RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5614
         (98 letters)



>d1oiga_ g.3.18.1 (A:) Dumpy {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 26

 Score = 31.6 bits (71), Expect = 0.001
 Identities = 18/24 (75%), Positives = 22/24 (91%)

Query: 31 RPECVMNSECASNLACINEKCRDP 54
          RPECV+NS+C SN AC+N+KCRDP
Sbjct: 1  RPECVLNSDCPSNQACVNQKCRDP 24


>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 40

 Score = 22.5 bits (48), Expect = 4.2
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 59 CGYNAQCKVINHTPICTCPEGYIGD 83
          C  +A+C+       C C   Y G+
Sbjct: 9  CSVHAECRDYATGFCCRCVANYTGN 33


>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
          IIa) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 48

 Score = 22.5 bits (48), Expect = 5.1
 Identities = 8/33 (24%), Positives = 11/33 (33%)

Query: 51 CRDPCPGSCGYNAQCKVINHTPICTCPEGYIGD 83
             PC   C  +  C     +  C C  G+ G 
Sbjct: 7  LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 39


>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme)
           {Plasmodium vivax [TaxId: 5855]}
          Length = 373

 Score = 23.4 bits (49), Expect = 8.0
 Identities = 5/22 (22%), Positives = 9/22 (40%)

Query: 2   SWLMWIQCSMQSNPSCSCLPNY 23
           S  +W+     ++  CS    Y
Sbjct: 83  SANLWVPSKKCNSSGCSIKNLY 104


>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces
          cerevisiae), proteinase A [TaxId: 4932]}
          Length = 329

 Score = 23.0 bits (48), Expect = 8.8
 Identities = 4/22 (18%), Positives = 9/22 (40%)

Query: 2  SWLMWIQCSMQSNPSCSCLPNY 23
          S  +W+  +   + +C     Y
Sbjct: 36 SSNLWVPSNECGSLACFLHSKY 57


>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus
          (Endothia parasitica) [TaxId: 5116]}
          Length = 330

 Score = 23.0 bits (48), Expect = 8.8
 Identities = 4/22 (18%), Positives = 7/22 (31%)

Query: 2  SWLMWIQCSMQSNPSCSCLPNY 23
          S  +W+  S  +         Y
Sbjct: 38 SSDLWVFSSETTASEVDGQTIY 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.515 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 426,737
Number of extensions: 20751
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 125
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)