RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5619
         (66 letters)



>gnl|CDD|227526 COG5199, SCP1, Calponin [Cytoskeleton].
          Length = 178

 Score = 41.1 bits (96), Expect = 5e-06
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 6   KHPEFRGPFLGPKPSEENKRFFT-EDQLRAGEGMIGLQAGTNKLASQSGQ 54
           +   F GPFLGP  + +  R F+ ++ L   +G I LQ G + L+ QS +
Sbjct: 119 ERM-FSGPFLGPHLATKKPRVFSSQEVLDRSKGAIHLQYGYSDLSEQSTE 167


>gnl|CDD|109460 pfam00402, Calponin, Calponin family repeat. 
          Length = 26

 Score = 32.8 bits (75), Expect = 7e-04
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 39 IGLQAGTNKLASQSGQN-FGATRKII 63
          + LQ GTNK ASQ G   +G  R+I 
Sbjct: 1  LSLQMGTNKGASQKGMTAYGLPRQIY 26


>gnl|CDD|234238 TIGR03508, decahem_SO, decaheme c-type cytochrome, DmsE family.
           Members of this family are small, decaheme c-type
           cytochromes, related DmsE of Shewanella oneidensis MR-1,
           which has been shown to be part of an anaerobic dimethyl
           sulfoxide reductase.
          Length = 258

 Score = 27.0 bits (60), Expect = 0.62
 Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 1/15 (6%)

Query: 2   DECYK-HPEFRGPFL 15
           + CYK H E RGPFL
Sbjct: 168 ETCYKCHAEKRGPFL 182


>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative)
           Hydrophobe/Amphiphile Efflux-3 (HAE3) Family.
           Characterized members of the RND superfamily all
           probably catalyze substrate efflux via an H+ antiport
           mechanism. These proteins are found ubiquitously in
           bacteria, archaea and eukaryotes. They fall into seven
           phylogenetic families, this family (2.A.6.7) consists of
           uncharacterised putative transporters, largely in the
           Archaea [Transport and binding proteins, Unknown
           substrate].
          Length = 719

 Score = 25.6 bits (56), Expect = 2.3
 Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 10/62 (16%)

Query: 3   ECYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKI 62
           E    P      L P P +E   + +  Q++     + L         Q         + 
Sbjct: 484 EVEGLPAPERSALEPIPEDEEGGYISGGQIKVAVIQVQL--------KQGE--PKVQGRK 533

Query: 63  IL 64
           IL
Sbjct: 534 IL 535


>gnl|CDD|236928 PRK11552, PRK11552, putative DNA-binding transcriptional
          regulator; Provisional.
          Length = 225

 Score = 25.0 bits (55), Expect = 2.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 37 GMIGLQAGTNKLASQSGQNFGA 58
          G  GL A T  +A+Q+GQN  A
Sbjct: 27 GEYGLHATTRDIAAQAGQNIAA 48


>gnl|CDD|225135 COG2225, AceB, Malate synthase [Energy production and conversion].
          Length = 545

 Score = 24.3 bits (53), Expect = 5.2
 Identities = 8/23 (34%), Positives = 9/23 (39%)

Query: 27  FTEDQLRAGEGMIGLQAGTNKLA 49
           F  D     E  +GL  GT K  
Sbjct: 235 FWNDVFSRVEDTLGLPRGTIKAT 257


>gnl|CDD|193518 cd05639, M18, M18 Peptidase aminopeptidase family.  Peptidase M18
           aminopeptidase family is widely distributed in bacteria
           and eukaryotes, but only the yeast aminopeptidase I and
           mammalian aspartyl aminopeptidase have been
           characterized to date. Yeast aminopeptidase I is active
           only in its dodecameric form with broad substrate
           specificity, acting on N-terminal leucine and most other
           amino acids. In contrast, the mammalian aspartyl
           aminopeptidase is highly selective for hydrolysis of
           N-terminal Asp or Glu residues from peptides. These
           enzymes have two catalytic zinc ions at the active site.
          Length = 427

 Score = 24.0 bits (52), Expect = 6.5
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 3/28 (10%)

Query: 8   PEFRGPFLGP---KPSEENKRFFTEDQL 32
           P FR P L P   +   EN  F  ED L
Sbjct: 141 PVFRIPDLAPHLDRQINENFEFNKEDNL 168


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0674    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,302,521
Number of extensions: 233569
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 7
Length of query: 66
Length of database: 10,937,602
Length adjustment: 37
Effective length of query: 29
Effective length of database: 9,296,504
Effective search space: 269598616
Effective search space used: 269598616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)