Query psy5619
Match_columns 66
No_of_seqs 103 out of 293
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 22:18:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rr8_A Iqgap1 protein; F-actin 98.5 1.5E-08 5.1E-13 68.7 1.1 35 15-49 144-182 (190)
2 1wyn_A Calponin-2; CH domain, 97.8 4.4E-06 1.5E-10 54.5 1.1 28 2-30 117-145 (146)
3 1p5s_A RAS GTPase-activating-l 97.1 0.00011 3.9E-09 50.1 0.9 32 15-56 165-197 (203)
4 1p2x_A RNG2 protein, RAS GTPas 96.9 0.00023 7.7E-09 46.8 0.8 30 15-44 121-154 (159)
5 1wym_A Transgelin-2; CH domain 95.1 0.0083 2.8E-07 39.1 1.6 23 2-26 126-153 (155)
6 1ujo_A Transgelin; CH domain, 83.2 0.3 1E-05 31.2 0.6 21 2-22 119-142 (144)
7 1wyp_A Calponin 1; CH domain, 70.8 1.6 5.6E-05 27.4 1.3 12 11-22 124-135 (136)
8 3i6x_A P195, RAS GTPase-activa 62.8 2.8 9.6E-05 28.0 1.3 20 17-36 168-188 (193)
9 3neh_A Renal dipeptidase famil 15.7 76 0.0026 22.5 2.0 23 22-44 202-227 (318)
10 1ytr_A Bacteriocin plantaricin 9.4 75 0.0026 15.0 0.2 10 37-46 3-12 (26)
No 1
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=98.54 E-value=1.5e-08 Score=68.70 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=31.7
Q ss_pred cCccCCcc-ccccCcHHHHhcccCe---eeecccccccc
Q psy5619 15 LGPKPSEE-NKRFFTEDQLRAGEGM---IGLQAGTNKLA 49 (66)
Q Consensus 15 ~G~K~a~k-~~R~fteeql~~g~~i---i~LQ~GtNk~A 49 (66)
+||+.+++ ++|+||||||++|+.+ ||||||++...
T Consensus 144 ~~P~~~~~~~~r~Fteeql~~~~~~l~~~glqm~~f~~~ 182 (190)
T 2rr8_A 144 LAPQIQDLYGKVDFTEEEINNMKTELEKYGIQMPAFSKI 182 (190)
T ss_dssp CCCCCCCCTTSSCCCHHHHHHHHHHHHHSCCCCCCGGGC
T ss_pred CCCCccccccCCCCCHHHHHHHHHHHHhhccCCCcchhH
Confidence 68888887 9999999999999999 99999998653
No 2
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=97.82 E-value=4.4e-06 Score=54.47 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=23.8
Q ss_pred cccccCCCC-CCCccCccCCccccccCcHH
Q psy5619 2 DECYKHPEF-RGPFLGPKPSEENKRFFTED 30 (66)
Q Consensus 2 ~~~~~~~~~-~gp~~G~K~a~k~~R~ftee 30 (66)
+.|+++ ++ .||.||||+|++|+|+|||+
T Consensus 117 ~~a~~~-g~~~~p~~g~k~a~~~~r~f~e~ 145 (146)
T 1wyn_A 117 GKAKTK-GLQSGVDIGVKYSEKQERSGPSS 145 (146)
T ss_dssp HHHGGG-TSCCCSCCCCCCCCCCCCCSSCC
T ss_pred HHHHhC-CCCCCCccceeccccCCCCCCCC
Confidence 456666 55 89999999999999999975
No 3
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=97.10 E-value=0.00011 Score=50.13 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=27.1
Q ss_pred cCccCCcc-ccccCcHHHHhcccCeeeecccccccccccCCCC
Q psy5619 15 LGPKPSEE-NKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNF 56 (66)
Q Consensus 15 ~G~K~a~k-~~R~fteeql~~g~~ii~LQ~GtNk~ASQ~Gmt~ 56 (66)
++|+..+. ++|+|+||+|++ +|+.++|+||++
T Consensus 165 ~~p~l~~l~~~~~Fseeql~~----------~n~~l~q~G~~~ 197 (203)
T 1p5s_A 165 LAPPLIKSDENLSFTDEDVSI----------IVRRLRQSNVIL 197 (203)
T ss_dssp SSCCCCCCCTTCCCCHHHHHH----------HHHHHHHCCCCC
T ss_pred CCCchhhhcccCCCCHHHHHH----------HHHHHHHcCCCC
Confidence 46777764 889999999999 799999999973
No 4
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=96.88 E-value=0.00023 Score=46.79 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=24.5
Q ss_pred cCccCCcc-ccccCcHHHHhcccCee---eeccc
Q psy5619 15 LGPKPSEE-NKRFFTEDQLRAGEGMI---GLQAG 44 (66)
Q Consensus 15 ~G~K~a~k-~~R~fteeql~~g~~ii---~LQ~G 44 (66)
+||+.++. ++|+||+|||++++..+ |+||.
