RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5620
         (72 letters)



>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural
           genomics, NPPSFA, riken structural genomics/proteomics
           initiative, RSGI; NMR {Homo sapiens}
          Length = 146

 Score = 51.0 bits (122), Expect = 4e-10
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTE 35
           ++ AL           G  +G K SE+ +R    
Sbjct: 111 SLLALAGKAKTKGLQSGVDIGVKYSEKQERSGPS 144


>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo
           sapiens}
          Length = 190

 Score = 42.6 bits (100), Expect = 9e-07
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 10/51 (19%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSE-ENKRFFTEDQLRAGEGMI---GLQ 48
            I AL    +K        L P+  +   K  FTE+++   +  +   G+Q
Sbjct: 131 CIHALSLYLFKLG------LAPQIQDLYGKVDFTEEEINNMKTELEKYGIQ 175


>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
           calmodulin-binding, cell membrane, membrane,
           phosphoprotein, protein binding; 2.50A {Homo sapiens}
          Length = 193

 Score = 42.3 bits (99), Expect = 1e-06
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 7/45 (15%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSE-ENKRFFTEDQLRAGEGMI 45
            I AL    +K        L P+  +   K  FTE+++   +  +
Sbjct: 153 CIHALSLYLFKLG------LAPQIQDLYGKVDFTEEEINNMKTEL 191


>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle,
           protein binding; 2.21A {Schizosaccharomyces pombe} SCOP:
           a.40.1.1
          Length = 159

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 6/44 (13%), Positives = 11/44 (25%), Gaps = 5/44 (11%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMI 45
            I AL                P    +    FT++ +      +
Sbjct: 108 CIHALSYFLSMQD-----LAPPLIKSDENLSFTDEDVSIIVRRL 146


>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
           cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
           a.40.1.1
          Length = 203

 Score = 37.6 bits (87), Expect = 6e-05
 Identities = 6/41 (14%), Positives = 10/41 (24%), Gaps = 5/41 (12%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGE 42
            I AL                P    +    FT++ +    
Sbjct: 152 CIHALSYFLSMQD-----LAPPLIKSDENLSFTDEDVSIIV 187


>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural
           genomics, riken structural genomics/proteomics
           initiative, RSGI, NPPSFA; NMR {Homo sapiens}
          Length = 155

 Score = 35.0 bits (80), Expect = 6e-04
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 2   TIFALGRTCYKHPE--FRG-PFLGPKPSEEN 29
           T+  LG       +  F G P   PK S+E+
Sbjct: 120 TLMNLGGLAVARDDGLFSGDPNWFPKKSKES 150


>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural
           genomics, NPPSFA, riken structural genomics/proteomics
           initiative, RSGI; NMR {Homo sapiens}
          Length = 136

 Score = 27.9 bits (62), Expect = 0.17
 Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 1/24 (4%)

Query: 2   TIFALGRTCY-KHPEFRGPFLGPK 24
           T+ AL      K  +      GP 
Sbjct: 111 TLLALASMAKTKGNKVNVGVSGPS 134


>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
           NPPSFA, structural genomics, riken structural
           genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
          Length = 121

 Score = 25.6 bits (56), Expect = 1.1
 Identities = 3/14 (21%), Positives = 6/14 (42%)

Query: 2   TIFALGRTCYKHPE 15
           T+ A+ +     P 
Sbjct: 106 TLLAVNKATESGPS 119


>3s5q_A Putative glycosylhydrolase; concanavalin A-like lectins/glucanases,
           structural genomics, center for structural genomics,
           JCSG; 1.85A {Parabacteroides distasonis}
          Length = 214

 Score = 24.5 bits (53), Expect = 3.1
 Identities = 7/38 (18%), Positives = 12/38 (31%)

Query: 11  YKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQ 48
               ++      P  +E  +           +G IGLQ
Sbjct: 159 ANLADWTSGTTNPDGTEIPEWLPIPYANMPTKGYIGLQ 196


>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus
          pyogenes} PDB: 3eif_A*
          Length = 926

 Score = 24.6 bits (53), Expect = 3.3
 Identities = 2/17 (11%), Positives = 4/17 (23%)

Query: 11 YKHPEFRGPFLGPKPSE 27
            H  +R         +
Sbjct: 30 KNHEAWRLTDKTKARYQ 46


>1a0s_P Sucrose-specific porin; outer membrane protein; 2.40A {Salmonella
           typhimurium} SCOP: f.4.3.2 PDB: 1a0t_P* 1oh2_P* 1oh2_Q*
          Length = 413

 Score = 24.7 bits (53), Expect = 3.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 42  EGMIGLQAGTNKLASQSGQNFGA 64
           +   GL+ G++K A   G   GA
Sbjct: 227 DSFYGLRDGSSKTALLYGHGLGA 249


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,046,911
Number of extensions: 47441
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 11
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)