RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5620
(72 letters)
>gnl|CDD|227526 COG5199, SCP1, Calponin [Cytoskeleton].
Length = 178
Score = 46.5 bits (110), Expect = 6e-08
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 2 TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFT-EDQLRAGEGMIGLQAGTNKLASQSGQ 60
+++L R K F GPFLGP + + R F+ ++ L +G I LQ G + L+ QS +
Sbjct: 108 CLYSLSRYAQKERMFSGPFLGPHLATKKPRVFSSQEVLDRSKGAIHLQYGYSDLSEQSTE 167
>gnl|CDD|109460 pfam00402, Calponin, Calponin family repeat.
Length = 26
Score = 32.0 bits (73), Expect = 0.002
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 45 IGLQAGTNKLASQSGQN-FGATRKII 69
+ LQ GTNK ASQ G +G R+I
Sbjct: 1 LSLQMGTNKGASQKGMTAYGLPRQIY 26
>gnl|CDD|234238 TIGR03508, decahem_SO, decaheme c-type cytochrome, DmsE family.
Members of this family are small, decaheme c-type
cytochromes, related DmsE of Shewanella oneidensis MR-1,
which has been shown to be part of an anaerobic dimethyl
sulfoxide reductase.
Length = 258
Score = 30.1 bits (68), Expect = 0.051
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 4 FALGRTCYK-HPEFRGPFL 21
L TCYK H E RGPFL
Sbjct: 164 TTLNETCYKCHAEKRGPFL 182
>gnl|CDD|99984 cd03813, GT1_like_3, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria, while some of them are also found in
Archaea and eukaryotes.
Length = 475
Score = 25.7 bits (57), Expect = 2.5
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 3 IFALGRTCYKHPEFRGPFLGPKPSEE 28
I A K P+ G +GP +
Sbjct: 312 IRAAAIVRKKIPDAEGWVIGPTDEDP 337
>gnl|CDD|236928 PRK11552, PRK11552, putative DNA-binding transcriptional
regulator; Provisional.
Length = 225
Score = 24.6 bits (54), Expect = 4.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 43 GMIGLQAGTNKLASQSGQNFGA 64
G GL A T +A+Q+GQN A
Sbjct: 27 GEYGLHATTRDIAAQAGQNIAA 48
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative)
Hydrophobe/Amphiphile Efflux-3 (HAE3) Family.
Characterized members of the RND superfamily all
probably catalyze substrate efflux via an H+ antiport
mechanism. These proteins are found ubiquitously in
bacteria, archaea and eukaryotes. They fall into seven
phylogenetic families, this family (2.A.6.7) consists of
uncharacterised putative transporters, largely in the
Archaea [Transport and binding proteins, Unknown
substrate].
Length = 719
Score = 24.8 bits (54), Expect = 4.9
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 2 TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAG 50
+I L + P L P P +E + + Q++ + L+ G
Sbjct: 477 SIIDLVKEVEGLPAPERSALEPIPEDEEGGYISGGQIKVAVIQVQLKQG 525
>gnl|CDD|225135 COG2225, AceB, Malate synthase [Energy production and conversion].
Length = 545
Score = 24.3 bits (53), Expect = 6.3
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 33 FTEDQLRAGEGMIGLQAGTNKLA 55
F D E +GL GT K
Sbjct: 235 FWNDVFSRVEDTLGLPRGTIKAT 257
>gnl|CDD|193518 cd05639, M18, M18 Peptidase aminopeptidase family. Peptidase M18
aminopeptidase family is widely distributed in bacteria
and eukaryotes, but only the yeast aminopeptidase I and
mammalian aspartyl aminopeptidase have been
characterized to date. Yeast aminopeptidase I is active
only in its dodecameric form with broad substrate
specificity, acting on N-terminal leucine and most other
amino acids. In contrast, the mammalian aspartyl
aminopeptidase is highly selective for hydrolysis of
N-terminal Asp or Glu residues from peptides. These
enzymes have two catalytic zinc ions at the active site.
Length = 427
Score = 24.3 bits (53), Expect = 7.1
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 14 PEFRGPFLGP---KPSEENKRFFTEDQL 38
P FR P L P + EN F ED L
Sbjct: 141 PVFRIPDLAPHLDRQINENFEFNKEDNL 168
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.413
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,631,712
Number of extensions: 268326
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 8
Length of query: 72
Length of database: 10,937,602
Length adjustment: 42
Effective length of query: 30
Effective length of database: 9,074,734
Effective search space: 272242020
Effective search space used: 272242020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)