T Consensus 121 ~~p~~~~~~~~~~fseeql~~~~~~l~~~g~~~~ 154 (159)
T 1p2x_A 121 LAPPLIKSDENLSFTDEDVSIIVRRLRQSNVILP 154 (159)
T ss_dssp SSCCCCCCCTTCCCCHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCchhhhccCCCCHHHHHHHHHHHHHcCCCCC
Confidence 57777755 89999999999999988 66643
No 5
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=95.07 E-value=0.0083 Score=39.08 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=18.0
Q ss_pred cccccCCCCCCCccC-----ccCCcccccc
Q psy5619 2 DECYKHPEFRGPFLG-----PKPSEENKRF 26 (66)
Q Consensus 2 ~~~~~~~~~~gp~~G-----~K~a~k~~R~ 26 (66)
+.|+++ ++ ||.+| ||+|++|+|+
T Consensus 126 ~~a~~~-~~-gp~~g~p~~~~k~a~~n~r~ 153 (155)
T 1wym_A 126 GLAVAR-DD-GLFSGDPNWFPKKSKESGPS 153 (155)
T ss_dssp HHHTTC-SS-SCCCSCSSSSCCCCCCCCSS
T ss_pred HHHHHC-CC-CCcCCCCCCCCcccccCCCC
Confidence 456777 45 77776 9999999997
No 6
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=83.18 E-value=0.3 Score=31.19 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.1
Q ss_pred cccccCC--CCCC-CccCccCCcc
Q psy5619 2 DECYKHP--EFRG-PFLGPKPSEE 22 (66)
Q Consensus 2 ~~~~~~~--~~~g-p~~G~K~a~k 22 (66)
+.|++++ .|.| |.||||++..
T Consensus 119 ~~a~~~~~~~~~g~P~~~~k~~~~ 142 (144)
T 1ujo_A 119 SLAVTKNDGNYRGDPNWFMKSGPS 142 (144)
T ss_dssp HHHHHHCSSCCSSCSTTTCSSSCC
T ss_pred HHHHHcCCCCcCCCCCCCcccCCC
Confidence 3455554 8999 9999999864
No 7
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=70.76 E-value=1.6 Score=27.44 Aligned_cols=12 Identities=8% Similarity=0.008 Sum_probs=10.9
Q ss_pred CCCccCccCCcc
Q psy5619 11 RGPFLGPKPSEE 22 (66)
Q Consensus 11 ~gp~~G~K~a~k 22 (66)
+||.+|||+|++
T Consensus 124 ~~p~~g~k~a~~ 135 (136)
T 1wyp_A 124 NKVNVGVSGPSS 135 (136)
T ss_dssp CCCCCCCCSCCC
T ss_pred CCCcCccccccc
Confidence 689999999986
No 8
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=62.81 E-value=2.8 Score=28.04 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=14.5
Q ss_pred ccCCc-cccccCcHHHHhccc
Q psy5619 17 PKPSE-ENKRFFTEDQLRAGE 36 (66)
Q Consensus 17 ~K~a~-k~~R~fteeql~~g~ 36 (66)
|+... .++++||+|+|++.+
T Consensus 168 P~i~~l~g~~~Ft~eei~~~~ 188 (193)
T 3i6x_A 168 PQIQDLYGKVDFTEEEINNMK 188 (193)
T ss_dssp CCCCCCTTTCCCCHHHHHHHH
T ss_pred CCcccccCCCCcCHHHHHHHH
Confidence 34444 359999999998765
No 9
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=15.67 E-value=76 Score=22.52 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=18.4
Q ss_pred cccccCcHHHHhc---ccCeeeeccc
Q psy5619 22 ENKRFFTEDQLRA---GEGMIGLQAG 44 (66)
Q Consensus 22 k~~R~fteeql~~---g~~ii~LQ~G 44 (66)
.++|++++++|++ ..++|++-+-
T Consensus 202 ~h~RNl~D~~l~ala~~GGvigv~~~ 227 (318)
T 3neh_A 202 SHPRNLDDEQIKAMIEHDAMIHVVFY 227 (318)
T ss_dssp CCTTSBCHHHHHHHHHTTCEEEECCC
T ss_pred CCCCCCCHHHHHHHHHcCCEEEEEee
Confidence 5799999999876 5688888653
No 10
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=9.38 E-value=75 Score=14.99 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=6.7
Q ss_pred Ceeeeccccc
Q psy5619 37 GMIGLQAGTN 46 (66)
Q Consensus 37 ~ii~LQ~GtN 46 (66)
+..+||||..
T Consensus 3 sayslqmgat 12 (26)
T 1ytr_A 3 SAYSLQMGAT 12 (26)
T ss_dssp SCCCCCSSSH
T ss_pred chHHHHhhHH
Confidence 3457899854
Done!