct: 512 FRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRC----VQGSCVCDEQWGGLYCDEPE 567
Query: 90 PKPPERKCE 98
P + +
Sbjct: 568 TSLPTQLKD 576
Score = 25.4 bits (54), Expect = 3.8
Identities = 11/55 (20%), Positives = 13/55 (23%), Gaps = 3/55 (5%)
Query: 38 SECASNLACINEKCRDPCPGSCGYNAQCKVINHTPICTCPEGYIGDPFSSCFPKP 92
A N C C + C + C C GY G P
Sbjct: 171 GSQPVTWAIDNVYIGPQCEEMCYGHGSC---INGTKCICDPGYSGPTCKISTKNP 222
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase
inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2
PDB: 1t6g_A 2b42_A 3hd8_A
Length = 381
Score = 25.9 bits (56), Expect = 2.7
Identities = 9/61 (14%), Positives = 13/61 (21%), Gaps = 12/61 (19%)
Query: 4 LMWIQCSMQSNPSCSCLPNYIGAPPNCRPECVMNSECASNLACINEKCRDPCPGS--CGY 61
L+W C P+ + P C + C C Y
Sbjct: 34 LVWSTCDGGQPPAEIPCSS-----PTCLL-----ANAYPAPGCPAPSCGSDKHDKPCTAY 83
Query: 62 N 62
Sbjct: 84 P 84
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA
complex, ligase-RNA complex; HET: GSU; 3.37A
{Thermotoga maritima}
Length = 482
Score = 25.5 bits (57), Expect = 2.8
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 22/56 (39%)
Query: 17 CSCLPNYIGAPPN---CRPEC--------VMNSEC---------ASNLACINEKCR 52
CSC + PPN C P C V N E A N I++ R
Sbjct: 23 CSCPADVFELPPNTAIC-PVCTGQPGALPVPNEEMIRFAVKTALALN-CKIHKYSR 76
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 25.4 bits (55), Expect = 3.4
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 54 PCPGSCGYNAQCKVINHTPICTCPEGYIGDP 84
C C Q + C CP+G +
Sbjct: 279 GCQYLCLPAPQINPHSPKFTCACPDGMLLAR 309
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 25.6 bits (55), Expect = 3.5
Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 5/94 (5%)
Query: 8 QCSMQSNPSCSCLPNYIGAPPNCRPECVMNSECASNLACINEKCRDPC--PGSCGYNAQC 65
++ + + C C + C + C + +C C P C
Sbjct: 170 PATVINGQFVERCWTHSHCQKVCPTICKSHG-CTAEGLCCHSECLGNCSQPDDPTKCVAC 228
Query: 66 KVINHTPIC--TCPEGYIGDPFSSCFPKPPERKC 97
+ C TCP Y C +
Sbjct: 229 RNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDL 262
>3p5b_L Low density lipoprotein receptor variant; B-propellor,
convertase, hydrolase-lipid binding P complex; 3.30A
{Homo sapiens} PDB: 3p5c_L
Length = 400
Score = 25.6 bits (55), Expect = 3.5
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 53 DPC-PGSCGYNAQCKVINHTPICTCPEGYIGDPFSSCFPKPP 93
+ C + G + C + C CP+G+ C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDE 42
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 25.2 bits (55), Expect = 4.0
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 47 INEKCRDPCPGSCGYNAQCKVINHTPICTCPEGYIGDPFSSCFPKPPERKCE 98
INE C SCG + C + C C GY + F E C+
Sbjct: 44 INE-CATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQ 94
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 25.0 bits (54), Expect = 4.9
Identities = 8/38 (21%), Positives = 8/38 (21%), Gaps = 1/38 (2%)
Query: 49 EKCRDPC-PGSCGYNAQCKVINHTPICTCPEGYIGDPF 85
E C SC C C C P
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 219
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 24.6 bits (54), Expect = 6.1
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 51 CRDPCPGSCGYNAQCKVINHTPICTCPEGYIGDPFSSC 88
C D G+C + + + N C+ G S C
Sbjct: 41 CVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC 78
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 24.8 bits (54), Expect = 6.6
Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 4/75 (5%)
Query: 18 SCLPNYIGAPPNCRPECV-MNSECASNLACINEKCRDPCPGSCGYNAQCKVINHTP---I 73
S P C L + K + C C +C+ +TP
Sbjct: 279 SLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQAS 338
Query: 74 CTCPEGYIGDPFSSC 88
C +G SS
Sbjct: 339 CNEGKGKCYLKLSSN 353
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A
{Daucus carota} PDB: 3vlb_A
Length = 413
Score = 24.5 bits (52), Expect = 8.3
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 12/64 (18%)
Query: 2 SWLMWIQCSMQSNPSCSCLPNYIGAPPNCRPECVMNSECASNLACINEKCRDPCPGSCGY 61
+W+ C S P CR S+C+ + + C + C
Sbjct: 43 GRFLWVDCDQNYVSSTY-------RPVRCRT-----SQCSLSGSIACGDCFNGPRPGCNN 90
Query: 62 NAQC 65
N
Sbjct: 91 NTCG 94
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein;
1.91A {Glycine max}
Length = 403
Score = 24.3 bits (52), Expect = 9.5
Identities = 9/62 (14%), Positives = 15/62 (24%), Gaps = 12/62 (19%)
Query: 4 LMWIQCSMQSNPSCSCLPNYIGAPPNCRPECVMNSECASNLACINEKCRDPCPGSCGYNA 63
+W+ C + P C A+ C++ C C N
Sbjct: 46 HLWVNCE-------QQYSSKTYQAPFCHS---TQCSRANTHQCLS--CPAASRPGCHKNT 93
Query: 64 QC 65
Sbjct: 94 CG 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.515
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,538,846
Number of extensions: 80760
Number of successful extensions: 692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 531
Number of HSP's successfully gapped: 320
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)