RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5620
         (72 letters)



>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
           {Fission yeast (Schizosaccharomyces pombe) [TaxId:
           4896]}
          Length = 159

 Score = 39.2 bits (91), Expect = 6e-06
 Identities = 6/42 (14%), Positives = 10/42 (23%), Gaps = 5/42 (11%)

Query: 1   MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGE 42
             I AL                P    +    FT++ +    
Sbjct: 107 YCIHALSYFLSMQD-----LAPPLIKSDENLSFTDEDVSIIV 143


>d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium
           (Salmonella typhimurium) [TaxId: 90371]}
          Length = 413

 Score = 23.0 bits (49), Expect = 4.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 46  GLQAGTNKLASQSGQNFGAT 65
           GL+ G++K A   G   GA 
Sbjct: 231 GLRDGSSKTALLYGHGLGAE 250


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 250,438
Number of extensions: 8832
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 2
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)