Query psy5620
Match_columns 72
No_of_seqs 104 out of 310
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 22:20:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rr8_A Iqgap1 protein; F-actin 99.2 9E-12 3.1E-16 84.5 3.2 49 1-55 130-182 (190)
2 1wyn_A Calponin-2; CH domain, 99.0 2.2E-10 7.5E-15 74.9 2.8 36 1-36 110-145 (146)
3 1p5s_A RAS GTPase-activating-l 98.5 6.6E-08 2.3E-12 66.1 2.9 44 2-61 152-196 (203)
4 1p2x_A RNG2 protein, RAS GTPas 98.4 1.4E-07 4.7E-12 62.2 2.6 42 2-49 108-153 (159)
5 1wym_A Transgelin-2; CH domain 98.0 3.5E-06 1.2E-10 55.2 2.9 30 1-32 119-153 (155)
6 1wyp_A Calponin 1; CH domain, 97.6 2.8E-05 9.6E-10 49.9 2.2 26 1-28 110-135 (136)
7 1ujo_A Transgelin; CH domain, 97.4 9.1E-05 3.1E-09 47.9 2.6 28 1-28 112-142 (144)
8 3i6x_A P195, RAS GTPase-activa 96.5 0.0019 6.5E-08 43.6 3.2 37 1-42 152-188 (193)
9 3neh_A Renal dipeptidase famil 16.5 70 0.0024 22.6 2.0 23 27-49 201-226 (318)
10 2o5g_B CAM, smooth muscle myos 12.3 82 0.0028 14.7 0.9 10 2-11 12-21 (26)
No 1
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=99.18 E-value=9e-12 Score=84.47 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=43.7
Q ss_pred ChhhhHhHHHhhCCCCCCCccCccCCcc-ccCcccHHHHhcccCe---eeecccccccc
Q psy5620 1 MTIFALGRTCYKHPEFRGPFLGPKPSEE-NKRFFTEDQLRAGEGM---IGLQAGTNKLA 55 (72)
Q Consensus 1 ~tL~aLg~~a~~~~~~~gp~~g~K~a~k-n~R~fteeqlk~g~~~---i~lq~Gtnk~a 55 (72)
.||+||++.|++++ +||+.+++ ++|+|+||+|++++.+ ||||||++...
T Consensus 130 ~cL~aL~~~a~~~g------~~P~~~~~~~~r~Fteeql~~~~~~l~~~glqm~~f~~~ 182 (190)
T 2rr8_A 130 YCIHALSLYLFKLG------LAPQIQDLYGKVDFTEEEINNMKTELEKYGIQMPAFSKI 182 (190)
T ss_dssp HHHHHHHHHHHHSS------CCCCCCCCTTSSCCCHHHHHHHHHHHHHSCCCCCCGGGC
T ss_pred HHHHHHHHHHHHCC------CCCCccccccCCCCCHHHHHHHHHHHHhhccCCCcchhH
Confidence 39999999999985 57888887 9999999999999999 99999988653
No 2
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=98.97 E-value=2.2e-10 Score=74.89 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=33.2
Q ss_pred ChhhhHhHHHhhCCCCCCCccCccCCccccCcccHH
Q psy5620 1 MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTED 36 (72)
Q Consensus 1 ~tL~aLg~~a~~~~~~~gp~~g~K~a~kn~R~ftee 36 (72)
.||+||++.|++++.+.||.||||+|++|+|+|||+
T Consensus 110 ~cL~aL~~~a~~~g~~~~p~~g~k~a~~~~r~f~e~ 145 (146)
T 1wyn_A 110 VSLLALAGKAKTKGLQSGVDIGVKYSEKQERSGPSS 145 (146)
T ss_dssp HHHHHHHHHHGGGTSCCCSCCCCCCCCCCCCCSSCC
T ss_pred HHHHHHHHHHHhCCCCCCCccceeccccCCCCCCCC
Confidence 389999999999976689999999999999999985
No 3
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.47 E-value=6.6e-08 Score=66.14 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=38.0
Q ss_pred hhhhHhHHHhhCCCCCCCccCccCCcc-ccCcccHHHHhcccCeeeeccccccccccCCCC
Q psy5620 2 TIFALGRTCYKHPEFRGPFLGPKPSEE-NKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN 61 (72)
