RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5619
         (66 letters)



>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural
           genomics, NPPSFA, riken structural genomics/proteomics
           initiative, RSGI; NMR {Homo sapiens}
          Length = 146

 Score = 39.5 bits (92), Expect = 9e-06
 Identities = 6/26 (23%), Positives = 9/26 (34%)

Query: 4   CYKHPEFRGPFLGPKPSEENKRFFTE 29
                   G  +G K SE+ +R    
Sbjct: 119 AKTKGLQSGVDIGVKYSEKQERSGPS 144


>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo
           sapiens}
          Length = 190

 Score = 31.5 bits (71), Expect = 0.010
 Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 4/32 (12%)

Query: 15  LGPKPSE-ENKRFFTEDQLRAGEGMI---GLQ 42
           L P+  +   K  FTE+++   +  +   G+Q
Sbjct: 144 LAPQIQDLYGKVDFTEEEINNMKTELEKYGIQ 175


>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
           calmodulin-binding, cell membrane, membrane,
           phosphoprotein, protein binding; 2.50A {Homo sapiens}
          Length = 193

 Score = 30.8 bits (69), Expect = 0.016
 Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 15  LGPKPSE-ENKRFFTEDQLRAGEGMI 39
           L P+  +   K  FTE+++   +  +
Sbjct: 166 LAPQIQDLYGKVDFTEEEINNMKTEL 191


>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle,
           protein binding; 2.21A {Schizosaccharomyces pombe} SCOP:
           a.40.1.1
          Length = 159

 Score = 29.8 bits (67), Expect = 0.037
 Identities = 3/30 (10%), Positives = 8/30 (26%)

Query: 10  FRGPFLGPKPSEENKRFFTEDQLRAGEGMI 39
                  P    +    FT++ +      +
Sbjct: 117 SMQDLAPPLIKSDENLSFTDEDVSIIVRRL 146


>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
           cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
           a.40.1.1
          Length = 203

 Score = 28.4 bits (63), Expect = 0.11
 Identities = 3/27 (11%), Positives = 7/27 (25%)

Query: 10  FRGPFLGPKPSEENKRFFTEDQLRAGE 36
                  P    +    FT++ +    
Sbjct: 161 SMQDLAPPLIKSDENLSFTDEDVSIIV 187


>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus
          pyogenes} PDB: 3eif_A*
          Length = 926

 Score = 24.6 bits (53), Expect = 2.4
 Identities = 2/17 (11%), Positives = 4/17 (23%)

Query: 5  YKHPEFRGPFLGPKPSE 21
            H  +R         +
Sbjct: 30 KNHEAWRLTDKTKARYQ 46


>1a0s_P Sucrose-specific porin; outer membrane protein; 2.40A {Salmonella
           typhimurium} SCOP: f.4.3.2 PDB: 1a0t_P* 1oh2_P* 1oh2_Q*
          Length = 413

 Score = 24.7 bits (53), Expect = 3.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 36  EGMIGLQAGTNKLASQSGQNFGA 58
           +   GL+ G++K A   G   GA
Sbjct: 227 DSFYGLRDGSSKTALLYGHGLGA 249


>3s5q_A Putative glycosylhydrolase; concanavalin A-like lectins/glucanases,
           structural genomics, center for structural genomics,
           JCSG; 1.85A {Parabacteroides distasonis}
          Length = 214

 Score = 24.1 bits (52), Expect = 3.5
 Identities = 7/38 (18%), Positives = 12/38 (31%)

Query: 5   YKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQ 42
               ++      P  +E  +           +G IGLQ
Sbjct: 159 ANLADWTSGTTNPDGTEIPEWLPIPYANMPTKGYIGLQ 196


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 958,184
Number of extensions: 41260
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 9
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)