RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5619
         (66 letters)



>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
           {Fission yeast (Schizosaccharomyces pombe) [TaxId:
           4896]}
          Length = 159

 Score = 31.5 bits (71), Expect = 0.003
 Identities = 3/27 (11%), Positives = 7/27 (25%)

Query: 10  FRGPFLGPKPSEENKRFFTEDQLRAGE 36
                  P    +    FT++ +    
Sbjct: 117 SMQDLAPPLIKSDENLSFTDEDVSIIV 143


>d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium
           (Salmonella typhimurium) [TaxId: 90371]}
          Length = 413

 Score = 23.0 bits (49), Expect = 3.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 40  GLQAGTNKLASQSGQNFGAT 59
           GL+ G++K A   G   GA 
Sbjct: 231 GLRDGSSKTALLYGHGLGAE 250


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 230,502
Number of extensions: 7698
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 2
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)