Q Consensus 2 tL~aLg~~a~~~~~~~gp~~g~K~a~k-n~R~fteeqlk~g~~~i~lq~Gtnk~asQ~gm~ 61 (72)
||+||++.+++++ ++|+..+. ++|+|+||+|++ +|+.++|+||+
T Consensus 152 ~L~aL~~~a~~~g------~~p~l~~l~~~~~Fseeql~~----------~n~~l~q~G~~ 196 (203)
T 1p5s_A 152 CIHALSYFLSMQD------LAPPLIKSDENLSFTDEDVSI----------IVRRLRQSNVI 196 (203)
T ss_dssp HHHHHHHHHHHTT------SSCCCCCCCTTCCCCHHHHHH----------HHHHHHHCCCC
T ss_pred HHHHHHHHHhhcC------CCCchhhhcccCCCCHHHHHH----------HHHHHHHcCCC
Confidence 8999999999885 35666664 889999999999 79999999976
No 4
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.38 E-value=1.4e-07 Score=62.20 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=35.5
Q ss_pred hhhhHhHHHhhCCCCCCCccCccCCcc-ccCcccHHHHhcccCee---eecc
Q psy5620 2 TIFALGRTCYKHPEFRGPFLGPKPSEE-NKRFFTEDQLRAGEGMI---GLQA 49 (72)
Q Consensus 2 tL~aLg~~a~~~~~~~gp~~g~K~a~k-n~R~fteeqlk~g~~~i---~lq~ 49 (72)
||+||++.+.+++ +||+.++. ++|+|++|||++++..+ |+||
T Consensus 108 ~L~aL~~~~~~~g------~~p~~~~~~~~~~fseeql~~~~~~l~~~g~~~ 153 (159)
T 1p2x_A 108 CIHALSYFLSMQD------LAPPLIKSDENLSFTDEDVSIIVRRLRQSNVIL 153 (159)
T ss_dssp HHHHHHHHHHTTT------SSCCCCCCCTTCCCCHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhhCC------CCCCchhhhccCCCCHHHHHHHHHHHHHcCCCC
Confidence 8999999998875 46777655 89999999999999888 6665
No 5
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=3.5e-06 Score=55.24 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=25.7
Q ss_pred ChhhhHhHHHhhCCCCCCCccC-----ccCCccccCc
Q psy5620 1 MTIFALGRTCYKHPEFRGPFLG-----PKPSEENKRF 32 (72)
Q Consensus 1 ~tL~aLg~~a~~~~~~~gp~~g-----~K~a~kn~R~ 32 (72)
.||+||++.|++++. ||.+| ||+|++|+|+
T Consensus 119 ~cL~aL~~~a~~~~~--gp~~g~p~~~~k~a~~n~r~ 153 (155)
T 1wym_A 119 RTLMNLGGLAVARDD--GLFSGDPNWFPKKSKESGPS 153 (155)
T ss_dssp HHHHHHHHHHTTCSS--SCCCSCSSSSCCCCCCCCSS
T ss_pred HHHHHHHHHHHHCCC--CCcCCCCCCCCcccccCCCC
Confidence 389999999999863 66666 9999999997
No 6
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=97.58 E-value=2.8e-05 Score=49.88 Aligned_cols=26 Identities=15% Similarity=0.127 Sum_probs=23.9
Q ss_pred ChhhhHhHHHhhCCCCCCCccCccCCcc
Q psy5620 1 MTIFALGRTCYKHPEFRGPFLGPKPSEE 28 (72)
Q Consensus 1 ~tL~aLg~~a~~~~~~~gp~~g~K~a~k 28 (72)
.||+||++.|++++ .||.||||+|++
T Consensus 110 ~cL~aL~~~a~~~g--~~p~~g~k~a~~ 135 (136)
T 1wyp_A 110 STLLALASMAKTKG--NKVNVGVSGPSS 135 (136)
T ss_dssp HHHHHHHHHHHHHT--CCCCCCCCSCCC
T ss_pred HHHHHHHHHHHHCC--CCCcCccccccc
Confidence 38999999999987 799999999986
No 7
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=97.37 E-value=9.1e-05 Score=47.89 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.9
Q ss_pred ChhhhHhHHHhhCC--CCCC-CccCccCCcc
Q psy5620 1 MTIFALGRTCYKHP--EFRG-PFLGPKPSEE 28 (72)
Q Consensus 1 ~tL~aLg~~a~~~~--~~~g-p~~g~K~a~k 28 (72)
.||+||++.|.+++ .|.| |.||||++..
T Consensus 112 ~cL~aL~~~a~~~~~~~~~g~P~~~~k~~~~ 142 (144)
T 1ujo_A 112 RTLMALGSLAVTKNDGNYRGDPNWFMKSGPS 142 (144)
T ss_dssp HHHHHHHHHHHHHCSSCCSSCSTTTCSSSCC
T ss_pred HHHHHHHHHHHHcCCCCcCCCCCCCcccCCC
Confidence 38999999999876 7999 9999999875
No 8
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=96.50 E-value=0.0019 Score=43.64 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=28.7
Q ss_pred ChhhhHhHHHhhCCCCCCCccCccCCccccCcccHHHHhccc
Q psy5620 1 MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGE 42 (72)
Q Consensus 1 ~tL~aLg~~a~~~~~~~gp~~g~K~a~kn~R~fteeqlk~g~ 42 (72)
.||+||++.+.+++ + .|.|.... ++++|++|++++.+
T Consensus 152 ~cL~aL~~~a~~~G-~-~P~i~~l~---g~~~Ft~eei~~~~ 188 (193)
T 3i6x_A 152 YCIHALSLYLFKLG-L-APQIQDLY---GKVDFTEEEINNMK 188 (193)
T ss_dssp HHHHHHHHHHHHTT-S-SCCCCCCT---TTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhCC-C-CCCccccc---CCCCcCHHHHHHHH
Confidence 39999999999985 2 36555433 58999999999865
No 9
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=16.54 E-value=70 Score=22.62 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=18.5
Q ss_pred ccccCcccHHHHhc---ccCeeeecc
Q psy5620 27 EENKRFFTEDQLRA---GEGMIGLQA 49 (72)
Q Consensus 27 ~kn~R~fteeqlk~---g~~~i~lq~ 49 (72)
-.++|+.++|+|++ ..++|++-+
T Consensus 201 ~~h~RNl~D~~l~ala~~GGvigv~~ 226 (318)
T 3neh_A 201 CSHPRNLDDEQIKAMIEHDAMIHVVF 226 (318)
T ss_dssp SCCTTSBCHHHHHHHHHTTCEEEECC
T ss_pred CCCCCCCCHHHHHHHHHcCCEEEEEe
Confidence 35799999999987 568888765
No 10
>2o5g_B CAM, smooth muscle myosin light chain kinase peptide; protein-peptide complex, metal binding protein; 1.08A {Gallus gallus}
Probab=12.25 E-value=82 Score=14.68 Aligned_cols=10 Identities=30% Similarity=0.531 Sum_probs=7.4
Q ss_pred hhhhHhHHHh
Q psy5620 2 TIFALGRTCY 11 (72)
Q Consensus 2 tL~aLg~~a~ 11 (72)
++.||+|++-
T Consensus 12 Av~Al~Rma~ 21 (26)
T 2o5g_B 12 AVRAIGRLSX 21 (26)
T ss_pred HHHHHHHHhc
Confidence 5788888763
Done!